Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene035541.t1 | XP_013467596.1 | 95.7 | 188 | 8 | 0 | 1 | 188 | 62 | 249 | 1.30E-90 | 342.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene035541.t1 | Q38847 | 34.4 | 186 | 106 | 5 | 1 | 181 | 62 | 236 | 1.0e-14 | 81.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene035541.t1 | A0A072VJL7 | 95.7 | 188 | 8 | 0 | 1 | 188 | 62 | 249 | 9.4e-91 | 342.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene71222 | MS.gene035541 | PPI |
MS.gene61028 | MS.gene035541 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene035541.t1 | MTR_1g053070 | 95.745 | 188 | 8 | 0 | 1 | 188 | 62 | 249 | 1.55e-130 | 366 |
MS.gene035541.t1 | MTR_0003s0590 | 43.407 | 182 | 90 | 6 | 1 | 171 | 62 | 241 | 7.98e-26 | 100 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene035541.t1 | AT3G57390 | 42.282 | 149 | 82 | 3 | 43 | 187 | 46 | 194 | 1.91e-21 | 87.0 |
MS.gene035541.t1 | AT3G57390 | 36.923 | 195 | 114 | 5 | 1 | 187 | 62 | 255 | 8.79e-21 | 86.7 |
MS.gene035541.t1 | AT5G13790 | 34.409 | 186 | 106 | 5 | 1 | 181 | 62 | 236 | 1.57e-20 | 86.3 |
MS.gene035541.t1 | AT5G13790 | 34.946 | 186 | 108 | 5 | 1 | 181 | 62 | 239 | 2.49e-20 | 85.9 |
MS.gene035541.t1 | AT3G57390 | 36.975 | 119 | 70 | 2 | 1 | 115 | 62 | 179 | 3.42e-14 | 68.6 |
Find 45 sgRNAs with CRISPR-Local
Find 270 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTAGGTACTGCAGTTCTTTA+AGG | 0.177213 | 1.4:-39106040 | None:intergenic |
CGAGGCCTTGGTTTGAATAA+TGG | 0.284334 | 1.4:+39105212 | MS.gene035541:CDS |
TCCTTTCAATTATGCTTTAG+AGG | 0.301407 | 1.4:+39108470 | MS.gene035541:CDS |
ATTCATTGAATTTCATTCAT+TGG | 0.313661 | 1.4:+39108416 | MS.gene035541:CDS |
CTTCACGGAGTTGATGTTCT+AGG | 0.314940 | 1.4:-39106058 | None:intergenic |
TCAGATACTTCCTTGCAGTT+AGG | 0.341704 | 1.4:+39108504 | MS.gene035541:CDS |
ACTTAAGAGATCCAGGTTAC+AGG | 0.376681 | 1.4:+39107664 | MS.gene035541:CDS |
CAGATACTTCCTTGCAGTTA+GGG | 0.407971 | 1.4:+39108505 | MS.gene035541:CDS |
TTTGAATAATGGAGCAGAAC+AGG | 0.414475 | 1.4:+39105223 | MS.gene035541:CDS |
AGGTACGGTAACCGAGGCCT+TGG | 0.428686 | 1.4:+39105200 | MS.gene035541:CDS |
CTGTGGTAGAGGCTGATCAC+TGG | 0.430009 | 1.4:-39105252 | None:intergenic |
TTGAATTTCATTCATTGGAT+AGG | 0.441425 | 1.4:+39108421 | MS.gene035541:CDS |
TTATGATATGCAGGAGCAAA+AGG | 0.449428 | 1.4:+39108217 | MS.gene035541:intron |
CTGAACAACTTAAGAGATCC+AGG | 0.452542 | 1.4:+39107657 | MS.gene035541:CDS |
CGGTAAGGAGCTTGATGGAT+TGG | 0.460269 | 1.4:+39106016 | MS.gene035541:CDS |
GGTAAGGAGCTTGATGGATT+GGG | 0.465138 | 1.4:+39106017 | MS.gene035541:CDS |
GCAGGAGCAAAAGGCTATGA+TGG | 0.488381 | 1.4:+39108226 | MS.gene035541:intron |
TGACAGCTGATATCCCTTCA+CGG | 0.491805 | 1.4:-39106073 | None:intergenic |
TCGGTTACCGTACCTTGAAA+TGG | 0.494921 | 1.4:-39105192 | None:intergenic |
ATGAGCGGTAAGGAGCTTGA+TGG | 0.495202 | 1.4:+39106011 | MS.gene035541:CDS |
CATTATTCAAACCAAGGCCT+CGG | 0.498263 | 1.4:-39105211 | None:intergenic |
TGTTATTTCTTCCTGCAGAA+TGG | 0.505153 | 1.4:-39105749 | None:intergenic |
TGACTCCCCGAGTTGTTGCT+AGG | 0.513833 | 1.4:-39109120 | None:intergenic |
GCATGGAGCACACCATTTCA+AGG | 0.520028 | 1.4:+39105180 | None:intergenic |
CCTTTCAATTATGCTTTAGA+GGG | 0.525663 | 1.4:+39108471 | MS.gene035541:CDS |
AAAATACGTACCTGTGGTAG+AGG | 0.539197 | 1.4:-39105263 | None:intergenic |
TGTGGTAGAGGCTGATCACT+GGG | 0.539369 | 1.4:-39105251 | None:intergenic |
GCTTGATACTACCATTCTGC+AGG | 0.545429 | 1.4:+39105738 | MS.gene035541:CDS |
CCCTCTAAAGCATAATTGAA+AGG | 0.553526 | 1.4:-39108471 | None:intergenic |
GATAGAACCTAGCAACAACT+CGG | 0.564795 | 1.4:+39109113 | MS.gene035541:CDS |
TAGAACATCAACTCCGTGAA+GGG | 0.574021 | 1.4:+39106060 | MS.gene035541:CDS |
GATGTCATGTACCTGTAACC+TGG | 0.578910 | 1.4:-39107675 | None:intergenic |
CATCAGATTATGATCACAAG+AGG | 0.588024 | 1.4:+39109079 | MS.gene035541:CDS |
