Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene035836.t1 | XP_013459848.1 | 99.1 | 215 | 2 | 0 | 1 | 215 | 6 | 220 | 2.50E-114 | 421.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene035836.t1 | O94903 | 48.0 | 225 | 105 | 7 | 2 | 215 | 9 | 232 | 1.2e-43 | 177.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene035836.t1 | A0A072UVQ6 | 99.1 | 215 | 2 | 0 | 1 | 215 | 6 | 220 | 1.8e-114 | 421.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene002999 | MS.gene035836 | PPI |
| MS.gene00778 | MS.gene035836 | PPI |
| MS.gene02348 | MS.gene035836 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene035836.t1 | MTR_3g053230 | 99.070 | 215 | 2 | 0 | 1 | 215 | 6 | 220 | 4.25e-161 | 444 |
| MS.gene035836.t1 | MTR_2g024060 | 64.019 | 214 | 77 | 0 | 2 | 215 | 5 | 218 | 4.41e-106 | 305 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene035836.t1 | AT4G26860 | 76.056 | 213 | 51 | 0 | 3 | 215 | 7 | 219 | 2.80e-123 | 349 |
| MS.gene035836.t1 | AT4G26860 | 72.646 | 223 | 51 | 1 | 3 | 215 | 7 | 229 | 5.25e-120 | 341 |
| MS.gene035836.t1 | AT1G11930 | 71.889 | 217 | 59 | 1 | 1 | 215 | 16 | 232 | 4.91e-115 | 328 |
| MS.gene035836.t1 | AT1G11930 | 71.889 | 217 | 59 | 1 | 1 | 215 | 16 | 232 | 6.00e-115 | 328 |
Find 68 sgRNAs with CRISPR-Local
Find 232 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATAGAAATGGGTTTGGTTT+TGG | 0.202191 | 3.4:+50071934 | None:intergenic |
| CCCTCAACCATGGCCAAATT+TGG | 0.203865 | 3.4:+50070359 | None:intergenic |
| TGTAGGCGGAGTTCCAAATT+TGG | 0.251833 | 3.4:-50070372 | MS.gene035836:intron |
| GAGCTTTCTCAACGATTTCT+TGG | 0.267769 | 3.4:+50071861 | None:intergenic |
| CTCAACTCCGCAGAACTTTC+GGG | 0.271171 | 3.4:-50068804 | MS.gene035836:intron |
| GACGCAGGTCATAGAGTCTT+TGG | 0.284655 | 3.4:-50071896 | MS.gene035836:CDS |
| AAGCATACTCAGAAGTGTTT+TGG | 0.293617 | 3.4:+50070909 | None:intergenic |
| CTTCAGTCCTGCAATTTGAT+AGG | 0.293960 | 3.4:+50068590 | None:intergenic |
| CCTCAACTCCGCAGAACTTT+CGG | 0.295923 | 3.4:-50068805 | MS.gene035836:CDS |
| CGGATCTTTCCGCTGCTTGT+TGG | 0.298445 | 3.4:+50071993 | None:intergenic |
| AAGAAATCGTCTGAGGGTTT+TGG | 0.327681 | 3.4:-50070006 | MS.gene035836:CDS |
| GGAAGGATCAACACCTGATT+TGG | 0.347839 | 3.4:+50068916 | None:intergenic |
| AATATTGTTGCAGCCAAATC+AGG | 0.353422 | 3.4:-50068929 | MS.gene035836:intron |
| GATATCCAGTGGCACTTCAT+TGG | 0.369697 | 3.4:-50070952 | MS.gene035836:CDS |
| AAGCCAGAGAATTCTAAGTT+TGG | 0.370526 | 3.4:+50068854 | None:intergenic |
| TCCAAATTTGGCCATGGTTG+AGG | 0.377384 | 3.4:-50070360 | MS.gene035836:CDS |
| GATCCAAACCCGATCGAGTT+CGG | 0.378479 | 3.4:-50071970 | MS.gene035836:CDS |
| CCAAATTTGGCCATGGTTGA+GGG | 0.387342 | 3.4:-50070359 | MS.gene035836:CDS |
| GACCCGAACTCGATCGGGTT+TGG | 0.389360 | 3.4:+50071967 | None:intergenic |
| ACGCAGGTCATAGAGTCTTT+GGG | 0.391806 | 3.4:-50071895 | MS.gene035836:CDS |
| ATCCAAACCCGATCGAGTTC+GGG | 0.394346 | 3.4:-50071969 | MS.gene035836:CDS |
| CCCTCAGACGATTTCTTCCC+AGG | 0.401232 | 3.4:+50070012 | None:intergenic |
| TGTAGACCCTATCAAATTGC+AGG | 0.402948 | 3.4:-50068597 | MS.gene035836:intron |
| AGTTTGCAAGGCACTTGAAA+TGG | 0.408160 | 3.4:-50068569 | MS.gene035836:CDS |
| TTTGGCCATGGTTGAGGGAG+TGG | 0.425743 | 3.4:-50070354 | MS.gene035836:CDS |
| GAGTTGGCGAATCATAGAAA+TGG | 0.426278 | 3.4:+50071922 | None:intergenic |
| GGAGCAATGTGAACTGTCAA+TGG | 0.426611 | 3.4:-50068542 | MS.gene035836:CDS |
| AACTCGATCGGGTTTGGATC+CGG | 0.434921 | 3.4:+50071973 | None:intergenic |
| TGACCGTATGGTTTCAAACC+TGG | 0.441164 | 3.4:-50070030 | MS.gene035836:CDS |
| GCGAATCATAGAAATGGGTT+TGG | 0.446886 | 3.4:+50071928 | None:intergenic |
| GGCAAATAACCTTGACCGTA+TGG | 0.454246 | 3.4:-50070042 | MS.gene035836:CDS |
