Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene034446.t1 | 5H8J_A | 97.3 | 301 | 8 | 0 | 1 | 301 | 4 | 304 | 3.50E-170 | 607.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene034446.t1 | Q3HVN1 | 86.5 | 297 | 40 | 0 | 4 | 300 | 3 | 299 | 1.5e-153 | 543.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene034446.t1 | G7ITU5 | 97.3 | 301 | 8 | 0 | 1 | 301 | 1 | 301 | 2.5e-170 | 607.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene034446 | MS.gene55382 | PPI |
MS.gene034446 | MS.gene99693 | PPI |
MS.gene034446 | MS.gene53169 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene034446.t1 | MTR_2g086600 | 97.342 | 301 | 8 | 0 | 1 | 301 | 1 | 301 | 0.0 | 614 |
MS.gene034446.t1 | MTR_4g093570 | 28.625 | 269 | 172 | 7 | 32 | 288 | 125 | 385 | 4.33e-26 | 107 |
MS.gene034446.t1 | MTR_1g116080 | 27.000 | 300 | 187 | 12 | 1 | 289 | 39 | 317 | 1.37e-23 | 98.6 |
MS.gene034446.t1 | MTR_4g093580 | 24.535 | 269 | 183 | 6 | 32 | 288 | 94 | 354 | 3.61e-21 | 92.8 |
MS.gene034446.t1 | MTR_3g104850 | 25.773 | 291 | 187 | 9 | 11 | 291 | 28 | 299 | 4.82e-21 | 91.3 |
MS.gene034446.t1 | MTR_4g093580 | 24.542 | 273 | 186 | 6 | 32 | 292 | 127 | 391 | 5.94e-21 | 92.4 |
MS.gene034446.t1 | MTR_3g104850 | 25.773 | 291 | 187 | 9 | 11 | 291 | 78 | 349 | 1.60e-20 | 90.5 |
MS.gene034446.t1 | MTR_4g093580 | 26.633 | 199 | 130 | 3 | 103 | 292 | 55 | 246 | 2.92e-18 | 83.2 |
MS.gene034446.t1 | MTR_4g052390 | 25.325 | 308 | 188 | 7 | 21 | 300 | 43 | 336 | 1.79e-15 | 76.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene034446.t1 | AT2G27450 | 86.735 | 294 | 39 | 0 | 3 | 296 | 4 | 297 | 0.0 | 545 |
MS.gene034446.t1 | AT2G27450 | 79.439 | 321 | 39 | 1 | 3 | 296 | 4 | 324 | 0.0 | 531 |
MS.gene034446.t1 | AT2G27450 | 88.991 | 218 | 24 | 0 | 79 | 296 | 1 | 218 | 1.16e-147 | 413 |
MS.gene034446.t1 | AT5G64370 | 29.057 | 265 | 168 | 7 | 40 | 292 | 129 | 385 | 3.56e-21 | 93.2 |
MS.gene034446.t1 | AT5G12040 | 25.170 | 294 | 191 | 8 | 8 | 291 | 87 | 361 | 9.11e-21 | 91.7 |
MS.gene034446.t1 | AT5G22300 | 24.832 | 298 | 182 | 7 | 21 | 290 | 49 | 332 | 8.89e-14 | 71.2 |
Find 69 sgRNAs with CRISPR-Local
Find 230 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCCGGGTGACACTGGATTTA+AGG | 0.155753 | 2.3:+12364948 | MS.gene034446:CDS |
CAGACAAAATATGCGAAAAT+TGG | 0.189891 | 2.3:+12365074 | MS.gene034446:CDS |
TGCAAACATTGTTCTCATTC+AGG | 0.253484 | 2.3:+12364298 | MS.gene034446:CDS |
TTGCTGGGATCAGTGGTTTC+CGG | 0.268695 | 2.3:+12365938 | MS.gene034446:CDS |
AATTGTAGGATGGTCCTTAT+AGG | 0.278801 | 2.3:-12364477 | None:intergenic |
TATTGCATACCTGGTCCATC+TGG | 0.354713 | 2.3:-12364833 | None:intergenic |
CAGAAACTTGCTAAAGAGTT+AGG | 0.368694 | 2.3:+12364698 | MS.gene034446:CDS |
TCAAAGAGCTAAGCCCTATA+AGG | 0.374926 | 2.3:+12364463 | MS.gene034446:CDS |
TTGTTGTGTCAGCTATTTGC+TGG | 0.383419 | 2.3:+12365922 | MS.gene034446:intron |
TTTCAATGAACAGGGCCTAC+TGG | 0.401852 | 2.3:+12366716 | MS.gene034446:intron |
CAAATCCATGAGACATTGTT+GGG | 0.413127 | 2.3:+12366808 | MS.gene034446:CDS |
ACCTCCTCAAAGAAGCTAAC+TGG | 0.413813 | 2.3:-12364731 | None:intergenic |
GCCATTGCGCGGGCTGCCTC+CGG | 0.416982 | 2.3:-12365957 | None:intergenic |
CATACCAGTTAGCTTCTTTG+AGG | 0.417467 | 2.3:+12364727 | MS.gene034446:CDS |
TGTTCCATCAGCATCAATAA+TGG | 0.419866 | 2.3:-12364780 | None:intergenic |
ATTGTAGGATGGTCCTTATA+GGG | 0.423765 | 2.3:-12364476 | None:intergenic |
GCCCGCGCAATGGCACTTCA+AGG | 0.433445 | 2.3:+12365966 | MS.gene034446:CDS |
AGGACATGCTGGGGCCAATC+TGG | 0.439477 | 2.3:+12366079 | MS.gene034446:CDS |
TGAAGGTTATTACTTCTGTC+AGG | 0.442035 | 2.3:+12364421 | MS.gene034446:CDS |
CGAGTAATGCAAGGACATGC+TGG | 0.447669 | 2.3:+12366068 | MS.gene034446:CDS |
GATGCTGATGGAACAGATCT+TGG | 0.450884 | 2.3:+12364788 | MS.gene034446:CDS |
