Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene036170.t1 | XP_003590550.1 | 100 | 134 | 0 | 0 | 1 | 134 | 1 | 134 | 8.80E-65 | 256.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene036170.t1 | Q8S857 | 90.6 | 139 | 8 | 2 | 1 | 134 | 1 | 139 | 4.3e-60 | 231.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene036170.t1 | G7ICP3 | 100.0 | 134 | 0 | 0 | 1 | 134 | 1 | 134 | 6.3e-65 | 256.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene036170 | MS.gene029348 | PPI |
MS.gene036170 | MS.gene065078 | PPI |
MS.gene036170 | MS.gene76254 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene036170.t1 | MTR_1g071040 | 100.000 | 134 | 0 | 0 | 1 | 134 | 1 | 134 | 1.08e-93 | 266 |
MS.gene036170.t1 | MTR_1g114050 | 91.473 | 129 | 11 | 0 | 6 | 134 | 3 | 131 | 5.70e-82 | 236 |
MS.gene036170.t1 | MTR_1g011750 | 86.567 | 134 | 18 | 0 | 1 | 134 | 1 | 134 | 1.01e-79 | 231 |
MS.gene036170.t1 | MTR_1g011850 | 86.567 | 134 | 18 | 0 | 1 | 134 | 1 | 134 | 1.01e-79 | 231 |
MS.gene036170.t1 | MTR_4g048490 | 67.910 | 134 | 14 | 1 | 1 | 134 | 1 | 105 | 1.86e-47 | 149 |
MS.gene036170.t1 | MTR_7g027610 | 67.213 | 122 | 14 | 2 | 13 | 134 | 3 | 98 | 5.87e-44 | 140 |
MS.gene036170.t1 | MTR_2g082510 | 64.545 | 110 | 37 | 2 | 24 | 132 | 14 | 122 | 1.02e-39 | 130 |
MS.gene036170.t1 | MTR_2g082220 | 64.545 | 110 | 37 | 2 | 24 | 132 | 14 | 122 | 1.22e-39 | 129 |
MS.gene036170.t1 | MTR_7g108320 | 59.016 | 122 | 47 | 3 | 11 | 130 | 6 | 126 | 2.72e-39 | 129 |
MS.gene036170.t1 | MTR_7g114060 | 59.664 | 119 | 45 | 3 | 14 | 130 | 6 | 123 | 1.44e-38 | 127 |
MS.gene036170.t1 | MTR_7g114040 | 59.664 | 119 | 45 | 3 | 14 | 130 | 6 | 123 | 1.44e-38 | 127 |
MS.gene036170.t1 | MTR_7g093910 | 55.118 | 127 | 50 | 3 | 10 | 130 | 1 | 126 | 5.28e-38 | 126 |
MS.gene036170.t1 | MTR_2g096610 | 60.550 | 109 | 41 | 2 | 23 | 130 | 19 | 126 | 3.48e-36 | 121 |
MS.gene036170.t1 | MTR_0653s0030 | 61.111 | 108 | 17 | 1 | 5 | 112 | 15 | 97 | 4.60e-36 | 121 |
MS.gene036170.t1 | MTR_7g113160 | 55.752 | 113 | 48 | 2 | 19 | 130 | 19 | 130 | 5.97e-36 | 120 |
MS.gene036170.t1 | MTR_4g063280 | 60.550 | 109 | 41 | 2 | 23 | 130 | 15 | 122 | 1.83e-35 | 119 |
MS.gene036170.t1 | MTR_4g071150 | 62.500 | 104 | 37 | 2 | 28 | 130 | 26 | 128 | 8.63e-35 | 118 |
MS.gene036170.t1 | MTR_4g064967 | 60.952 | 105 | 39 | 2 | 27 | 130 | 25 | 128 | 1.30e-34 | 117 |
MS.gene036170.t1 | MTR_2g096570 | 60.952 | 105 | 39 | 2 | 27 | 130 | 24 | 127 | 1.80e-34 | 117 |