| ATATCCAGTGGCACTTCATT+GGG | 0.458508 | 3.4:-50070951 | MS.gene035836:CDS |
| TGTCCAAACTTAGAATTCTC+TGG | 0.463779 | 3.4:-50068857 | MS.gene035836:CDS |
| TTCTCTGGCTTAATGACAAT+AGG | 0.469053 | 3.4:-50068842 | MS.gene035836:CDS |
| AGTTGGCGAATCATAGAAAT+GGG | 0.472698 | 3.4:+50071923 | None:intergenic |
| GAACTGTCAATGGGCATGTC+TGG | 0.485338 | 3.4:-50068532 | MS.gene035836:CDS |
| TTCAGTCCTGCAATTTGATA+GGG | 0.493507 | 3.4:+50068591 | None:intergenic |
| TTTCCGCTGCTTGTTGGACA+CGG | 0.495324 | 3.4:+50071999 | None:intergenic |
| CAACAAGCAGCGGAAAGATC+CGG | 0.499909 | 3.4:-50071992 | MS.gene035836:CDS |
| GCAACGACCCGAACTCGATC+GGG | 0.502938 | 3.4:+50071962 | None:intergenic |
| TGCGGAGTTGAGGTATAGTC+TGG | 0.506981 | 3.4:+50068815 | None:intergenic |
| CGGAGTTCCAAATTTGGCCA+TGG | 0.516134 | 3.4:-50070366 | MS.gene035836:CDS |
| TGCAACGACCCGAACTCGAT+CGG | 0.532215 | 3.4:+50071961 | None:intergenic |
| TTCCCAGGTTTGAAACCATA+CGG | 0.534502 | 3.4:+50070027 | None:intergenic |
| GAACATACATTCTTCTCCAC+TGG | 0.540706 | 3.4:+50069971 | None:intergenic |
| AATCGTTGAGAAAGCTCCTC+AGG | 0.548191 | 3.4:-50071855 | MS.gene035836:intron |
| CCGAAAGTTCTGCGGAGTTG+AGG | 0.549382 | 3.4:+50068805 | None:intergenic |
| GAGCAATGTGAACTGTCAAT+GGG | 0.553747 | 3.4:-50068541 | MS.gene035836:CDS |
| GACCGTATGGTTTCAAACCT+GGG | 0.557992 | 3.4:-50070029 | MS.gene035836:CDS |
| AATGCCCAATGAAGTGCCAC+TGG | 0.571037 | 3.4:+50070947 | None:intergenic |
| CGCAGGTCATAGAGTCTTTG+GGG | 0.571253 | 3.4:-50071894 | MS.gene035836:CDS |
| CAAGGCACTTGAAATGGACG+AGG | 0.572444 | 3.4:-50068563 | MS.gene035836:CDS |
| GGTTTGAAACCATACGGTCA+AGG | 0.578649 | 3.4:+50070033 | None:intergenic |
| TTGCAGGACTGAAGTTTGCA+AGG | 0.579031 | 3.4:-50068581 | MS.gene035836:CDS |
| TACTGATCGGAAAGCTAAGA+CGG | 0.579948 | 3.4:+50072027 | None:intergenic |
| TATGACCTGCGTCATAGAGT+TGG | 0.585309 | 3.4:+50071906 | None:intergenic |
| ATTCGCCAACTCTATGACGC+AGG | 0.587190 | 3.4:-50071911 | MS.gene035836:CDS |
| GCAAGATCAACACAATCGGA+AGG | 0.593111 | 3.4:+50068899 | None:intergenic |
| CCTGGGAAGAAATCGTCTGA+GGG | 0.593514 | 3.4:-50070012 | MS.gene035836:CDS |
| ACCTGGGAAGAAATCGTCTG+AGG | 0.602661 | 3.4:-50070013 | MS.gene035836:CDS |
| ATTGTCCACTCCCTCAACCA+TGG | 0.626574 | 3.4:+50070349 | None:intergenic |
| TGAGGGAGTGGACAATCAGA+AGG | 0.626680 | 3.4:-50070342 | MS.gene035836:intron |
| AAGTGCCACTGGATATCTTG+CGG | 0.630043 | 3.4:+50070958 | None:intergenic |
| GCTCCGTGTCCAACAAGCAG+CGG | 0.649023 | 3.4:-50072002 | MS.gene035836:CDS |
| AGCTTCCGCAAGATATCCAG+TGG | 0.660486 | 3.4:-50070963 | MS.gene035836:CDS |
| GGACACGGAGCATTACTGAT+CGG | 0.662757 | 3.4:+50072014 | None:intergenic |
| TTGGTGCAAGTAAACACCAG+TGG | 0.682384 | 3.4:-50069987 | MS.gene035836:CDS |
| ACTATTACCCGAAAGTTCTG+CGG | 0.684747 | 3.4:+50068797 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAATTATAATTATAATTT+AGG | - | chr3.4:50070340-50070359 | MS.gene035836:intron | 0.0% |
| !!! | TTTACAAATAATTTTTAAGT+AGG | - | chr3.4:50069097-50069116 | MS.gene035836:intron | 10.0% |
| !! | AATAGAAAAGTAAAACAATA+TGG | + | chr3.4:50071509-50071528 | None:intergenic | 15.0% |
| !! | ATAACCAAAAAAATATAACA+AGG | + | chr3.4:50070641-50070660 | None:intergenic | 15.0% |
| !! | ATATTGTATTATTGATAGAA+AGG | + | chr3.4:50071002-50071021 | None:intergenic | 15.0% |
| !! | ATCATATAAAGTATAAACAT+CGG | + | chr3.4:50070057-50070076 | None:intergenic | 15.0% |
| !! | TATTGTATTATTGATAGAAA+GGG | + | chr3.4:50071001-50071020 | None:intergenic | 15.0% |
| !! | TTAACAAGTTTATCTATTTA+AGG | + | chr3.4:50071602-50071621 | None:intergenic | 15.0% |
| !!! | AAATCCTTGTTATATTTTTT+TGG | - | chr3.4:50070634-50070653 | MS.gene035836:intron | 15.0% |
