Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene034212.t1 | PON69570.1 | 87 | 92 | 12 | 0 | 38 | 129 | 50 | 141 | 4.70E-47 | 197.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene034212.t1 | Q9M9L0 | 100.0 | 76 | 0 | 0 | 53 | 128 | 8 | 83 | 3.1e-47 | 189.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene034212.t1 | A0A2P5D8D2 | 87.0 | 92 | 12 | 0 | 38 | 129 | 50 | 141 | 3.4e-47 | 197.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene98045 | MS.gene034212 | PPI |
| MS.gene26246 | MS.gene034212 | PPI |
| MS.gene017247 | MS.gene034212 | PPI |
| MS.gene034212 | MS.gene05127 | PPI |
| MS.gene034212 | MS.gene009653 | PPI |
| MS.gene034212 | MS.gene049594 | PPI |
| MS.gene53889 | MS.gene034212 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene034212.t1 | MTR_4g007410 | 100.000 | 77 | 0 | 0 | 53 | 129 | 12 | 88 | 8.41e-55 | 166 |
| MS.gene034212.t1 | MTR_7g005900 | 100.000 | 70 | 0 | 0 | 60 | 129 | 8 | 77 | 3.59e-49 | 152 |
| MS.gene034212.t1 | MTR_7g005900 | 100.000 | 57 | 0 | 0 | 73 | 129 | 1 | 57 | 1.74e-38 | 124 |
| MS.gene034212.t1 | MTR_4g046877 | 37.349 | 83 | 44 | 2 | 51 | 128 | 34 | 113 | 8.98e-15 | 65.9 |
| MS.gene034212.t1 | MTR_2g088570 | 36.145 | 83 | 45 | 2 | 51 | 128 | 35 | 114 | 6.36e-14 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene034212.t1 | AT3G05870 | 88.636 | 88 | 10 | 0 | 41 | 128 | 2 | 89 | 9.06e-55 | 166 |
| MS.gene034212.t1 | AT3G05870 | 88.636 | 88 | 10 | 0 | 41 | 128 | 2 | 89 | 9.06e-55 | 166 |
| MS.gene034212.t1 | AT3G05870 | 88.636 | 88 | 10 | 0 | 41 | 128 | 2 | 89 | 9.06e-55 | 166 |
| MS.gene034212.t1 | AT3G05870 | 100.000 | 76 | 0 | 0 | 53 | 128 | 11 | 86 | 6.50e-54 | 164 |
| MS.gene034212.t1 | AT3G05870 | 100.000 | 76 | 0 | 0 | 53 | 128 | 11 | 86 | 6.50e-54 | 164 |
| MS.gene034212.t1 | AT3G05870 | 100.000 | 76 | 0 | 0 | 53 | 128 | 11 | 86 | 6.50e-54 | 164 |
| MS.gene034212.t1 | AT3G05870 | 100.000 | 76 | 0 | 0 | 53 | 128 | 2 | 77 | 2.05e-53 | 162 |
| MS.gene034212.t1 | AT5G20570 | 37.349 | 83 | 44 | 2 | 51 | 128 | 35 | 114 | 1.53e-14 | 65.5 |
| MS.gene034212.t1 | AT5G26640 | 84.375 | 32 | 5 | 0 | 60 | 91 | 5 | 36 | 3.41e-14 | 62.8 |
| MS.gene034212.t1 | AT3G42830 | 37.349 | 83 | 44 | 2 | 51 | 128 | 32 | 111 | 1.21e-13 | 63.2 |
Find 44 sgRNAs with CRISPR-Local
Find 212 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGGTTGGTGGGGTTGTGTTT+TGG | 0.263733 | 4.4:+90685585 | MS.gene034212:CDS |
| CAGCTCTGTTGGCTGGTGGC+TGG | 0.268092 | 4.4:+90685420 | MS.gene034212:CDS |
| ATGCTGTTGCTTCATGGACT+TGG | 0.279744 | 4.4:+90686309 | MS.gene034212:CDS |
| CGTCGGGAATGGCAATTTAA+AGG | 0.290239 | 4.4:+90687286 | MS.gene034212:CDS |
| ATGCACAGGGGTAGTGAGGC+AGG | 0.329786 | 4.4:+90685678 | MS.gene034212:intron |
| ATTTGCATTGTATCTTGAAA+TGG | 0.352612 | 4.4:+90687224 | MS.gene034212:CDS |
| AGCTCTGTTGGCTGGTGGCT+GGG | 0.385269 | 4.4:+90685421 | MS.gene034212:CDS |
| TGAGTTGCTGTTGCGGTTGG+TGG | 0.390852 | 4.4:+90685572 | MS.gene034212:CDS |
| TGTCCTGATTGTAAACTTCC+CGG | 0.396496 | 4.4:+90686383 | MS.gene034212:CDS |
| GATGGCATGCTGTTGCTTCA+TGG | 0.397141 | 4.4:+90686303 | MS.gene034212:intron |
| GCCATTCCCGACGGCACATT+GGG | 0.397444 | 4.4:-90687276 | None:intergenic |
| ATTTGTAGGATGGCCTTTGA+TGG | 0.411828 | 4.4:+90686356 | MS.gene034212:CDS |
| TGCTGTTGCTTCATGGACTT+GGG | 0.419431 | 4.4:+90686310 | MS.gene034212:CDS |