MS.gene036170.t1 | MTR_4g064005 | 61.538 | 104 | 38 | 2 | 28 | 130 | 26 | 128 | 1.86e-34 | 117 |
MS.gene036170.t1 | MTR_8g086640 | 58.716 | 109 | 43 | 2 | 27 | 134 | 25 | 132 | 2.56e-34 | 117 |
MS.gene036170.t1 | MTR_4g063410 | 60.000 | 105 | 40 | 2 | 27 | 130 | 25 | 128 | 5.83e-34 | 115 |
MS.gene036170.t1 | MTR_7g114050 | 49.593 | 123 | 48 | 5 | 10 | 130 | 4 | 114 | 6.31e-27 | 97.4 |
MS.gene036170.t1 | MTR_4g063300 | 62.687 | 67 | 24 | 1 | 55 | 120 | 17 | 83 | 1.66e-20 | 80.9 |
MS.gene036170.t1 | MTR_6g005150 | 45.283 | 106 | 47 | 4 | 27 | 130 | 27 | 123 | 3.00e-19 | 78.2 |
MS.gene036170.t1 | MTR_7g427690 | 78.947 | 38 | 8 | 0 | 96 | 133 | 412 | 449 | 3.05e-12 | 62.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene036170.t1 | AT3G54560 | 91.912 | 136 | 9 | 1 | 1 | 134 | 1 | 136 | 5.04e-79 | 229 |
MS.gene036170.t1 | AT3G54560 | 91.912 | 136 | 9 | 1 | 1 | 134 | 1 | 136 | 5.04e-79 | 229 |
MS.gene036170.t1 | AT2G38810 | 89.706 | 136 | 12 | 1 | 1 | 134 | 1 | 136 | 8.18e-77 | 224 |
MS.gene036170.t1 | AT2G38810 | 89.706 | 136 | 12 | 1 | 1 | 134 | 1 | 136 | 8.18e-77 | 224 |
MS.gene036170.t1 | AT2G38810 | 89.706 | 136 | 12 | 1 | 1 | 134 | 1 | 136 | 8.18e-77 | 224 |
MS.gene036170.t1 | AT2G38810 | 89.706 | 136 | 12 | 1 | 1 | 134 | 1 | 136 | 8.18e-77 | 224 |
MS.gene036170.t1 | AT1G52740 | 82.836 | 134 | 23 | 0 | 1 | 134 | 1 | 134 | 2.06e-71 | 210 |
MS.gene036170.t1 | AT4G13570 | 78.022 | 91 | 20 | 0 | 34 | 124 | 28 | 118 | 3.18e-47 | 148 |
MS.gene036170.t1 | AT4G13570 | 78.889 | 90 | 19 | 0 | 35 | 124 | 35 | 124 | 6.47e-47 | 148 |
MS.gene036170.t1 | AT3G20670 | 64.545 | 110 | 37 | 2 | 24 | 132 | 14 | 122 | 6.35e-40 | 130 |
MS.gene036170.t1 | AT4G27230 | 64.545 | 110 | 37 | 2 | 24 | 132 | 14 | 122 | 1.04e-39 | 130 |
MS.gene036170.t1 | AT4G27230 | 64.545 | 110 | 37 | 2 | 24 | 132 | 14 | 122 | 1.04e-39 | 130 |
MS.gene036170.t1 | AT5G54640 | 64.545 | 110 | 37 | 2 | 24 | 132 | 14 | 122 | 1.13e-39 | 130 |
MS.gene036170.t1 | AT1G51060 | 63.889 | 108 | 37 | 2 | 24 | 130 | 14 | 120 | 4.16e-39 | 128 |
MS.gene036170.t1 | AT5G02560 | 60.177 | 113 | 43 | 2 | 23 | 134 | 21 | 132 | 1.12e-38 | 128 |
MS.gene036170.t1 | AT1G08880 | 59.829 | 117 | 44 | 3 | 14 | 128 | 9 | 124 | 1.56e-38 | 127 |
MS.gene036170.t1 | AT1G54690 | 59.829 | 117 | 44 | 3 | 14 | 128 | 9 | 124 | 1.94e-38 | 127 |
MS.gene036170.t1 | AT5G27670 | 60.177 | 113 | 43 | 2 | 19 | 130 | 18 | 129 | 9.18e-37 | 123 |