TACCTCTCGTTGCTTCAAAT+AGG | 0.454203 | 2.3:+12366478 | MS.gene034446:CDS |
ATGTTTATCTATCACAGAAC+AGG | 0.458883 | 2.3:-12366893 | None:intergenic |
TTCAATTGCTGATGATAAAG+AGG | 0.462176 | 2.3:+12366748 | MS.gene034446:CDS |
TAATTTCAGGAACTCTTTGA+AGG | 0.466678 | 2.3:+12364404 | MS.gene034446:intron |
TATTTCCCGGACAGGTTATG+AGG | 0.475155 | 2.3:+12364909 | MS.gene034446:intron |
CCTTTCGGCAGTGGCAACAT+TGG | 0.480012 | 2.3:-12363160 | None:intergenic |
TCAAATCCATGAGACATTGT+TGG | 0.483123 | 2.3:+12366807 | MS.gene034446:CDS |
TATGGAAACTCCTTCATAGC+AGG | 0.484999 | 2.3:+12366552 | MS.gene034446:CDS |
TTCGGCAGTGGCAACATTGG+TGG | 0.486115 | 2.3:-12363157 | None:intergenic |
AAAAGCACCTTATATAGATC+TGG | 0.486523 | 2.3:-12366851 | None:intergenic |
ATTGCCATTATTGATGCTGA+TGG | 0.488116 | 2.3:+12364776 | MS.gene034446:CDS |
CACCTTGAAGTGCCATTGCG+CGG | 0.494481 | 2.3:-12365968 | None:intergenic |
CAGCTATTTGCTGGGATCAG+TGG | 0.496731 | 2.3:+12365931 | MS.gene034446:intron |
TCGGCGTCCAGATCTATATA+AGG | 0.496993 | 2.3:+12366844 | MS.gene034446:CDS |
GATCAAATTACCTGCTATGA+AGG | 0.504190 | 2.3:-12366562 | None:intergenic |
TCCGGAGGCAGCCCGCGCAA+TGG | 0.510762 | 2.3:+12365956 | MS.gene034446:CDS |
GCATCGACTCTCGTGACCAT+TGG | 0.513796 | 2.3:+12366042 | MS.gene034446:CDS |
ACCTTGAAGTGCCATTGCGC+GGG | 0.520308 | 2.3:-12365967 | None:intergenic |
AGAAGAAAACCTTTCGGCAG+TGG | 0.524773 | 2.3:-12363169 | None:intergenic |
ACCTTAAATCCAGTGTCACC+CGG | 0.533337 | 2.3:-12364949 | None:intergenic |
GAGTAATGCAAGGACATGCT+GGG | 0.535826 | 2.3:+12366069 | MS.gene034446:CDS |
TGTTGTGTCAGCTATTTGCT+GGG | 0.536933 | 2.3:+12365923 | MS.gene034446:intron |
ACCAGTTAGCTTCTTTGAGG+AGG | 0.543972 | 2.3:+12364730 | MS.gene034446:CDS |
TTTACCTCATAATTGTAGGA+TGG | 0.545792 | 2.3:-12364487 | None:intergenic |
AGGACCATCCTACAATTATG+AGG | 0.546117 | 2.3:+12364483 | MS.gene034446:CDS |
GTATTCAAAACCTACCAGAT+TGG | 0.546414 | 2.3:-12366093 | None:intergenic |
CTTGCATTACTCGTTTCCAA+TGG | 0.554516 | 2.3:-12366058 | None:intergenic |
ATAGATCTGGACGCCGATCA+CGG | 0.561387 | 2.3:-12366838 | None:intergenic |
CTCGTTGCTTCAAATAGGAT+AGG | 0.564320 | 2.3:+12366483 | MS.gene034446:CDS |
ATTGAAACAATTTCTCCAGT+AGG | 0.566915 | 2.3:-12366731 | None:intergenic |
GAGATAATTGAGACTGAGCA+TGG | 0.567029 | 2.3:+12366510 | MS.gene034446:CDS |
AGAAAATCTCATATCCCAGA+TGG | 0.576989 | 2.3:+12364818 | MS.gene034446:CDS |
ATTGCATACCTGGTCCATCT+GGG | 0.579627 | 2.3:-12364832 | None:intergenic |
ATATGGCGGAAGACAAGTGT+AGG | 0.585504 | 2.3:+12363088 | None:intergenic |
GGTTCAGATCCAATAGCAGT+TGG | 0.587493 | 2.3:-12366008 | None:intergenic |
TCTCATATCCCAGATGGACC+AGG | 0.596870 | 2.3:+12364824 | MS.gene034446:CDS |
GAGTCGATGCTTTGATCGTG+AGG | 0.598651 | 2.3:-12366029 | None:intergenic |
AACATTGGTGGAGACATCAT+CGG | 0.608254 | 2.3:-12363145 | None:intergenic |
CCAATGTTGCCACTGCCGAA+AGG | 0.615196 | 2.3:+12363160 | MS.gene034446:CDS |
CTGGGATCAGTGGTTTCCGG+AGG | 0.619228 | 2.3:+12365941 | MS.gene034446:CDS |
AAATATGCGAAAATTGGAGT+CGG | 0.626091 | 2.3:+12365080 | MS.gene034446:CDS |
AAATCCATGAGACATTGTTG+GGG | 0.649736 | 2.3:+12366809 | MS.gene034446:CDS |
CATTGGAAACGAGTAATGCA+AGG | 0.668958 | 2.3:+12366059 | MS.gene034446:CDS |
ATCCTATTTGAAGCAACGAG+AGG | 0.673143 | 2.3:-12366480 | None:intergenic |
AGTAATGCAAGGACATGCTG+GGG | 0.682337 | 2.3:+12366070 | MS.gene034446:CDS |
ATCCATGAGACATTGTTGGG+GGG | 0.692006 | 2.3:+12366811 | MS.gene034446:CDS |
AATCCATGAGACATTGTTGG+GGG | 0.693301 | 2.3:+12366810 | MS.gene034446:CDS |
GGTGCAAGCAAATTGAAGAG+CGG | 0.709082 | 2.3:-12363124 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTATATATAAATTTATTTAT+AGG | + | chr2.3:12366339-12366358 | MS.gene034446:intron | 0.0% |
!! | ATTATAACAATGAATTATAT+GGG | - | chr2.3:12363225-12363244 | None:intergenic | 10.0% |