| ATGAAACATGTGGGATTTGT+AGG | 0.429235 | 4.4:+90686342 | MS.gene034212:CDS |
| CTGCTGTTTCGCAGCTCTGT+TGG | 0.434373 | 4.4:+90685409 | MS.gene034212:CDS |
| TGCTGAGTTGCTGTTGCGGT+TGG | 0.446466 | 4.4:+90685569 | MS.gene034212:CDS |
| GAGTTGCTGTTGCGGTTGGT+GGG | 0.450398 | 4.4:+90685573 | MS.gene034212:CDS |
| TGCCATTCCCGACGGCACAT+TGG | 0.451421 | 4.4:-90687277 | None:intergenic |
| ACTGAGCGGGCAGTCATCCC+CGG | 0.466023 | 4.4:-90686402 | None:intergenic |
| GTCCTGATTGTAAACTTCCC+GGG | 0.472599 | 4.4:+90686384 | MS.gene034212:CDS |
| TGTTTCGCAGCTCTGTTGGC+TGG | 0.477622 | 4.4:+90685413 | MS.gene034212:CDS |
| CTGGGTTGATGTTCAGCTGT+TGG | 0.479676 | 4.4:+90685439 | MS.gene034212:CDS |
| GCCCAATGTGCCGTCGGGAA+TGG | 0.481653 | 4.4:+90687275 | MS.gene034212:CDS |
| TTTGCATTGTATCTTGAAAT+GGG | 0.482104 | 4.4:+90687225 | MS.gene034212:CDS |
| CTATTAACCTTTGAAGGACG+AGG | 0.493544 | 4.4:-90684314 | None:intergenic |
| CAGCTGCTGAGTTGCTGTTG+CGG | 0.498034 | 4.4:+90685565 | MS.gene034212:CDS |
| CACATTGCCCAATGTGCCGT+CGG | 0.515957 | 4.4:+90687269 | MS.gene034212:CDS |
| TCCCCGGGAAGTTTACAATC+AGG | 0.518100 | 4.4:-90686386 | None:intergenic |
| GCACAGGGGTAGTGAGGCAG+GGG | 0.527058 | 4.4:+90685680 | MS.gene034212:intron |
| CTTTAAATTGCCATTCCCGA+CGG | 0.544857 | 4.4:-90687285 | None:intergenic |
| CATTGGGCAATGTGCTTGTG+AGG | 0.551130 | 4.4:-90687260 | None:intergenic |
| AAATGAACCTCGTCCTTCAA+AGG | 0.555109 | 4.4:+90684307 | None:intergenic |
| AGTTGCTGTTGCGGTTGGTG+GGG | 0.559390 | 4.4:+90685574 | MS.gene034212:CDS |
| TGCACAGGGGTAGTGAGGCA+GGG | 0.559698 | 4.4:+90685679 | MS.gene034212:intron |
| ACATTGCCCAATGTGCCGTC+GGG | 0.562769 | 4.4:+90687270 | MS.gene034212:CDS |
| CTGAGCGGGCAGTCATCCCC+GGG | 0.565342 | 4.4:-90686401 | None:intergenic |
| TCCTGATTGTAAACTTCCCG+GGG | 0.576107 | 4.4:+90686385 | MS.gene034212:CDS |
| TTCGCAGCTCTGTTGGCTGG+TGG | 0.577089 | 4.4:+90685416 | MS.gene034212:CDS |
| TTAGCAGTAGCTTACTGAGC+GGG | 0.577553 | 4.4:-90686415 | None:intergenic |
| TGTCATGCACAGGGGTAGTG+AGG | 0.620052 | 4.4:+90685674 | MS.gene034212:intron |
| ATCAGGACAACATCCATCAA+AGG | 0.626104 | 4.4:-90686369 | None:intergenic |
| AACATGTGGGATTTGTAGGA+TGG | 0.654714 | 4.4:+90686346 | MS.gene034212:CDS |
| GATGCACAAGATGAAACATG+TGG | 0.720145 | 4.4:+90686332 | MS.gene034212:CDS |
| ATGCACAAGATGAAACATGT+GGG | 0.725526 | 4.4:+90686333 | MS.gene034212:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGGAATAATATAATTTTTAA+GGG | + | chr4.4:90685206-90685225 | MS.gene034212:intron | 10.0% |
| !!! | ATTTTAATCAAATTTTTTGT+TGG | + | chr4.4:90686189-90686208 | MS.gene034212:intron | 10.0% |
| !!! | CAATTTTTTTTTTTTTGAAA+TGG | - | chr4.4:90685891-90685910 | None:intergenic | 10.0% |
| !!! | TTCAATTTTTTTTATGAATT+GGG | + | chr4.4:90684566-90684585 | MS.gene034212:intron | 10.0% |
| !!! | TTTCAATTTTTTTTATGAAT+TGG | + | chr4.4:90684565-90684584 | MS.gene034212:intron | 10.0% |
| !!! | TTTTAATCAAATTTTTTGTT+GGG | + | chr4.4:90686190-90686209 | MS.gene034212:intron | 10.0% |
| !! | AATCATAAAAAAAGAAATGT+CGG | - | chr4.4:90685311-90685330 | None:intergenic | 15.0% |
| !! | ATAAATAAGAAAGTAATCAA+GGG | + | chr4.4:90685137-90685156 | MS.gene034212:intron | 15.0% |
| !! | ATATTTATTGAGTATATGTT+TGG | + | chr4.4:90684952-90684971 | MS.gene034212:intron | 15.0% |
| !! | CTAATTATATGTAATAACAA+AGG | + | chr4.4:90686133-90686152 | MS.gene034212:intron | 15.0% |
