AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene037144

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene037144.t1 MTR_2g042720 99.251 267 2 0 1 267 1 267 0.0 539
MS.gene037144.t1 MTR_8g023790 67.281 217 71 0 49 265 50 266 4.39e-106 308
MS.gene037144.t1 MTR_3g435460 51.741 201 91 2 65 265 56 250 1.34e-67 210
MS.gene037144.t1 MTR_3g435460 52.128 188 84 2 78 265 8 189 1.28e-62 195
MS.gene037144.t1 MTR_3g101670 41.912 272 143 5 1 266 2 264 2.29e-58 187
MS.gene037144.t1 MTR_5g098785 39.502 281 136 10 5 264 7 274 2.30e-51 169
MS.gene037144.t1 MTR_5g098780 39.789 284 129 11 5 264 7 272 2.62e-51 169
MS.gene037144.t1 MTR_2g008610 39.024 246 100 7 31 237 15 249 1.40e-40 141
MS.gene037144.t1 MTR_6g033320 40.488 205 94 7 65 260 49 234 3.38e-39 137
MS.gene037144.t1 MTR_4g015570 35.000 260 91 7 61 266 53 288 1.33e-38 137
MS.gene037144.t1 MTR_6g011870 36.032 247 122 9 39 266 31 260 1.57e-33 123
MS.gene037144.t1 MTR_6g011880 36.032 247 122 9 39 266 31 260 1.67e-33 122
MS.gene037144.t1 MTR_4g094605 33.099 284 144 10 2 266 5 261 3.12e-33 122
MS.gene037144.t1 MTR_6g011890 36.032 247 122 9 39 266 31 260 3.65e-33 122
MS.gene037144.t1 MTR_1g026550 36.916 214 107 5 72 266 125 329 5.47e-33 123
MS.gene037144.t1 MTR_6g060175 35.135 222 113 7 60 265 74 280 5.68e-33 122
MS.gene037144.t1 MTR_5g097280 33.579 271 140 11 3 255 1 249 2.09e-32 120
MS.gene037144.t1 MTR_6g012080 34.818 247 125 9 39 266 31 260 7.97e-32 118
MS.gene037144.t1 MTR_6g012110 36.283 226 108 9 60 266 52 260 1.47e-31 117
MS.gene037144.t1 MTR_2g081090 35.909 220 97 7 60 255 22 221 1.73e-30 114
MS.gene037144.t1 MTR_2g081090 35.909 220 97 7 60 255 49 248 2.06e-30 114
MS.gene037144.t1 MTR_6g060175 33.333 222 107 8 60 265 74 270 1.31e-27 107
MS.gene037144.t1 MTR_6g043600 35.242 227 119 8 45 266 21 224 5.00e-25 99.8
MS.gene037144.t1 MTR_3g070340 31.381 239 86 7 61 245 56 270 4.99e-24 98.2
MS.gene037144.t1 MTR_2g436960 45.679 81 38 2 187 267 27 101 3.68e-15 70.1
MS.gene037144.t1 MTR_5g098770 44.444 72 39 1 193 264 21 91 2.06e-13 65.1
MS.gene037144.t1 MTR_0003s0060 43.210 81 40 2 187 267 20 94 1.31e-12 62.8
MS.gene037144.t1 MTR_1g026550 52.632 57 27 0 72 128 125 181 6.13e-12 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene037144.t1 AT1G19150 74.597 248 61 1 19 266 24 269 1.00e-139 394
MS.gene037144.t1 AT3G61470 68.932 206 64 0 60 265 50 255 1.02e-103 302
MS.gene037144.t1 AT3G47470 46.835 237 106 4 29 265 35 251 2.46e-67 209
MS.gene037144.t1 AT1G45474 44.206 233 121 5 39 266 26 254 2.82e-55 179
MS.gene037144.t1 AT1G45474 44.206 233 121 5 39 266 26 254 2.82e-55 179
MS.gene037144.t1 AT1G61520 43.556 225 100 7 61 264 52 270 2.05e-50 167
MS.gene037144.t1 AT1G61520 43.556 225 100 7 61 264 52 270 2.05e-50 167
MS.gene037144.t1 AT1G61520 42.788 208 92 7 78 264 14 215 5.93e-43 146
MS.gene037144.t1 AT3G54890 42.439 205 90 7 65 260 48 233 6.24e-42 144
MS.gene037144.t1 AT1G15820 37.692 260 125 9 1 237 1 246 8.06e-41 141
MS.gene037144.t1 AT5G28450 63.366 101 37 0 165 265 71 171 8.05e-40 136
MS.gene037144.t1 AT5G01530 33.846 260 94 7 61 266 54 289 3.68e-36 130
MS.gene037144.t1 AT3G08940 32.095 296 119 9 28 266 16 286 1.17e-35 129