!!! | TATATTTTTGTTTATAATGT+GGG | + | chr2.3:12366133-12366152 | MS.gene034446:intron | 10.0% |
!!! | TTACTTTTTTAAAAAGAATT+GGG | - | chr2.3:12364171-12364190 | None:intergenic | 10.0% |
!!! | TTTACTTTTTTAAAAAGAAT+TGG | - | chr2.3:12364172-12364191 | None:intergenic | 10.0% |
!! | ATTATAAACAAAAATATAGG+TGG | - | chr2.3:12366131-12366150 | None:intergenic | 15.0% |
!! | CACATTATAAACAAAAATAT+AGG | - | chr2.3:12366134-12366153 | None:intergenic | 15.0% |
!! | GACTTTAAATTAAGTTAAAA+AGG | - | chr2.3:12366383-12366402 | None:intergenic | 15.0% |
!! | GATTATAACAATGAATTATA+TGG | - | chr2.3:12363226-12363245 | None:intergenic | 15.0% |
!! | TAATCTGATGAATTAATTAT+GGG | + | chr2.3:12366446-12366465 | MS.gene034446:intron | 15.0% |
!! | TCAATATTAGATAATGTTTA+TGG | - | chr2.3:12365026-12365045 | None:intergenic | 15.0% |
!!! | ATATATGAAAACTTTAAAAC+TGG | - | chr2.3:12363357-12363376 | None:intergenic | 15.0% |
!!! | ATTTGAAATTGAGTTAATTT+TGG | + | chr2.3:12363255-12363274 | MS.gene034446:intron | 15.0% |
!!! | CTATATTTTTGTTTATAATG+TGG | + | chr2.3:12366132-12366151 | MS.gene034446:intron | 15.0% |
!!! | CTTTATTTTATCTTTTCTTA+TGG | + | chr2.3:12364012-12364031 | MS.gene034446:intron | 15.0% |
!!! | TATATGAAAACTTTAAAACT+GGG | - | chr2.3:12363356-12363375 | None:intergenic | 15.0% |
!! | AATATATTCACTCTACATAA+TGG | - | chr2.3:12365440-12365459 | None:intergenic | 20.0% |
!! | ACATATGCTTTGTATTTATA+GGG | - | chr2.3:12365413-12365432 | None:intergenic | 20.0% |
!! | ATCAAAAAACTTTAGTTAGA+AGG | - | chr2.3:12364144-12364163 | None:intergenic | 20.0% |
!! | ATGGATAACTTAAGAAAATA+AGG | + | chr2.3:12365282-12365301 | MS.gene034446:intron | 20.0% |
!! | CATAATTAATTCATCAGATT+AGG | - | chr2.3:12366447-12366466 | None:intergenic | 20.0% |
!! | CTAATCTGATGAATTAATTA+TGG | + | chr2.3:12366445-12366464 | MS.gene034446:intron | 20.0% |
!! | TAACTAATTGTATTATTTCC+CGG | + | chr2.3:12364896-12364915 | MS.gene034446:intron | 20.0% |
!! | TATCAAGAAATTCAAAATGA+AGG | - | chr2.3:12363808-12363827 | None:intergenic | 20.0% |
!!! | AAAAGTGAGATAAAGTTTTA+TGG | + | chr2.3:12366534-12366553 | MS.gene034446:CDS | 20.0% |
!!! | AACTTAATTTAAAGTCAAAC+AGG | + | chr2.3:12366387-12366406 | MS.gene034446:intron | 20.0% |
!!! | CAATTAATTTTTCTTACGAA+AGG | - | chr2.3:12365897-12365916 | None:intergenic | 20.0% |
!!! | CATTATGTTTTTTTTGCTTA+TGG | + | chr2.3:12365119-12365138 | MS.gene034446:intron | 20.0% |
!!! | TTATTTTACCTCATAATTGT+AGG | - | chr2.3:12364494-12364513 | None:intergenic | 20.0% |
! | AAAATGTTAATGAGATGATG+CGG | - | chr2.3:12363381-12363400 | None:intergenic | 25.0% |
! | AAACAAAAATATAGGTGGTT+GGG | - | chr2.3:12366126-12366145 | None:intergenic | 25.0% |
! | AATTTGACTATGATTTAGGA+TGG | - | chr2.3:12363294-12363313 | None:intergenic | 25.0% |
! | ACAATGAATTATATGGGTAA+AGG | - | chr2.3:12363219-12363238 | None:intergenic | 25.0% |
! | AGGTAAAATAAGTGAAATTC+TGG | + | chr2.3:12364503-12364522 | MS.gene034446:intron | 25.0% |
! | ATCTATAGATTAATCAGTAG+AGG | + | chr2.3:12364201-12364220 | MS.gene034446:intron | 25.0% |
! | CATTAGTAATACAATTTCAG+TGG | + | chr2.3:12363421-12363440 | MS.gene034446:intron | 25.0% |
! | CTATTTAACAACTACTTCTA+AGG | - | chr2.3:12366258-12366277 | None:intergenic | 25.0% |
! | CTGAGAGAAAGAAATTTATT+TGG | + | chr2.3:12366312-12366331 | MS.gene034446:intron | 25.0% |
! | CTTAAGAAGAGTTTATAAAG+AGG | - | chr2.3:12365809-12365828 | None:intergenic | 25.0% |
! | GAACTTAGTATGAATAAATG+TGG | - | chr2.3:12366673-12366692 | None:intergenic | 25.0% |
! | GACATATGCTTTGTATTTAT+AGG | - | chr2.3:12365414-12365433 | None:intergenic | 25.0% |
! | TAAACAAAAATATAGGTGGT+TGG | - | chr2.3:12366127-12366146 | None:intergenic | 25.0% |
! | TATGCTATAAGCACTTAATT+AGG | + | chr2.3:12364072-12364091 | MS.gene034446:intron | 25.0% |