MS.gene036170.t1 | AT5G59870 | 59.633 | 109 | 42 | 2 | 23 | 130 | 21 | 128 | 7.33e-35 | 118 |
MS.gene036170.t1 | AT5G02560 | 49.635 | 137 | 43 | 3 | 23 | 134 | 21 | 156 | 2.88e-33 | 115 |
Find 42 sgRNAs with CRISPR-Local
Find 91 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GGCATTTGCAGCTTGCTATC+AGG | 0.247896 | 1.3:+51024226 | MS.gene036170:CDS |
AGCAACAGCTGCAGTGTATT+TGG | 0.282329 | 1.3:+51024116 | MS.gene036170:CDS |
TTCTTCTCGTGCTGGAATTC+AGG | 0.284428 | 1.3:+51023104 | MS.gene036170:CDS |
AAAGCAAAGAAATCATTCTT+TGG | 0.335830 | 1.3:-51024340 | None:intergenic |
AGTGTATTTGGCATCCATTC+TGG | 0.360664 | 1.3:+51024128 | MS.gene036170:CDS |
CAGCAATTGTTCCCTTGATA+AGG | 0.371937 | 1.3:-51024269 | None:intergenic |
CTTATCAAGGGAACAATTGC+TGG | 0.372156 | 1.3:+51024270 | MS.gene036170:CDS |
CTCCGACACGTCCATTAGCT+TGG | 0.422586 | 1.3:-51024095 | None:intergenic |
AGCAATTGTTCCCTTGATAA+GGG | 0.441041 | 1.3:-51024268 | None:intergenic |
AAGCAAAGAGTCCAAGCTAA+TGG | 0.447447 | 1.3:+51024084 | MS.gene036170:CDS |
ACTTCTCGTTCTTCTCGTGC+TGG | 0.468244 | 1.3:+51023096 | MS.gene036170:CDS |
AAATGCTAGCAAAGATTTGA+AGG | 0.477120 | 1.3:+51024185 | MS.gene036170:CDS |
GACTGCTGAAGTTCTTGAGC+TGG | 0.480553 | 1.3:+51024158 | MS.gene036170:CDS |
CTCTTTGCTTCAGCTGTCTG+TGG | 0.485476 | 1.3:-51024071 | None:intergenic |
GCATTTGCAGCTTGCTATCA+GGG | 0.487874 | 1.3:+51024227 | MS.gene036170:CDS |
GCTGAAGTTCTTGAGCTGGC+TGG | 0.490963 | 1.3:+51024162 | MS.gene036170:CDS |
TCAGGTGATTAAGCAATGGC+AGG | 0.495436 | 1.3:+51023003 | None:intergenic |
ATGGCAGGAAAAGGAGGAAA+AGG | 0.512104 | 1.3:+51023018 | MS.gene036170:CDS |
GGAACTTGATACCCTTATCA+AGG | 0.512125 | 1.3:+51024257 | MS.gene036170:CDS |
GATTAAGCAATGGCAGGAAA+AGG | 0.523608 | 1.3:+51023009 | None:intergenic |
CTTGTCTTTGTTAGCCGCGG+TGG | 0.527714 | 1.3:-51023058 | None:intergenic |
GTCCTTGTCTTTGTTAGCCG+CGG | 0.546728 | 1.3:-51023061 | None:intergenic |
GCAAAGATTTGAAGGTGAAG+AGG | 0.563947 | 1.3:+51024193 | MS.gene036170:CDS |
TGGTGGTTGTAGTTTCCTGT+GGG | 0.573166 | 1.3:+51024042 | MS.gene036170:intron |
ATGGTGGTTGTAGTTTCCTG+TGG | 0.574055 | 1.3:+51024041 | MS.gene036170:intron |
GGTTGTAGTTTCCTGTGGGT+AGG | 0.590033 | 1.3:+51024046 | MS.gene036170:intron |
AGCAGTCAGATACTCCAGAA+TGG | 0.591746 | 1.3:-51024142 | None:intergenic |
ATAGCAAGCTGCAAATGCCT+TGG | 0.592261 | 1.3:-51024222 | None:intergenic |
GCTTGCTATCAGGGGAGATG+AGG | 0.593400 | 1.3:+51024236 | MS.gene036170:CDS |
GTCCAAGCTAATGGACGTGT+CGG | 0.596665 | 1.3:+51024093 | MS.gene036170:CDS |