GTGCAGAAGAATGAGCGGTA+AGG | 0.590013 | 1.4:+39106001 | MS.gene035541:intron |
ATAGAACCTAGCAACAACTC+GGG | 0.590238 | 1.4:+39109114 | MS.gene035541:CDS |
GATAGGACAATTTCAGTCAA+CGG | 0.593398 | 1.4:+39108438 | MS.gene035541:CDS |
CAGTGATCAGCCTCTACCAC+AGG | 0.608508 | 1.4:+39105253 | MS.gene035541:CDS |
TCTAAAGCATAATTGAAAGG+AGG | 0.611002 | 1.4:-39108468 | None:intergenic |
CTGCTCCATTATTCAAACCA+AGG | 0.616233 | 1.4:-39105217 | None:intergenic |
CTAGAACATCAACTCCGTGA+AGG | 0.619213 | 1.4:+39106059 | MS.gene035541:CDS |
GAGCACACCATTTCAAGGTA+CGG | 0.632860 | 1.4:+39105185 | MS.gene035541:CDS |
TAGAACCTAGCAACAACTCG+GGG | 0.669340 | 1.4:+39109115 | MS.gene035541:CDS |
GTATACATACCCTAACTGCA+AGG | 0.678306 | 1.4:-39108514 | None:intergenic |
AAATTGTGCAGAAGAATGAG+CGG | 0.689002 | 1.4:+39105996 | MS.gene035541:intron |
ATTTCAAGGTACGGTAACCG+AGG | 0.714416 | 1.4:+39105194 | MS.gene035541:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | CTAAATTATAAATAAAATGA+TGG | + | chr1.4:39106227-39106246 | MS.gene035541:intron | 10.0% |
!!! | AAAATGAAAATGATTTTAAT+TGG | + | chr1.4:39108655-39108674 | MS.gene035541:intron | 10.0% |
!!! | AAAATTATTCAAATTACTTT+TGG | - | chr1.4:39108050-39108069 | None:intergenic | 10.0% |
!!! | AACAACAATTTTTTTTTTAA+AGG | - | chr1.4:39108171-39108190 | None:intergenic | 10.0% |
!!! | GTAAATATTTTCAATAATTT+TGG | - | chr1.4:39108993-39109012 | None:intergenic | 10.0% |
!! | AAACTAGTATTAATGTATTA+AGG | + | chr1.4:39105917-39105936 | MS.gene035541:intron | 15.0% |
!! | TATATCTTCAAGTATATAAT+TGG | - | chr1.4:39108711-39108730 | None:intergenic | 15.0% |
!!! | AAAACATTTTTTTTAGCAAT+TGG | - | chr1.4:39108968-39108987 | None:intergenic | 15.0% |
!! | AAAAGTAGTACAAAAAACTA+CGG | - | chr1.4:39107239-39107258 | None:intergenic | 20.0% |
!! | AATAAAAACATGAGTGAAAA+GGG | - | chr1.4:39108547-39108566 | None:intergenic | 20.0% |
!! | ACACTTTATGTCATTAAATA+AGG | + | chr1.4:39105805-39105824 | MS.gene035541:intron | 20.0% |
!! | ATAAGATGTTAAATGAGTTT+AGG | - | chr1.4:39105509-39105528 | None:intergenic | 20.0% |
!! | ATTCATTGAATTTCATTCAT+TGG | + | chr1.4:39108416-39108435 | MS.gene035541:CDS | 20.0% |
!! | TAATTCCAAAAACTTTCTAT+GGG | - | chr1.4:39107767-39107786 | None:intergenic | 20.0% |
!! | TATATAATTTAAACAGCTTG+AGG | + | chr1.4:39108368-39108387 | MS.gene035541:intron | 20.0% |
!! | TATTTAATGACATAAAGTGT+CGG | - | chr1.4:39105805-39105824 | None:intergenic | 20.0% |
!! | TATTTGTCAAAAAAAAAGTC+TGG | - | chr1.4:39108782-39108801 | None:intergenic | 20.0% |
!! | TTAATGTATTAAGGAACTAA+TGG | + | chr1.4:39105926-39105945 | MS.gene035541:intron | 20.0% |
!! | TTAATTCCAAAAACTTTCTA+TGG | - | chr1.4:39107768-39107787 | None:intergenic | 20.0% |
!! | TTATAACACAGATTTAACAT+AGG | - | chr1.4:39107797-39107816 | None:intergenic | 20.0% |
!! | TTTGAAGATTAAATTGACTA+TGG | - | chr1.4:39108735-39108754 | None:intergenic | 20.0% |
!!! | ATTAATACTAGTTTTTGTCT+AGG | - | chr1.4:39105911-39105930 | None:intergenic | 20.0% |
!!! | ATTGGAACATTTAAATTTTG+TGG | + | chr1.4:39108673-39108692 | MS.gene035541:intron | 20.0% |
!!! | GTTAATTTTGTTATTGTTGT+AGG | + | chr1.4:39109052-39109071 | MS.gene035541:intron | 20.0% |
!!! | TTCAAAATTTTATGATATGC+AGG | + | chr1.4:39108208-39108227 | MS.gene035541:intron | 20.0% |
!!! | TTTTTCCTTTCTTTTCTATT+GGG | + | chr1.4:39107198-39107217 | MS.gene035541:intron | 20.0% |
!!! | TTTTTTCCTTTCTTTTCTAT+TGG | + | chr1.4:39107197-39107216 | MS.gene035541:intron | 20.0% |
! | AAAGTAGTACAAAAAACTAC+GGG | - | chr1.4:39107238-39107257 | None:intergenic | 25.0% |
! | AACAATGCATTGTTATATGA+AGG | + | chr1.4:39107859-39107878 | MS.gene035541:intron | 25.0% |
! | AACAATTAGGTACATTACTA+TGG | - | chr1.4:39107422-39107441 | None:intergenic | 25.0% |
! | AATGAGTTTAGGAAAATTTG+AGG | - | chr1.4:39105498-39105517 | None:intergenic | 25.0% |
! | ACAATGCATTGTTATATGAA+GGG | + | chr1.4:39107860-39107879 | MS.gene035541:intron | 25.0% |