| !! | GAAATTAAAAAGATAGAAAA+TGG | - | chr4.4:90685821-90685840 | None:intergenic | 15.0% |
| !! | GTAGTTTCATAAATATAATT+AGG | + | chr4.4:90686825-90686844 | MS.gene034212:intron | 15.0% |
| !! | TATAAATAAGAAAGTAATCA+AGG | + | chr4.4:90685136-90685155 | MS.gene034212:intron | 15.0% |
| !!! | GAGGAATAATATAATTTTTA+AGG | + | chr4.4:90685205-90685224 | MS.gene034212:intron | 15.0% |
| !! | ACATATAATTAGTGTGTATT+TGG | - | chr4.4:90686125-90686144 | None:intergenic | 20.0% |
| !! | ATATGTATTTAAGCATGTAT+GGG | - | chr4.4:90684778-90684797 | None:intergenic | 20.0% |
| !! | TAAATAAGAAAGTAATCAAG+GGG | + | chr4.4:90685138-90685157 | MS.gene034212:intron | 20.0% |
| !! | TATTTGCATAAATTTGTCTT+TGG | + | chr4.4:90686469-90686488 | MS.gene034212:intron | 20.0% |
| !!! | AATTTTGTTTTTCTTGACTT+AGG | + | chr4.4:90684606-90684625 | MS.gene034212:intron | 20.0% |
| !!! | ACATTTTTATTGAAATCAAG+TGG | + | chr4.4:90684873-90684892 | MS.gene034212:intron | 20.0% |
| !!! | ACTGAAAATTTGAAATTACT+AGG | - | chr4.4:90686216-90686235 | None:intergenic | 20.0% |
| !!! | ATTGTATGTTTTTGTTACAA+TGG | + | chr4.4:90684721-90684740 | MS.gene034212:intron | 20.0% |
| !!! | CATTTTTATTGAAATCAAGT+GGG | + | chr4.4:90684874-90684893 | MS.gene034212:intron | 20.0% |
| !!! | GACATTTCTTTTTTTATGAT+TGG | + | chr4.4:90685310-90685329 | MS.gene034212:intron | 20.0% |
| !!! | GTAATTGACAATTCTATTTT+GGG | + | chr4.4:90686971-90686990 | MS.gene034212:intron | 20.0% |
| !!! | GTTTTTTTGTGTTAGTTTTT+TGG | + | chr4.4:90685762-90685781 | MS.gene034212:intron | 20.0% |
| !!! | TCAGTTCATTTCTAATTTTT+CGG | + | chr4.4:90686766-90686785 | MS.gene034212:intron | 20.0% |
| !!! | TTATAAAAGCTTTATTCTCA+AGG | + | chr4.4:90686895-90686914 | MS.gene034212:intron | 20.0% |
| !!! | TTGTTCTGTAAAAATGATTT+TGG | - | chr4.4:90686086-90686105 | None:intergenic | 20.0% |
| ! | AAACTACAAATGATGTTTAG+AGG | - | chr4.4:90686812-90686831 | None:intergenic | 25.0% |
| ! | AAAGCAAAAATCAATTCTAG+AGG | - | chr4.4:90685936-90685955 | None:intergenic | 25.0% |
| ! | AATTGTCAATTACCATCTTA+TGG | - | chr4.4:90686964-90686983 | None:intergenic | 25.0% |
| ! | AGAATCATATTTGATCAGTT+AGG | - | chr4.4:90687123-90687142 | None:intergenic | 25.0% |
| ! | AGGAATTGAAGAATAATGAA+AGG | - | chr4.4:90684461-90684480 | None:intergenic | 25.0% |
| ! | ATGTAATAACAAAGGTTGTA+TGG | + | chr4.4:90686141-90686160 | MS.gene034212:intron | 25.0% |
| ! | ATTTGCATTGTATCTTGAAA+TGG | + | chr4.4:90687224-90687243 | MS.gene034212:CDS | 25.0% |
| ! | GATATGTATTTAAGCATGTA+TGG | - | chr4.4:90684779-90684798 | None:intergenic | 25.0% |
| ! | GGAATTGAAGAATAATGAAA+GGG | - | chr4.4:90684460-90684479 | None:intergenic | 25.0% |
| ! | GTAATATGCAAAATTGAAAG+AGG | - | chr4.4:90684481-90684500 | None:intergenic | 25.0% |
| ! | TGAAAAATTCTCAATTATGC+AGG | - | chr4.4:90686935-90686954 | None:intergenic | 25.0% |
| ! | TTAATTGTTCTCTTGTGATT+TGG | + | chr4.4:90685013-90685032 | MS.gene034212:intron | 25.0% |
| ! | TTTGCATTGTATCTTGAAAT+GGG | + | chr4.4:90687225-90687244 | MS.gene034212:CDS | 25.0% |
| !! | AACTAAAAGTCTCTTTTCTA+AGG | - | chr4.4:90686636-90686655 | None:intergenic | 25.0% |
| !! | AAGGTAAAGTGATTTTTGTT+TGG | - | chr4.4:90686049-90686068 | None:intergenic | 25.0% |
| !! | AATAGTTGCAAAGATGTTTT+AGG | + | chr4.4:90684823-90684842 | MS.gene034212:intron | 25.0% |
| !! | ATAGTTGCAAAGATGTTTTA+GGG | + | chr4.4:90684824-90684843 | MS.gene034212:intron | 25.0% |