! | TTAATTCATCAGATTAGGAA+AGG | - | chr2.3:12366442-12366461 | None:intergenic | 25.0% |
!! | AATTTTTCTTACGAAAGGAT+TGG | - | chr2.3:12365892-12365911 | None:intergenic | 25.0% |
!! | TTTTCATCTTTCAGTTAGTT+AGG | + | chr2.3:12365608-12365627 | MS.gene034446:intron | 25.0% |
!!! | ATATAAGGTGCTTTTAACTT+TGG | + | chr2.3:12366859-12366878 | MS.gene034446:CDS | 25.0% |
!!! | GAAAAGTTCTATTTTAATCC+GGG | + | chr2.3:12364931-12364950 | MS.gene034446:CDS | 25.0% |
!!! | GGAAAAGTTCTATTTTAATC+CGG | + | chr2.3:12364930-12364949 | MS.gene034446:CDS | 25.0% |
!!! | GTTTTTTTTTTTTCCCAAAC+AGG | + | chr2.3:12365046-12365065 | MS.gene034446:intron | 25.0% |
!!! | TTATTTTATCCAACTGCTAT+TGG | + | chr2.3:12365999-12366018 | MS.gene034446:CDS | 25.0% |
AAATATGCGAAAATTGGAGT+CGG | + | chr2.3:12365080-12365099 | MS.gene034446:CDS | 30.0% | |
AACAAAAATATAGGTGGTTG+GGG | - | chr2.3:12366125-12366144 | None:intergenic | 30.0% | |
AAGAAGAGTTTATAAAGAGG+AGG | - | chr2.3:12365806-12365825 | None:intergenic | 30.0% | |
ACTAAGTTGTTTATCCATAC+AGG | - | chr2.3:12365146-12365165 | None:intergenic | 30.0% | |
AGTTTGGAAAAACACTACTA+GGG | - | chr2.3:12364347-12364366 | None:intergenic | 30.0% | |
ATTGAAACAATTTCTCCAGT+AGG | - | chr2.3:12366734-12366753 | None:intergenic | 30.0% | |
CACAAGATAGAAACATTAAC+TGG | - | chr2.3:12363717-12363736 | None:intergenic | 30.0% | |
CAGACAAAATATGCGAAAAT+TGG | + | chr2.3:12365074-12365093 | MS.gene034446:CDS | 30.0% | |
CCAAACAGAATCTTAATCTA+TGG | + | chr2.3:12363603-12363622 | MS.gene034446:intron | 30.0% | |
CCATAGATTAAGATTCTGTT+TGG | - | chr2.3:12363606-12363625 | None:intergenic | 30.0% | |
CTAAGTTGTTTATCCATACA+GGG | - | chr2.3:12365145-12365164 | None:intergenic | 30.0% | |
CTGCTTCTTGTATACTATAA+TGG | + | chr2.3:12363656-12363675 | MS.gene034446:intron | 30.0% | |
GAATTAATTATGGGAAATGC+AGG | + | chr2.3:12366455-12366474 | MS.gene034446:intron | 30.0% | |
GAGATAAGAAGAAAACCTTT+CGG | - | chr2.3:12363178-12363197 | None:intergenic | 30.0% | |
GAGGAATTTGACTATGATTT+AGG | - | chr2.3:12363298-12363317 | None:intergenic | 30.0% | |
GGAGAGTTCAAATAATGAAT+AGG | - | chr2.3:12363685-12363704 | None:intergenic | 30.0% | |
TAAATACTTGTGACCTTGTT+CGG | - | chr2.3:12365353-12365372 | None:intergenic | 30.0% | |
TAATTTCAGGAACTCTTTGA+AGG | + | chr2.3:12364404-12364423 | MS.gene034446:intron | 30.0% | |
TACTTCAGTATAGCATATCA+TGG | - | chr2.3:12366287-12366306 | None:intergenic | 30.0% | |
TGTTTCAATGTGCATAATGT+AGG | + | chr2.3:12364672-12364691 | MS.gene034446:intron | 30.0% | |
TTCAATTGCTGATGATAAAG+AGG | + | chr2.3:12366748-12366767 | MS.gene034446:CDS | 30.0% | |
TTTACCTCATAATTGTAGGA+TGG | - | chr2.3:12364490-12364509 | None:intergenic | 30.0% | |
TTTGTATTTATAGGGTCTGT+TGG | - | chr2.3:12365405-12365424 | None:intergenic | 30.0% | |
! | AGAAGCAGTAATTTTGAATC+AGG | - | chr2.3:12363644-12363663 | None:intergenic | 30.0% |
! | CAATTTTCGCATATTTTGTC+TGG | - | chr2.3:12365076-12365095 | None:intergenic | 30.0% |
! | TCAAGATGAGCTTTTATCAA+TGG | - | chr2.3:12366634-12366653 | None:intergenic | 30.0% |
!! | AAAAGCACCTTATATAGATC+TGG | - | chr2.3:12366854-12366873 | None:intergenic | 30.0% |
!! | ACTTTTTCTTTTGCCATGTA+GGG | + | chr2.3:12363829-12363848 | MS.gene034446:intron | 30.0% |
AAAAAGAAGAGCTGTGAACA+TGG | - | chr2.3:12366216-12366235 | None:intergenic | 35.0% | |
AAATACTTGTGACCTTGTTC+GGG | - | chr2.3:12365352-12365371 | None:intergenic | 35.0% | |
AAATCCATGAGACATTGTTG+GGG | + | chr2.3:12366809-12366828 | MS.gene034446:CDS | 35.0% | |
AACATTAACTGGTGATCGTA+TGG | - | chr2.3:12363706-12363725 | None:intergenic | 35.0% | |
AAGCTATCATCCATAGGTTA+TGG | - | chr2.3:12363956-12363975 | None:intergenic | 35.0% | |
AATAACCAGTATTGCATACC+TGG | - | chr2.3:12364845-12364864 | None:intergenic | 35.0% | |