! | ACAGAAACAAAATTCTTAGA+AGG | - | chr1.4:39105663-39105682 | None:intergenic | 25.0% |
! | ACATTTCTATTCCAACTAAT+AGG | - | chr1.4:39106277-39106296 | None:intergenic | 25.0% |
! | AGACAATGTCAAATACAATA+TGG | - | chr1.4:39105597-39105616 | None:intergenic | 25.0% |
! | ATAGTAATGTACCTAATTGT+TGG | + | chr1.4:39107421-39107440 | MS.gene035541:intron | 25.0% |
! | ATATATCTTAGTGCTCTTTA+AGG | - | chr1.4:39108943-39108962 | None:intergenic | 25.0% |
! | ATCACAATCAAACAATCTTA+AGG | - | chr1.4:39108862-39108881 | None:intergenic | 25.0% |
! | ATGATTAAGATTTAGATGCA+GGG | + | chr1.4:39106150-39106169 | MS.gene035541:intron | 25.0% |
! | ATGTGATAGGAACATATAAA+TGG | - | chr1.4:39105539-39105558 | None:intergenic | 25.0% |
! | CAATAAAAACATGAGTGAAA+AGG | - | chr1.4:39108548-39108567 | None:intergenic | 25.0% |
! | CTCCACTTATTAATCTTAAA+AGG | + | chr1.4:39107905-39107924 | MS.gene035541:intron | 25.0% |
! | TACAAAATACATGCAAATGT+TGG | - | chr1.4:39105843-39105862 | None:intergenic | 25.0% |
! | TATGATTAAGATTTAGATGC+AGG | + | chr1.4:39106149-39106168 | MS.gene035541:intron | 25.0% |
! | TTGAATTTCATTCATTGGAT+AGG | + | chr1.4:39108421-39108440 | MS.gene035541:CDS | 25.0% |
! | TTTGACATGTACTGAAAAAT+AGG | - | chr1.4:39106254-39106273 | None:intergenic | 25.0% |
! | TTTGGAAATTGTACAGAAAT+GGG | - | chr1.4:39108615-39108634 | None:intergenic | 25.0% |
!! | GTTGTTAAAGAGTCTTATAT+CGG | + | chr1.4:39105312-39105331 | MS.gene035541:intron | 25.0% |
!! | TATTTTACCAATGCAGTTTT+TGG | + | chr1.4:39105280-39105299 | MS.gene035541:intron | 25.0% |
!! | TTTTTAATCAAGTAGTCTAC+TGG | - | chr1.4:39107941-39107960 | None:intergenic | 25.0% |
!! | TTTTTGACAAATATAGTCAC+TGG | + | chr1.4:39108789-39108808 | MS.gene035541:intron | 25.0% |
!!! | ATGCTTTTTCTTCTACAATA+TGG | + | chr1.4:39107071-39107090 | MS.gene035541:intron | 25.0% |
!!! | ATTCTTGCATATTTTTGAGT+AGG | + | chr1.4:39105708-39105727 | MS.gene035541:intron | 25.0% |
!!! | CACCTTTTAAGATTAATAAG+TGG | - | chr1.4:39107910-39107929 | None:intergenic | 25.0% |
!!! | TTAGTTCAGTTATTGTTTTG+TGG | + | chr1.4:39105962-39105981 | MS.gene035541:intron | 25.0% |
!!! | TTTTGGAAATTGTACAGAAA+TGG | - | chr1.4:39108616-39108635 | None:intergenic | 25.0% |
AAAATTGAATTCTGATCTCG+AGG | - | chr1.4:39107038-39107057 | None:intergenic | 30.0% | |
AAGTAGTACAAAAAACTACG+GGG | - | chr1.4:39107237-39107256 | None:intergenic | 30.0% | |
AATCTTAAGGACTAAACTGA+TGG | - | chr1.4:39108849-39108868 | None:intergenic | 30.0% | |
AATGTTAGTGGTTAATTCGT+TGG | + | chr1.4:39106292-39106311 | MS.gene035541:intron | 30.0% | |
AGTTGGAATAGAAATGTTAG+TGG | + | chr1.4:39106280-39106299 | MS.gene035541:intron | 30.0% | |
ATCAGCTGTCAAAAATAAGA+AGG | + | chr1.4:39106085-39106104 | MS.gene035541:CDS | 30.0% | |
ATGTTAGTGGTTAATTCGTT+GGG | + | chr1.4:39106293-39106312 | MS.gene035541:intron | 30.0% | |
CAATGCATTGTTATATGAAG+GGG | + | chr1.4:39107861-39107880 | MS.gene035541:intron | 30.0% | |
CTCAAAGTTGTTTATGAGAT+GGG | + | chr1.4:39105428-39105447 | MS.gene035541:intron | 30.0% | |
CTTATACTTGTGATATCTTG+CGG | - | chr1.4:39107725-39107744 | None:intergenic | 30.0% | |
GAAAAGAAAGGAAAAAAACC+AGG | - | chr1.4:39107194-39107213 | None:intergenic | 30.0% | |
GACAATGTGTTTATAAGTGA+GGG | + | chr1.4:39105349-39105368 | MS.gene035541:intron | 30.0% | |
GATGCACAACTAATTAAGAA+AGG | - | chr1.4:39105641-39105660 | None:intergenic | 30.0% | |
TAATACCAAAGTGATGCAAT+TGG | + | chr1.4:39106118-39106137 | MS.gene035541:intron | 30.0% | |
TACATGTCAAACCTATTAGT+TGG | + | chr1.4:39106263-39106282 | MS.gene035541:intron | 30.0% | |
TCACTTATAAACACATTGTC+AGG | - | chr1.4:39105349-39105368 | None:intergenic | 30.0% | |
TCCTTTCAATTATGCTTTAG+AGG | + | chr1.4:39108470-39108489 | MS.gene035541:CDS | 30.0% | |
TCTCAAAGTTGTTTATGAGA+TGG | + | chr1.4:39105427-39105446 | MS.gene035541:intron | 30.0% | |