| !! | ATGAACTTGAACAATTTTGA+TGG | + | chr4.4:90684340-90684359 | MS.gene034212:intron | 25.0% |
| !! | ATTTAGGATTAGGATTACAA+TGG | + | chr4.4:90684752-90684771 | MS.gene034212:intron | 25.0% |
| !! | CATTTTCTATTAACCTTTGA+AGG | - | chr4.4:90684323-90684342 | None:intergenic | 25.0% |
| !! | GGTAATTGACAATTCTATTT+TGG | + | chr4.4:90686970-90686989 | MS.gene034212:intron | 25.0% |
| !!! | CTTTTTTTATGATTGGTGTT+GGG | + | chr4.4:90685317-90685336 | MS.gene034212:intron | 25.0% |
| !!! | TAATTTTTCGGAATGTAGAT+AGG | + | chr4.4:90686778-90686797 | MS.gene034212:intron | 25.0% |
| !!! | TCTTTTTTTATGATTGGTGT+TGG | + | chr4.4:90685316-90685335 | MS.gene034212:intron | 25.0% |
| AATGTTGAATGATAAATCCC+AGG | - | chr4.4:90686001-90686020 | None:intergenic | 30.0% | |
| AATTCTCAAGCATGATTTCA+CGG | - | chr4.4:90686997-90687016 | None:intergenic | 30.0% | |
| AGGGAATTGAAATATTGAGA+AGG | - | chr4.4:90684441-90684460 | None:intergenic | 30.0% | |
| AGGGTAATAATCAATTCTCA+AGG | - | chr4.4:90685981-90686000 | None:intergenic | 30.0% | |
| ATGTTGAATGATAAATCCCA+GGG | - | chr4.4:90686000-90686019 | None:intergenic | 30.0% | |
| CTACAAAGATGTATTGTTAC+TGG | + | chr4.4:90686856-90686875 | MS.gene034212:intron | 30.0% | |
| GTAAAGCTTAACTTCATAAC+TGG | + | chr4.4:90686542-90686561 | MS.gene034212:intron | 30.0% | |
| TACAATGGAATGTCTGATTT+AGG | + | chr4.4:90684736-90684755 | MS.gene034212:intron | 30.0% | |
| TCAAGGGGTTATGATTAATT+TGG | + | chr4.4:90685153-90685172 | MS.gene034212:intron | 30.0% | |
| TGAGAATTGATTATTACCCT+GGG | + | chr4.4:90685981-90686000 | MS.gene034212:intron | 30.0% | |
| TTATGAGGTAGATGAAATTG+TGG | + | chr4.4:90685235-90685254 | MS.gene034212:intron | 30.0% | |
| TTGAGAATTGATTATTACCC+TGG | + | chr4.4:90685980-90685999 | MS.gene034212:intron | 30.0% | |
| TTTAGGGATTGATACAACAT+TGG | + | chr4.4:90684840-90684859 | MS.gene034212:intron | 30.0% | |
| TTTATTGAAATCAAGTGGGA+AGG | + | chr4.4:90684878-90684897 | MS.gene034212:intron | 30.0% | |
| ! | AATTTGGCTCACAACAATTT+GGG | + | chr4.4:90685169-90685188 | MS.gene034212:intron | 30.0% |
| ! | TAATTTGGCTCACAACAATT+TGG | + | chr4.4:90685168-90685187 | MS.gene034212:intron | 30.0% |
| !! | AACTTGAACAATTTTGATGG+CGG | + | chr4.4:90684343-90684362 | MS.gene034212:intron | 30.0% |
| !! | AAGCTTTATTCTCAAGGAAT+TGG | + | chr4.4:90686901-90686920 | MS.gene034212:intron | 30.0% |
| !! | TATATGTTTGGTTCCACTTT+TGG | + | chr4.4:90684964-90684983 | MS.gene034212:intron | 30.0% |
| !! | TCACAACAATTTGGGTTTTA+TGG | + | chr4.4:90685177-90685196 | MS.gene034212:intron | 30.0% |
| !!! | TTTTAAGGGTGTCAATTATG+AGG | + | chr4.4:90685220-90685239 | MS.gene034212:intron | 30.0% |
| AAATTGTACTTCCTCTTGCT+TGG | + | chr4.4:90685518-90685537 | MS.gene034212:intron | 35.0% | |
| AATTATGCCTTGGGAGATAA+GGG | + | chr4.4:90685352-90685371 | MS.gene034212:intron | 35.0% | |
| AATTGGGTATTTGCAGAACA+TGG | + | chr4.4:90684582-90684601 | MS.gene034212:intron | 35.0% | |
| AGAAACAAAGACAGACATCA+CGG | - | chr4.4:90687031-90687050 | None:intergenic | 35.0% | |
| ATGAAACATGTGGGATTTGT+AGG | + | chr4.4:90686342-90686361 | MS.gene034212:CDS | 35.0% | |
| ATGCACAAGATGAAACATGT+GGG | + | chr4.4:90686333-90686352 | MS.gene034212:CDS | 35.0% | |
| CATAGCGAGACATGATTAAA+CGG | - | chr4.4:90684801-90684820 | None:intergenic | 35.0% | |
| TCCTAACCTCTTTGTTCATT+GGG | + | chr4.4:90685094-90685113 | MS.gene034212:intron | 35.0% | |