AATTCCTCAACTTGGTTACT+AGG | + | chr2.3:12363310-12363329 | MS.gene034446:intron | 35.0% | |
AATTGTAGGATGGTCCTTAT+AGG | - | chr2.3:12364480-12364499 | None:intergenic | 35.0% | |
AATTGTATTATTTCCCGGAC+AGG | + | chr2.3:12364901-12364920 | MS.gene034446:intron | 35.0% | |
ACAGCTTATAGACATGTCAT+AGG | - | chr2.3:12363919-12363938 | None:intergenic | 35.0% | |
ACTGATGCATGACTAATTTC+AGG | + | chr2.3:12364391-12364410 | MS.gene034446:intron | 35.0% | |
AGAAAATCTCATATCCCAGA+TGG | + | chr2.3:12364818-12364837 | MS.gene034446:CDS | 35.0% | |
AGAATCTTATCTATCCGATG+TGG | + | chr2.3:12365827-12365846 | MS.gene034446:intron | 35.0% | |
AGCAAAGCTAAAGTCAAAAC+TGG | - | chr2.3:12365508-12365527 | None:intergenic | 35.0% | |
ATTATTGCGGTTCTGTTCAA+GGG | + | chr2.3:12364581-12364600 | MS.gene034446:intron | 35.0% | |
ATTCCTCAACTTGGTTACTA+GGG | + | chr2.3:12363311-12363330 | MS.gene034446:intron | 35.0% | |
ATTGCCATTATTGATGCTGA+TGG | + | chr2.3:12364776-12364795 | MS.gene034446:CDS | 35.0% | |
ATTGTAGGATGGTCCTTATA+GGG | - | chr2.3:12364479-12364498 | None:intergenic | 35.0% | |
CAAATCCATGAGACATTGTT+GGG | + | chr2.3:12366808-12366827 | MS.gene034446:CDS | 35.0% | |
CAATTCAAACATACCCTACA+TGG | - | chr2.3:12363845-12363864 | None:intergenic | 35.0% | |
CAGTTTGGAAAAACACTACT+AGG | - | chr2.3:12364348-12364367 | None:intergenic | 35.0% | |
CATAGTCAAATTCCTCAACT+TGG | + | chr2.3:12363302-12363321 | MS.gene034446:intron | 35.0% | |
CTAACTCATCCTTACAAAAC+CGG | + | chr2.3:12365762-12365781 | MS.gene034446:intron | 35.0% | |
GAATCTTATCTATCCGATGT+GGG | + | chr2.3:12365828-12365847 | MS.gene034446:intron | 35.0% | |
GAGCTTATTTCCATAACCTA+TGG | + | chr2.3:12363943-12363962 | MS.gene034446:intron | 35.0% | |
GAGGACTTGAAACATTATTG+CGG | + | chr2.3:12364568-12364587 | MS.gene034446:intron | 35.0% | |
GATCAAATTACCTGCTATGA+AGG | - | chr2.3:12366565-12366584 | None:intergenic | 35.0% | |
GCAAAGCTAAAGTCAAAACT+GGG | - | chr2.3:12365507-12365526 | None:intergenic | 35.0% | |
GTATTCAAAACCTACCAGAT+TGG | - | chr2.3:12366096-12366115 | None:intergenic | 35.0% | |
GTTCGAGATGCTCATAAAAA+AGG | + | chr2.3:12364275-12364294 | MS.gene034446:CDS | 35.0% | |
GTTTGGAAAAACACTACTAG+GGG | - | chr2.3:12364346-12364365 | None:intergenic | 35.0% | |
TAGGACTGTAACGAATATCA+AGG | + | chr2.3:12365738-12365757 | MS.gene034446:intron | 35.0% | |
TATAGGCAAAATTGCATCAG+AGG | + | chr2.3:12366356-12366375 | MS.gene034446:intron | 35.0% | |
TCAAATCCATGAGACATTGT+TGG | + | chr2.3:12366807-12366826 | MS.gene034446:CDS | 35.0% | |
TGAAGGTTATTACTTCTGTC+AGG | + | chr2.3:12364421-12364440 | MS.gene034446:CDS | 35.0% | |
TGCAAACATTGTTCTCATTC+AGG | + | chr2.3:12364298-12364317 | MS.gene034446:CDS | 35.0% | |
TGTTCATTGAAAGAAAAGCC+AGG | - | chr2.3:12366708-12366727 | None:intergenic | 35.0% | |
TGTTCCATCAGCATCAATAA+TGG | - | chr2.3:12364783-12364802 | None:intergenic | 35.0% | |
TTGAAAGAAAAGCCAGGAAA+AGG | - | chr2.3:12366702-12366721 | None:intergenic | 35.0% | |
TTTCACAAGCTATCATCCAT+AGG | - | chr2.3:12363962-12363981 | None:intergenic | 35.0% | |
TTTGGAAAAACACTACTAGG+GGG | - | chr2.3:12364345-12364364 | None:intergenic | 35.0% | |
TTTGTCTGGAAAACCTGTTT+GGG | - | chr2.3:12365062-12365081 | None:intergenic | 35.0% | |
! | AAAAATGCTTGTTAGAGTCG+TGG | - | chr2.3:12365484-12365503 | None:intergenic | 35.0% |
! | AAGTTCTCTTTTCCTTTTCC+TGG | + | chr2.3:12366687-12366706 | MS.gene034446:intron | 35.0% |
! | CAATAATGTTTCAAGTCCTC+TGG | - | chr2.3:12364568-12364587 | None:intergenic | 35.0% |
! | GACTATGATTTAGGATGGAA+GGG | - | chr2.3:12363289-12363308 | None:intergenic | 35.0% |
! | GCTCTTTTCATAAGCTATCA+TGG | + | chr2.3:12365263-12365282 | MS.gene034446:intron | 35.0% |
! | GGCTTTTCTTTCAATGAACA+GGG | + | chr2.3:12366708-12366727 | MS.gene034446:intron | 35.0% |