TGACAATGTGTTTATAAGTG+AGG | + | chr1.4:39105348-39105367 | MS.gene035541:intron | 30.0% | |
TGACACAGATGTCTTAAATT+AGG | - | chr1.4:39107526-39107545 | None:intergenic | 30.0% | |
TGTACTTTATATCACCCATT+TGG | + | chr1.4:39107168-39107187 | MS.gene035541:intron | 30.0% | |
TTCAAGTATATAATTGGCCA+TGG | - | chr1.4:39108705-39108724 | None:intergenic | 30.0% | |
TTTATAATGCATGAATCTGC+TGG | + | chr1.4:39107580-39107599 | MS.gene035541:intron | 30.0% | |
! | AAGTTAAAACGTGAAAGCAT+AGG | - | chr1.4:39108574-39108593 | None:intergenic | 30.0% |
! | ATTAATAAGTGGAGTGTTTG+AGG | - | chr1.4:39107899-39107918 | None:intergenic | 30.0% |
! | CCTTTCAATTATGCTTTAGA+GGG | + | chr1.4:39108471-39108490 | MS.gene035541:CDS | 30.0% |
! | TAAACAACTTTGAGAAATCG+TGG | - | chr1.4:39105422-39105441 | None:intergenic | 30.0% |
! | TAAAGCCCATAGAAAGTTTT+TGG | + | chr1.4:39107759-39107778 | MS.gene035541:intron | 30.0% |
! | TACAACTTTAAGTGCACTTT+TGG | - | chr1.4:39108633-39108652 | None:intergenic | 30.0% |
! | TCACTGGAATTTAAAATCCT+TGG | + | chr1.4:39108805-39108824 | MS.gene035541:intron | 30.0% |
! | TCTAAAGCATAATTGAAAGG+AGG | - | chr1.4:39108471-39108490 | None:intergenic | 30.0% |
! | TTTTACTTCGGATTGTGATT+TGG | + | chr1.4:39107143-39107162 | MS.gene035541:intron | 30.0% |
!! | AGTTTTGTGATCAATGTGAT+AGG | - | chr1.4:39105568-39105587 | None:intergenic | 30.0% |
!! | ATTCAAATTACTTTTGGCCT+TGG | - | chr1.4:39108044-39108063 | None:intergenic | 30.0% |
!! | CTAAAAGAGTATTGAAAACG+AGG | - | chr1.4:39106356-39106375 | None:intergenic | 30.0% |
!! | TCCTCAAAAAACGGTTTTAT+GGG | + | chr1.4:39105381-39105400 | MS.gene035541:intron | 30.0% |
!! | TGATAGGTTGATTATGTGAT+AGG | - | chr1.4:39105552-39105571 | None:intergenic | 30.0% |
!! | TTTTTGTCCTTTAGTTTCCT+GGG | + | chr1.4:39106753-39106772 | MS.gene035541:intron | 30.0% |
!!! | GGTTTTAAAACCAAAGAACT+TGG | - | chr1.4:39106604-39106623 | None:intergenic | 30.0% |
!!! | TTTTTTGTCCTTTAGTTTCC+TGG | + | chr1.4:39106752-39106771 | MS.gene035541:intron | 30.0% |
AAATTGTGCAGAAGAATGAG+CGG | + | chr1.4:39105996-39106015 | MS.gene035541:intron | 35.0% | |
AAGTAAAAAGTTCACACACC+AGG | - | chr1.4:39107131-39107150 | None:intergenic | 35.0% | |
ACAATCCTCTCCTCAAAAAA+CGG | + | chr1.4:39105372-39105391 | MS.gene035541:intron | 35.0% | |
ATTGGCTACAGAGCTATAAA+TGG | + | chr1.4:39106925-39106944 | MS.gene035541:intron | 35.0% | |
ATTGGTAAAATACGTACCTG+TGG | - | chr1.4:39105272-39105291 | None:intergenic | 35.0% | |
CACACTCTAAGTAGATTGAA+AGG | - | chr1.4:39107262-39107281 | None:intergenic | 35.0% | |
CATCAGATTATGATCACAAG+AGG | + | chr1.4:39109079-39109098 | MS.gene035541:CDS | 35.0% | |
CCAAAACATATTCCTATGAG+TGG | - | chr1.4:39108008-39108027 | None:intergenic | 35.0% | |
CCAAACCCAATAGAAAAGAA+AGG | - | chr1.4:39107206-39107225 | None:intergenic | 35.0% | |
CTAATGACCAAAAACTGCAT+TGG | - | chr1.4:39105290-39105309 | None:intergenic | 35.0% | |
CTATGGTCATTTGCATTAAG+AGG | - | chr1.4:39107405-39107424 | None:intergenic | 35.0% | |
CTTTCAATCTACTTAGAGTG+TGG | + | chr1.4:39107260-39107279 | MS.gene035541:intron | 35.0% | |
GAAACAAACTCCAAACGAAA+CGG | - | chr1.4:39106886-39106905 | None:intergenic | 35.0% | |
GAACTGAATAGACCAAACAA+CGG | - | chr1.4:39106684-39106703 | None:intergenic | 35.0% | |
GATAGGACAATTTCAGTCAA+CGG | + | chr1.4:39108438-39108457 | MS.gene035541:CDS | 35.0% | |
TCTGACTTTGACCAACAATT+AGG | - | chr1.4:39107435-39107454 | None:intergenic | 35.0% | |
TGTTAGTGGTTAATTCGTTG+GGG | + | chr1.4:39106294-39106313 | MS.gene035541:intron | 35.0% | |
TTATGATATGCAGGAGCAAA+AGG | + | chr1.4:39108217-39108236 | MS.gene035541:intron | 35.0% | |
TTGAGTAAATCGATCCTTGA+GGG | - | chr1.4:39106626-39106645 | None:intergenic | 35.0% | |
! | AAATTTTGTGGTTGAGTCCA+TGG | + | chr1.4:39108685-39108704 | MS.gene035541:intron | 35.0% |
! | AACTTTGAGAAATCGTGGTT+GGG | - | chr1.4:39105417-39105436 | None:intergenic | 35.0% |
