Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene065078.t1 | XP_013470241.1 | 67.2 | 1750 | 81 | 7 | 1 | 1447 | 1 | 1560 | 0.00E+00 | 1862 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene065078.t1 | A0A072VQI5 | 67.2 | 1750 | 81 | 7 | 1 | 1447 | 1 | 1560 | 0.0e+00 | 1862.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene055578 | MS.gene065078 | 0.814378 | 1.59E-51 | -1.69E-46 |
MS.gene056041 | MS.gene065078 | 0.823445 | 1.38E-53 | -1.69E-46 |
MS.gene05640 | MS.gene065078 | 0.805428 | 1.34E-49 | -1.69E-46 |
MS.gene058853 | MS.gene065078 | 0.801919 | 7.17E-49 | -1.69E-46 |
MS.gene06093 | MS.gene065078 | 0.820173 | 7.89E-53 | -1.69E-46 |
MS.gene061260 | MS.gene065078 | 0.819491 | 1.13E-52 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene036170 | MS.gene065078 | PPI |
MS.gene065078 | MS.gene39929 | PPI |
MS.gene065078 | MS.gene95566 | PPI |
MS.gene065078 | MS.gene50564 | PPI |
MS.gene065078 | MS.gene49359 | PPI |
MS.gene065078 | MS.gene027395 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene065078.t1 | MTR_1g111660 | 91.010 | 901 | 62 | 5 | 550 | 1447 | 676 | 1560 | 0.0 | 1587 |
MS.gene065078.t1 | MTR_1g111660 | 91.463 | 328 | 28 | 0 | 234 | 561 | 537 | 864 | 0.0 | 595 |
MS.gene065078.t1 | MTR_1g111660 | 95.652 | 230 | 10 | 0 | 1 | 230 | 1 | 230 | 1.48e-140 | 471 |
MS.gene065078.t1 | MTR_1g111690 | 67.123 | 219 | 66 | 4 | 561 | 778 | 170 | 383 | 1.77e-81 | 275 |
MS.gene065078.t1 | MTR_1g111690 | 62.821 | 234 | 71 | 5 | 330 | 561 | 124 | 343 | 2.06e-79 | 269 |
MS.gene065078.t1 | MTR_8g465700 | 54.545 | 110 | 35 | 1 | 617 | 726 | 179 | 273 | 9.65e-28 | 114 |
MS.gene065078.t1 | MTR_8g465700 | 53.211 | 109 | 36 | 1 | 443 | 551 | 179 | 272 | 1.09e-24 | 105 |
MS.gene065078.t1 | MTR_8g465710 | 60.000 | 65 | 23 | 1 | 714 | 778 | 3 | 64 | 6.84e-15 | 71.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene065078.t1 | AT5G55820 | 27.497 | 811 | 375 | 27 | 763 | 1447 | 1001 | 1724 | 1.80e-44 | 177 |
MS.gene065078.t1 | AT5G55820 | 27.497 | 811 | 375 | 27 | 763 | 1447 | 1033 | 1756 | 1.95e-44 | 177 |
MS.gene065078.t1 | AT5G55820 | 27.497 | 811 | 375 | 27 | 763 | 1447 | 970 | 1693 | 2.10e-44 | 177 |
MS.gene065078.t1 | AT5G55820 | 27.497 | 811 | 375 | 27 | 763 | 1447 | 970 | 1693 | 2.10e-44 | 177 |
MS.gene065078.t1 | AT5G55820 | 27.197 | 842 | 394 | 29 | 763 | 1472 | 1033 | 1787 | 3.59e-44 | 177 |
MS.gene065078.t1 | AT5G55820 | 27.441 | 809 | 374 | 27 | 763 | 1445 | 1064 | 1785 | 4.24e-44 | 176 |
MS.gene065078.t1 | AT5G55820 | 27.197 | 842 | 394 | 29 | 763 | 1472 | 1001 | 1755 | 4.97e-44 | 176 |
MS.gene065078.t1 | AT5G55820 | 27.197 | 842 | 394 | 29 | 763 | 1472 | 970 | 1724 | 5.28e-44 | 176 |
MS.gene065078.t1 | AT5G55820 | 27.485 | 815 | 374 | 28 | 763 | 1447 | 1033 | 1760 | 5.42e-44 | 176 |
MS.gene065078.t1 | AT5G55820 | 27.485 | 815 | 374 | 28 | 763 | 1447 | 970 | 1697 | 5.58e-44 | 176 |
MS.gene065078.t1 | AT5G55820 | 27.485 | 815 | 374 | 28 | 763 | 1447 | 1001 | 1728 | 6.12e-44 | 176 |
Find 324 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGACCCGAGCAAATGGTATT+TGG | 0.162766 | 1.2:-82679066 | None:intergenic |
TGACCCGAGCAAATGGTATT+TGG | 0.162766 | 1.2:-82679588 | None:intergenic |
GATGGCATAAACTTGTTATT+TGG | 0.170908 | 1.2:-82684757 | None:intergenic |
TCCAGATAAATTTGATTTAC+TGG | 0.172073 | 1.2:-82683130 | None:intergenic |
GATTATTTCTTCCCAGAAAA+TGG | 0.181241 | 1.2:+82685141 | MS.gene065078:CDS |
GCTTTCCTTGGTTATGTTAT+TGG | 0.181640 | 1.2:-82684076 | None:intergenic |
TCTGAAGCAGTTACTGAAAA+TGG | 0.194499 | 1.2:+82678943 | MS.gene065078:CDS |
TCTGAAGCAGTTACTGAAAA+TGG | 0.194499 | 1.2:+82679465 | MS.gene065078:CDS |