| !!! | CATTTATTCTAAGTTATTTT+AGG | + | chr3.4:50069956-50069975 | None:intergenic | 15.0% |
| !!! | TTGTCAATTTCTTAATTTTA+GGG | - | chr3.4:50069393-50069412 | MS.gene035836:intron | 15.0% |
| !!! | TTTACTTTTCTATTATGTAT+TGG | - | chr3.4:50071515-50071534 | MS.gene035836:intron | 15.0% |
| !!! | TTTGTCAATTTCTTAATTTT+AGG | - | chr3.4:50069392-50069411 | MS.gene035836:intron | 15.0% |
| !! | AACATCCTTCATATTTATAA+AGG | - | chr3.4:50070081-50070100 | MS.gene035836:intron | 20.0% |
| !! | AATGATTATGATATTTCAGA+AGG | - | chr3.4:50070806-50070825 | MS.gene035836:intron | 20.0% |
| !! | CATAACTAACTACAATTTAA+TGG | + | chr3.4:50068793-50068812 | None:intergenic | 20.0% |
| !! | TAACTCCTTTATAAATATGA+AGG | + | chr3.4:50070089-50070108 | None:intergenic | 20.0% |
| !! | TATTTATAAAGGAGTTATCT+TGG | - | chr3.4:50070092-50070111 | MS.gene035836:intron | 20.0% |
| !! | TTTAATTATATTCCGACTTA+TGG | + | chr3.4:50071210-50071229 | None:intergenic | 20.0% |
| !!! | ATTTAGTATTTTCTGTTGAT+AGG | - | chr3.4:50070363-50070382 | MS.gene035836:CDS | 20.0% |
| !!! | ATTTTTTAGAATCATTTCGT+GGG | - | chr3.4:50071864-50071883 | MS.gene035836:CDS | 20.0% |
| !!! | GTCATTTTTAAAATGATTAC+CGG | - | chr3.4:50069274-50069293 | MS.gene035836:intron | 20.0% |
| !!! | TATTTTTTAGAATCATTTCG+TGG | - | chr3.4:50071863-50071882 | MS.gene035836:CDS | 20.0% |
| !!! | TTTAAAATGCAATATGAAGA+AGG | + | chr3.4:50068749-50068768 | None:intergenic | 20.0% |
| !!! | TTTAGTATTTTCTGTTGATA+GGG | - | chr3.4:50070364-50070383 | MS.gene035836:CDS | 20.0% |
| !!! | TTTTTTTTTGTAGTTTCACT+AGG | - | chr3.4:50069761-50069780 | MS.gene035836:intron | 20.0% |
| ! | ACACCTATTTATAACAGAAT+TGG | + | chr3.4:50070853-50070872 | None:intergenic | 25.0% |
| ! | ATAATATGAACTCAAGAAAC+AGG | + | chr3.4:50071824-50071843 | None:intergenic | 25.0% |
| ! | ATAATTTCAGGGACAAATTT+GGG | - | chr3.4:50069434-50069453 | MS.gene035836:intron | 25.0% |
| ! | GTTAACGTTTACCTAATATA+AGG | + | chr3.4:50070151-50070170 | None:intergenic | 25.0% |
| ! | TAAAGGTTTGTCAAATGATA+TGG | + | chr3.4:50070466-50070485 | None:intergenic | 25.0% |
| ! | TATAATTTCAGGGACAAATT+TGG | - | chr3.4:50069433-50069452 | MS.gene035836:intron | 25.0% |
| ! | TGACCAATTCTGTTATAAAT+AGG | - | chr3.4:50070847-50070866 | MS.gene035836:intron | 25.0% |
| ! | TTATTCCAAAGTTATTGTAG+TGG | - | chr3.4:50071386-50071405 | MS.gene035836:intron | 25.0% |
| ! | TTCGTTATCATCCTTATATT+AGG | - | chr3.4:50070137-50070156 | MS.gene035836:intron | 25.0% |
| !! | AGTGATTATGTTAGTTTCTA+AGG | - | chr3.4:50071272-50071291 | MS.gene035836:intron | 25.0% |
| !! | AGTTCTAATAATTTGGTCTT+TGG | - | chr3.4:50069562-50069581 | MS.gene035836:intron | 25.0% |
| !! | ATTCCTTTTAGATAACTAGT+TGG | - | chr3.4:50070390-50070409 | MS.gene035836:intron | 25.0% |
| !! | GCTGTAAAGTTCTAATAATT+TGG | - | chr3.4:50069555-50069574 | MS.gene035836:intron | 25.0% |
| !! | GTTCTAATAATTTGGTCTTT+GGG | - | chr3.4:50069563-50069582 | MS.gene035836:intron | 25.0% |
| !!! | ACAATAACTTTGGAATAAGA+GGG | + | chr3.4:50071384-50071403 | None:intergenic | 25.0% |
| !!! | CTAAACTCAAAAGTATTCTA+AGG | + | chr3.4:50069806-50069825 | None:intergenic | 25.0% |
| !!! | TACAATAACTTTGGAATAAG+AGG | + | chr3.4:50071385-50071404 | None:intergenic | 25.0% |
| !!! | TAGTTATATTCTAAAGCATG+TGG | - | chr3.4:50071781-50071800 | MS.gene035836:intron | 25.0% |
| !!! | TATGCTTTAATTTGATCTTC+AGG | - | chr3.4:50070306-50070325 | MS.gene035836:intron | 25.0% |
| !!! | TATTTTTTTGGTTATTTGCG+AGG | - | chr3.4:50070646-50070665 | MS.gene035836:intron | 25.0% |
| !!! | TCTTTTAGCAATATTTTGAG+TGG | - | chr3.4:50069043-50069062 | MS.gene035836:intron | 25.0% |