TAAGCAATGGCAGGAAAAGG+AGG | 0.606722 | 1.3:+51023012 | None:intergenic |
AGCACGAGAAGAACGAGAAG+TGG | 0.609010 | 1.3:-51023094 | None:intergenic |
CATTTGCAGCTTGCTATCAG+GGG | 0.612353 | 1.3:+51024228 | MS.gene036170:CDS |
AAGGGAACAATTGCTGGTGG+TGG | 0.621502 | 1.3:+51024276 | MS.gene036170:CDS |
GAACTTGATACCCTTATCAA+GGG | 0.630061 | 1.3:+51024258 | MS.gene036170:CDS |
ATCAAGGACTTGTGGATGTG+AGG | 0.631787 | 1.3:-51024306 | None:intergenic |
GCACGAGAAGAACGAGAAGT+GGG | 0.642443 | 1.3:-51023093 | None:intergenic |
CACCGCGGCTAACAAAGACA+AGG | 0.646788 | 1.3:+51023059 | MS.gene036170:CDS |
TGTCTGTGGATCCTACCCAC+AGG | 0.647982 | 1.3:-51024057 | None:intergenic |
ATCAAGGGAACAATTGCTGG+TGG | 0.659902 | 1.3:+51024273 | MS.gene036170:CDS |
AGGTGAAGAGGATTACACCA+AGG | 0.739394 | 1.3:+51024205 | MS.gene036170:CDS |
CGTTGCAGCGAAAACCACCG+CGG | 0.789660 | 1.3:+51023044 | MS.gene036170:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATTCTTAAGTTACAAATATT+AGG | - | chr1.3:51023761-51023780 | None:intergenic | 15.0% |
!!! | GTAAGTTTAATTTTGATTTA+AGG | + | chr1.3:51023700-51023719 | MS.gene036170:intron | 15.0% |
!!! | TTTTCTGTGTAAATTTTTTA+GGG | + | chr1.3:51023270-51023289 | MS.gene036170:intron | 15.0% |
!!! | TTTTTCTGTGTAAATTTTTT+AGG | + | chr1.3:51023269-51023288 | MS.gene036170:intron | 15.0% |
!! | ATCTGTAAATGATAATTAAC+AGG | - | chr1.3:51023949-51023968 | None:intergenic | 20.0% |
!! | ATTTGTAACTTAAGAATTTG+AGG | + | chr1.3:51023764-51023783 | MS.gene036170:intron | 20.0% |
!! | TAACAAAACAAAAATAACAG+AGG | - | chr1.3:51023988-51024007 | None:intergenic | 20.0% |
!!! | ATTAACTGTAAAATTTGCTA+TGG | + | chr1.3:51024022-51024041 | MS.gene036170:intron | 20.0% |
!!! | CGATTTTCTTTATTTTTCTA+GGG | + | chr1.3:51023158-51023177 | MS.gene036170:intron | 20.0% |
!!! | CTCTGTTCTTTAATTTTTTA+GGG | + | chr1.3:51023396-51023415 | MS.gene036170:intron | 20.0% |
!!! | TCGATTTTCTTTATTTTTCT+AGG | + | chr1.3:51023157-51023176 | MS.gene036170:intron | 20.0% |
!!! | TCTCTGTTCTTTAATTTTTT+AGG | + | chr1.3:51023395-51023414 | MS.gene036170:intron | 20.0% |
!!! | TCTTTAATTTTTTAGGGTTA+GGG | + | chr1.3:51023402-51023421 | MS.gene036170:intron | 20.0% |
!!! | TTCTTTAATTTTTTAGGGTT+AGG | + | chr1.3:51023401-51023420 | MS.gene036170:intron | 20.0% |
! | AAAATCGAAAAAACGAAGAA+AGG | - | chr1.3:51023145-51023164 | None:intergenic | 25.0% |
! | AAATCGAAAAAACGAAGAAA+GGG | - | chr1.3:51023144-51023163 | None:intergenic | 25.0% |