AAAGCCGGCGGTTCTTTATT+TGG | 0.203388 | 1.2:-82679387 | None:intergenic |
CTTCCATGCATTTCACAATA+AGG | 0.205591 | 1.2:+82685353 | MS.gene065078:CDS |
TTTCTCTTGGCACCATTTAC+TGG | 0.213908 | 1.2:-82683084 | None:intergenic |
AATATCTTTATAGGCGAAAA+TGG | 0.227994 | 1.2:+82684618 | MS.gene065078:intron |
TGCCGAGGAAATATTGTTTC+CGG | 0.239103 | 1.2:-82685166 | None:intergenic |
TTACTATCACGAACACAATT+TGG | 0.239451 | 1.2:+82677881 | MS.gene065078:CDS |
CATCTTCGGTACAAACTCTT+TGG | 0.243033 | 1.2:+82682593 | MS.gene065078:CDS |
AAAAGGAGAAAGATAGAAAA+AGG | 0.243572 | 1.2:+82683760 | MS.gene065078:CDS |
ATACTTGAGGTTCCATTTGC+AGG | 0.245367 | 1.2:-82679831 | None:intergenic |
TGGGATAAGATTTGCAAATA+AGG | 0.250905 | 1.2:+82682957 | MS.gene065078:CDS |
CTGTGGAACTTATGAAATTA+TGG | 0.259369 | 1.2:-82679155 | None:intergenic |
GTCTTTACCTAATGGACTTC+TGG | 0.261418 | 1.2:+82682480 | MS.gene065078:CDS |
AAGGGAAATTGAAGAGAAAA+AGG | 0.263230 | 1.2:+82683743 | MS.gene065078:CDS |
TGGCATCTTGAGGTTAATTC+TGG | 0.286561 | 1.2:+82682112 | MS.gene065078:CDS |
AAAACCGGCGGTTCTTTATC+TGG | 0.291291 | 1.2:-82678865 | None:intergenic |
GACCCGAGCAAATGGTATTT+GGG | 0.295473 | 1.2:-82679065 | None:intergenic |
GACCCGAGCAAATGGTATTT+GGG | 0.295473 | 1.2:-82679587 | None:intergenic |
TCCAGTAAATCAAATTTATC+TGG | 0.309989 | 1.2:+82683129 | MS.gene065078:CDS |
TCATCATCATCTGATCTATA+TGG | 0.312866 | 1.2:-82684718 | None:intergenic |
ACCATTTGCTCGGGTCAAAA+TGG | 0.315119 | 1.2:+82679072 | MS.gene065078:CDS |
ACCATTTGCTCGGGTCAAAA+TGG | 0.315119 | 1.2:+82679594 | MS.gene065078:CDS |
GATCCTCCAGAATTGGATTC+AGG | 0.318727 | 1.2:+82678085 | MS.gene065078:CDS |
TCTCCTTCTCCTTGGCTGTT+GGG | 0.320549 | 1.2:-82678364 | None:intergenic |
CTTTATCAGTCTTTACCTAA+TGG | 0.321316 | 1.2:+82682472 | MS.gene065078:CDS |
TCCAGTAGGTCAAAGTTATC+TGG | 0.322998 | 1.2:+82683042 | MS.gene065078:CDS |
AATTCGAATTTCGGCAGTTC+AGG | 0.323378 | 1.2:+82682625 | MS.gene065078:CDS |
TGATAACGAACCTTCTTGTT+TGG | 0.325700 | 1.2:+82678666 | MS.gene065078:CDS |
TTCCATGCATTTCACAATAA+GGG | 0.327299 | 1.2:+82685354 | MS.gene065078:CDS |
GCTATTTATTCCATCCCTAT+TGG | 0.328135 | 1.2:-82678809 | None:intergenic |
AGTATGAAAGATCCAGTAAA+TGG | 0.329638 | 1.2:+82683072 | MS.gene065078:CDS |
CTGTTAGCAGAAACTTATAT+TGG | 0.331558 | 1.2:+82681985 | MS.gene065078:intron |
TTCTCCTTCTCCTTGGCTGT+TGG | 0.335118 | 1.2:-82678365 | None:intergenic |
GGGATAAGATTTGCAAATAA+GGG | 0.336599 | 1.2:+82682958 | MS.gene065078:CDS |
GATAACGAACCTTCTTGTTT+GGG | 0.337556 | 1.2:+82678667 | MS.gene065078:CDS |
CTTTATCTGGTGACATTCTC+CGG | 0.338253 | 1.2:-82678852 | None:intergenic |
GTAAACCGACCATTACAATT+TGG | 0.340754 | 1.2:-82682571 | None:intergenic |
AAACTGAAGGGATTTGCTTC+TGG | 0.342233 | 1.2:-82682043 | None:intergenic |
CTTTATTTGGTGACATTCTC+CGG | 0.344696 | 1.2:-82679374 | None:intergenic |
GCCGAGGAAATATTGTTTCC+GGG | 0.345804 | 1.2:-82685165 | None:intergenic |
ATACTCGAGGTTCCACTTGC+AGG | 0.347380 | 1.2:-82679309 | None:intergenic |
AAGAATCTGCCAGAACTTCC+TGG | 0.347539 | 1.2:-82678918 | None:intergenic |
CGATGACATACATGAAGTTT+TGG | 0.350305 | 1.2:+82679431 | MS.gene065078:CDS |
CATTAGGTAAAGACTGATAA+AGG | 0.353331 | 1.2:-82682471 | None:intergenic |
AAAGAAGGAGGAAGAAGAAA+TGG | 0.360491 | 1.2:+82683701 | MS.gene065078:CDS |
TGATGACACAAATGTTGATT+TGG | 0.361058 | 1.2:+82679554 | MS.gene065078:CDS |
CCATTTCCATTCTGCATGTC+AGG | 0.361076 | 1.2:-82682937 | None:intergenic |
CTGAAATTTCTCCTTCTCCT+TGG | 0.361296 | 1.2:-82678372 | None:intergenic |
GATCGATTTAATTCGAATTT+CGG | 0.363714 | 1.2:+82682616 | MS.gene065078:CDS |