! | TACTTCTAAGGAGTTCAAGA+CGG | - | chr2.3:12366246-12366265 | None:intergenic | 35.0% |
! | TAGAATTTTGCTCCTGTTCT+TGG | + | chr2.3:12363775-12363794 | MS.gene034446:intron | 35.0% |
! | TATAAGAGTGTGAGAGAGAA+AGG | - | chr2.3:12366178-12366197 | None:intergenic | 35.0% |
! | TCTATAAGTTTTCCCGAACA+AGG | + | chr2.3:12365337-12365356 | MS.gene034446:intron | 35.0% |
! | TGACTATGATTTAGGATGGA+AGG | - | chr2.3:12363290-12363309 | None:intergenic | 35.0% |
! | TGGCTTTTCTTTCAATGAAC+AGG | + | chr2.3:12366707-12366726 | MS.gene034446:intron | 35.0% |
! | TTTTGTCTGGAAAACCTGTT+TGG | - | chr2.3:12365063-12365082 | None:intergenic | 35.0% |
!! | CAGAAACTTGCTAAAGAGTT+AGG | + | chr2.3:12364698-12364717 | MS.gene034446:CDS | 35.0% |
!! | CATTTGTTTCTGTTCCGTAA+AGG | - | chr2.3:12366600-12366619 | None:intergenic | 35.0% |
!! | GACTTTTTCTTTTGCCATGT+AGG | + | chr2.3:12363828-12363847 | MS.gene034446:intron | 35.0% |
!! | TGAAAACTTTAAAACTGGGC+AGG | - | chr2.3:12363352-12363371 | None:intergenic | 35.0% |
!!! | AAGGTGCTTTTAACTTTGGA+CGG | + | chr2.3:12366863-12366882 | MS.gene034446:CDS | 35.0% |
!!! | TGTTAGAGTCGTGGTTTTTT+GGG | - | chr2.3:12365475-12365494 | None:intergenic | 35.0% |
!!! | TTGTTAGAGTCGTGGTTTTT+TGG | - | chr2.3:12365476-12365495 | None:intergenic | 35.0% |
AACATTGGTGGAGACATCAT+CGG | - | chr2.3:12363148-12363167 | None:intergenic | 40.0% | |
AATCCATGAGACATTGTTGG+GGG | + | chr2.3:12366810-12366829 | MS.gene034446:CDS | 40.0% | |
AGGACCATCCTACAATTATG+AGG | + | chr2.3:12364483-12364502 | MS.gene034446:CDS | 40.0% | |
ATACCCTAGTAACCAAGTTG+AGG | - | chr2.3:12363317-12363336 | None:intergenic | 40.0% | |
CAGGTTTCATATTAGAACCC+TGG | + | chr2.3:12364317-12364336 | MS.gene034446:intron | 40.0% | |
CATTATTGCGGTTCTGTTCA+AGG | + | chr2.3:12364580-12364599 | MS.gene034446:intron | 40.0% | |
CATTGGAAACGAGTAATGCA+AGG | + | chr2.3:12366059-12366078 | MS.gene034446:CDS | 40.0% | |
CTCGTTGCTTCAAATAGGAT+AGG | + | chr2.3:12366483-12366502 | MS.gene034446:CDS | 40.0% | |
CTTGCATTACTCGTTTCCAA+TGG | - | chr2.3:12366061-12366080 | None:intergenic | 40.0% | |
GAGATAATTGAGACTGAGCA+TGG | + | chr2.3:12366510-12366529 | MS.gene034446:CDS | 40.0% | |
TAAGCACTTGCGATACTGAT+TGG | + | chr2.3:12363496-12363515 | MS.gene034446:intron | 40.0% | |
TACCTCTCGTTGCTTCAAAT+AGG | + | chr2.3:12366478-12366497 | MS.gene034446:CDS | 40.0% | |
TATGGAAACTCCTTCATAGC+AGG | + | chr2.3:12366552-12366571 | MS.gene034446:CDS | 40.0% | |
TCAAAGAGCTAAGCCCTATA+AGG | + | chr2.3:12364463-12364482 | MS.gene034446:CDS | 40.0% | |
TGTTGTGTCAGCTATTTGCT+GGG | + | chr2.3:12365923-12365942 | MS.gene034446:intron | 40.0% | |
TTGTTGTGTCAGCTATTTGC+TGG | + | chr2.3:12365922-12365941 | MS.gene034446:intron | 40.0% | |
! | AAGCACTTGCGATACTGATT+GGG | + | chr2.3:12363497-12363516 | MS.gene034446:intron | 40.0% |
! | AATGTTTCAAGTCCTCTGGT+TGG | - | chr2.3:12364564-12364583 | None:intergenic | 40.0% |
! | ACTTTTCCTCATAACCTGTC+CGG | - | chr2.3:12364918-12364937 | None:intergenic | 40.0% |
! | ATCCTATTTGAAGCAACGAG+AGG | - | chr2.3:12366483-12366502 | None:intergenic | 40.0% |
! | CATACCAGTTAGCTTCTTTG+AGG | + | chr2.3:12364727-12364746 | MS.gene034446:CDS | 40.0% |
! | GAGTCGGTAAGAACTTTTCT+TGG | + | chr2.3:12365096-12365115 | MS.gene034446:intron | 40.0% |
! | TTTTTGCTTATGGCCCTGTA+TGG | + | chr2.3:12365129-12365148 | MS.gene034446:intron | 40.0% |
!! | CCAAACTGTTTCTGTGTGTT+GGG | + | chr2.3:12364360-12364379 | MS.gene034446:intron | 40.0% |
!! | CGGTTTTGTAAGGATGAGTT+AGG | - | chr2.3:12365764-12365783 | None:intergenic | 40.0% |
!! | TCCAAACTGTTTCTGTGTGT+TGG | + | chr2.3:12364359-12364378 | MS.gene034446:intron | 40.0% |
!!! | TATTTTAATCCGGGTGACAC+TGG | + | chr2.3:12364940-12364959 | MS.gene034446:CDS | 40.0% |
ACCTCCTCAAAGAAGCTAAC+TGG | - | chr2.3:12364734-12364753 | None:intergenic | 45.0% | |