! | AGTATTGAAAACGAGGTTCA+TGG | - | chr1.4:39106349-39106368 | None:intergenic | 35.0% |
! | CCACTCATAGGAATATGTTT+TGG | + | chr1.4:39108005-39108024 | MS.gene035541:intron | 35.0% |
! | CCTTTCTTTTCTATTGGGTT+TGG | + | chr1.4:39107203-39107222 | MS.gene035541:intron | 35.0% |
! | CTCCTCAAAAAACGGTTTTA+TGG | + | chr1.4:39105380-39105399 | MS.gene035541:intron | 35.0% |
! | GAAAAAGCATGCAAACGATT+AGG | - | chr1.4:39107061-39107080 | None:intergenic | 35.0% |
! | GGTGTGTGAACTTTTTACTT+CGG | + | chr1.4:39107131-39107150 | MS.gene035541:intron | 35.0% |
! | TTGGCAATTTTGTTCTACCA+AGG | + | chr1.4:39108024-39108043 | MS.gene035541:intron | 35.0% |
! | TTTGAATAATGGAGCAGAAC+AGG | + | chr1.4:39105223-39105242 | MS.gene035541:CDS | 35.0% |
!! | AGAAAGCATAAGTACTGAAG+AGG | - | chr1.4:39108091-39108110 | None:intergenic | 35.0% |
!! | CATGAGTGAAAAGGGTATTA+TGG | - | chr1.4:39108539-39108558 | None:intergenic | 35.0% |
!! | CCCTCTAAAGCATAATTGAA+AGG | - | chr1.4:39108474-39108493 | None:intergenic | 35.0% |
!! | CCTCAAAAAACGGTTTTATG+GGG | + | chr1.4:39105382-39105401 | MS.gene035541:intron | 35.0% |
!! | GTTTTAGTCCTACATACCAT+TGG | - | chr1.4:39106181-39106200 | None:intergenic | 35.0% |
!! | TGTTATTTCTTCCTGCAGAA+TGG | - | chr1.4:39105752-39105771 | None:intergenic | 35.0% |
!! | TTAATGACATAAAGTGTCGG+TGG | - | chr1.4:39105802-39105821 | None:intergenic | 35.0% |
!!! | AAAGCTTTTTTTCTACGAGC+AGG | - | chr1.4:39107968-39107987 | None:intergenic | 35.0% |
!!! | GCATATTTTTGAGTAGGTTG+TGG | + | chr1.4:39105714-39105733 | MS.gene035541:intron | 35.0% |
!!! | TAAAACCGTTTTTTGAGGAG+AGG | - | chr1.4:39105380-39105399 | None:intergenic | 35.0% |
!!! | TTTGGTTTTAAAACCCCTCA+AGG | + | chr1.4:39106609-39106628 | MS.gene035541:intron | 35.0% |
AAAATACGTACCTGTGGTAG+AGG | - | chr1.4:39105266-39105285 | None:intergenic | 40.0% | |
AAATCCTACGAACCCAAGTA+TGG | - | chr1.4:39107104-39107123 | None:intergenic | 40.0% | |
AACTCAAAACCAAACGCAGA+TGG | - | chr1.4:39106555-39106574 | None:intergenic | 40.0% | |
AATCACACTGAATGACTGAG+AGG | - | chr1.4:39106908-39106927 | None:intergenic | 40.0% | |
AATCCTACGAACCCAAGTAT+GGG | - | chr1.4:39107103-39107122 | None:intergenic | 40.0% | |
ACAGAGCTATAAATGGCATG+TGG | + | chr1.4:39106932-39106951 | MS.gene035541:intron | 40.0% | |
ACTTAAGAGATCCAGGTTAC+AGG | + | chr1.4:39107664-39107683 | MS.gene035541:CDS | 40.0% | |
AGAGGAAATTGTTAGCAGCA+AGG | + | chr1.4:39106318-39106337 | MS.gene035541:intron | 40.0% | |
AGGAAAAAAACCAGGCCAAA+TGG | - | chr1.4:39107186-39107205 | None:intergenic | 40.0% | |
ATAGAACCTAGCAACAACTC+GGG | + | chr1.4:39109114-39109133 | MS.gene035541:CDS | 40.0% | |
CAATGCATTGTTCTAGCCAT+CGG | - | chr1.4:39107851-39107870 | None:intergenic | 40.0% | |
CACAACCAATTGCATCACTT+TGG | - | chr1.4:39106126-39106145 | None:intergenic | 40.0% | |
CAGATACTTCCTTGCAGTTA+GGG | + | chr1.4:39108505-39108524 | MS.gene035541:CDS | 40.0% | |
CATTATTCAAACCAAGGCCT+CGG | - | chr1.4:39105214-39105233 | None:intergenic | 40.0% | |
CTATATCTGTTGAGAACTGC+AGG | + | chr1.4:39106781-39106800 | MS.gene035541:intron | 40.0% | |
CTATGAGTGGACAATGTGTA+CGG | - | chr1.4:39107995-39108014 | None:intergenic | 40.0% | |
CTGAACAACTTAAGAGATCC+AGG | + | chr1.4:39107657-39107676 | MS.gene035541:CDS | 40.0% | |
CTGCTCCATTATTCAAACCA+AGG | - | chr1.4:39105220-39105239 | None:intergenic | 40.0% | |
CTTGAGTAAATCGATCCTTG+AGG | - | chr1.4:39106627-39106646 | None:intergenic | 40.0% | |
CTTTATCCCTGTTTAAGCCA+GGG | - | chr1.4:39106381-39106400 | None:intergenic | 40.0% | |
GATAGAACCTAGCAACAACT+CGG | + | chr1.4:39109113-39109132 | MS.gene035541:CDS | 40.0% | |
GCATTCCAAAAACTTGAGTG+TGG | - | chr1.4:39106832-39106851 | None:intergenic | 40.0% | |
GGAAAAAAACCAGGCCAAAT+GGG | - | chr1.4:39107185-39107204 | None:intergenic | 40.0% | |
GTATACATACCCTAACTGCA+AGG | - | chr1.4:39108517-39108536 | None:intergenic | 40.0% | |