MS.gene037144.t1 AT2G05100 37.333 225 107 8 60 266 52 260 1.44e-34 125
MS.gene037144.t1 AT2G05070 37.333 225 107 8 60 266 52 260 2.02e-34 125
MS.gene037144.t1 AT3G27690 36.916 214 101 8 60 255 53 250 3.10e-33 122
MS.gene037144.t1 AT4G10340 38.356 219 104 8 60 262 65 268 3.17e-33 122
MS.gene037144.t1 AT1G76570 33.103 290 148 11 4 266 57 327 3.40e-33 123
MS.gene037144.t1 AT3G27690 36.916 214 101 8 60 255 85 282 3.53e-33 122
MS.gene037144.t1 AT2G34430 36.792 212 103 6 71 266 65 261 6.17e-33 121
MS.gene037144.t1 AT2G34420 36.792 212 103 6 71 266 64 260 6.91e-33 121
MS.gene037144.t1 AT1G29930 37.327 217 104 7 66 266 62 262 1.13e-32 120
MS.gene037144.t1 AT1G29920 37.327 217 104 7 66 266 62 262 1.18e-32 120
MS.gene037144.t1 AT1G29910 37.327 217 104 7 66 266 62 262 1.18e-32 120
MS.gene037144.t1 AT5G54270 36.816 201 95 6 72 255 64 249 5.17e-30 114
MS.gene037144.t1 AT2G40100 32.645 242 84 8 61 248 55 271 1.08e-27 107
MS.gene037144.t1 AT3G54890 36.757 185 89 7 65 240 48 213 3.04e-27 105
MS.gene037144.t1 AT2G05100 36.041 197 92 8 60 238 52 232 3.88e-26 104
MS.gene037144.t1 AT3G54890 34.804 204 73 7 65 260 48 199 8.83e-23 93.2
MS.gene037144.t1 AT3G54890 45.455 110 51 2 65 165 48 157 1.63e-20 86.3
MS.gene037144.t1 AT2G40100 34.400 125 33 2 61 142 55 173 4.77e-14 69.3
MS.gene037144.t1 AT3G08940 27.650 217 93 5 26 184 15 225 3.47e-13 67.8

Find 78 sgRNAs with CRISPR-Local

Find 154 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCAGCCTTCCTGGTGATTT+TGG 0.118612 2.3:+47178192 MS.gene037144:intron
CTTCCCAATTGCAGCCTTCC+TGG 0.199772 2.3:+47178183 MS.gene037144:intron
CTTGTGCAGGCTTTCACTTC+AGG 0.239967 2.3:+47179535 MS.gene037144:intron
CAGATCCAGAGTTGCTAAAA+TGG 0.292408 2.3:+47178475 MS.gene037144:CDS
TACCTGCCATCAAGCCATTC+AGG 0.297044 2.3:-47177833 None:intergenic
CATTGTTCAACTAGCCCTAA+TGG 0.301700 2.3:+47178653 MS.gene037144:CDS
GTTTGGCCTATTTGGTAACT+TGG 0.311362 2.3:-47178736 None:intergenic
GGGAACCACAATGGCCTATC+TGG 0.315426 2.3:-47177797 None:intergenic
TTAGTCCTCAAAACCATTAC+AGG 0.332116 2.3:-47178831 None:intergenic
GACCTTCAACCCAGCCCATT+AGG 0.343585 2.3:-47178668 None:intergenic
GGGTAACCAACATCTGGTTT+TGG 0.345083 2.3:-47178759 None:intergenic
GATGGCTCATCTTGCTGATC+CGG 0.383167 2.3:+47178944 MS.gene037144:CDS
TGGGCAATGTTAGGAGTATC+AGG 0.387629 2.3:+47178528 MS.gene037144:CDS
TTGAGCCCAAGTTACCAAAT+AGG 0.388379 2.3:+47178730 MS.gene037144:CDS
ATTGTTCAACTAGCCCTAAT+GGG 0.396013 2.3:+47178654 MS.gene037144:CDS
GCCCTAATGGGCTGGGTTGA+AGG 0.400415 2.3:+47178666 MS.gene037144:CDS
AGGACTAAGGAGATTAAGAA+TGG 0.401890 2.3:+47178846 MS.gene037144:CDS
CATGCAAGATGGGCAATGTT+AGG 0.401951 2.3:+47178519 MS.gene037144:CDS
ACCTTCAACCCAGCCCATTA+GGG 0.402982 2.3:-47178667 None:intergenic
TTCAACTAGCCCTAATGGGC+TGG 0.405517 2.3:+47178658 MS.gene037144:CDS
CTGGTAGTTCACCTCCTGAA+TGG 0.410603 2.3:+47177819 MS.gene037144:CDS
TCACCTCCTGAATGGCTTGA+TGG 0.411611 2.3:+47177827 MS.gene037144:CDS
TAGTCCTATTGATAATTTGA+TGG 0.421103 2.3:+47178926 MS.gene037144:CDS
TGATAATGAAGTGGAGGAAA+TGG 0.422619 2.3:-47177551 None:intergenic
TGAGCCATCAAATTATCAAT+AGG 0.426138 2.3:-47178930 None:intergenic
ATGCAGAGAAATAAGTCAAA+AGG 0.432712 2.3:+47177661 MS.gene037144:intron