! | ACAAAAATAACAGAGGAAAA+TGG | - | chr1.3:51023981-51024000 | None:intergenic | 25.0% |
! | ATCTTTACACTAATAGTGTT+TGG | + | chr1.3:51023841-51023860 | MS.gene036170:intron | 25.0% |
! | CAAAAATAACAGAGGAAAAT+GGG | - | chr1.3:51023980-51023999 | None:intergenic | 25.0% |
! | TGAGATTAAATTATTGCCTT+TGG | + | chr1.3:51023903-51023922 | MS.gene036170:intron | 25.0% |
!! | TTTAGAATTAAACCCTAGAT+GGG | - | chr1.3:51023337-51023356 | None:intergenic | 25.0% |
!! | TTTTTCGTACATGATTTTTC+TGG | + | chr1.3:51023505-51023524 | MS.gene036170:intron | 25.0% |
!!! | GTGTAAATTTTTTAGGGTTA+GGG | + | chr1.3:51023276-51023295 | MS.gene036170:intron | 25.0% |
!!! | TCTTTATTTTTCTAGGGTTA+GGG | + | chr1.3:51023164-51023183 | MS.gene036170:intron | 25.0% |
!!! | TGTGTAAATTTTTTAGGGTT+AGG | + | chr1.3:51023275-51023294 | MS.gene036170:intron | 25.0% |
!!! | TTCTTTATTTTTCTAGGGTT+AGG | + | chr1.3:51023163-51023182 | MS.gene036170:intron | 25.0% |
AAAACGAAGAAAGGGAAAAA+AGG | - | chr1.3:51023136-51023155 | None:intergenic | 30.0% | |
AAACGAAGAAAGGGAAAAAA+GGG | - | chr1.3:51023135-51023154 | None:intergenic | 30.0% | |
AAATGCTAGCAAAGATTTGA+AGG | + | chr1.3:51024185-51024204 | MS.gene036170:CDS | 30.0% | |
AACATCTACATGAAATCCAA+AGG | - | chr1.3:51023922-51023941 | None:intergenic | 30.0% | |
TAGACGATAATTCTCATCTA+GGG | + | chr1.3:51023202-51023221 | MS.gene036170:intron | 30.0% | |
TTAGACGATAATTCTCATCT+AGG | + | chr1.3:51023201-51023220 | MS.gene036170:intron | 30.0% | |
TTTATAATCAACCCCCAATT+GGG | - | chr1.3:51023461-51023480 | None:intergenic | 30.0% | |
! | AGCAGAGAAGTAATTTTGTT+GGG | + | chr1.3:51023669-51023688 | MS.gene036170:intron | 30.0% |
! | TAGCAGAGAAGTAATTTTGT+TGG | + | chr1.3:51023668-51023687 | MS.gene036170:intron | 30.0% |
! | TTTGAAACAGAATTAAGCGA+TGG | + | chr1.3:51023425-51023444 | MS.gene036170:intron | 30.0% |
!! | AACTGTAAAATTTGCTATGG+TGG | + | chr1.3:51024025-51024044 | MS.gene036170:intron | 30.0% |
!! | CAGTTGTCCTTTTATTTAAC+CGG | + | chr1.3:51023868-51023887 | MS.gene036170:intron | 30.0% |
!! | CTTTAGAATTAAACCCTAGA+TGG | - | chr1.3:51023338-51023357 | None:intergenic | 30.0% |
AATCTCAAAAATCAGCTCTC+CGG | - | chr1.3:51023890-51023909 | None:intergenic | 35.0% | |
AGCAATTGTTCCCTTGATAA+GGG | - | chr1.3:51024271-51024290 | None:intergenic | 35.0% | |
CTTTATAATCAACCCCCAAT+TGG | - | chr1.3:51023462-51023481 | None:intergenic | 35.0% | |
GAACTTGATACCCTTATCAA+GGG | + | chr1.3:51024258-51024277 | MS.gene036170:CDS | 35.0% | |