| AAAAAAAGTTTGAGTACCTG+AGG | + | chr3.4:50068723-50068742 | None:intergenic | 30.0% | |
| AAAAGCCACTACAATAACTT+TGG | + | chr3.4:50071394-50071413 | None:intergenic | 30.0% | |
| AAGTCACAACATACACAATA+AGG | + | chr3.4:50071075-50071094 | None:intergenic | 30.0% | |
| ACTCCAACTAGTTATCTAAA+AGG | + | chr3.4:50070396-50070415 | None:intergenic | 30.0% | |
| AGCTTATTGAAATCACAGTT+TGG | + | chr3.4:50070420-50070439 | None:intergenic | 30.0% | |
| AGTCACAACATACACAATAA+GGG | + | chr3.4:50071074-50071093 | None:intergenic | 30.0% | |
| ATAAATAGGTGTGAAAAGAG+AGG | - | chr3.4:50070861-50070880 | MS.gene035836:intron | 30.0% | |
| ATGAATGTAATCACATGAGT+TGG | + | chr3.4:50069252-50069271 | None:intergenic | 30.0% | |
| ATTCATTGCAGATAATGACA+TGG | - | chr3.4:50071425-50071444 | MS.gene035836:intron | 30.0% | |
| CACTAGGATGTTCAATAAAA+AGG | - | chr3.4:50069777-50069796 | MS.gene035836:intron | 30.0% | |
| CATATTGGATCCAAATAGTA+TGG | + | chr3.4:50070702-50070721 | None:intergenic | 30.0% | |
| CATGTTATCATATGAATGCT+TGG | - | chr3.4:50068965-50068984 | MS.gene035836:intron | 30.0% | |
| CCTACATAATAAAACATGCA+AGG | + | chr3.4:50070173-50070192 | None:intergenic | 30.0% | |
| CGCTAGCAAATATAATTTCA+GGG | - | chr3.4:50069423-50069442 | MS.gene035836:intron | 30.0% | |
| CTTATCCATTAGATACTCTA+TGG | + | chr3.4:50069918-50069937 | None:intergenic | 30.0% | |
| GAAGTACAAGAACACTTTAA+AGG | + | chr3.4:50070483-50070502 | None:intergenic | 30.0% | |
| GTAATCATAGATATAGCTGT+CGG | + | chr3.4:50068870-50068889 | None:intergenic | 30.0% | |
| TAAATAGGTGTGAAAAGAGA+GGG | - | chr3.4:50070862-50070881 | MS.gene035836:intron | 30.0% | |
| TAATTTCAGGGACAAATTTG+GGG | - | chr3.4:50069435-50069454 | MS.gene035836:intron | 30.0% | |
| TAGGATGTTCAATAAAAAGG+TGG | - | chr3.4:50069780-50069799 | MS.gene035836:intron | 30.0% | |
| TAGTTCAACAGCTATTAGAT+TGG | - | chr3.4:50071468-50071487 | MS.gene035836:intron | 30.0% | |
| TATGATATTTCAGAAGGCTA+CGG | - | chr3.4:50070812-50070831 | MS.gene035836:intron | 30.0% | |
| TCGCTAGCAAATATAATTTC+AGG | - | chr3.4:50069422-50069441 | MS.gene035836:intron | 30.0% | |
| TCTGATGTAATTCCATAAGT+CGG | - | chr3.4:50071195-50071214 | MS.gene035836:intron | 30.0% | |
| TGCAAAAAACAAGTTTATCC+CGG | + | chr3.4:50070015-50070034 | None:intergenic | 30.0% | |
| TTATTATCTGTGTTGTGTGT+TGG | - | chr3.4:50068917-50068936 | MS.gene035836:CDS | 30.0% | |
| TTCCTGACACTAAATTAAGA+AGG | + | chr3.4:50071148-50071167 | None:intergenic | 30.0% | |
| TTTGTCTAGCAAAAAAAGAG+AGG | + | chr3.4:50071240-50071259 | None:intergenic | 30.0% | |
| ! | AAACTCCATAGAGTATCTAA+TGG | - | chr3.4:50069910-50069929 | MS.gene035836:intron | 30.0% |
| ! | AAGAAGTTGAAATCAGCTTT+TGG | + | chr3.4:50069885-50069904 | None:intergenic | 30.0% |
| ! | AATGGATAAGTGCTTGATTT+TGG | - | chr3.4:50069928-50069947 | MS.gene035836:intron | 30.0% |
| ! | ACTGTAATGTCTATTTGCTA+AGG | - | chr3.4:50071921-50071940 | MS.gene035836:CDS | 30.0% |
| ! | AGAAGTTGAAATCAGCTTTT+GGG | + | chr3.4:50069884-50069903 | None:intergenic | 30.0% |
| ! | CAGAGATTTATCTCTTTTTG+AGG | - | chr3.4:50070929-50070948 | MS.gene035836:CDS | 30.0% |
| ! | TATCTTCTCCTCTTAATTTG+AGG | - | chr3.4:50071019-50071038 | MS.gene035836:intron | 30.0% |
| ! | TTTTGCAAGATCAACACAAT+CGG | + | chr3.4:50071667-50071686 | None:intergenic | 30.0% |
| !! | AATAACTTTGGAATAAGAGG+GGG | + | chr3.4:50071382-50071401 | None:intergenic | 30.0% |
| !! | ATTATCTAGACAGTTCTAAG+TGG | - | chr3.4:50069989-50070008 | MS.gene035836:CDS | 30.0% |
| !! | CAATAACTTTGGAATAAGAG+GGG | + | chr3.4:50071383-50071402 | None:intergenic | 30.0% |
| !! | CCTTGCATGTTTTATTATGT+AGG | - | chr3.4:50070170-50070189 | MS.gene035836:intron | 30.0% |