TTGGTTACCCTGGTGGGCTA+TGG 0.449489 2.3:+47178772 MS.gene037144:CDS
TCAACTAGCCCTAATGGGCT+GGG 0.455066 2.3:+47178659 MS.gene037144:CDS
CTCAAAACCATTACAGGCTC+AGG 0.461055 2.3:-47178825 None:intergenic
TTTGGCCTATTTGGTAACTT+GGG 0.471715 2.3:-47178735 None:intergenic
ATGGCTCATCTTGCTGATCC+GGG 0.473722 2.3:+47178945 MS.gene037144:CDS
GCTGGGTTGAAGGTCGAAGA+TGG 0.479007 2.3:+47178676 MS.gene037144:CDS
CATTCAGGAGGTGAACTACC+AGG 0.483786 2.3:-47177818 None:intergenic
CTCCTGAATGGCTTGATGGC+AGG 0.485385 2.3:+47177831 MS.gene037144:CDS
GGATCAAACCATAGCCCACC+AGG 0.490806 2.3:-47178780 None:intergenic
GATCCTATGCAGTGGGGAAG+AGG 0.491222 2.3:+47178798 MS.gene037144:CDS
AGGTTCACCTGAGCCTGTAA+TGG 0.492772 2.3:+47178818 MS.gene037144:CDS
GATAGGCCATTGTGGTTCCC+TGG 0.495533 2.3:+47177800 MS.gene037144:CDS
TGAACAATGAATAGTGTTGT+TGG 0.498011 2.3:-47178639 None:intergenic
AGGTTGTTGATGTTGTTCCT+TGG 0.502633 2.3:-47177691 None:intergenic
GTGAACCACTTCCTCCAGAT+AGG 0.506478 2.3:+47177783 MS.gene037144:CDS
CCACCAGGGTAACCAACATC+TGG 0.511783 2.3:-47178765 None:intergenic
ACAATTAGAAACGCAAAGAA+AGG 0.512207 2.3:+47177746 MS.gene037144:CDS
AGAACTAATGCATGCAAGAT+GGG 0.516375 2.3:+47178509 MS.gene037144:CDS
CAGAACTAATGCATGCAAGA+TGG 0.524297 2.3:+47178508 MS.gene037144:CDS
GGCTCAATATCAACACTACC+CGG 0.525605 2.3:-47178714 None:intergenic
GAACAATGAATAGTGTTGTT+GGG 0.530037 2.3:-47178638 None:intergenic
GGACTAAGGAGATTAAGAAT+GGG 0.534450 2.3:+47178847 MS.gene037144:CDS
AATGGCCTATCTGGAGGAAG+TGG 0.535116 2.3:-47177788 None:intergenic
CTGGGTTGAAGGTCGAAGAT+GGG 0.540595 2.3:+47178677 MS.gene037144:CDS
AACTTCTCATGGTACAATGC+AGG 0.540715 2.3:+47178594 MS.gene037144:CDS
ATGGTTTGATCCTATGCAGT+GGG 0.554668 2.3:+47178791 MS.gene037144:CDS
TTTCAAGCTGTTTATGTTGG+GGG 0.563088 2.3:+47178903 MS.gene037144:CDS
GAACCTCTTCCCCACTGCAT+AGG 0.570209 2.3:-47178801 None:intergenic
TTCCTCCAGATAGGCCATTG+TGG 0.574027 2.3:+47177792 MS.gene037144:CDS
AAACCAGATGTTGGTTACCC+TGG 0.575868 2.3:+47178762 MS.gene037144:CDS
ATGGGCTGATATCGTTAACC+CGG 0.576122 2.3:+47178695 MS.gene037144:CDS
TATGGTTTGATCCTATGCAG+TGG 0.581606 2.3:+47178790 MS.gene037144:CDS
GAGAAAATGTTGACATGACC+CGG 0.581640 2.3:-47178963 None:intergenic
CAGATGTTGGTTACCCTGGT+GGG 0.584280 2.3:+47178766 MS.gene037144:CDS
TCTGCTGCTGCTTAACCATG+AGG 0.587348 2.3:-47177711 None:intergenic
CCAAACCCAAAACCAGATGT+TGG 0.602151 2.3:+47178753 MS.gene037144:CDS
TGGAAAACTTGATAATGAAG+TGG 0.604478 2.3:-47177560 None:intergenic
AAAACTTGATAATGAAGTGG+AGG 0.608373 2.3:-47177557 None:intergenic
CCAGATGTTGGTTACCCTGG+TGG 0.630637 2.3:+47178765 MS.gene037144:CDS
GGGTCAAAACCAAAATCACC+AGG 0.636273 2.3:-47178201 None:intergenic
GAACAACATCAACAACCTCA+TGG 0.646836 2.3:+47177696 MS.gene037144:CDS
AACCACAATGGCCTATCTGG+AGG 0.659675 2.3:-47177794 None:intergenic
AAGACATACCTAATCCAAGA+GGG 0.664832 2.3:-47178221 None:intergenic
CAAAACCAAAATCACCAGGA+AGG 0.665067 2.3:-47178197 None:intergenic
ATTCAGGAGGTGAACTACCA+GGG 0.668133 2.3:-47177817 None:intergenic
TGGGCTGATATCGTTAACCC+GGG 0.675104 2.3:+47178696 MS.gene037144:CDS
GAACTACCAGGGAACCACAA+TGG 0.679112 2.3:-47177806 None:intergenic