ACCTTAAATCCAGTGTCACC+CGG | - | chr2.3:12364952-12364971 | None:intergenic | 45.0% | |
ACTAAATCCCACCCTAGTGT+TGG | + | chr2.3:12365851-12365870 | MS.gene034446:intron | 45.0% | |
AGAAGAAAACCTTTCGGCAG+TGG | - | chr2.3:12363172-12363191 | None:intergenic | 45.0% | |
AGTAATGCAAGGACATGCTG+GGG | + | chr2.3:12366070-12366089 | MS.gene034446:CDS | 45.0% | |
ATCCATGAGACATTGTTGGG+GGG | + | chr2.3:12366811-12366830 | MS.gene034446:CDS | 45.0% | |
ATGGACCAGGTATGCAATAC+TGG | + | chr2.3:12364837-12364856 | MS.gene034446:intron | 45.0% | |
ATTGCATACCTGGTCCATCT+GGG | - | chr2.3:12364835-12364854 | None:intergenic | 45.0% | |
CCCAACACACAGAAACAGTT+TGG | - | chr2.3:12364363-12364382 | None:intergenic | 45.0% | |
GAAGGTCATGTACCAAGAAC+AGG | - | chr2.3:12363790-12363809 | None:intergenic | 45.0% | |
GAGTAATGCAAGGACATGCT+GGG | + | chr2.3:12366069-12366088 | MS.gene034446:CDS | 45.0% | |
GATGCTGATGGAACAGATCT+TGG | + | chr2.3:12364788-12364807 | MS.gene034446:CDS | 45.0% | |
GGTGCAAGCAAATTGAAGAG+CGG | - | chr2.3:12363127-12363146 | None:intergenic | 45.0% | |
GGTTCAGATCCAATAGCAGT+TGG | - | chr2.3:12366011-12366030 | None:intergenic | 45.0% | |
TATTGCATACCTGGTCCATC+TGG | - | chr2.3:12364836-12364855 | None:intergenic | 45.0% | |
TATTTCCCGGACAGGTTATG+AGG | + | chr2.3:12364909-12364928 | MS.gene034446:intron | 45.0% | |
TCGAGCAACTGTGTCCTTTA+CGG | + | chr2.3:12366583-12366602 | MS.gene034446:intron | 45.0% | |
TCGGCGTCCAGATCTATATA+AGG | + | chr2.3:12366844-12366863 | MS.gene034446:CDS | 45.0% | |
TTTCAATGAACAGGGCCTAC+TGG | + | chr2.3:12366716-12366735 | MS.gene034446:intron | 45.0% | |
! | AAGAGTGTGAGAGAGAAAGG+AGG | - | chr2.3:12366175-12366194 | None:intergenic | 45.0% |
! | ACCAGTTAGCTTCTTTGAGG+AGG | + | chr2.3:12364730-12364749 | MS.gene034446:CDS | 45.0% |
! | ACTGGATTTAAGGTGGGTGT+TGG | + | chr2.3:12364958-12364977 | MS.gene034446:intron | 45.0% |
! | CTGGATTTAAGGTGGGTGTT+GGG | + | chr2.3:12364959-12364978 | MS.gene034446:intron | 45.0% |
! | CTTTTCCTCATAACCTGTCC+GGG | - | chr2.3:12364917-12364936 | None:intergenic | 45.0% |
! | GGTGACACTGGATTTAAGGT+GGG | + | chr2.3:12364952-12364971 | MS.gene034446:intron | 45.0% |
!! | CCTTACAAAACCGGCTTGTA+CGG | + | chr2.3:12365771-12365790 | MS.gene034446:intron | 45.0% |
AAACACTACTAGGGGGAACC+AGG | - | chr2.3:12364338-12364357 | None:intergenic | 50.0% | |
AACACTACTAGGGGGAACCA+GGG | - | chr2.3:12364337-12364356 | None:intergenic | 50.0% | |
ATAGATCTGGACGCCGATCA+CGG | - | chr2.3:12366841-12366860 | None:intergenic | 50.0% | |
CGAGTAATGCAAGGACATGC+TGG | + | chr2.3:12366068-12366087 | MS.gene034446:CDS | 50.0% | |
GAGTCGATGCTTTGATCGTG+AGG | - | chr2.3:12366032-12366051 | None:intergenic | 50.0% | |
GGGTGACACTGGATTTAAGG+TGG | + | chr2.3:12364951-12364970 | MS.gene034446:intron | 50.0% | |
GGTGGGATTTAGTCCCACAT+CGG | - | chr2.3:12365844-12365863 | None:intergenic | 50.0% | |
TACCCCCCAACAATGTCTCA+TGG | - | chr2.3:12366816-12366835 | None:intergenic | 50.0% | |
TCCGGGTGACACTGGATTTA+AGG | + | chr2.3:12364948-12364967 | MS.gene034446:CDS | 50.0% | |
TCTCATATCCCAGATGGACC+AGG | + | chr2.3:12364824-12364843 | MS.gene034446:CDS | 50.0% | |
TTCAAGTCCTCTGGTTGGCA+TGG | - | chr2.3:12364559-12364578 | None:intergenic | 50.0% | |
TTGCTGGGATCAGTGGTTTC+CGG | + | chr2.3:12365938-12365957 | MS.gene034446:CDS | 50.0% | |
! | CAGCTATTTGCTGGGATCAG+TGG | + | chr2.3:12365931-12365950 | MS.gene034446:intron | 50.0% |
!! | CCGTACAAGCCGGTTTTGTA+AGG | - | chr2.3:12365774-12365793 | None:intergenic | 50.0% |
CCAATGTTGCCACTGCCGAA+AGG | + | chr2.3:12363160-12363179 | MS.gene034446:CDS | 55.0% | |
CCTTTCGGCAGTGGCAACAT+TGG | - | chr2.3:12363163-12363182 | None:intergenic | 55.0% | |
CTTGTTCGCGGCCAACACTA+GGG | - | chr2.3:12365865-12365884 | None:intergenic | 55.0% | |