GGGAGGATGTTTCCGTCTTA+AGG | 0.367799 | 1.2:+82678722 | MS.gene065078:CDS |
TCAACATTTGGCACATGATC+AGG | 0.368921 | 1.2:+82679887 | MS.gene065078:CDS |
TAAAGACCCACCGTCTATAC+TGG | 0.369699 | 1.2:-82678491 | None:intergenic |
ACTTGCAGGCCTTTGGTCAA+TGG | 0.373297 | 1.2:-82679295 | None:intergenic |
CCAAGCTTAAATCCTTGATA+TGG | 0.374133 | 1.2:-82678327 | None:intergenic |
TGTCATTGAAGTTCAACATT+TGG | 0.374241 | 1.2:+82679875 | MS.gene065078:CDS |
CGATGACATCCAGGAAGTTC+TGG | 0.374712 | 1.2:+82678909 | MS.gene065078:CDS |
TCCAGATAACTTTGACCTAC+TGG | 0.374996 | 1.2:-82683043 | None:intergenic |
ATTTGCAGGCCTTTGGTCAA+TGG | 0.375780 | 1.2:-82679817 | None:intergenic |
ATGGCCCCTGAATCCAATTC+TGG | 0.376414 | 1.2:-82678091 | None:intergenic |
TGGAATAAAGGAAGTAAGAT+TGG | 0.380644 | 1.2:-82683220 | None:intergenic |
GAAAACAAGAGTGTAGTAAA+TGG | 0.381490 | 1.2:+82682985 | MS.gene065078:CDS |
CCTGACATGCAGAATGGAAA+TGG | 0.382291 | 1.2:+82682937 | MS.gene065078:CDS |
TTGCTGCACTAATGGAATAA+AGG | 0.383319 | 1.2:-82683232 | None:intergenic |
AAATGTTGATTTGGCACAAC+AGG | 0.385403 | 1.2:+82679563 | MS.gene065078:CDS |
ATCTTCGGTACAAACTCTTT+GGG | 0.385786 | 1.2:+82682594 | MS.gene065078:CDS |
AGGTTCCATTTGCAGGCCTT+TGG | 0.389072 | 1.2:-82679824 | None:intergenic |
TGCTCGAGACGAAATGGAAT+TGG | 0.390534 | 1.2:+82682333 | MS.gene065078:CDS |
AATCATCGAGCATGCTCGTC+AGG | 0.391925 | 1.2:+82677233 | MS.gene065078:CDS |
CGCAGGTGCTGCTCAGTAAC+GGG | 0.392807 | 1.2:+82679106 | MS.gene065078:CDS |
GCACATTATCTGTTTGCATA+AGG | 0.396458 | 1.2:-82682300 | None:intergenic |
CATGATCAGGCGGATGATAT+AGG | 0.396466 | 1.2:+82679900 | MS.gene065078:CDS |
ATCACAGACACAGCGAAATC+AGG | 0.397100 | 1.2:-82678751 | None:intergenic |
TTACGAGGTTTGAATTTGAT+TGG | 0.398126 | 1.2:+82682244 | MS.gene065078:CDS |
TTCAAGTGATCCTCCAGAAT+TGG | 0.399473 | 1.2:+82678078 | MS.gene065078:CDS |
TGATGACACGAATGTTGATT+TGG | 0.402058 | 1.2:+82679032 | MS.gene065078:CDS |
GACGGTTTGTCTGTTTCTCC+AGG | 0.403774 | 1.2:+82682220 | MS.gene065078:CDS |
CTCGTCAGGAATCTCGTCTA+TGG | 0.403996 | 1.2:+82677247 | MS.gene065078:CDS |
TACTGATTCAGAGTTCCTTT+TGG | 0.404488 | 1.2:-82683010 | None:intergenic |
AGGTTCCACTTGCAGGCCTT+TGG | 0.407847 | 1.2:-82679302 | None:intergenic |
AGCTCAGAATTTAACTTTGA+CGG | 0.407892 | 1.2:+82682889 | MS.gene065078:CDS |
AATAGCCTTGATTTGAAAGA+AGG | 0.410319 | 1.2:+82678826 | MS.gene065078:CDS |
TAATGGTCGGTTTACATCTT+CGG | 0.411579 | 1.2:+82682579 | MS.gene065078:CDS |
AATGGACTTCTGGAGGGATA+TGG | 0.411763 | 1.2:+82682490 | MS.gene065078:CDS |
GATTTGCTTCTGGCAACATA+AGG | 0.413586 | 1.2:-82682033 | None:intergenic |
TCACTAATGCAGGGTAGCTC+TGG | 0.414567 | 1.2:-82682667 | None:intergenic |
CTACTGCCAACACTAAGGTT+AGG | 0.414720 | 1.2:+82678701 | MS.gene065078:CDS |
ATCAAAATCAAGATGAACTT+TGG | 0.415970 | 1.2:-82678635 | None:intergenic |
ATGATGGCGAAGAGACCAAT+AGG | 0.416093 | 1.2:+82678794 | MS.gene065078:CDS |
ATTGCTGGTACATTCCAAAA+AGG | 0.418242 | 1.2:+82682712 | MS.gene065078:CDS |
TTCTGGAGGGATATGGTCTA+AGG | 0.425267 | 1.2:+82682497 | MS.gene065078:CDS |
GATTGGACTGCTGCAGCTAC+AGG | 0.426309 | 1.2:+82678277 | MS.gene065078:CDS |
ATTCCGTTGAGGATGAGTTT+AGG | 0.429419 | 1.2:-82677285 | None:intergenic |
TAAAGCAGATGTGGCTGAAA+AGG | 0.431263 | 1.2:+82678534 | MS.gene065078:CDS |
CCCATCTCCTGACAACCGTT+TGG | 0.433562 | 1.2:-82678242 | None:intergenic |
GTGAGCGAATGTGCCAATAA+AGG | 0.435348 | 1.2:+82684120 | MS.gene065078:CDS |
TTTAACGCTAGGTTCTCATC+TGG | 0.437920 | 1.2:+82679522 | MS.gene065078:CDS |
ATGCACTGCTCGAGACGAAA+TGG | 0.437988 | 1.2:+82682327 | MS.gene065078:CDS |
GGCATCCTTCTTTCAAATCA+AGG | 0.438272 | 1.2:-82678831 | None:intergenic |