| TCTCTTACGTCAAATGTAGA+TGG | + | chr4.4:90686285-90686304 | MS.gene034212:intron | 35.0% | |
| TGTGAAGCAAAAGAACAAAC+AGG | - | chr4.4:90684503-90684522 | None:intergenic | 35.0% | |
| TTTCCTACTACTTGCAGTTT+GGG | + | chr4.4:90687180-90687199 | MS.gene034212:intron | 35.0% | |
| ! | AATTTTGCTTGCTCCAAAAG+TGG | - | chr4.4:90684980-90684999 | None:intergenic | 35.0% |
| ! | GCATAACTTGTCTTTCTCTA+CGG | + | chr4.4:90687073-90687092 | MS.gene034212:intron | 35.0% |
| ! | GGAATGTCTGATTTAGGATT+AGG | + | chr4.4:90684742-90684761 | MS.gene034212:intron | 35.0% |
| ! | TGACTTAGGTTTCTCCTTTT+GGG | + | chr4.4:90684620-90684639 | MS.gene034212:intron | 35.0% |
| ! | TGATGTCTGTCTTTGTTTCT+CGG | + | chr4.4:90687031-90687050 | MS.gene034212:intron | 35.0% |
| ! | TTGACTTAGGTTTCTCCTTT+TGG | + | chr4.4:90684619-90684638 | MS.gene034212:intron | 35.0% |
| ! | TTTGGCTAAAAGTGAGTTGA+AGG | - | chr4.4:90686068-90686087 | None:intergenic | 35.0% |
| ! | TTTTCAGAAGAGCCATAAGA+TGG | + | chr4.4:90686949-90686968 | MS.gene034212:intron | 35.0% |
| ! | TTTTCCTACTACTTGCAGTT+TGG | + | chr4.4:90687179-90687198 | MS.gene034212:intron | 35.0% |
| !! | ACAACTTCTGTTTCTGTGTT+AGG | + | chr4.4:90685478-90685497 | MS.gene034212:intron | 35.0% |
| !! | TTTATGATTGGTGTTGGGAT+TGG | + | chr4.4:90685322-90685341 | MS.gene034212:intron | 35.0% |
| !! | TTTGGGTTTTATGGAAAGTG+AGG | + | chr4.4:90685186-90685205 | MS.gene034212:intron | 35.0% |
| !!! | AGTTTTTTGGTGTTGTGACT+GGG | + | chr4.4:90685775-90685794 | MS.gene034212:intron | 35.0% |
| !!! | CACTGTAGTTTTTTAGTGGA+GGG | + | chr4.4:90685638-90685657 | MS.gene034212:intron | 35.0% |
| !!! | TAGTTTTTTGGTGTTGTGAC+TGG | + | chr4.4:90685774-90685793 | MS.gene034212:intron | 35.0% |
| !!! | TTTTGGTTTGCTGTGATGTT+TGG | + | chr4.4:90685602-90685621 | MS.gene034212:intron | 35.0% |
| !!! | TTTTTGAGTTCTCTACATGC+AGG | + | chr4.4:90686731-90686750 | MS.gene034212:intron | 35.0% |
| AAACAGAGCTGCTAAAACAG+CGG | - | chr4.4:90685389-90685408 | None:intergenic | 40.0% | |
| AACACTCCCAATGAACAAAG+AGG | - | chr4.4:90685103-90685122 | None:intergenic | 40.0% | |
| AACATGTGGGATTTGTAGGA+TGG | + | chr4.4:90686346-90686365 | MS.gene034212:CDS | 40.0% | |
| AGATCAGCAGATATCCCAAA+AGG | - | chr4.4:90684637-90684656 | None:intergenic | 40.0% | |
| ATCAGGACAACATCCATCAA+AGG | - | chr4.4:90686372-90686391 | None:intergenic | 40.0% | |
| ATCTCCCAAGGCATAATTGA+GGG | - | chr4.4:90685350-90685369 | None:intergenic | 40.0% | |
| ATCTCTGTGATGTGAATCAG+TGG | - | chr4.4:90684397-90684416 | None:intergenic | 40.0% | |
| ATTAGCAGTAGCTTACTGAG+CGG | - | chr4.4:90686419-90686438 | None:intergenic | 40.0% | |
| ATTTGTAGGATGGCCTTTGA+TGG | + | chr4.4:90686356-90686375 | MS.gene034212:CDS | 40.0% | |
| CAATGAACAAAGAGGTTAGG+AGG | - | chr4.4:90685095-90685114 | None:intergenic | 40.0% | |
| CAATTATGCCTTGGGAGATA+AGG | + | chr4.4:90685351-90685370 | MS.gene034212:intron | 40.0% | |
| CCTCCACTAAAAAACTACAG+TGG | - | chr4.4:90685640-90685659 | None:intergenic | 40.0% | |
| CTCCTAACCTCTTTGTTCAT+TGG | + | chr4.4:90685093-90685112 | MS.gene034212:intron | 40.0% | |
| CTTTAAATTGCCATTCCCGA+CGG | - | chr4.4:90687288-90687307 | None:intergenic | 40.0% | |
| GAAATCAAGTGGGAAGGAAT+TGG | + | chr4.4:90684884-90684903 | MS.gene034212:intron | 40.0% | |
| GACTGTTAGCACGTATAGTT+CGG | + | chr4.4:90685710-90685729 | MS.gene034212:intron | 40.0% | |