TTCGGCAGTGGCAACATTGG+TGG | - | chr2.3:12363160-12363179 | None:intergenic | 55.0% | |
! | ACCTTGAAGTGCCATTGCGC+GGG | - | chr2.3:12365970-12365989 | None:intergenic | 55.0% |
! | AGGATTGGCGTCCTTGTTCG+CGG | - | chr2.3:12365877-12365896 | None:intergenic | 55.0% |
! | CACCTTGAAGTGCCATTGCG+CGG | - | chr2.3:12365971-12365990 | None:intergenic | 55.0% |
!! | CAAAACCGGCTTGTACGGTG+AGG | + | chr2.3:12365776-12365795 | MS.gene034446:intron | 55.0% |
!! | GCATCGACTCTCGTGACCAT+TGG | + | chr2.3:12366042-12366061 | MS.gene034446:CDS | 55.0% |
!! | GTTGGGGGGTATTCCGTGAT+CGG | + | chr2.3:12366825-12366844 | MS.gene034446:CDS | 55.0% |
AGGACATGCTGGGGCCAATC+TGG | + | chr2.3:12366079-12366098 | MS.gene034446:CDS | 60.0% | |
CATGCTGGGGCCAATCTGGT+AGG | + | chr2.3:12366083-12366102 | MS.gene034446:intron | 60.0% | |
CCTTGTTCGCGGCCAACACT+AGG | - | chr2.3:12365866-12365885 | None:intergenic | 60.0% | |
CTGGGATCAGTGGTTTCCGG+AGG | + | chr2.3:12365941-12365960 | MS.gene034446:CDS | 60.0% | |
GCACTCCTCACCGTACAAGC+CGG | - | chr2.3:12365784-12365803 | None:intergenic | 60.0% | |
GCTGCTTCCATGCCAACCAG+AGG | + | chr2.3:12364549-12364568 | MS.gene034446:intron | 60.0% | |
TTCGCGGCCAACACTAGGGT+GGG | - | chr2.3:12365861-12365880 | None:intergenic | 60.0% | |
!! | CCTAGTGTTGGCCGCGAACA+AGG | + | chr2.3:12365863-12365882 | MS.gene034446:intron | 60.0% |
GCCCGCGCAATGGCACTTCA+AGG | + | chr2.3:12365966-12365985 | MS.gene034446:CDS | 65.0% | |
GTTCGCGGCCAACACTAGGG+TGG | - | chr2.3:12365862-12365881 | None:intergenic | 65.0% | |
TCCGGAGGCAGCCCGCGCAA+TGG | + | chr2.3:12365956-12365975 | MS.gene034446:CDS | 75.0% | |
! | GCCATTGCGCGGGCTGCCTC+CGG | - | chr2.3:12365960-12365979 | None:intergenic | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.3 | gene | 12363090 | 12366904 | 12363090 | ID=MS.gene034446 |
chr2.3 | mRNA | 12363090 | 12366904 | 12363090 | ID=MS.gene034446.t1;Parent=MS.gene034446 |
chr2.3 | exon | 12363090 | 12363181 | 12363090 | ID=MS.gene034446.t1.exon1;Parent=MS.gene034446.t1 |
chr2.3 | CDS | 12363090 | 12363181 | 12363090 | ID=cds.MS.gene034446.t1;Parent=MS.gene034446.t1 |
chr2.3 | exon | 12364271 | 12364319 | 12364271 | ID=MS.gene034446.t1.exon2;Parent=MS.gene034446.t1 |
chr2.3 | CDS | 12364271 | 12364319 | 12364271 | ID=cds.MS.gene034446.t1;Parent=MS.gene034446.t1 |
chr2.3 | exon | 12364413 | 12364504 | 12364413 | ID=MS.gene034446.t1.exon3;Parent=MS.gene034446.t1 |
chr2.3 | CDS | 12364413 | 12364504 | 12364413 | ID=cds.MS.gene034446.t1;Parent=MS.gene034446.t1 |
chr2.3 | exon | 12364694 | 12364845 | 12364694 | ID=MS.gene034446.t1.exon4;Parent=MS.gene034446.t1 |
chr2.3 | CDS | 12364694 | 12364845 | 12364694 | ID=cds.MS.gene034446.t1;Parent=MS.gene034446.t1 |
chr2.3 | exon | 12364923 | 12364969 | 12364923 | ID=MS.gene034446.t1.exon5;Parent=MS.gene034446.t1 |
chr2.3 | CDS | 12364923 | 12364969 | 12364923 | ID=cds.MS.gene034446.t1;Parent=MS.gene034446.t1 |
chr2.3 | exon | 12365068 | 12365101 | 12365068 | ID=MS.gene034446.t1.exon6;Parent=MS.gene034446.t1 |
chr2.3 | CDS | 12365068 | 12365101 | 12365068 | ID=cds.MS.gene034446.t1;Parent=MS.gene034446.t1 |
chr2.3 | exon | 12365934 | 12366100 | 12365934 | ID=MS.gene034446.t1.exon7;Parent=MS.gene034446.t1 |
chr2.3 | CDS | 12365934 | 12366100 | 12365934 | ID=cds.MS.gene034446.t1;Parent=MS.gene034446.t1 |
chr2.3 | exon | 12366477 | 12366573 | 12366477 | ID=MS.gene034446.t1.exon8;Parent=MS.gene034446.t1 |
chr2.3 | CDS | 12366477 | 12366573 | 12366477 | ID=cds.MS.gene034446.t1;Parent=MS.gene034446.t1 |
chr2.3 | exon | 12366729 | 12366904 | 12366729 | ID=MS.gene034446.t1.exon9;Parent=MS.gene034446.t1 |
chr2.3 | CDS | 12366729 | 12366904 | 12366729 | ID=cds.MS.gene034446.t1;Parent=MS.gene034446.t1 |
Gene Sequence |
Protein sequence |