TACTGATTCGGAGTTTCTCT+TGG | 0.438393 | 1.2:-82683097 | None:intergenic |
GTATCTTCCATCACATCTGT+TGG | 0.446459 | 1.2:-82679945 | None:intergenic |
GCTAGGCTATGCAACTTGTA+TGG | 0.447833 | 1.2:-82682445 | None:intergenic |
ATGGGGATAATGCTGGTGAT+TGG | 0.451029 | 1.2:+82678260 | MS.gene065078:CDS |
TATCCCTCCAGAAGTCCATT+AGG | 0.453030 | 1.2:-82682487 | None:intergenic |
TCCAAACGGTTGTCAGGAGA+TGG | 0.454684 | 1.2:+82678241 | MS.gene065078:CDS |
GCTCAGAATTTAACTTTGAC+GGG | 0.456665 | 1.2:+82682890 | MS.gene065078:CDS |
TCTTCCTGACTCTACACTCT+TGG | 0.458280 | 1.2:+82679776 | MS.gene065078:CDS |
AAAGCATCCAAACGGTTGTC+AGG | 0.460177 | 1.2:+82678235 | MS.gene065078:CDS |
ACTTCCCGTCCTGCGAATGA+TGG | 0.460449 | 1.2:+82682520 | MS.gene065078:CDS |
ATAGTACCAACTCAGGAATC+AGG | 0.462592 | 1.2:+82685319 | MS.gene065078:intron |
CAATTTGGAATTCCTTTCAC+TGG | 0.462751 | 1.2:+82677896 | MS.gene065078:CDS |
TATCTGATTCTGAGGTGAAA+TGG | 0.464378 | 1.2:-82678110 | None:intergenic |
TATCTTCCATCACATCTGTT+GGG | 0.464471 | 1.2:-82679944 | None:intergenic |
AAATTCAAACCTCGTAATCC+TGG | 0.465018 | 1.2:-82682238 | None:intergenic |
CTTATCATAACAGCTTTCCT+TGG | 0.465240 | 1.2:-82684088 | None:intergenic |
GATTGCTCGGTCAACAATGC+TGG | 0.467716 | 1.2:+82678049 | MS.gene065078:CDS |
GAAAGCAGGAAAATTATAGA+AGG | 0.468631 | 1.2:+82683955 | MS.gene065078:CDS |
GGTTTGAATTTGATTGGTAC+AGG | 0.471938 | 1.2:+82682250 | MS.gene065078:CDS |
ATGCAGTCTATACAGCAATC+TGG | 0.472277 | 1.2:+82677925 | MS.gene065078:CDS |
GAAAATGTTGATGAGATTGC+TGG | 0.476098 | 1.2:+82682697 | MS.gene065078:CDS |
TCCTGACTCTACACTCTTGG+CGG | 0.479500 | 1.2:+82679779 | MS.gene065078:CDS |
GTGTCACAAACTTTAACGCT+AGG | 0.480607 | 1.2:+82678989 | MS.gene065078:CDS |
TGAGTGAGCCATGGAGGAGG+AGG | 0.481555 | 1.2:-82677309 | None:intergenic |
ACTTCATTGCGTAAACCAAC+AGG | 0.484728 | 1.2:-82677974 | None:intergenic |
ATTTGCTTCTGGCAACATAA+GGG | 0.485485 | 1.2:-82682032 | None:intergenic |
TGAGGATGAGTTTAGGAAGA+AGG | 0.486655 | 1.2:-82677278 | None:intergenic |
TCTTCCTGACTCTACACTCT+TGG | 0.487334 | 1.2:+82679254 | MS.gene065078:CDS |
GGCCCCAAATACCATTTGCT+CGG | 0.489892 | 1.2:+82679062 | MS.gene065078:CDS |
ATTGACCAAAGGCCTGCAAA+TGG | 0.491085 | 1.2:+82679819 | MS.gene065078:CDS |
TTCAGTGAATTCTGCAGAGA+AGG | 0.491179 | 1.2:+82678390 | MS.gene065078:CDS |
TGAACTTCAATGACAGCCTC+AGG | 0.492780 | 1.2:-82679867 | None:intergenic |
ATGAGTCTTCCTAGTAACTC+TGG | 0.495150 | 1.2:+82682361 | MS.gene065078:CDS |
AATGATGTTCAGTATCCTGT+TGG | 0.496407 | 1.2:+82677959 | MS.gene065078:CDS |
TTCAATGGTTCTGACAAAAC+CGG | 0.498195 | 1.2:-82678880 | None:intergenic |
CTGACATGCAGAATGGAAAT+GGG | 0.498330 | 1.2:+82682938 | MS.gene065078:CDS |
GGCCCCAAATACCATTTGCT+CGG | 0.498943 | 1.2:+82679584 | MS.gene065078:CDS |
CCGCAGGTGCTGCTCAGTAA+CGG | 0.501808 | 1.2:+82679105 | MS.gene065078:CDS |
CTTGGTTCTATCTGATTCTG+AGG | 0.501944 | 1.2:-82678118 | None:intergenic |
TACTGCCAACACTAAGGTTA+GGG | 0.502997 | 1.2:+82678702 | MS.gene065078:CDS |
TGAGAATTCAGTATCACCTC+CGG | 0.504133 | 1.2:-82682197 | None:intergenic |
CTTCCCGTCCTGCGAATGAT+GGG | 0.505343 | 1.2:+82682521 | MS.gene065078:CDS |
TCACAGACACAGCGAAATCA+GGG | 0.506326 | 1.2:-82678750 | None:intergenic |
TAGCAGAAACTTATATTGGA+TGG | 0.507210 | 1.2:+82681989 | MS.gene065078:intron |
TTCTTCCCAGAAAATGGACC+CGG | 0.507214 | 1.2:+82685147 | MS.gene065078:CDS |
AACTTTGCTAGTGACACTAC+TGG | 0.508099 | 1.2:-82678163 | None:intergenic |
ATAACAAGTTTATGCCATCA+TGG | 0.508757 | 1.2:+82684761 | MS.gene065078:CDS |
AAGGAGAACATTGCTGAAGT+TGG | 0.509222 | 1.2:+82678409 | MS.gene065078:CDS |
GTGTCACAAACTTTAACGCT+AGG | 0.509624 | 1.2:+82679511 | MS.gene065078:CDS |