| GAGCCAGACAAAAAAGTTTG+GGG | - | chr4.4:90684372-90684391 | None:intergenic | 40.0% | |
| GATGCACAAGATGAAACATG+TGG | + | chr4.4:90686332-90686351 | MS.gene034212:CDS | 40.0% | |
| GCTACTGCTAATGTTGTCTT+TGG | + | chr4.4:90686427-90686446 | MS.gene034212:intron | 40.0% | |
| GGAGCCAGACAAAAAAGTTT+GGG | - | chr4.4:90684373-90684392 | None:intergenic | 40.0% | |
| GTTGTATGGCTAGTGTGAAT+AGG | + | chr4.4:90686155-90686174 | MS.gene034212:intron | 40.0% | |
| GTTTCTGTGTTAGGAACAGA+TGG | + | chr4.4:90685487-90685506 | MS.gene034212:intron | 40.0% | |
| TATCTCCCAAGGCATAATTG+AGG | - | chr4.4:90685351-90685370 | None:intergenic | 40.0% | |
| TCCCAATGAACAAAGAGGTT+AGG | - | chr4.4:90685098-90685117 | None:intergenic | 40.0% | |
| TGAAATTGTGGAGGAGATCA+AGG | + | chr4.4:90685247-90685266 | MS.gene034212:intron | 40.0% | |
| TGAGGTAGATGAAATTGTGG+AGG | + | chr4.4:90685238-90685257 | MS.gene034212:intron | 40.0% | |
| TGGAACTGGAGAACAAACAT+GGG | + | chr4.4:90684907-90684926 | MS.gene034212:intron | 40.0% | |
| TGTATTGTTACTGGCATGCA+AGG | + | chr4.4:90686865-90686884 | MS.gene034212:intron | 40.0% | |
| TGTCCTGATTGTAAACTTCC+CGG | + | chr4.4:90686383-90686402 | MS.gene034212:CDS | 40.0% | |
| TTCCTACTACTTGCAGTTTG+GGG | + | chr4.4:90687181-90687200 | MS.gene034212:intron | 40.0% | |
| TTTCGGAATGTAGATAGGTC+TGG | + | chr4.4:90686783-90686802 | MS.gene034212:intron | 40.0% | |
| ! | CTATTAACCTTTGAAGGACG+AGG | - | chr4.4:90684317-90684336 | None:intergenic | 40.0% |
| ! | TACTTGATTGCGAGGTTTTG+TGG | + | chr4.4:90685739-90685758 | MS.gene034212:intron | 40.0% |
| ! | TCTTTGTTCATTGGGAGTGT+TGG | + | chr4.4:90685102-90685121 | MS.gene034212:intron | 40.0% |
| !! | ACTTGATTGCGAGGTTTTGT+GGG | + | chr4.4:90685740-90685759 | MS.gene034212:intron | 40.0% |
| !! | CTTCCTCTTGCTTGGTTTTT+AGG | + | chr4.4:90685526-90685545 | MS.gene034212:intron | 40.0% |
| !! | CTTTGTTCATTGGGAGTGTT+GGG | + | chr4.4:90685103-90685122 | MS.gene034212:intron | 40.0% |
| !! | GGTTTTTAGGCTCTTTTGCT+GGG | + | chr4.4:90685539-90685558 | MS.gene034212:intron | 40.0% |
| !! | TGGTTTTTAGGCTCTTTTGC+TGG | + | chr4.4:90685538-90685557 | MS.gene034212:intron | 40.0% |
| !! | TTTGTTCATTGGGAGTGTTG+GGG | + | chr4.4:90685104-90685123 | MS.gene034212:intron | 40.0% |
| !!! | CCACTGTAGTTTTTTAGTGG+AGG | + | chr4.4:90685637-90685656 | MS.gene034212:intron | 40.0% |
| !!! | GCTGTTGGTGTGTTTTTTGA+AGG | + | chr4.4:90685454-90685473 | MS.gene034212:intron | 40.0% |
| !!! | GTGCCACTGTAGTTTTTTAG+TGG | + | chr4.4:90685634-90685653 | MS.gene034212:intron | 40.0% |
| AAAATGGCGCCGCATATAGA+CGG | - | chr4.4:90685805-90685824 | None:intergenic | 45.0% | |
| AACAAAGACAGACATCACGG+CGG | - | chr4.4:90687028-90687047 | None:intergenic | 45.0% | |
| AACCTCGCAATCAAGTAACG+AGG | - | chr4.4:90685736-90685755 | None:intergenic | 45.0% | |
| ATCAAGTGGGAAGGAATTGG+TGG | + | chr4.4:90684887-90684906 | MS.gene034212:intron | 45.0% | |
| CCAGACAAAAAAGTTTGGGG+TGG | - | chr4.4:90684369-90684388 | None:intergenic | 45.0% | |
| CGGAGCCAGACAAAAAAGTT+TGG | - | chr4.4:90684374-90684393 | None:intergenic | 45.0% | |
| CGTCGGGAATGGCAATTTAA+AGG | + | chr4.4:90687286-90687305 | MS.gene034212:CDS | 45.0% | |
| GAGCCTAAAAACCAAGCAAG+AGG | - | chr4.4:90685532-90685551 | None:intergenic | 45.0% | |
| GCAAGATGCAAAAACACTCG+CGG | - | chr4.4:90685843-90685862 | None:intergenic | 45.0% | |
| GGAACCCTCAATTATGCCTT+GGG | + | chr4.4:90685343-90685362 | MS.gene034212:intron | 45.0% | |