GCTCAATATCAACACTACCC+GGG 0.701726 2.3:-47178713 None:intergenic
CTGCCATCAAGCCATTCAGG+AGG 0.705497 2.3:-47177830 None:intergenic
GATCAAACCATAGCCCACCA+GGG 0.714446 2.3:-47178779 None:intergenic
TAAGACATACCTAATCCAAG+AGG 0.724614 2.3:-47178222 None:intergenic
TGGTTTGATCCTATGCAGTG+GGG 0.749765 2.3:+47178792 MS.gene037144:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTCCAAAATATAAAATAAAA+TGG - chr2.3:47178099-47178118 None:intergenic 10.0%
!! TTTAATTCATTATATAATAG+AGG + chr2.3:47179200-47179219 MS.gene037144:intron 10.0%
!!! ATTTTTGTAAATTTTCTTAA+TGG + chr2.3:47177857-47177876 MS.gene037144:intron 10.0%
!!! TTCCATTTTATTTTATATTT+TGG + chr2.3:47178094-47178113 MS.gene037144:intron 10.0%
!! AATAATAAGTTAAAAAGAGT+TGG - chr2.3:47177593-47177612 None:intergenic 15.0%
!!! AATTTTCTTAATGGAAAATT+TGG + chr2.3:47177866-47177885 MS.gene037144:intron 15.0%
!!! ATTTTTACTTTCGTTTTATT+TGG + chr2.3:47177931-47177950 MS.gene037144:intron 15.0%
!! AAAAAAAAAGAACATCATAG+TGG - chr2.3:47178042-47178061 None:intergenic 20.0%
!! AAAAAAAAGAACATCATAGT+GGG - chr2.3:47178041-47178060 None:intergenic 20.0%
!! TTATAGGTTAATTAGTTACT+TGG - chr2.3:47178438-47178457 None:intergenic 20.0%
! AAAATTCATGTAGCTTCTAT+TGG - chr2.3:47179334-47179353 None:intergenic 25.0%
! ACCTATAAATTAATCCTTTC+AGG + chr2.3:47178450-47178469 MS.gene037144:intron 25.0%
! ATTTGATCACATCTAATTAC+TGG + chr2.3:47178365-47178384 MS.gene037144:intron 25.0%
! CAAATGGTAAAGAGTAAATA+TGG + chr2.3:47178004-47178023 MS.gene037144:intron 25.0%
! CATATTTACTCTTTACCATT+TGG - chr2.3:47178006-47178025 None:intergenic 25.0%
! CCAGAAATACTTGAAAAAAT+TGG + chr2.3:47178561-47178580 MS.gene037144:CDS 25.0%
! CCTATAAATTAATCCTTTCA+GGG + chr2.3:47178451-47178470 MS.gene037144:intron 25.0%
! GAAGTTGTTTAATGATGATA+AGG - chr2.3:47178141-47178160 None:intergenic 25.0%
! TTCTACTATGTTTCATTTGT+AGG + chr2.3:47179010-47179029 MS.gene037144:intron 25.0%
!! TAGTCCTATTGATAATTTGA+TGG + chr2.3:47178926-47178945 MS.gene037144:CDS 25.0%
!!! AATTTTTAAGCGTTAGGTTA+GGG + chr2.3:47179348-47179367 MS.gene037144:intron 25.0%
!!! ATAAATCAATGTTTTGATCC+CGG + chr2.3:47179465-47179484 MS.gene037144:intron 25.0%
!!! CCAATTTTTTCAAGTATTTC+TGG - chr2.3:47178564-47178583 None:intergenic 25.0%
!!! TACATGAATTTTTAAGCGTT+AGG + chr2.3:47179342-47179361 MS.gene037144:intron 25.0%
AAACAATATGCACACTAACT+AGG + chr2.3:47179422-47179441 MS.gene037144:intron 30.0%
ACAATTAGAAACGCAAAGAA+AGG + chr2.3:47177746-47177765 MS.gene037144:CDS 30.0%
ATGCAGAGAAATAAGTCAAA+AGG + chr2.3:47177661-47177680 MS.gene037144:intron 30.0%
ATGTTCACTTTATGATGTGT+TGG + chr2.3:47178265-47178284 MS.gene037144:intron 30.0%
CATCATTAAATGCATGTGTA+AGG - chr2.3:47179178-47179197 None:intergenic 30.0%
CCCTGAAAGGATTAATTTAT+AGG - chr2.3:47178454-47178473 None:intergenic 30.0%
GTTATGTCAAAAACTTCTCA+TGG + chr2.3:47178583-47178602 MS.gene037144:CDS 30.0%
GTTTAATGATGATAAGGCTT+TGG - chr2.3:47178135-47178154 None:intergenic 30.0%
TAGGTTAATTAGTTACTTGG+TGG - chr2.3:47178435-47178454 None:intergenic 30.0%
TATATCGTGTATTTACCACA+TGG - chr2.3:47179120-47179139 None:intergenic 30.0%
TGAACAATGAATAGTGTTGT+TGG - chr2.3:47178642-47178661 None:intergenic 30.0%
TGAGCCATCAAATTATCAAT+AGG - chr2.3:47178933-47178952 None:intergenic 30.0%