GATTGCCGACCAAATTGTAA+TGG | 0.510039 | 1.2:+82682562 | MS.gene065078:CDS |
GTATAATCTCCAGAGTTACT+AGG | 0.510158 | 1.2:-82682370 | None:intergenic |
ATTGTCTTCTTTGATACTTG+AGG | 0.510805 | 1.2:-82679844 | None:intergenic |
AATTTGGTCGGCAATCAGAA+AGG | 0.512897 | 1.2:-82682555 | None:intergenic |
GTGACTAGTCAAACAAAAGA+AGG | 0.512898 | 1.2:+82678454 | MS.gene065078:CDS |
TCTTGTAAAACTGATGTTGA+AGG | 0.513684 | 1.2:-82682835 | None:intergenic |
GTGTAGTAAATGGTGCCAAA+AGG | 0.515561 | 1.2:+82682995 | MS.gene065078:CDS |
GACATGAAGCTGCAAGAGCA+TGG | 0.516786 | 1.2:+82683795 | MS.gene065078:CDS |
ATCCTCCAGAATTGGATTCA+GGG | 0.516829 | 1.2:+82678086 | MS.gene065078:CDS |
CCAAACGGTTGTCAGGAGAT+GGG | 0.516842 | 1.2:+82678242 | MS.gene065078:CDS |
ACCCGAGCAAATGGTATTTG+GGG | 0.517000 | 1.2:-82679064 | None:intergenic |
ACCCGAGCAAATGGTATTTG+GGG | 0.517000 | 1.2:-82679586 | None:intergenic |
TCCGCCAAGAGTGTAGAGTC+AGG | 0.519393 | 1.2:-82679780 | None:intergenic |
GGGAAGAAATAATCATTGAC+AGG | 0.519799 | 1.2:-82685132 | None:intergenic |
TTGATTTGAAAGAAGGATGC+CGG | 0.521609 | 1.2:+82678833 | MS.gene065078:CDS |
TCAATGACAATGACAGCCTC+AGG | 0.522056 | 1.2:-82679345 | None:intergenic |
GCCCCAAATACCATTTGCTC+GGG | 0.522937 | 1.2:+82679063 | MS.gene065078:CDS |
GAATGTTGATTTGGCACGGC+AGG | 0.523686 | 1.2:+82679041 | MS.gene065078:CDS |
CTTGTAAAACTGATGTTGAA+GGG | 0.523957 | 1.2:-82682834 | None:intergenic |
ACTCCCATCATTCGCAGGAC+GGG | 0.525252 | 1.2:-82682524 | None:intergenic |
ATAAGGAACCCTTCGAACTC+TGG | 0.525981 | 1.2:-82682283 | None:intergenic |
GAGTGAGTGAGCCATGGAGG+AGG | 0.529315 | 1.2:-82677312 | None:intergenic |
CGGCAATCAGAAAGGGACCT+TGG | 0.529723 | 1.2:-82682547 | None:intergenic |
GCCCCAAATACCATTTGCTC+GGG | 0.529969 | 1.2:+82679585 | MS.gene065078:CDS |
TCTGCCAAGAGTGTAGAGTC+AGG | 0.530112 | 1.2:-82679258 | None:intergenic |
CCGCAGGCGCTGCTCAGTAA+CGG | 0.530537 | 1.2:+82679627 | MS.gene065078:CDS |
CCATATCAAGGATTTAAGCT+TGG | 0.530852 | 1.2:+82678327 | MS.gene065078:CDS |
ACATAAGGGTGTCTGAGCTT+CGG | 0.531383 | 1.2:-82682018 | None:intergenic |
TGGAAACTCTCAGAGACTCT+TGG | 0.532583 | 1.2:-82678136 | None:intergenic |
TGCATTAGCTAGTGGACGTA+AGG | 0.533228 | 1.2:+82682858 | MS.gene065078:CDS |
TGAGTCAATACTAAAACTGA+AGG | 0.533610 | 1.2:-82682056 | None:intergenic |
GTGAAGAAGTCCATGAAAGC+AGG | 0.535567 | 1.2:+82683941 | MS.gene065078:CDS |
GCCGACCAAATTGTAATGGT+CGG | 0.536408 | 1.2:+82682566 | MS.gene065078:CDS |
ATTTGGTCGGCAATCAGAAA+GGG | 0.536631 | 1.2:-82682554 | None:intergenic |
ACCGACCATTACAATTTGGT+CGG | 0.539596 | 1.2:-82682567 | None:intergenic |
GAATAACAAGGTCAATTACC+AGG | 0.539826 | 1.2:+82682749 | MS.gene065078:CDS |
TAATAGCCCAACAGATGTGA+TGG | 0.541873 | 1.2:+82679938 | MS.gene065078:CDS |
GAAGTTACTCGATGACATCC+AGG | 0.542475 | 1.2:+82678900 | MS.gene065078:CDS |
AAGAAACCTGACATGCAGAA+TGG | 0.545089 | 1.2:+82682931 | MS.gene065078:CDS |
ATGACGGTGATACGGGGCGC+AGG | 0.545137 | 1.2:+82678011 | MS.gene065078:CDS |
AAGACTGATAAAGGTTTGCT+AGG | 0.546526 | 1.2:-82682462 | None:intergenic |
ATTTCGTCTCGAGCAGTGCA+TGG | 0.550577 | 1.2:-82682325 | None:intergenic |
ATCCCTTATTGTGAAATGCA+TGG | 0.550967 | 1.2:-82685356 | None:intergenic |
TAACAAGTTTATGCCATCAT+GGG | 0.551395 | 1.2:+82684762 | MS.gene065078:CDS |
AGTTTATGCCATCATGGGCA+AGG | 0.551787 | 1.2:+82684767 | MS.gene065078:CDS |
AAACTTATATTGGATGGAAG+AGG | 0.551998 | 1.2:+82681995 | MS.gene065078:CDS |
AAGGTCAAGGTCGAGGCAGA+AGG | 0.553511 | 1.2:+82678189 | MS.gene065078:CDS |
ATATGGTCTTCTTGTAGAGA+CGG | 0.553596 | 1.2:-82678310 | None:intergenic |
GAGGCTGTCATTGTCATTGA+AGG | 0.556263 | 1.2:+82679348 | MS.gene065078:CDS |