| GTCCTGATTGTAAACTTCCC+GGG | + | chr4.4:90686384-90686403 | MS.gene034212:CDS | 45.0% | |
| GTGGAACTGGAGAACAAACA+TGG | + | chr4.4:90684906-90684925 | MS.gene034212:intron | 45.0% | |
| TCCTGATTGTAAACTTCCCG+GGG | + | chr4.4:90686385-90686404 | MS.gene034212:CDS | 45.0% | |
| TCTGTGATGTGAATCAGTGG+CGG | - | chr4.4:90684394-90684413 | None:intergenic | 45.0% | |
| TGAACAAAGAGGTTAGGAGG+AGG | - | chr4.4:90685092-90685111 | None:intergenic | 45.0% | |
| TGGAACCCTCAATTATGCCT+TGG | + | chr4.4:90685342-90685361 | MS.gene034212:intron | 45.0% | |
| TGTGGACGAAATTGATGTGG+TGG | + | chr4.4:90685045-90685064 | MS.gene034212:intron | 45.0% | |
| TTAGCAGTAGCTTACTGAGC+GGG | - | chr4.4:90686418-90686437 | None:intergenic | 45.0% | |
| TTGTTCTGCTGTCATGCACA+GGG | + | chr4.4:90685665-90685684 | MS.gene034212:intron | 45.0% | |
| TTTGTTCTGCTGTCATGCAC+AGG | + | chr4.4:90685664-90685683 | MS.gene034212:intron | 45.0% | |
| ! | ATGCTGTTGCTTCATGGACT+TGG | + | chr4.4:90686309-90686328 | MS.gene034212:CDS | 45.0% |
| ! | CTCTTGTGATTTGGCGTGTT+CGG | + | chr4.4:90685022-90685041 | MS.gene034212:intron | 45.0% |
| ! | TGCTGTTGCTTCATGGACTT+GGG | + | chr4.4:90686310-90686329 | MS.gene034212:CDS | 45.0% |
| !! | TGGTTTGCTGTGATGTTTGG+AGG | + | chr4.4:90685605-90685624 | MS.gene034212:intron | 45.0% |
| !!! | CCACCCCAAACTTTTTTGTC+TGG | + | chr4.4:90684366-90684385 | MS.gene034212:intron | 45.0% |
| CACCCCAAACTGCAAGTAGT+AGG | - | chr4.4:90687186-90687205 | None:intergenic | 50.0% | |
| CATTGGGCAATGTGCTTGTG+AGG | - | chr4.4:90687263-90687282 | None:intergenic | 50.0% | |
| CGGTGTGGACGAAATTGATG+TGG | + | chr4.4:90685042-90685061 | MS.gene034212:intron | 50.0% | |
| CTGGGTGTTCCGTCTATATG+CGG | + | chr4.4:90685793-90685812 | MS.gene034212:intron | 50.0% | |
| GACGAAATTGATGTGGTGGC+TGG | + | chr4.4:90685049-90685068 | MS.gene034212:intron | 50.0% | |
| TATGCCTTGGGAGATAAGGG+AGG | + | chr4.4:90685355-90685374 | MS.gene034212:intron | 50.0% | |
| TCCCCGGGAAGTTTACAATC+AGG | - | chr4.4:90686389-90686408 | None:intergenic | 50.0% | |
| TGGGAAGGAATTGGTGGAAC+TGG | + | chr4.4:90684893-90684912 | MS.gene034212:intron | 50.0% | |
| TGTTCTGCTGTCATGCACAG+GGG | + | chr4.4:90685666-90685685 | MS.gene034212:intron | 50.0% | |
| ! | GATGGCATGCTGTTGCTTCA+TGG | + | chr4.4:90686303-90686322 | MS.gene034212:intron | 50.0% |
| !! | AGGAGATCAAGGTGTTGTCG+TGG | + | chr4.4:90685258-90685277 | MS.gene034212:intron | 50.0% |
| !! | CTGGGTTGATGTTCAGCTGT+TGG | + | chr4.4:90685439-90685458 | MS.gene034212:CDS | 50.0% |
| !! | TTCATTGGGAGTGTTGGGGT+GGG | + | chr4.4:90685108-90685127 | MS.gene034212:intron | 50.0% |
| ACATTGCCCAATGTGCCGTC+GGG | + | chr4.4:90687270-90687289 | MS.gene034212:CDS | 55.0% | |
| CACACCTCCCTTATCTCCCA+AGG | - | chr4.4:90685362-90685381 | None:intergenic | 55.0% | |
| CACATTGCCCAATGTGCCGT+CGG | + | chr4.4:90687269-90687288 | MS.gene034212:CDS | 55.0% | |
| GGCCTCGTTACTTGATTGCG+AGG | + | chr4.4:90685731-90685750 | MS.gene034212:intron | 55.0% | |
| TGTCATGCACAGGGGTAGTG+AGG | + | chr4.4:90685674-90685693 | MS.gene034212:intron | 55.0% | |
| TGTTTCGCAGCTCTGTTGGC+TGG | + | chr4.4:90685413-90685432 | MS.gene034212:CDS | 55.0% | |
| ! | AGTTGCTGTTGCGGTTGGTG+GGG | + | chr4.4:90685574-90685593 | MS.gene034212:CDS | 55.0% |
| ! | CAGCTGCTGAGTTGCTGTTG+CGG | + | chr4.4:90685565-90685584 | MS.gene034212:CDS | 55.0% |