! CATTATCAAGTTTTCCAAAC+AGG + chr2.3:47177566-47177585 MS.gene037144:CDS 30.0%
! GAACAATGAATAGTGTTGTT+GGG - chr2.3:47178641-47178660 None:intergenic 30.0%
!! AAAACTTGATAATGAAGTGG+AGG - chr2.3:47177560-47177579 None:intergenic 30.0%
!! GAATTTTTAAGCGTTAGGTT+AGG + chr2.3:47179347-47179366 MS.gene037144:intron 30.0%
!! GTTTTCAAGCTGTTTATGTT+GGG + chr2.3:47178901-47178920 MS.gene037144:CDS 30.0%
!! TGGAAAACTTGATAATGAAG+TGG - chr2.3:47177563-47177582 None:intergenic 30.0%
!! TGTTTTCAAGCTGTTTATGT+TGG + chr2.3:47178900-47178919 MS.gene037144:CDS 30.0%
!! TTTTCAAGCTGTTTATGTTG+GGG + chr2.3:47178902-47178921 MS.gene037144:CDS 30.0%
AAATCAAACCCTGAACCAAA+TGG + chr2.3:47177988-47178007 MS.gene037144:intron 35.0%
AAGACATACCTAATCCAAGA+GGG - chr2.3:47178224-47178243 None:intergenic 35.0%
AATTACTGGTGACTACTTGT+CGG + chr2.3:47178379-47178398 MS.gene037144:intron 35.0%
AGAACTAATGCATGCAAGAT+GGG + chr2.3:47178509-47178528 MS.gene037144:CDS 35.0%
AGGACTAAGGAGATTAAGAA+TGG + chr2.3:47178846-47178865 MS.gene037144:CDS 35.0%
ATTGTTCAACTAGCCCTAAT+GGG + chr2.3:47178654-47178673 MS.gene037144:CDS 35.0%
CATGTAGCTTCTATTGGAAA+TGG - chr2.3:47179328-47179347 None:intergenic 35.0%
GGACTAAGGAGATTAAGAAT+GGG + chr2.3:47178847-47178866 MS.gene037144:CDS 35.0%
TAAAAAGAGTTGGACCTGTT+TGG - chr2.3:47177583-47177602 None:intergenic 35.0%
TAAGACATACCTAATCCAAG+AGG - chr2.3:47178225-47178244 None:intergenic 35.0%
TTAGTCCTCAAAACCATTAC+AGG - chr2.3:47178834-47178853 None:intergenic 35.0%
TTTCAAGCTGTTTATGTTGG+GGG + chr2.3:47178903-47178922 MS.gene037144:CDS 35.0%
! ACTCTTTACCATTTGGTTCA+GGG - chr2.3:47177999-47178018 None:intergenic 35.0%
! AGTCAAAAGGTTTTACACCA+AGG + chr2.3:47177674-47177693 MS.gene037144:CDS 35.0%
! CGTCTTCAATATGAAGTATC+AGG - chr2.3:47178300-47178319 None:intergenic 35.0%
! GCTTCTATTGGAAATGGATT+AGG - chr2.3:47179322-47179341 None:intergenic 35.0%
! TACTCTTTACCATTTGGTTC+AGG - chr2.3:47178000-47178019 None:intergenic 35.0%
! TGATAATGAAGTGGAGGAAA+TGG - chr2.3:47177554-47177573 None:intergenic 35.0%
! TTTGGCCTATTTGGTAACTT+GGG - chr2.3:47178738-47178757 None:intergenic 35.0%
!! TCATGCCTTAATGTTTTGAG+CGG + chr2.3:47179242-47179261 MS.gene037144:intron 35.0%
!! TTCAGGGTTTGATTTCTAGT+CGG - chr2.3:47177983-47178002 None:intergenic 35.0%
!! TTGCTATGCTTGCTTTTCTA+GGG + chr2.3:47178874-47178893 MS.gene037144:CDS 35.0%
!!! TGTAATGGTTTTGAGGACTA+AGG + chr2.3:47178833-47178852 MS.gene037144:CDS 35.0%
AACTTCTCATGGTACAATGC+AGG + chr2.3:47178594-47178613 MS.gene037144:CDS 40.0%
AGGTTGTTGATGTTGTTCCT+TGG - chr2.3:47177694-47177713 None:intergenic 40.0%
ATGGTTTGATCCTATGCAGT+GGG + chr2.3:47178791-47178810 MS.gene037144:CDS 40.0%
CAAAACCAAAATCACCAGGA+AGG - chr2.3:47178200-47178219 None:intergenic 40.0%
CAGAACTAATGCATGCAAGA+TGG + chr2.3:47178508-47178527 MS.gene037144:CDS 40.0%
CAGATCCAGAGTTGCTAAAA+TGG + chr2.3:47178475-47178494 MS.gene037144:CDS 40.0%
CATTGTTCAACTAGCCCTAA+TGG + chr2.3:47178653-47178672 MS.gene037144:CDS 40.0%
CTTCATATTGAAGACGTGTC+TGG + chr2.3:47178304-47178323 MS.gene037144:intron 40.0%
GAACAACATCAACAACCTCA+TGG + chr2.3:47177696-47177715 MS.gene037144:CDS 40.0%