| !! | TGCATGTTTTATTATGTAGG+CGG | - | chr3.4:50070173-50070192 | MS.gene035836:intron | 30.0% |
| !!! | TGTGTTATTTTTGTTCTGTC+TGG | - | chr3.4:50069533-50069552 | MS.gene035836:intron | 30.0% |
| AAGCCAGAGAATTCTAAGTT+TGG | + | chr3.4:50071708-50071727 | None:intergenic | 35.0% | |
| AATATTGTTGCAGCCAAATC+AGG | - | chr3.4:50071630-50071649 | MS.gene035836:intron | 35.0% | |
| ACGAAAAACTTGTATGCATG+AGG | - | chr3.4:50069145-50069164 | MS.gene035836:intron | 35.0% | |
| AGCCTTCTTAATTTAGTGTC+AGG | - | chr3.4:50071143-50071162 | MS.gene035836:intron | 35.0% | |
| AGTATAAACATCGGAAACAG+TGG | + | chr3.4:50070048-50070067 | None:intergenic | 35.0% | |
| AGTTGGCGAATCATAGAAAT+GGG | + | chr3.4:50068639-50068658 | None:intergenic | 35.0% | |
| ATGATATTTCAGAAGGCTAC+GGG | - | chr3.4:50070813-50070832 | MS.gene035836:intron | 35.0% | |
| CTAGTAAAATTGAGGAAGGA+GGG | - | chr3.4:50070782-50070801 | MS.gene035836:intron | 35.0% | |
| CTATGCTCTTAGAACTGTAA+AGG | - | chr3.4:50070897-50070916 | MS.gene035836:intron | 35.0% | |
| CTCTTAGAACTGTAAAGGTT+GGG | - | chr3.4:50070902-50070921 | MS.gene035836:intron | 35.0% | |
| GACACTAAATTAAGAAGGCT+CGG | + | chr3.4:50071143-50071162 | None:intergenic | 35.0% | |
| GAGTGATGCTAGTAAAATTG+AGG | - | chr3.4:50070774-50070793 | MS.gene035836:intron | 35.0% | |
| GATAGGAACCTCAAATTAAG+AGG | + | chr3.4:50071030-50071049 | None:intergenic | 35.0% | |
| GATGCTAGTAAAATTGAGGA+AGG | - | chr3.4:50070778-50070797 | MS.gene035836:intron | 35.0% | |
| GGAATTAACTAATGGCCTTT+GGG | + | chr3.4:50070735-50070754 | None:intergenic | 35.0% | |
| GTGCATTGTTTGTCAGAATA+CGG | - | chr3.4:50071566-50071585 | MS.gene035836:intron | 35.0% | |
| TAAAGGAGTTATCTTGGTTG+AGG | - | chr3.4:50070098-50070117 | MS.gene035836:intron | 35.0% | |
| TGGATCCAATATGTGAATGT+GGG | - | chr3.4:50070709-50070728 | MS.gene035836:intron | 35.0% | |
| TGTCCAAACTTAGAATTCTC+TGG | - | chr3.4:50071702-50071721 | MS.gene035836:intron | 35.0% | |
| TGTTCTTGTACTTCTGTAAC+TGG | - | chr3.4:50070489-50070508 | MS.gene035836:intron | 35.0% | |
| TTATCTTGGTTGAGGTTGTT+TGG | - | chr3.4:50070106-50070125 | MS.gene035836:intron | 35.0% | |
| TTCAGTCCTGCAATTTGATA+GGG | + | chr3.4:50071971-50071990 | None:intergenic | 35.0% | |
| TTGGATCCAATATGTGAATG+TGG | - | chr3.4:50070708-50070727 | MS.gene035836:intron | 35.0% | |
| TTGTCAAATGATATGGCAAG+TGG | + | chr3.4:50070459-50070478 | None:intergenic | 35.0% | |
| ! | TCTGCATCACTGTAATTTTG+TGG | - | chr3.4:50071102-50071121 | MS.gene035836:intron | 35.0% |
| ! | TTCATATCTCTAAGAGCTAC+TGG | + | chr3.4:50070265-50070284 | None:intergenic | 35.0% |
| ! | TTCTCTGGCTTAATGACAAT+AGG | - | chr3.4:50071717-50071736 | MS.gene035836:intron | 35.0% |
| !! | ATAACTTTGGAATAAGAGGG+GGG | + | chr3.4:50071381-50071400 | None:intergenic | 35.0% |
| !! | CATAGAAATGGGTTTGGTTT+TGG | + | chr3.4:50068628-50068647 | None:intergenic | 35.0% |
| !! | CTTTACAGTTCTAAGAGCAT+AGG | + | chr3.4:50070899-50070918 | None:intergenic | 35.0% |
| !! | TTGAAGGAGTTTTAACCAAG+AGG | + | chr3.4:50071311-50071330 | None:intergenic | 35.0% |
| !!! | AAGCATACTCAGAAGTGTTT+TGG | + | chr3.4:50069653-50069672 | None:intergenic | 35.0% |
| ACTATTACCCGAAAGTTCTG+CGG | + | chr3.4:50071765-50071784 | None:intergenic | 40.0% | |
| AGATACGCAGAGTATGTGAT+AGG | + | chr3.4:50071047-50071066 | None:intergenic | 40.0% | |
| ATATCCAGTGGCACTTCATT+GGG | - | chr3.4:50069608-50069627 | MS.gene035836:intron | 40.0% | |
| ATTCCCTCAAGCCTATTATG+TGG | - | chr3.4:50070750-50070769 | MS.gene035836:intron | 40.0% | |
| CTAAGAGCTACTGGTAATAC+TGG | + | chr3.4:50070256-50070275 | None:intergenic | 40.0% | |
| CTTCAGTCCTGCAATTTGAT+AGG | + | chr3.4:50071972-50071991 | None:intergenic | 40.0% | |