TAGAACATCAACTCCGTGAA+GGG | + | chr1.4:39106060-39106079 | MS.gene035541:CDS | 40.0% | |
TCAGATACTTCCTTGCAGTT+AGG | + | chr1.4:39108504-39108523 | MS.gene035541:CDS | 40.0% | |
TCGATTTACTCAAGATCCGA+TGG | + | chr1.4:39106633-39106652 | MS.gene035541:intron | 40.0% | |
TCTCAGTCATTCAGTGTGAT+TGG | + | chr1.4:39106907-39106926 | MS.gene035541:intron | 40.0% | |
TGAGTAAATCGATCCTTGAG+GGG | - | chr1.4:39106625-39106644 | None:intergenic | 40.0% | |
TTAACCTTATGCACTCACAC+TGG | + | chr1.4:39107605-39107624 | MS.gene035541:intron | 40.0% | |
TTGAATTCTGATCTCGAGGA+AGG | - | chr1.4:39107034-39107053 | None:intergenic | 40.0% | |
TTTATATCACCCATTTGGCC+TGG | + | chr1.4:39107173-39107192 | MS.gene035541:intron | 40.0% | |
! | AGGGATAAAGCCTCTTTTAG+CGG | + | chr1.4:39106391-39106410 | MS.gene035541:intron | 40.0% |
! | AGTGTTTGAGGTTCGAACTT+CGG | - | chr1.4:39107887-39107906 | None:intergenic | 40.0% |
! | CAACTTTGAGAAATCGTGGT+TGG | - | chr1.4:39105418-39105437 | None:intergenic | 40.0% |
! | CACTGGCTATATTATGTTGC+AGG | + | chr1.4:39107622-39107641 | MS.gene035541:intron | 40.0% |
! | CTAGGTACTGCAGTTCTTTA+AGG | - | chr1.4:39106043-39106062 | None:intergenic | 40.0% |
! | GATGGAATCAACAAGAGTAC+TGG | - | chr1.4:39108831-39108850 | None:intergenic | 40.0% |
! | GCATGTATTTTGTAAGCTGC+AGG | + | chr1.4:39105849-39105868 | MS.gene035541:intron | 40.0% |
! | GTCTACCACACTCAAGTTTT+TGG | + | chr1.4:39106824-39106843 | MS.gene035541:intron | 40.0% |
!!! | ATCTGCGTTTGGTTTTGAGT+TGG | + | chr1.4:39106554-39106573 | MS.gene035541:intron | 40.0% |
!!! | CATGTTTTTTGAGACCGAAC+CGG | - | chr1.4:39106856-39106875 | None:intergenic | 40.0% |
!!! | CCCCATAAAACCGTTTTTTG+AGG | - | chr1.4:39105385-39105404 | None:intergenic | 40.0% |
!!! | CTCAAGTTTTTGGAATGCTC+CGG | + | chr1.4:39106834-39106853 | MS.gene035541:intron | 40.0% |
!!! | TCAATACTCTTTTAGCTCCC+TGG | + | chr1.4:39106361-39106380 | MS.gene035541:intron | 40.0% |
AGACCAACCCAGGAAACTAA+AGG | - | chr1.4:39106763-39106782 | None:intergenic | 45.0% | |
AGCCATCGGAACTATGTTCA+GGG | - | chr1.4:39107837-39107856 | None:intergenic | 45.0% | |
ATAGCCAGTGTGAGTGCATA+AGG | - | chr1.4:39107612-39107631 | None:intergenic | 45.0% | |
ATATGGTTCGAGCCCATACT+TGG | + | chr1.4:39107088-39107107 | MS.gene035541:intron | 45.0% | |
ATGCAAGAGTCCGTTTCGTT+TGG | + | chr1.4:39106873-39106892 | MS.gene035541:intron | 45.0% | |
ATTTCAAGGTACGGTAACCG+AGG | + | chr1.4:39105194-39105213 | MS.gene035541:CDS | 45.0% | |
CAAAGGAAGACCGCTAAAAG+AGG | - | chr1.4:39106404-39106423 | None:intergenic | 45.0% | |
CAACAGATATAGACCAACCC+AGG | - | chr1.4:39106773-39106792 | None:intergenic | 45.0% | |
CAGACACTCTCTTGTACCAT+CGG | - | chr1.4:39106652-39106671 | None:intergenic | 45.0% | |
CGTACACATTGTCCACTCAT+AGG | + | chr1.4:39107993-39108012 | MS.gene035541:intron | 45.0% | |
CTAGAACATCAACTCCGTGA+AGG | + | chr1.4:39106059-39106078 | MS.gene035541:CDS | 45.0% | |
CTGTGAATGACACCGTTGTT+TGG | + | chr1.4:39106669-39106688 | MS.gene035541:intron | 45.0% | |
GAGCACACCATTTCAAGGTA+CGG | + | chr1.4:39105185-39105204 | MS.gene035541:CDS | 45.0% | |
GAGCTATAAATGGCATGTGG+AGG | + | chr1.4:39106935-39106954 | MS.gene035541:intron | 45.0% | |
GATGTCATGTACCTGTAACC+TGG | - | chr1.4:39107678-39107697 | None:intergenic | 45.0% | |
GCTTGATACTACCATTCTGC+AGG | + | chr1.4:39105738-39105757 | MS.gene035541:CDS | 45.0% | |
GCTTTATCCCTGTTTAAGCC+AGG | - | chr1.4:39106382-39106401 | None:intergenic | 45.0% | |
GTTCAGGGAGACTCTAAATC+AGG | - | chr1.4:39107822-39107841 | None:intergenic | 45.0% | |
TAGAACCTAGCAACAACTCG+GGG | + | chr1.4:39109115-39109134 | MS.gene035541:CDS | 45.0% | |
TAGCCATCGGAACTATGTTC+AGG | - | chr1.4:39107838-39107857 | None:intergenic | 45.0% | |
TATGGTTCGAGCCCATACTT+GGG | + | chr1.4:39107089-39107108 | MS.gene035541:intron | 45.0% | |
TCGGTTACCGTACCTTGAAA+TGG | - | chr1.4:39105195-39105214 | None:intergenic | 45.0% | |