GAGAAAATGTTGACATGACC+CGG - chr2.3:47178966-47178985 None:intergenic 40.0%
TATGGTTTGATCCTATGCAG+TGG + chr2.3:47178790-47178809 MS.gene037144:CDS 40.0%
TCTCTCCGCTCAAAACATTA+AGG - chr2.3:47179250-47179269 None:intergenic 40.0%
TTGAGCCCAAGTTACCAAAT+AGG + chr2.3:47178730-47178749 MS.gene037144:CDS 40.0%
! ACAGAAGTTTTTGCTTGTGC+AGG + chr2.3:47179522-47179541 MS.gene037144:intron 40.0%
! GGGTCATGTCAACATTTTCT+CGG + chr2.3:47178965-47178984 MS.gene037144:CDS 40.0%
! GTTTGGCCTATTTGGTAACT+TGG - chr2.3:47178739-47178758 None:intergenic 40.0%
! TGGTGGTGAATCAATAGACA+CGG - chr2.3:47178418-47178437 None:intergenic 40.0%
!! CTTGCTATGCTTGCTTTTCT+AGG + chr2.3:47178873-47178892 MS.gene037144:CDS 40.0%
!! GCTAACCATTTTAGCAACTC+TGG - chr2.3:47178483-47178502 None:intergenic 40.0%
!!! GATTTTGGTTTTGACCCTCT+TGG + chr2.3:47178207-47178226 MS.gene037144:CDS 40.0%
!!! GGTAACCAACATCTGGTTTT+GGG - chr2.3:47178761-47178780 None:intergenic 40.0%
AGGCATGACACATGAGTACA+TGG - chr2.3:47179230-47179249 None:intergenic 45.0%
ATTCAGGAGGTGAACTACCA+GGG - chr2.3:47177820-47177839 None:intergenic 45.0%
CATGCAAGATGGGCAATGTT+AGG + chr2.3:47178519-47178538 MS.gene037144:CDS 45.0%
CCAAACCCAAAACCAGATGT+TGG + chr2.3:47178753-47178772 MS.gene037144:CDS 45.0%
CTCAAAACCATTACAGGCTC+AGG - chr2.3:47178828-47178847 None:intergenic 45.0%
GCTCAATATCAACACTACCC+GGG - chr2.3:47178716-47178735 None:intergenic 45.0%
GGCTCAATATCAACACTACC+CGG - chr2.3:47178717-47178736 None:intergenic 45.0%
GGGTCAAAACCAAAATCACC+AGG - chr2.3:47178204-47178223 None:intergenic 45.0%
TACTTCTAACACCTCTCAGC+CGG - chr2.3:47179487-47179506 None:intergenic 45.0%
TGGTTTGATCCTATGCAGTG+GGG + chr2.3:47178792-47178811 MS.gene037144:CDS 45.0%
! AAACCAGATGTTGGTTACCC+TGG + chr2.3:47178762-47178781 MS.gene037144:CDS 45.0%
! ACATCATAGTGGGACACAAG+TGG - chr2.3:47178031-47178050 None:intergenic 45.0%
! ATGGGCTGATATCGTTAACC+CGG + chr2.3:47178695-47178714 MS.gene037144:CDS 45.0%
!! CGATTAGTTTCACGACCATG+TGG + chr2.3:47179102-47179121 MS.gene037144:intron 45.0%
!! CTGAGCCTGTAATGGTTTTG+AGG + chr2.3:47178826-47178845 MS.gene037144:CDS 45.0%
!! GGGTAACCAACATCTGGTTT+TGG - chr2.3:47178762-47178781 None:intergenic 45.0%
!! GGTTTTGACCCTCTTGGATT+AGG + chr2.3:47178213-47178232 MS.gene037144:CDS 45.0%
!! TGGGCAATGTTAGGAGTATC+AGG + chr2.3:47178528-47178547 MS.gene037144:CDS 45.0%
!!! CCAACATCTGGTTTTGGGTT+TGG - chr2.3:47178756-47178775 None:intergenic 45.0%
!!! GGTTTTGGGTTTGGCCTATT+TGG - chr2.3:47178747-47178766 None:intergenic 45.0%
AACCACAATGGCCTATCTGG+AGG - chr2.3:47177797-47177816 None:intergenic 50.0%
AATGGCCTATCTGGAGGAAG+TGG - chr2.3:47177791-47177810 None:intergenic 50.0%
ACCTTCAACCCAGCCCATTA+GGG - chr2.3:47178670-47178689 None:intergenic 50.0%
ACTCTGGATCTGACCCTGAA+AGG - chr2.3:47178467-47178486 None:intergenic 50.0%
ACTTCTAACACCTCTCAGCC+GGG - chr2.3:47179486-47179505 None:intergenic 50.0%
AGGTTCACCTGAGCCTGTAA+TGG + chr2.3:47178818-47178837 MS.gene037144:CDS 50.0%
ATCACCAGGAAGGCTGCAAT+TGG - chr2.3:47178190-47178209 None:intergenic 50.0%
ATGGCTCATCTTGCTGATCC+GGG + chr2.3:47178945-47178964 MS.gene037144:CDS 50.0%
CATTCAGGAGGTGAACTACC+AGG - chr2.3:47177821-47177840 None:intergenic 50.0%