ACGGAATTCCTCCTCCTCCA+TGG | 0.557225 | 1.2:+82677301 | MS.gene065078:CDS |
TGGACGAGAAGGTGGGGTCA+TGG | 0.557437 | 1.2:+82682092 | MS.gene065078:CDS |
ATTGTATTCTTTGATACTCG+AGG | 0.557535 | 1.2:-82679322 | None:intergenic |
AGACATGAAGTTGTCTCTGA+AGG | 0.558312 | 1.2:+82677857 | MS.gene065078:CDS |
CCGTTACTGAGCAGCGCCTG+CGG | 0.558915 | 1.2:-82679627 | None:intergenic |
TCAACATTTGTGTCATCAGT+AGG | 0.559577 | 1.2:-82679549 | None:intergenic |
GTTCAGCATGGACGAGAAGG+TGG | 0.560570 | 1.2:+82682084 | MS.gene065078:CDS |
AGATGTGGCTGAAAAGGACT+TGG | 0.560585 | 1.2:+82678540 | MS.gene065078:CDS |
TCATTGTCATTGAAGGATGC+CGG | 0.561205 | 1.2:+82679355 | MS.gene065078:CDS |
ATCCTCCCTAACCTTAGTGT+TGG | 0.562026 | 1.2:-82678707 | None:intergenic |
CTACGTCCTGATTCCTGAGT+TGG | 0.562596 | 1.2:-82685325 | None:intergenic |
GAAGAGGAAGGAGTTCATGA+TGG | 0.569667 | 1.2:+82683665 | MS.gene065078:CDS |
ACAACAAACCTTGCCCATGA+TGG | 0.570513 | 1.2:-82684775 | None:intergenic |
GTCACCAAATAAAGAACCGC+CGG | 0.570920 | 1.2:+82679383 | MS.gene065078:CDS |
AGTTAAAGTGAGAAAAGAAG+AGG | 0.571335 | 1.2:+82679998 | MS.gene065078:CDS |
GAGGTTCAGCATGGACGAGA+AGG | 0.571644 | 1.2:+82682081 | MS.gene065078:CDS |
TGATGGCGAAGAGACCAATA+GGG | 0.572157 | 1.2:+82678795 | MS.gene065078:CDS |
AAATGGTGACTTATTGCCGC+AGG | 0.572570 | 1.2:+82679611 | MS.gene065078:CDS |
TCGTCAGGAATCTCGTCTAT+GGG | 0.574025 | 1.2:+82677248 | MS.gene065078:CDS |
ATGTCATCGAGTAACTTCAA+TGG | 0.574622 | 1.2:-82678895 | None:intergenic |
CTGCGAATGATGGGAGTCCA+AGG | 0.576071 | 1.2:+82682530 | MS.gene065078:CDS |
GCTGAATCGCTGATGGTCAA+AGG | 0.576992 | 1.2:-82684054 | None:intergenic |
ATTATTAGTAAAACTATCTG+TGG | 0.577018 | 1.2:-82679694 | None:intergenic |
ATGTCATCGAGTAACTTCAA+TGG | 0.577105 | 1.2:-82679417 | None:intergenic |
ACATGAAGCTGCAAGAGCAT+GGG | 0.577354 | 1.2:+82683796 | MS.gene065078:CDS |
TTACAAGATGCATTAGCTAG+TGG | 0.577597 | 1.2:+82682850 | MS.gene065078:CDS |
AAATGGTGACTTATTGCCGC+AGG | 0.577868 | 1.2:+82679089 | MS.gene065078:CDS |
ATAACGAACCTTCTTGTTTG+GGG | 0.578757 | 1.2:+82678668 | MS.gene065078:CDS |
GGAGTAGAAGAATAGCATGA+TGG | 0.578879 | 1.2:-82682424 | None:intergenic |
TTCAGCATGGACGAGAAGGT+GGG | 0.579463 | 1.2:+82682085 | MS.gene065078:CDS |
GACTCCCATCATTCGCAGGA+CGG | 0.579832 | 1.2:-82682525 | None:intergenic |
CTTGGACTCCCATCATTCGC+AGG | 0.580161 | 1.2:-82682529 | None:intergenic |
AAGCTTTACCAGAGTTCGAA+GGG | 0.580210 | 1.2:+82682275 | MS.gene065078:CDS |
CAACCCAACAGCCAAGGAGA+AGG | 0.582039 | 1.2:+82678361 | MS.gene065078:CDS |
CTGCATTGTTGACCAGTGAA+AGG | 0.582249 | 1.2:-82677908 | None:intergenic |
GAAGCTTTACCAGAGTTCGA+AGG | 0.582405 | 1.2:+82682274 | MS.gene065078:CDS |
GCCTCAGCTTTAATCAGAGA+AGG | 0.582924 | 1.2:-82683603 | None:intergenic |
AAGATTTGCAAATAAGGGGA+AGG | 0.585481 | 1.2:+82682963 | MS.gene065078:CDS |
ACTCACTACTGCCAACACTA+AGG | 0.586002 | 1.2:+82678696 | MS.gene065078:CDS |
CTAGTGACACTACTGGGTCA+TGG | 0.586152 | 1.2:-82678156 | None:intergenic |
ACACGAATGTTGATTTGGCA+CGG | 0.586444 | 1.2:+82679037 | MS.gene065078:CDS |
ATTATACATTAAAGCAGATG+TGG | 0.587518 | 1.2:+82678525 | MS.gene065078:CDS |
GAGAATTCAGTATCACCTCC+GGG | 0.587873 | 1.2:-82682196 | None:intergenic |
GGCGAAGAGACCAATAGGGA+TGG | 0.588200 | 1.2:+82678799 | MS.gene065078:CDS |
AATATCAGCTAGTAGTCCCC+TGG | 0.588315 | 1.2:-82682767 | None:intergenic |
TTTACCTAATGGACTTCTGG+AGG | 0.588500 | 1.2:+82682483 | MS.gene065078:CDS |
ACCCGGAAACAATATTTCCT+CGG | 0.589237 | 1.2:+82685164 | MS.gene065078:CDS |
ATTATTAGTAAAACTATCTG+TGG | 0.589436 | 1.2:-82679172 | None:intergenic |
GGATAAGATTTGCAAATAAG+GGG | 0.589492 | 1.2:+82682959 | MS.gene065078:CDS |