| GAACATACATTCTTCTCCAC+TGG | + | chr3.4:50070591-50070610 | None:intergenic | 40.0% | |
| GAGCAATGTGAACTGTCAAT+GGG | - | chr3.4:50072018-50072037 | MS.gene035836:CDS | 40.0% | |
| GAGCTTTCTCAACGATTTCT+TGG | + | chr3.4:50068701-50068720 | None:intergenic | 40.0% | |
| GAGTTGGCGAATCATAGAAA+TGG | + | chr3.4:50068640-50068659 | None:intergenic | 40.0% | |
| GCACGAACATTTCTGATTGA+AGG | - | chr3.4:50069184-50069203 | MS.gene035836:intron | 40.0% | |
| GCTAGTAAAATTGAGGAAGG+AGG | - | chr3.4:50070781-50070800 | MS.gene035836:intron | 40.0% | |
| GCTCTTAGAACTGTAAAGGT+TGG | - | chr3.4:50070901-50070920 | MS.gene035836:intron | 40.0% | |
| GGCTTGAGGGAATTAACTAA+TGG | + | chr3.4:50070743-50070762 | None:intergenic | 40.0% | |
| GGGAATTAACTAATGGCCTT+TGG | + | chr3.4:50070736-50070755 | None:intergenic | 40.0% | |
| GTCACTAATGGAAGTGATGA+TGG | - | chr3.4:50069332-50069351 | MS.gene035836:intron | 40.0% | |
| GTCTAGCAAAAAAAGAGAGG+TGG | + | chr3.4:50071237-50071256 | None:intergenic | 40.0% | |
| TACTGATCGGAAAGCTAAGA+CGG | + | chr3.4:50068535-50068554 | None:intergenic | 40.0% | |
| TATGAAACACAGACACTCCT+CGG | - | chr3.4:50068809-50068828 | MS.gene035836:CDS | 40.0% | |
| TGTAGACCCTATCAAATTGC+AGG | - | chr3.4:50071962-50071981 | MS.gene035836:CDS | 40.0% | |
| TTCCCTCAAGCCTATTATGT+GGG | - | chr3.4:50070751-50070770 | MS.gene035836:intron | 40.0% | |
| ! | AAGAAATCGTCTGAGGGTTT+TGG | - | chr3.4:50070553-50070572 | MS.gene035836:intron | 40.0% |
| ! | AGTTTGCAAGGCACTTGAAA+TGG | - | chr3.4:50071990-50072009 | MS.gene035836:CDS | 40.0% |
| ! | GCGAATCATAGAAATGGGTT+TGG | + | chr3.4:50068634-50068653 | None:intergenic | 40.0% |
| ! | TTCCCAGGTTTGAAACCATA+CGG | + | chr3.4:50070535-50070554 | None:intergenic | 40.0% |
| !! | AGGAGTTTTAACCAAGAGGT+CGG | + | chr3.4:50071307-50071326 | None:intergenic | 40.0% |
| !! | TTTTGAGGAGCAATAGCTCT+GGG | - | chr3.4:50070944-50070963 | MS.gene035836:CDS | 40.0% |
| !! | TTTTTGAGGAGCAATAGCTC+TGG | - | chr3.4:50070943-50070962 | MS.gene035836:CDS | 40.0% |
| AATCGTTGAGAAAGCTCCTC+AGG | - | chr3.4:50068704-50068723 | MS.gene035836:intron | 45.0% | |
| ACGCAGGTCATAGAGTCTTT+GGG | - | chr3.4:50068664-50068683 | MS.gene035836:intron | 45.0% | |
| AGCATCACTCCCCACATAAT+AGG | + | chr3.4:50070764-50070783 | None:intergenic | 45.0% | |
| ATATGTGAATGTGGGCCCAA+AGG | - | chr3.4:50070717-50070736 | MS.gene035836:intron | 45.0% | |
| CAACGTGTCAGTGTCAAGTT+CGG | - | chr3.4:50069300-50069319 | MS.gene035836:intron | 45.0% | |
| CCAAATTTGGCCATGGTTGA+GGG | - | chr3.4:50070200-50070219 | MS.gene035836:intron | 45.0% | |
| CGAAGCTGAGCCATACTATT+TGG | - | chr3.4:50070689-50070708 | MS.gene035836:intron | 45.0% | |
| CTTGTACTTCTGTAACTGGC+AGG | - | chr3.4:50070493-50070512 | MS.gene035836:intron | 45.0% | |
| GAATCATTTCGTGGGTTTCG+TGG | - | chr3.4:50071872-50071891 | MS.gene035836:CDS | 45.0% | |
| GACATTACAGTTCAGCATCG+AGG | + | chr3.4:50071912-50071931 | None:intergenic | 45.0% | |
| GACCGTATGGTTTCAAACCT+GGG | - | chr3.4:50070530-50070549 | MS.gene035836:intron | 45.0% | |
| GATATCCAGTGGCACTTCAT+TGG | - | chr3.4:50069607-50069626 | MS.gene035836:intron | 45.0% | |
| GATGAGCTGAGCAATGTTGA+AGG | + | chr3.4:50071327-50071346 | None:intergenic | 45.0% | |
| GCAAGATCAACACAATCGGA+AGG | + | chr3.4:50071663-50071682 | None:intergenic | 45.0% | |
| GGAAGGATCAACACCTGATT+TGG | + | chr3.4:50071646-50071665 | None:intergenic | 45.0% | |
| GGAGCAATGTGAACTGTCAA+TGG | - | chr3.4:50072017-50072036 | MS.gene035836:CDS | 45.0% | |
| GGCAAATAACCTTGACCGTA+TGG | - | chr3.4:50070517-50070536 | MS.gene035836:intron | 45.0% | |
| TATGACCTGCGTCATAGAGT+TGG | + | chr3.4:50068656-50068675 | None:intergenic | 45.0% | |