CTGGTAGTTCACCTCCTGAA+TGG + chr2.3:47177819-47177838 MS.gene037144:CDS 50.0%
CTTGTGCAGGCTTTCACTTC+AGG + chr2.3:47179535-47179554 MS.gene037144:intron 50.0%
GAACTACCAGGGAACCACAA+TGG - chr2.3:47177809-47177828 None:intergenic 50.0%
GATCAAACCATAGCCCACCA+GGG - chr2.3:47178782-47178801 None:intergenic 50.0%
GATGGCTCATCTTGCTGATC+CGG + chr2.3:47178944-47178963 MS.gene037144:CDS 50.0%
GTGAACCACTTCCTCCAGAT+AGG + chr2.3:47177783-47177802 MS.gene037144:CDS 50.0%
GTGACTACTTGTCGGTACCA+CGG + chr2.3:47178387-47178406 MS.gene037144:intron 50.0%
TACCTGCCATCAAGCCATTC+AGG - chr2.3:47177836-47177855 None:intergenic 50.0%
TCACCAGGAAGGCTGCAATT+GGG - chr2.3:47178189-47178208 None:intergenic 50.0%
TCACCTCCTGAATGGCTTGA+TGG + chr2.3:47177827-47177846 MS.gene037144:CDS 50.0%
TGGGCTGATATCGTTAACCC+GGG + chr2.3:47178696-47178715 MS.gene037144:CDS 50.0%
TTCCTCCAGATAGGCCATTG+TGG + chr2.3:47177792-47177811 MS.gene037144:CDS 50.0%
! CAGATGTTGGTTACCCTGGT+GGG + chr2.3:47178766-47178785 MS.gene037144:CDS 50.0%
! CTGGGTTGAAGGTCGAAGAT+GGG + chr2.3:47178677-47178696 MS.gene037144:CDS 50.0%
! TCTGCTGCTGCTTAACCATG+AGG - chr2.3:47177714-47177733 None:intergenic 50.0%
! TGCAGCCTTCCTGGTGATTT+TGG + chr2.3:47178192-47178211 MS.gene037144:intron 50.0%
! TTCAACTAGCCCTAATGGGC+TGG + chr2.3:47178658-47178677 MS.gene037144:CDS 50.0%
!! TCAACTAGCCCTAATGGGCT+GGG + chr2.3:47178659-47178678 MS.gene037144:CDS 50.0%
!! TGATTTCTAGTCGGTGCGTG+CGG - chr2.3:47177974-47177993 None:intergenic 50.0%
!!! ATGTTTTGATCCCGGCTGAG+AGG + chr2.3:47179473-47179492 MS.gene037144:intron 50.0%
CCACCAGGGTAACCAACATC+TGG - chr2.3:47178768-47178787 None:intergenic 55.0%
CTGCCATCAAGCCATTCAGG+AGG - chr2.3:47177833-47177852 None:intergenic 55.0%
CTTCCCAATTGCAGCCTTCC+TGG + chr2.3:47178183-47178202 MS.gene037144:intron 55.0%
GAACCTCTTCCCCACTGCAT+AGG - chr2.3:47178804-47178823 None:intergenic 55.0%
GACCTTCAACCCAGCCCATT+AGG - chr2.3:47178671-47178690 None:intergenic 55.0%
GATAGGCCATTGTGGTTCCC+TGG + chr2.3:47177800-47177819 MS.gene037144:CDS 55.0%
GATCCTATGCAGTGGGGAAG+AGG + chr2.3:47178798-47178817 MS.gene037144:CDS 55.0%
GGATCAAACCATAGCCCACC+AGG - chr2.3:47178783-47178802 None:intergenic 55.0%
GGGAACCACAATGGCCTATC+TGG - chr2.3:47177800-47177819 None:intergenic 55.0%
! CCAGATGTTGGTTACCCTGG+TGG + chr2.3:47178765-47178784 MS.gene037144:CDS 55.0%
! CTCCTGAATGGCTTGATGGC+AGG + chr2.3:47177831-47177850 MS.gene037144:CDS 55.0%
! GCTGGGTTGAAGGTCGAAGA+TGG + chr2.3:47178676-47178695 MS.gene037144:CDS 55.0%
! GTGCGTGCGGAGGATACTTT+TGG - chr2.3:47177961-47177980 None:intergenic 55.0%
!! TTGGTTACCCTGGTGGGCTA+TGG + chr2.3:47178772-47178791 MS.gene037144:CDS 55.0%
CAATAGACACGGCACGACCG+TGG - chr2.3:47178407-47178426 None:intergenic 60.0%
! TTTCTAGTCGGTGCGTGCGG+AGG - chr2.3:47177971-47177990 None:intergenic 60.0%
!! GCCCTAATGGGCTGGGTTGA+AGG + chr2.3:47178666-47178685 MS.gene037144:CDS 60.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 47177541 47179561 47177541 ID=MS.gene037144
chr2.3 mRNA 47177541 47179561 47177541 ID=MS.gene037144.t1;Parent=MS.gene037144
chr2.3 exon 47177541 47177587 47177541 ID=MS.gene037144.t1.exon1;Parent=MS.gene037144.t1