! | ACAGAATTAAGCGATGGTTT+TGG | + | chr1.3:51023431-51023450 | MS.gene036170:intron | 35.0% |
! | CAGAATTAAGCGATGGTTTT+GGG | + | chr1.3:51023432-51023451 | MS.gene036170:intron | 35.0% |
! | TTTTGTTGATCAAGGACTTG+TGG | - | chr1.3:51024317-51024336 | None:intergenic | 35.0% |
!!! | TTTGGCAGTTTTGTTGATCA+AGG | - | chr1.3:51024325-51024344 | None:intergenic | 35.0% |
AAGCAAAGAGTCCAAGCTAA+TGG | + | chr1.3:51024084-51024103 | MS.gene036170:CDS | 40.0% | |
AGTGTATTTGGCATCCATTC+TGG | + | chr1.3:51024128-51024147 | MS.gene036170:CDS | 40.0% | |
AGTTTCCAGATACCCATCTA+GGG | + | chr1.3:51023322-51023341 | MS.gene036170:intron | 40.0% | |
CAGCAATTGTTCCCTTGATA+AGG | - | chr1.3:51024272-51024291 | None:intergenic | 40.0% | |
CAGCTCTCCGGTTAAATAAA+AGG | - | chr1.3:51023878-51023897 | None:intergenic | 40.0% | |
CTTATCAAGGGAACAATTGC+TGG | + | chr1.3:51024270-51024289 | MS.gene036170:CDS | 40.0% | |
GCAAAGATTTGAAGGTGAAG+AGG | + | chr1.3:51024193-51024212 | MS.gene036170:CDS | 40.0% | |
GGAACTTGATACCCTTATCA+AGG | + | chr1.3:51024257-51024276 | MS.gene036170:CDS | 40.0% | |
TAGTTTCCAGATACCCATCT+AGG | + | chr1.3:51023321-51023340 | MS.gene036170:intron | 40.0% | |
TTAAACCCTAGATGGGTATC+TGG | - | chr1.3:51023330-51023349 | None:intergenic | 40.0% | |
! | TAGGGTTAGGGTTTGAAACA+AGG | + | chr1.3:51023176-51023195 | MS.gene036170:intron | 40.0% |
!!! | ATGGTTTTGGGATACCCAAT+TGG | + | chr1.3:51023444-51023463 | MS.gene036170:intron | 40.0% |
!!! | TGGTTTTGGGATACCCAATT+GGG | + | chr1.3:51023445-51023464 | MS.gene036170:intron | 40.0% |
AGCAACAGCTGCAGTGTATT+TGG | + | chr1.3:51024116-51024135 | MS.gene036170:CDS | 45.0% | |
AGCAGTCAGATACTCCAGAA+TGG | - | chr1.3:51024145-51024164 | None:intergenic | 45.0% | |
AGGTGAAGAGGATTACACCA+AGG | + | chr1.3:51024205-51024224 | MS.gene036170:CDS | 45.0% | |
ATAGCAAGCTGCAAATGCCT+TGG | - | chr1.3:51024225-51024244 | None:intergenic | 45.0% | |
ATCAAGGACTTGTGGATGTG+AGG | - | chr1.3:51024309-51024328 | None:intergenic | 45.0% | |
ATCAAGGGAACAATTGCTGG+TGG | + | chr1.3:51024273-51024292 | MS.gene036170:CDS | 45.0% | |
ATGGCAGGAAAAGGAGGAAA+AGG | + | chr1.3:51023018-51023037 | MS.gene036170:CDS | 45.0% | |
ATGGTGGTTGTAGTTTCCTG+TGG | + | chr1.3:51024041-51024060 | MS.gene036170:intron | 45.0% | |
TGGTGGTTGTAGTTTCCTGT+GGG | + | chr1.3:51024042-51024061 | MS.gene036170:intron | 45.0% | |
TTCTTCTCGTGCTGGAATTC+AGG | + | chr1.3:51023104-51023123 | MS.gene036170:CDS | 45.0% | |
!! | CATTTGCAGCTTGCTATCAG+GGG | + | chr1.3:51024228-51024247 | MS.gene036170:CDS | 45.0% |