| TCCAAATTTGGCCATGGTTG+AGG | - | chr3.4:50070199-50070218 | MS.gene035836:intron | 45.0% | |
| TCCCCACATAATAGGCTTGA+GGG | + | chr3.4:50070756-50070775 | None:intergenic | 45.0% | |
| TCCCTCAAGCCTATTATGTG+GGG | - | chr3.4:50070752-50070771 | MS.gene035836:intron | 45.0% | |
| TGACACGTGTGTCAAAAACC+AGG | + | chr3.4:50069214-50069233 | None:intergenic | 45.0% | |
| TGACCGTATGGTTTCAAACC+TGG | - | chr3.4:50070529-50070548 | MS.gene035836:intron | 45.0% | |
| TGTAGGCGGAGTTCCAAATT+TGG | - | chr3.4:50070187-50070206 | MS.gene035836:intron | 45.0% | |
| TTGCAGGACTGAAGTTTGCA+AGG | - | chr3.4:50071978-50071997 | MS.gene035836:CDS | 45.0% | |
| TTGGGCCCACATTCACATAT+TGG | + | chr3.4:50070717-50070736 | None:intergenic | 45.0% | |
| TTGGTGCAAGTAAACACCAG+TGG | - | chr3.4:50070572-50070591 | MS.gene035836:intron | 45.0% | |
| ! | AAGTGCCACTGGATATCTTG+CGG | + | chr3.4:50069604-50069623 | None:intergenic | 45.0% |
| ! | GGTTTGAAACCATACGGTCA+AGG | + | chr3.4:50070529-50070548 | None:intergenic | 45.0% |
| ! | TTTCTGATTGAAGGTGTGCC+TGG | - | chr3.4:50069193-50069212 | MS.gene035836:intron | 45.0% |
| ! | TTTGAGGAGCAATAGCTCTG+GGG | - | chr3.4:50070945-50070964 | MS.gene035836:CDS | 45.0% |
| !! | ACATGAGTTGGTGTTGTGTC+AGG | + | chr3.4:50069240-50069259 | None:intergenic | 45.0% |
| !! | GGAGTTTTAACCAAGAGGTC+GGG | + | chr3.4:50071306-50071325 | None:intergenic | 45.0% |
| !! | GGGCACGTCATTGTTTCTAT+AGG | + | chr3.4:50069864-50069883 | None:intergenic | 45.0% |
| !! | TCTAGACAGTTCTAAGTGGC+CGG | - | chr3.4:50069993-50070012 | MS.gene035836:CDS | 45.0% |
| AACTCGATCGGGTTTGGATC+CGG | + | chr3.4:50068589-50068608 | None:intergenic | 50.0% | |
| ACACAGACACTCCTCGGATT+AGG | - | chr3.4:50068815-50068834 | MS.gene035836:CDS | 50.0% | |
| ACCTGGGAAGAAATCGTCTG+AGG | - | chr3.4:50070546-50070565 | MS.gene035836:intron | 50.0% | |
| AGCTTCCGCAAGATATCCAG+TGG | - | chr3.4:50069596-50069615 | MS.gene035836:intron | 50.0% | |
| ATCAACCGAGCTGCCTACTT+AGG | - | chr3.4:50071344-50071363 | MS.gene035836:intron | 50.0% | |
| ATCCAAACCCGATCGAGTTC+GGG | - | chr3.4:50068590-50068609 | MS.gene035836:CDS | 50.0% | |
| ATTCGCCAACTCTATGACGC+AGG | - | chr3.4:50068648-50068667 | MS.gene035836:intron | 50.0% | |
| ATTGTCCACTCCCTCAACCA+TGG | + | chr3.4:50070213-50070232 | None:intergenic | 50.0% | |
| CAACAAGCAGCGGAAAGATC+CGG | - | chr3.4:50068567-50068586 | MS.gene035836:CDS | 50.0% | |
| CCCTCAACCATGGCCAAATT+TGG | + | chr3.4:50070203-50070222 | None:intergenic | 50.0% | |
| CCTCAACTCCGCAGAACTTT+CGG | - | chr3.4:50071754-50071773 | MS.gene035836:intron | 50.0% | |
| CCTGGGAAGAAATCGTCTGA+GGG | - | chr3.4:50070547-50070566 | MS.gene035836:intron | 50.0% | |
| CGCAGGTCATAGAGTCTTTG+GGG | - | chr3.4:50068665-50068684 | MS.gene035836:intron | 50.0% | |
| CGGAGTTCCAAATTTGGCCA+TGG | - | chr3.4:50070193-50070212 | MS.gene035836:intron | 50.0% | |
| CGGTGTGCGTATGTCACTAA+TGG | - | chr3.4:50069320-50069339 | MS.gene035836:intron | 50.0% | |
| CTCAACTCCGCAGAACTTTC+GGG | - | chr3.4:50071755-50071774 | MS.gene035836:intron | 50.0% | |
| CTCCCCACATAATAGGCTTG+AGG | + | chr3.4:50070757-50070776 | None:intergenic | 50.0% | |
| GAACTGTCAATGGGCATGTC+TGG | - | chr3.4:50072027-50072046 | MS.gene035836:CDS | 50.0% | |
| GAAGCACAGAGACACAGACA+CGG | + | chr3.4:50068946-50068965 | None:intergenic | 50.0% | |
| GACGCAGGTCATAGAGTCTT+TGG | - | chr3.4:50068663-50068682 | MS.gene035836:intron | 50.0% | |
| GATCCAAACCCGATCGAGTT+CGG | - | chr3.4:50068589-50068608 | MS.gene035836:CDS | 50.0% | |
| GTACTTCTGTAACTGGCAGG+TGG | - | chr3.4:50070496-50070515 | MS.gene035836:intron | 50.0% | |
| TGACACTGACACGTTGACAC+CGG | + | chr3.4:50069296-50069315 | None:intergenic | 50.0% | |