chr2.3 CDS 47177541 47177587 47177541 ID=cds.MS.gene037144.t1;Parent=MS.gene037144.t1
chr2.3 exon 47177667 47177852 47177667 ID=MS.gene037144.t1.exon2;Parent=MS.gene037144.t1
chr2.3 CDS 47177667 47177852 47177667 ID=cds.MS.gene037144.t1;Parent=MS.gene037144.t1
chr2.3 exon 47178197 47178234 47178197 ID=MS.gene037144.t1.exon3;Parent=MS.gene037144.t1
chr2.3 CDS 47178197 47178234 47178197 ID=cds.MS.gene037144.t1;Parent=MS.gene037144.t1
chr2.3 exon 47178472 47178986 47178472 ID=MS.gene037144.t1.exon4;Parent=MS.gene037144.t1
chr2.3 CDS 47178472 47178986 47178472 ID=cds.MS.gene037144.t1;Parent=MS.gene037144.t1
chr2.3 exon 47179544 47179561 47179544 ID=MS.gene037144.t1.exon5;Parent=MS.gene037144.t1
chr2.3 CDS 47179544 47179561 47179544 ID=cds.MS.gene037144.t1;Parent=MS.gene037144.t1
Gene Sequence

>MS.gene037144

ATGGCTTTAGCCATTTCCTCCACTTCATTATCAAGTTTTCCAAACAGGTCCAACTCTTTTTAACTTATTATTATTATGCTCATTGATTAATTCTTAAACTATATAGTTTTTTGCATTTTGATGCAGAGAAATAAGTCAAAAGGTTTTACACCAAGGAACAACATCAACAACCTCATGGTTAAGCAGCAGCAGAAGAAGAACACTTACAATTAGAAACGCAAAGAAAGGAGTGTCAGATGTTTGTGAACCACTTCCTCCAGATAGGCCATTGTGGTTCCCTGGTAGTTCACCTCCTGAATGGCTTGATGGCAGGTAAATTTTTGTAAATTTTCTTAATGGAAAATTTGGAGCAGTTAGATATAATTTTTGTTTTTTAAAAAAAAAAAAATTATTTTTACTTTCGTTTTATTTGGTAAACCAAAAGTATCCTCCGCACGCACCGACTAGAAATCAAACCCTGAACCAAATGGTAAAGAGTAAATATGGACCACTTGTGTCCCACTATGATGTTCTTTTTTTTTACTTTAATTTTAAAAAATATTTATTTATTTATTTCCATTTTATTTTATATTTTGGAAGAAAAAAAAAATGCCAAAGCCTTATCATCATTAAACAACTTCAGCAGCATAATCTTTTGATCTTCTTCCCAATTGCAGCCTTCCTGGTGATTTTGGTTTTGACCCTCTTGGATTAGGTATGTCTTACTTTCAATATGAATAACAAAATGTTCACTTTATGATGTGTTGGTCTATTTAGCCTGATACTTCATATTGAAGACGTGTCTGGTGTCTGATACATATCGACGTCGTACACGACACTGTAACATTTGATCACATCTAATTACTGGTGACTACTTGTCGGTACCACGGTCGTGCCGTGTCTATTGATTCACCACCAAGTAACTAATTAACCTATAAATTAATCCTTTCAGGGTCAGATCCAGAGTTGCTAAAATGGTTAGCACAAGCAGAACTAATGCATGCAAGATGGGCAATGTTAGGAGTATCAGGAATTTTAATTCCAGAAATACTTGAAAAAATTGGTTATGTCAAAAACTTCTCATGGTACAATGCAGGCTCAGTAGAATATTTTGCAGACCCAACAACACTATTCATTGTTCAACTAGCCCTAATGGGCTGGGTTGAAGGTCGAAGATGGGCTGATATCGTTAACCCGGGTAGTGTTGATATTGAGCCCAAGTTACCAAATAGGCCAAACCCAAAACCAGATGTTGGTTACCCTGGTGGGCTATGGTTTGATCCTATGCAGTGGGGAAGAGGTTCACCTGAGCCTGTAATGGTTTTGAGGACTAAGGAGATTAAGAATGGGAGACTTGCTATGCTTGCTTTTCTAGGGTTTTGTTTTCAAGCTGTTTATGTTGGGGGTAGTCCTATTGATAATTTGATGGCTCATCTTGCTGATCCGGGTCATGTCAACATTTTCTCGGTAATTAATAATCTTTATTTCATTTCTACTATGTTTCATTTGTAGGTTTCTTATCAATTAGCTGTTTGTTAGTGCTGTTCATATAGCGATTGAGTTGTTAGAGTTTAAGTGTGATCGATTAGTTTCACGACCATGTGGTAAATACACGATATATACAATTTAATATATACATCGTTAGTGTAAAATAGCCTTACACATGCATTTAATGATGTTTTTAATTCATTATATAATAGAGGTGATCCATGTACTCATGTGTCATGCCTTAATGTTTTGAGCGGAGAGATGTAAGTGTGTGAAAAATAGATGTAAATGTTGATATCGTTGTGACTACGCCTAATCCATTTCCAATAGAAGCTACATGAATTTTTAAGCGTTAGGTTAGGGTGAGTGTTACATGTACAAGTCTAACTATTATATATTGATTGCTACAAAATAAAACAATATGCACACTAACTAGGAGATAGTCTCACACAACGCGATAAATCAATGTTTTGATCCCGGCTGAGAGGTGTTAGAAGTAACGAGAATGATTGTGACAGAAGTTTTTGCTTGTGCAGGCTTTCACTTCAGGATAG
Protein sequence

>MS.gene037144.t1

MALAISSTSLSSFPNREISQKVLHQGTTSTTSWLSSSRRRTLTIRNAKKGVSDVCEPLPPDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPELLKWLAQAELMHARWAMLGVSGILIPEILEKIGYVKNFSWYNAGSVEYFADPTTLFIVQLALMGWVEGRRWADIVNPGSVDIEPKLPNRPNPKPDVGYPGGLWFDPMQWGRGSPEPVMVLRTKEIKNGRLAMLAFLGFCFQAVYVGGSPIDNLMAHLADPGHVNIFSAFTSG