| ! | GAGTTGCTGTTGCGGTTGGT+GGG | + | chr4.4:90685573-90685592 | MS.gene034212:CDS | 55.0% |
| ! | GTGATTTGGCGTGTTCGGTG+TGG | + | chr4.4:90685027-90685046 | MS.gene034212:intron | 55.0% |
| ! | TGAGTTGCTGTTGCGGTTGG+TGG | + | chr4.4:90685572-90685591 | MS.gene034212:CDS | 55.0% |
| ! | TGCTGAGTTGCTGTTGCGGT+TGG | + | chr4.4:90685569-90685588 | MS.gene034212:CDS | 55.0% |
| !! | CTGCTGTTTCGCAGCTCTGT+TGG | + | chr4.4:90685409-90685428 | MS.gene034212:CDS | 55.0% |
| !! | GTTCATTGGGAGTGTTGGGG+TGG | + | chr4.4:90685107-90685126 | MS.gene034212:intron | 55.0% |
| !! | TCAAGGTGTTGTCGTGGCAG+TGG | + | chr4.4:90685264-90685283 | MS.gene034212:intron | 55.0% |
| !!! | CGGTTGGTGGGGTTGTGTTT+TGG | + | chr4.4:90685585-90685604 | MS.gene034212:CDS | 55.0% |
| ATGCACAGGGGTAGTGAGGC+AGG | + | chr4.4:90685678-90685697 | MS.gene034212:intron | 60.0% | |
| GCCATTCCCGACGGCACATT+GGG | - | chr4.4:90687279-90687298 | None:intergenic | 60.0% | |
| TGCACAGGGGTAGTGAGGCA+GGG | + | chr4.4:90685679-90685698 | MS.gene034212:intron | 60.0% | |
| TGCCATTCCCGACGGCACAT+TGG | - | chr4.4:90687280-90687299 | None:intergenic | 60.0% | |
| ! | AGCTCTGTTGGCTGGTGGCT+GGG | + | chr4.4:90685421-90685440 | MS.gene034212:CDS | 60.0% |
| ! | TTCGCAGCTCTGTTGGCTGG+TGG | + | chr4.4:90685416-90685435 | MS.gene034212:CDS | 60.0% |
| !! | ATTGGGAGTGTTGGGGTGGG+AGG | + | chr4.4:90685111-90685130 | MS.gene034212:intron | 60.0% |
| !! | TTGGGAGTGTTGGGGTGGGA+GGG | + | chr4.4:90685112-90685131 | MS.gene034212:intron | 60.0% |
| ACTGAGCGGGCAGTCATCCC+CGG | - | chr4.4:90686405-90686424 | None:intergenic | 65.0% | |
| GCACAGGGGTAGTGAGGCAG+GGG | + | chr4.4:90685680-90685699 | MS.gene034212:intron | 65.0% | |
| GCCCAATGTGCCGTCGGGAA+TGG | + | chr4.4:90687275-90687294 | MS.gene034212:CDS | 65.0% | |
| ! | CAGCTCTGTTGGCTGGTGGC+TGG | + | chr4.4:90685420-90685439 | MS.gene034212:CDS | 65.0% |
| CTGAGCGGGCAGTCATCCCC+GGG | - | chr4.4:90686404-90686423 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 90684309 | 90687312 | 90684309 | ID=MS.gene034212 |
| chr4.4 | mRNA | 90684309 | 90687312 | 90684309 | ID=MS.gene034212.t1;Parent=MS.gene034212 |
| chr4.4 | exon | 90684309 | 90684328 | 90684309 | ID=MS.gene034212.t1.exon1;Parent=MS.gene034212.t1 |
| chr4.4 | CDS | 90684309 | 90684328 | 90684309 | ID=cds.MS.gene034212.t1;Parent=MS.gene034212.t1 |
| chr4.4 | exon | 90685401 | 90685460 | 90685401 | ID=MS.gene034212.t1.exon2;Parent=MS.gene034212.t1 |
| chr4.4 | CDS | 90685401 | 90685460 | 90685401 | ID=cds.MS.gene034212.t1;Parent=MS.gene034212.t1 |
| chr4.4 | exon | 90685548 | 90685606 | 90685548 | ID=MS.gene034212.t1.exon3;Parent=MS.gene034212.t1 |
| chr4.4 | CDS | 90685548 | 90685606 | 90685548 | ID=cds.MS.gene034212.t1;Parent=MS.gene034212.t1 |
| chr4.4 | exon | 90685686 | 90685701 | 90685686 | ID=MS.gene034212.t1.exon4;Parent=MS.gene034212.t1 |
| chr4.4 | CDS | 90685686 | 90685701 | 90685686 | ID=cds.MS.gene034212.t1;Parent=MS.gene034212.t1 |
| chr4.4 | exon | 90686304 | 90686422 | 90686304 | ID=MS.gene034212.t1.exon5;Parent=MS.gene034212.t1 |
| chr4.4 | CDS | 90686304 | 90686422 | 90686304 | ID=cds.MS.gene034212.t1;Parent=MS.gene034212.t1 |
| chr4.4 | exon | 90687197 | 90687312 | 90687197 | ID=MS.gene034212.t1.exon6;Parent=MS.gene034212.t1 |
| chr4.4 | CDS | 90687197 | 90687312 | 90687197 | ID=cds.MS.gene034212.t1;Parent=MS.gene034212.t1 |
| Gene Sequence |
| Protein sequence |