!! | GCATTTGCAGCTTGCTATCA+GGG | + | chr1.3:51024227-51024246 | MS.gene036170:CDS | 45.0% |
!!! | GGTTTTGGGATACCCAATTG+GGG | + | chr1.3:51023446-51023465 | MS.gene036170:intron | 45.0% |
!!! | GTTTTGGGATACCCAATTGG+GGG | + | chr1.3:51023447-51023466 | MS.gene036170:intron | 45.0% |
AAGGGAACAATTGCTGGTGG+TGG | + | chr1.3:51024276-51024295 | MS.gene036170:CDS | 50.0% | |
ACTTCTCGTTCTTCTCGTGC+TGG | + | chr1.3:51023096-51023115 | MS.gene036170:CDS | 50.0% | |
AGCACGAGAAGAACGAGAAG+TGG | - | chr1.3:51023097-51023116 | None:intergenic | 50.0% | |
CTCTTTGCTTCAGCTGTCTG+TGG | - | chr1.3:51024074-51024093 | None:intergenic | 50.0% | |
GACTGCTGAAGTTCTTGAGC+TGG | + | chr1.3:51024158-51024177 | MS.gene036170:CDS | 50.0% | |
GCACGAGAAGAACGAGAAGT+GGG | - | chr1.3:51023096-51023115 | None:intergenic | 50.0% | |
GGTTGTAGTTTCCTGTGGGT+AGG | + | chr1.3:51024046-51024065 | MS.gene036170:intron | 50.0% | |
GTCCTTGTCTTTGTTAGCCG+CGG | - | chr1.3:51023064-51023083 | None:intergenic | 50.0% | |
! | GTCCAAGCTAATGGACGTGT+CGG | + | chr1.3:51024093-51024112 | MS.gene036170:CDS | 50.0% |
!! | GGCATTTGCAGCTTGCTATC+AGG | + | chr1.3:51024226-51024245 | MS.gene036170:CDS | 50.0% |
CACCGCGGCTAACAAAGACA+AGG | + | chr1.3:51023059-51023078 | MS.gene036170:CDS | 55.0% | |
CTCCGACACGTCCATTAGCT+TGG | - | chr1.3:51024098-51024117 | None:intergenic | 55.0% | |
CTTGTCTTTGTTAGCCGCGG+TGG | - | chr1.3:51023061-51023080 | None:intergenic | 55.0% | |
GCTGAAGTTCTTGAGCTGGC+TGG | + | chr1.3:51024162-51024181 | MS.gene036170:CDS | 55.0% | |
TGTCTGTGGATCCTACCCAC+AGG | - | chr1.3:51024060-51024079 | None:intergenic | 55.0% | |
!! | GCTTGCTATCAGGGGAGATG+AGG | + | chr1.3:51024236-51024255 | MS.gene036170:CDS | 55.0% |
CGTTGCAGCGAAAACCACCG+CGG | + | chr1.3:51023044-51023063 | MS.gene036170:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.3 | gene | 51023018 | 51024350 | 51023018 | ID=MS.gene036170 |
chr1.3 | mRNA | 51023018 | 51024350 | 51023018 | ID=MS.gene036170.t1;Parent=MS.gene036170 |
chr1.3 | exon | 51023018 | 51023125 | 51023018 | ID=MS.gene036170.t1.exon1;Parent=MS.gene036170.t1 |
chr1.3 | CDS | 51023018 | 51023125 | 51023018 | ID=cds.MS.gene036170.t1;Parent=MS.gene036170.t1 |
chr1.3 | exon | 51024054 | 51024350 | 51024054 | ID=MS.gene036170.t1.exon2;Parent=MS.gene036170.t1 |
chr1.3 | CDS | 51024054 | 51024350 | 51024054 | ID=cds.MS.gene036170.t1;Parent=MS.gene036170.t1 |
Gene Sequence |
Protein sequence |