TGACAGCTGATATCCCTTCA+CGG | - | chr1.4:39106076-39106095 | None:intergenic | 45.0% | |
TGGTTAATTCGTTGGGGAAG+AGG | + | chr1.4:39106300-39106319 | MS.gene035541:intron | 45.0% | |
TTAGCTCCCTGGCTTAAACA+GGG | + | chr1.4:39106372-39106391 | MS.gene035541:intron | 45.0% | |
! | CGAGGCCTTGGTTTGAATAA+TGG | + | chr1.4:39105212-39105231 | MS.gene035541:CDS | 45.0% |
! | GGTTCGTAGGATTTTGTACC+TGG | + | chr1.4:39107110-39107129 | MS.gene035541:intron | 45.0% |
! | TGTCCTTTAGTTTCCTGGGT+TGG | + | chr1.4:39106757-39106776 | MS.gene035541:intron | 45.0% |
! | TTTAGCTCCCTGGCTTAAAC+AGG | + | chr1.4:39106371-39106390 | MS.gene035541:intron | 45.0% |
!! | ATCAACAAGAGTACTGGCCA+AGG | - | chr1.4:39108825-39108844 | None:intergenic | 45.0% |
!! | CTTCACGGAGTTGATGTTCT+AGG | - | chr1.4:39106061-39106080 | None:intergenic | 45.0% |
!! | GGTAAGGAGCTTGATGGATT+GGG | + | chr1.4:39106017-39106036 | MS.gene035541:CDS | 45.0% |
!!! | GTTTTTGGAATGCTCCGGTT+CGG | + | chr1.4:39106839-39106858 | MS.gene035541:intron | 45.0% |
!!! | TGGTTTTGAGTTGGAGCAGT+CGG | + | chr1.4:39106563-39106582 | MS.gene035541:intron | 45.0% |
!! | AGAAAAAATTTATTTAATTA+AGG | + | chr1.4:39109027-39109046 | MS.gene035541:intron | 5.0% |
!! | ATTTATAATTTAGTTATAAA+AGG | - | chr1.4:39106220-39106239 | None:intergenic | 5.0% |
!! | TAAATTATAAATAAAATGAT+GGG | + | chr1.4:39106228-39106247 | MS.gene035541:intron | 5.0% |
!!! | TAAATATTTTCAATAATTTT+GGG | - | chr1.4:39108992-39109011 | None:intergenic | 5.0% |
ATGAGCGGTAAGGAGCTTGA+TGG | + | chr1.4:39106011-39106030 | MS.gene035541:CDS | 50.0% | |
CAATCCACCAAGTAAGACGC+TGG | - | chr1.4:39106724-39106743 | None:intergenic | 50.0% | |
CTCCCTGAACATAGTTCCGA+TGG | + | chr1.4:39107832-39107851 | MS.gene035541:intron | 50.0% | |
GCAGGAGCAAAAGGCTATGA+TGG | + | chr1.4:39108226-39108245 | MS.gene035541:intron | 50.0% | |
GGGCAGATCCAATGGTATGT+AGG | + | chr1.4:39106170-39106189 | MS.gene035541:intron | 50.0% | |
GTGCAGAAGAATGAGCGGTA+AGG | + | chr1.4:39106001-39106020 | MS.gene035541:intron | 50.0% | |
GTTTGAGCACCATCTGCGTT+TGG | + | chr1.4:39106543-39106562 | MS.gene035541:intron | 50.0% | |
TAGATGCAGGGCAGATCCAA+TGG | + | chr1.4:39106162-39106181 | MS.gene035541:intron | 50.0% | |
TGTCTAAACGCCAGAACTGC+CGG | + | chr1.4:39106454-39106473 | MS.gene035541:intron | 50.0% | |
TGTGGTAGAGGCTGATCACT+GGG | - | chr1.4:39105254-39105273 | None:intergenic | 50.0% | |
! | CGGTAAGGAGCTTGATGGAT+TGG | + | chr1.4:39106016-39106035 | MS.gene035541:CDS | 50.0% |
! | GGGTTTGGTATCTGTGTTGG+CGG | + | chr1.4:39106996-39107015 | MS.gene035541:intron | 50.0% |
! | GTGGGGTTTGGTATCTGTGT+TGG | + | chr1.4:39106993-39107012 | MS.gene035541:intron | 50.0% |
! | TTTCTGGTGGTCTTGAGCGT+CGG | + | chr1.4:39106499-39106518 | MS.gene035541:intron | 50.0% |
!! | GCGTCGGTTTCTTAACGTGT+TGG | + | chr1.4:39106515-39106534 | MS.gene035541:intron | 50.0% |
AAGGGTGGTGCAGAGGACAA+AGG | - | chr1.4:39106421-39106440 | None:intergenic | 55.0% | |
AGTTGGAGCAGTCGGAGACT+CGG | + | chr1.4:39106571-39106590 | MS.gene035541:intron | 55.0% | |
CACCAGAAAGGACAGCCACA+AGG | - | chr1.4:39106488-39106507 | None:intergenic | 55.0% | |
CAGTGATCAGCCTCTACCAC+AGG | + | chr1.4:39105253-39105272 | MS.gene035541:CDS | 55.0% | |
CGCAATGAGCTGTAGGTGTG+GGG | + | chr1.4:39106976-39106995 | MS.gene035541:intron | 55.0% | |
CTGTGGTAGAGGCTGATCAC+TGG | - | chr1.4:39105255-39105274 | None:intergenic | 55.0% | |
CTTGTGGCTGTCCTTTCTGG+TGG | + | chr1.4:39106486-39106505 | MS.gene035541:intron | 55.0% | |
GACGCTCAAGACCACCAGAA+AGG | - | chr1.4:39106500-39106519 | None:intergenic | 55.0% | |
GAGCCCATACTTGGGTTCGT+AGG | + | chr1.4:39107097-39107116 | MS.gene035541:intron | 55.0% | |
GCGCAATGAGCTGTAGGTGT+GGG | + | chr1.4:39106975-39106994 | MS.gene035541:intron | 55.0% | |
GTTGCTGCGCAATGAGCTGT+AGG | + | chr1.4:39106969-39106988 | MS.gene035541:intron | 55.0% | |