| TGAGGGAGTGGACAATCAGA+AGG | - | chr3.4:50070217-50070236 | MS.gene035836:intron | 50.0% | |
| TGAGTCCTAAGTAGGCAGCT+CGG | + | chr3.4:50071352-50071371 | None:intergenic | 50.0% | |
| TGCGGAGTTGAGGTATAGTC+TGG | + | chr3.4:50071747-50071766 | None:intergenic | 50.0% | |
| ! | AATGCCCAATGAAGTGCCAC+TGG | + | chr3.4:50069615-50069634 | None:intergenic | 50.0% |
| ! | CAAGGCACTTGAAATGGACG+AGG | - | chr3.4:50071996-50072015 | MS.gene035836:CDS | 50.0% |
| ! | CGAGGTTTTCGTACATCCTC+GGG | - | chr3.4:50070664-50070683 | MS.gene035836:intron | 50.0% |
| ! | GCGAGGTTTTCGTACATCCT+CGG | - | chr3.4:50070663-50070682 | MS.gene035836:intron | 50.0% |
| ! | GGAAGGTGTGAGTCCTAAGT+AGG | + | chr3.4:50071360-50071379 | None:intergenic | 50.0% |
| ! | GGACACGGAGCATTACTGAT+CGG | + | chr3.4:50068548-50068567 | None:intergenic | 50.0% |
| ! | TTTCCGCTGCTTGTTGGACA+CGG | + | chr3.4:50068563-50068582 | None:intergenic | 50.0% |
| !! | CTAGACAGTTCTAAGTGGCC+GGG | - | chr3.4:50069994-50070013 | MS.gene035836:CDS | 50.0% |
| !! | CTTTGGAATAAGAGGGGGGA+AGG | + | chr3.4:50071377-50071396 | None:intergenic | 50.0% |
| CCCTCAGACGATTTCTTCCC+AGG | + | chr3.4:50070550-50070569 | None:intergenic | 55.0% | |
| CCGAAAGTTCTGCGGAGTTG+AGG | + | chr3.4:50071757-50071776 | None:intergenic | 55.0% | |
| CGGATCTTTCCGCTGCTTGT+TGG | + | chr3.4:50068569-50068588 | None:intergenic | 55.0% | |
| GATTAGGCGTGTCACGGTGT+CGG | - | chr3.4:50068831-50068850 | MS.gene035836:CDS | 55.0% | |
| GGTTAGAACTCCCGACCTCT+TGG | - | chr3.4:50071293-50071312 | MS.gene035836:intron | 55.0% | |
| TGCAACGACCCGAACTCGAT+CGG | + | chr3.4:50068601-50068620 | None:intergenic | 55.0% | |
| TTTGGCCATGGTTGAGGGAG+TGG | - | chr3.4:50070205-50070224 | MS.gene035836:intron | 55.0% | |
| ! | TCCTCGGATTAGGCGTGTCA+CGG | - | chr3.4:50068825-50068844 | MS.gene035836:CDS | 55.0% |
| ACCGTGACACGCCTAATCCG+AGG | + | chr3.4:50068829-50068848 | None:intergenic | 60.0% | |
| GACCCGAACTCGATCGGGTT+TGG | + | chr3.4:50068595-50068614 | None:intergenic | 60.0% | |
| GCAACGACCCGAACTCGATC+GGG | + | chr3.4:50068600-50068619 | None:intergenic | 60.0% | |
| GCTCCGTGTCCAACAAGCAG+CGG | - | chr3.4:50068557-50068576 | MS.gene035836:CDS | 60.0% | |
| ATGGCTCAGCTTCGTGCCCG+AGG | + | chr3.4:50070683-50070702 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 50068516 | 50072065 | 50068516 | ID=MS.gene035836 |
| chr3.4 | mRNA | 50068516 | 50072065 | 50068516 | ID=MS.gene035836.t1;Parent=MS.gene035836 |
| chr3.4 | exon | 50071856 | 50072065 | 50071856 | ID=MS.gene035836.t1.exon1;Parent=MS.gene035836.t1 |
| chr3.4 | CDS | 50071856 | 50072065 | 50071856 | ID=cds.MS.gene035836.t1;Parent=MS.gene035836.t1 |
| chr3.4 | exon | 50070917 | 50070983 | 50070917 | ID=MS.gene035836.t1.exon2;Parent=MS.gene035836.t1 |
| chr3.4 | CDS | 50070917 | 50070983 | 50070917 | ID=cds.MS.gene035836.t1;Parent=MS.gene035836.t1 |
| chr3.4 | exon | 50070343 | 50070389 | 50070343 | ID=MS.gene035836.t1.exon3;Parent=MS.gene035836.t1 |
| chr3.4 | CDS | 50070343 | 50070389 | 50070343 | ID=cds.MS.gene035836.t1;Parent=MS.gene035836.t1 |
| chr3.4 | exon | 50069979 | 50070066 | 50069979 | ID=MS.gene035836.t1.exon4;Parent=MS.gene035836.t1 |
| chr3.4 | CDS | 50069979 | 50070066 | 50069979 | ID=cds.MS.gene035836.t1;Parent=MS.gene035836.t1 |
| chr3.4 | exon | 50068805 | 50068938 | 50068805 | ID=MS.gene035836.t1.exon5;Parent=MS.gene035836.t1 |
| chr3.4 | CDS | 50068805 | 50068938 | 50068805 | ID=cds.MS.gene035836.t1;Parent=MS.gene035836.t1 |
| chr3.4 | exon | 50068516 | 50068614 | 50068516 | ID=MS.gene035836.t1.exon6;Parent=MS.gene035836.t1 |
| chr3.4 | CDS | 50068516 | 50068614 | 50068516 | ID=cds.MS.gene035836.t1;Parent=MS.gene035836.t1 |
| Gene Sequence |
| Protein sequence |