TTCAATGGTTCTGACAAAGC+CGG | 0.590356 | 1.2:-82679402 | None:intergenic |
TTCTGTTATAGTACCAACTC+AGG | 0.592503 | 1.2:+82685312 | MS.gene065078:intron |
GTCACCAGATAAAGAACCGC+CGG | 0.593259 | 1.2:+82678861 | MS.gene065078:CDS |
TCTACAAGAAGACCATATCA+AGG | 0.594214 | 1.2:+82678315 | MS.gene065078:CDS |
GCCTTCTCTGATTAAAGCTG+AGG | 0.594967 | 1.2:+82683602 | MS.gene065078:CDS |
GTCGAGGCAGAAGGCTCTCG+AGG | 0.595838 | 1.2:+82678198 | MS.gene065078:CDS |
TCAACATTCGTGTCATCAGT+AGG | 0.595995 | 1.2:-82679027 | None:intergenic |
AGTTGCAAAGGTCAAGGTCG+AGG | 0.597929 | 1.2:+82678182 | MS.gene065078:CDS |
TTGATCTCTTCCAGTATAGA+CGG | 0.598405 | 1.2:+82678481 | MS.gene065078:CDS |
CCGTTACTGAGCAGCACCTG+CGG | 0.598897 | 1.2:-82679105 | None:intergenic |
ACTTTGCTAGTGACACTACT+GGG | 0.599022 | 1.2:-82678162 | None:intergenic |
ACAGTGCAAAAGCATCCAAA+CGG | 0.601917 | 1.2:+82678227 | MS.gene065078:CDS |
GCATTGTTGACCGAGCAATC+CGG | 0.602170 | 1.2:-82678046 | None:intergenic |
ATCAGGGGAAAGCCTTAAGA+CGG | 0.602213 | 1.2:-82678734 | None:intergenic |
TCCTCCAGAATTGGATTCAG+GGG | 0.604071 | 1.2:+82678087 | MS.gene065078:CDS |
TCAGCATGGACGAGAAGGTG+GGG | 0.605828 | 1.2:+82682086 | MS.gene065078:CDS |
CAAACGGTTGTCAGGAGATG+GGG | 0.606055 | 1.2:+82678243 | MS.gene065078:CDS |
GTTATTGGCTGAATCGCTGA+TGG | 0.606293 | 1.2:-82684061 | None:intergenic |
ATCTCTTCCAGTATAGACGG+TGG | 0.607784 | 1.2:+82678484 | MS.gene065078:CDS |
TCAGGAGATGGGGATAATGC+TGG | 0.608626 | 1.2:+82678253 | MS.gene065078:CDS |
AGTCTTGACCCCAAACAAGA+AGG | 0.608674 | 1.2:-82678676 | None:intergenic |
TAGCAAAGTTGCAAAGGTCA+AGG | 0.609221 | 1.2:+82678176 | MS.gene065078:CDS |
GAGTTTCAACCCAACAGCCA+AGG | 0.609684 | 1.2:+82678355 | MS.gene065078:CDS |
AAGCAAATGAGCAAAAGAAG+AGG | 0.610436 | 1.2:+82683649 | MS.gene065078:CDS |
TTACCTAATGGACTTCTGGA+GGG | 0.611690 | 1.2:+82682484 | MS.gene065078:CDS |
TTTAATGTCAGCATTACGCT+TGG | 0.613802 | 1.2:-82683628 | None:intergenic |
GGATCTGAGTGAGTGAGCCA+TGG | 0.615575 | 1.2:-82677318 | None:intergenic |
AAATGAGCAAAAGAAGAGGA+AGG | 0.616103 | 1.2:+82683653 | MS.gene065078:CDS |
GGTGGGGTCATGGCATCTTG+AGG | 0.616697 | 1.2:+82682102 | MS.gene065078:CDS |
TGTCACTAGCAAAGTTGCAA+AGG | 0.618308 | 1.2:+82678170 | MS.gene065078:CDS |
TCTGGAGATTATACATCACT+TGG | 0.619576 | 1.2:+82682379 | MS.gene065078:CDS |
CATGCTCTCAGCATAAGAGA+AGG | 0.620047 | 1.2:+82679205 | MS.gene065078:CDS |
CATGCTCTCAGCATAAGAGA+AGG | 0.620047 | 1.2:+82679727 | MS.gene065078:CDS |
CTTCCTAAACTCATCCTCAA+CGG | 0.622905 | 1.2:+82677282 | MS.gene065078:CDS |
CGAATGTGCCAATAAAGGAA+AGG | 0.623218 | 1.2:+82684125 | MS.gene065078:CDS |
TCTGTGCTCGGCATTATCAG+TGG | 0.626280 | 1.2:-82678596 | None:intergenic |
TAGTTGATTCCATTGACCAA+AGG | 0.627809 | 1.2:+82679286 | MS.gene065078:CDS |
TAGTTGATTCCATTGACCAA+AGG | 0.627809 | 1.2:+82679808 | MS.gene065078:CDS |
GCCCCTGAATCCAATTCTGG+AGG | 0.629704 | 1.2:-82678088 | None:intergenic |
AATAACAAGGTCAATTACCA+GGG | 0.629855 | 1.2:+82682750 | MS.gene065078:CDS |
TGACTCAATGAGGTTCAGCA+TGG | 0.631418 | 1.2:+82682072 | MS.gene065078:CDS |
TCAAGTAGAAGAATCAATCC+CGG | 0.632827 | 1.2:+82682178 | MS.gene065078:CDS |
ATTGACCAAAGGCCTGCAAG+TGG | 0.633998 | 1.2:+82679297 | MS.gene065078:CDS |
GGTGATACTGAATTCTCAGA+CGG | 0.634543 | 1.2:+82682202 | MS.gene065078:CDS |
CTCTCAGCATAAGAGAAGGA+AGG | 0.636251 | 1.2:+82679209 | MS.gene065078:CDS |
CTCTCAGCATAAGAGAAGGA+AGG | 0.636251 | 1.2:+82679731 | MS.gene065078:CDS |
TCTGTTTCTCCAGGATTACG+AGG | 0.636858 | 1.2:+82682229 | MS.gene065078:CDS |
TGCCAACACTAAGGTTAGGG+AGG | 0.636910 | 1.2:+82678705 | MS.gene065078:CDS |