TCCACCAAGTAAGACGCTGG+CGG | - | chr1.4:39106721-39106740 | None:intergenic | 55.0% | |
TGACTCCCCGAGTTGTTGCT+AGG | - | chr1.4:39109123-39109142 | None:intergenic | 55.0% | |
TGAGCTGTAGGTGTGGGGTT+TGG | + | chr1.4:39106981-39107000 | MS.gene035541:intron | 55.0% | |
TGCCTTGTGGCTGTCCTTTC+TGG | + | chr1.4:39106483-39106502 | MS.gene035541:intron | 55.0% | |
TGCGCAATGAGCTGTAGGTG+TGG | + | chr1.4:39106974-39106993 | MS.gene035541:intron | 55.0% | |
! | GCTGGCGGAAGCACATTGAA+GGG | - | chr1.4:39106706-39106725 | None:intergenic | 55.0% |
!! | AGACACCCCAGCGGGTTAAA+GGG | - | chr1.4:39106439-39106458 | None:intergenic | 55.0% |
!! | CGGAGGTGCTCCAAGTTCTT+TGG | + | chr1.4:39106591-39106610 | MS.gene035541:intron | 55.0% |
!! | TAGACACCCCAGCGGGTTAA+AGG | - | chr1.4:39106440-39106459 | None:intergenic | 55.0% |
AGGTACGGTAACCGAGGCCT+TGG | + | chr1.4:39105200-39105219 | MS.gene035541:CDS | 60.0% | |
CACCACCCTTTAACCCGCTG+GGG | + | chr1.4:39106431-39106450 | MS.gene035541:intron | 60.0% | |
CGGGTTAAAGGGTGGTGCAG+AGG | - | chr1.4:39106428-39106447 | None:intergenic | 60.0% | |
CTAAACGCCAGAACTGCCGG+TGG | + | chr1.4:39106457-39106476 | MS.gene035541:intron | 60.0% | |
CTGGCGTTTAGACACCCCAG+CGG | - | chr1.4:39106448-39106467 | None:intergenic | 60.0% | |
GCACCACCCTTTAACCCGCT+GGG | + | chr1.4:39106430-39106449 | MS.gene035541:intron | 60.0% | |
GCTTCCGCCAGCGTCTTACT+TGG | + | chr1.4:39106714-39106733 | MS.gene035541:intron | 60.0% | |
TCCGCCAGCGTCTTACTTGG+TGG | + | chr1.4:39106717-39106736 | MS.gene035541:intron | 60.0% | |
TGCACCACCCTTTAACCCGC+TGG | + | chr1.4:39106429-39106448 | MS.gene035541:intron | 60.0% | |
TGGCGTTTAGACACCCCAGC+GGG | - | chr1.4:39106447-39106466 | None:intergenic | 60.0% | |
! | CGCTGGCGGAAGCACATTGA+AGG | - | chr1.4:39106707-39106726 | None:intergenic | 60.0% |
CAGCCACAAGGCAGAGCCAC+CGG | - | chr1.4:39106476-39106495 | None:intergenic | 65.0% | |
TGGAGCAGTCGGAGACTCGG+AGG | + | chr1.4:39106574-39106593 | MS.gene035541:intron | 65.0% | |
!! | CACCCCAGCGGGTTAAAGGG+TGG | - | chr1.4:39106436-39106455 | None:intergenic | 65.0% |
GGCAGAGCCACCGGCAGTTC+TGG | - | chr1.4:39106467-39106486 | None:intergenic | 70.0% | |
! | CTGCCGGTGGCTCTGCCTTG+TGG | + | chr1.4:39106470-39106489 | MS.gene035541:intron | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.4 | gene | 39105182 | 39109158 | 39105182 | ID=MS.gene035541 |
chr1.4 | mRNA | 39105182 | 39109158 | 39105182 | ID=MS.gene035541.t1;Parent=MS.gene035541 |
chr1.4 | exon | 39105182 | 39105274 | 39105182 | ID=MS.gene035541.t1.exon1;Parent=MS.gene035541.t1 |
chr1.4 | CDS | 39105182 | 39105274 | 39105182 | ID=cds.MS.gene035541.t1;Parent=MS.gene035541.t1 |
chr1.4 | exon | 39105730 | 39105791 | 39105730 | ID=MS.gene035541.t1.exon2;Parent=MS.gene035541.t1 |
chr1.4 | CDS | 39105730 | 39105791 | 39105730 | ID=cds.MS.gene035541.t1;Parent=MS.gene035541.t1 |
chr1.4 | exon | 39106007 | 39106106 | 39106007 | ID=MS.gene035541.t1.exon3;Parent=MS.gene035541.t1 |
chr1.4 | CDS | 39106007 | 39106106 | 39106007 | ID=cds.MS.gene035541.t1;Parent=MS.gene035541.t1 |
chr1.4 | exon | 39107644 | 39107685 | 39107644 | ID=MS.gene035541.t1.exon4;Parent=MS.gene035541.t1 |
chr1.4 | CDS | 39107644 | 39107685 | 39107644 | ID=cds.MS.gene035541.t1;Parent=MS.gene035541.t1 |
chr1.4 | exon | 39108230 | 39108271 | 39108230 | ID=MS.gene035541.t1.exon5;Parent=MS.gene035541.t1 |
chr1.4 | CDS | 39108230 | 39108271 | 39108230 | ID=cds.MS.gene035541.t1;Parent=MS.gene035541.t1 |
chr1.4 | exon | 39108384 | 39108526 | 39108384 | ID=MS.gene035541.t1.exon6;Parent=MS.gene035541.t1 |
chr1.4 | CDS | 39108384 | 39108526 | 39108384 | ID=cds.MS.gene035541.t1;Parent=MS.gene035541.t1 |
chr1.4 | exon | 39109074 | 39109158 | 39109074 | ID=MS.gene035541.t1.exon7;Parent=MS.gene035541.t1 |
chr1.4 | CDS | 39109074 | 39109158 | 39109074 | ID=cds.MS.gene035541.t1;Parent=MS.gene035541.t1 |
Gene Sequence |
Protein sequence |