TCTCTTCCAGTATAGACGGT+GGG | 0.637069 | 1.2:+82678485 | MS.gene065078:CDS |
TGACTAGTCAAACAAAAGAA+GGG | 0.638360 | 1.2:+82678455 | MS.gene065078:CDS |
AGTTGCAGCAGATCTGTGCT+CGG | 0.638703 | 1.2:-82678608 | None:intergenic |
AGATGTGATGGAAGATACCA+AGG | 0.643125 | 1.2:+82679950 | MS.gene065078:CDS |
ACATTTGGCACATGATCAGG+CGG | 0.645866 | 1.2:+82679890 | MS.gene065078:CDS |
TTGGTGCTTCTAGAAATACA+AGG | 0.646683 | 1.2:+82678428 | MS.gene065078:CDS |
CTGCAAGAGAATAATAGACA+AGG | 0.647365 | 1.2:+82684003 | MS.gene065078:CDS |
ACTTCGTTCAGATCTTCGAT+CGG | 0.648458 | 1.2:+82677202 | MS.gene065078:CDS |
CTCACTCACTCAGATCCCAA+AGG | 0.649468 | 1.2:+82677324 | MS.gene065078:CDS |
TCTGAGTGAGTGAGCCATGG+AGG | 0.649704 | 1.2:-82677315 | None:intergenic |
TTCAGCCAATAACATAACCA+AGG | 0.650099 | 1.2:+82684071 | MS.gene065078:CDS |
GAGTCAATACTAAAACTGAA+GGG | 0.653080 | 1.2:-82682055 | None:intergenic |
AATGGTTCTGACAAAGCCGG+CGG | 0.664360 | 1.2:-82679399 | None:intergenic |
GAGGAGGAGGAATTCCGTTG+AGG | 0.670450 | 1.2:-82677296 | None:intergenic |
AATGGTTCTGACAAAACCGG+CGG | 0.673638 | 1.2:-82678877 | None:intergenic |
TATCAAAGAATACAATCCTG+AGG | 0.675300 | 1.2:+82679329 | MS.gene065078:CDS |
CAGTACGTAAAAGATCCAGT+AGG | 0.686519 | 1.2:+82683028 | MS.gene065078:CDS |
TGGTGCTTCTAGAAATACAA+GGG | 0.689413 | 1.2:+82678429 | MS.gene065078:CDS |
CACAGACACAGCGAAATCAG+GGG | 0.690639 | 1.2:-82678749 | None:intergenic |
TGGTCTTCTTGTAGAGACGG+CGG | 0.691093 | 1.2:-82678307 | None:intergenic |
TATCAAAGAAGACAATCCTG+AGG | 0.716960 | 1.2:+82679851 | MS.gene065078:CDS |
TTGGTTCAGAAGGAATAACA+AGG | 0.722967 | 1.2:+82682737 | MS.gene065078:CDS |
ATAACAAGGTCAATTACCAG+GGG | 0.747841 | 1.2:+82682751 | MS.gene065078:CDS |
AGTAGAAGAATCAATCCCGG+AGG | 0.770052 | 1.2:+82682181 | MS.gene065078:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.2 | gene | 82677183 | 82685405 | 82677183 | ID=MS.gene065078 |
chr1.2 | mRNA | 82677183 | 82685405 | 82677183 | ID=MS.gene065078.t1;Parent=MS.gene065078 |
chr1.2 | exon | 82677183 | 82677345 | 82677183 | ID=MS.gene065078.t1.exon1;Parent=MS.gene065078.t1 |
chr1.2 | CDS | 82677183 | 82677345 | 82677183 | ID=cds.MS.gene065078.t1;Parent=MS.gene065078.t1 |
chr1.2 | exon | 82677849 | 82680019 | 82677849 | ID=MS.gene065078.t1.exon2;Parent=MS.gene065078.t1 |
chr1.2 | CDS | 82677849 | 82680019 | 82677849 | ID=cds.MS.gene065078.t1;Parent=MS.gene065078.t1 |
chr1.2 | exon | 82681995 | 82683279 | 82681995 | ID=MS.gene065078.t1.exon3;Parent=MS.gene065078.t1 |
chr1.2 | CDS | 82681995 | 82683279 | 82681995 | ID=cds.MS.gene065078.t1;Parent=MS.gene065078.t1 |
chr1.2 | exon | 82683583 | 82683848 | 82683583 | ID=MS.gene065078.t1.exon4;Parent=MS.gene065078.t1 |
chr1.2 | CDS | 82683583 | 82683848 | 82683583 | ID=cds.MS.gene065078.t1;Parent=MS.gene065078.t1 |
chr1.2 | exon | 82683940 | 82684146 | 82683940 | ID=MS.gene065078.t1.exon5;Parent=MS.gene065078.t1 |
chr1.2 | CDS | 82683940 | 82684146 | 82683940 | ID=cds.MS.gene065078.t1;Parent=MS.gene065078.t1 |
chr1.2 | exon | 82684631 | 82684788 | 82684631 | ID=MS.gene065078.t1.exon6;Parent=MS.gene065078.t1 |
chr1.2 | CDS | 82684631 | 82684788 | 82684631 | ID=cds.MS.gene065078.t1;Parent=MS.gene065078.t1 |
chr1.2 | exon | 82685123 | 82685211 | 82685123 | ID=MS.gene065078.t1.exon7;Parent=MS.gene065078.t1 |
chr1.2 | CDS | 82685123 | 82685211 | 82685123 | ID=cds.MS.gene065078.t1;Parent=MS.gene065078.t1 |
chr1.2 | exon | 82685323 | 82685405 | 82685323 | ID=MS.gene065078.t1.exon8;Parent=MS.gene065078.t1 |
chr1.2 | CDS | 82685323 | 82685405 | 82685323 | ID=cds.MS.gene065078.t1;Parent=MS.gene065078.t1 |
Gene Sequence |
Protein sequence |