Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene038087.t1 | XP_013468466.1 | 96.7 | 299 | 10 | 0 | 1 | 299 | 1 | 299 | 1.00E-161 | 579.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene038087.t1 | Q3EDJ0 | 74.0 | 296 | 67 | 4 | 6 | 299 | 3 | 290 | 4.5e-118 | 425.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene038087.t1 | A0A072VM53 | 96.7 | 299 | 10 | 0 | 1 | 299 | 1 | 299 | 7.3e-162 | 579.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene23961 | MS.gene038087 | PPI |
MS.gene89583 | MS.gene038087 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene038087.t1 | MTR_1g069750 | 96.656 | 299 | 10 | 0 | 1 | 299 | 1 | 299 | 0.0 | 603 |
MS.gene038087.t1 | MTR_1g084720 | 55.431 | 267 | 111 | 5 | 10 | 270 | 6 | 270 | 5.75e-100 | 296 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene038087.t1 | AT1G03905 | 76.408 | 284 | 61 | 3 | 16 | 299 | 13 | 290 | 3.31e-154 | 432 |
MS.gene038087.t1 | AT5G44110 | 74.061 | 293 | 62 | 4 | 8 | 299 | 3 | 282 | 2.35e-149 | 420 |
MS.gene038087.t1 | AT1G03905 | 78.509 | 228 | 47 | 2 | 72 | 299 | 1 | 226 | 7.75e-126 | 358 |
MS.gene038087.t1 | AT1G03905 | 78.509 | 228 | 47 | 2 | 72 | 299 | 1 | 226 | 7.75e-126 | 358 |
MS.gene038087.t1 | AT1G03905 | 78.509 | 228 | 47 | 2 | 72 | 299 | 1 | 226 | 7.75e-126 | 358 |
MS.gene038087.t1 | AT5G44110 | 76.555 | 209 | 44 | 2 | 8 | 215 | 3 | 207 | 3.33e-113 | 326 |
MS.gene038087.t1 | AT5G02270 | 58.140 | 258 | 101 | 4 | 8 | 260 | 5 | 260 | 1.25e-104 | 308 |
MS.gene038087.t1 | AT5G02270 | 53.169 | 284 | 100 | 5 | 8 | 260 | 5 | 286 | 1.68e-98 | 294 |
MS.gene038087.t1 | AT5G44110 | 77.976 | 168 | 32 | 2 | 8 | 174 | 3 | 166 | 1.70e-90 | 268 |
MS.gene038087.t1 | AT5G44110 | 81.250 | 144 | 27 | 0 | 72 | 215 | 1 | 144 | 1.13e-83 | 248 |
Find 69 sgRNAs with CRISPR-Local
Find 246 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TAGTGGTGATCTTGCTTATT+TGG | 0.198378 | 1.2:-52901455 | MS.gene038087:CDS |
CTTGAGCATTAGATGTATTC+TGG | 0.205818 | 1.2:+52897993 | None:intergenic |
TGTTACTCGAATGGATTTAT+TGG | 0.213870 | 1.2:-52898561 | MS.gene038087:CDS |
GGCATTTCAGGTTCTCTTGC+TGG | 0.245341 | 1.2:-52898609 | MS.gene038087:intron |
AACTACGTTGTTGAAGATTC+TGG | 0.281207 | 1.2:-52901557 | MS.gene038087:CDS |
TTGCTTATTTGGGTGGATCT+TGG | 0.297721 | 1.2:-52901444 | MS.gene038087:CDS |
TCAATCCATGATACCTTATA+AGG | 0.305162 | 1.2:+52899382 | None:intergenic |
GGGTCTTCTTCATCCTTATA+AGG | 0.319104 | 1.2:-52899395 | MS.gene038087:intron |
GACGAGGAGGCATCTGGATC+TGG | 0.325558 | 1.2:+52901600 | None:intergenic |
AGTGGTGATCTTGCTTATTT+GGG | 0.367794 | 1.2:-52901454 | MS.gene038087:CDS |
TGCTGTCTGTTGTCGAGTCC+TGG | 0.392760 | 1.2:-52898054 | MS.gene038087:CDS |
GCGTCGAGTGCAAATCTGTT+TGG | 0.394075 | 1.2:-52899416 | MS.gene038087:CDS |
GGAGACATGGGCAACTCATT+TGG | 0.399798 | 1.2:-52898152 | MS.gene038087:CDS |
TTGTTGTTGGATGTCGTTGT+AGG | 0.412895 | 1.2:+52901663 | None:intergenic |
TCTGCTGAACATATGATATT+CGG | 0.419547 | 1.2:-52899810 | MS.gene038087:CDS |
AGAGCGGTGGTTGTTGTTGT+TGG | 0.426946 | 1.2:+52901650 | None:intergenic |
CGTCGAGTGCAAATCTGTTT+GGG | 0.431328 | 1.2:-52899415 | MS.gene038087:CDS |
TGTAGGAGAATTGCATTCCT+TGG | 0.435035 | 1.2:+52901680 | None:intergenic |
ATCAACTTGTCTCTCCTGTC+AGG | 0.438091 | 1.2:+52899496 | None:intergenic |
CTTTGTTTCAGCACGGAGCC+AGG | 0.439414 | 1.2:+52898036 | None:intergenic |
AGCACCGACGAGGAGGCATC+TGG | 0.446647 | 1.2:+52901594 | None:intergenic |
CTCGTCGGTGCTAACGGATC+TGG | 0.449071 | 1.2:-52901583 | MS.gene038087:CDS |
CACTCGACGCCGCTGCCCAT+CGG | 0.468540 | 1.2:+52899429 | None:intergenic |
TCGATAGTATGCCATGTGTC+TGG | 0.475819 | 1.2:+52897934 | None:intergenic |
GCATTAGATGTATTCTGGAC+AGG | 0.480572 | 1.2:+52897998 | None:intergenic |
GGATTTATTGGAATTCTTCA+AGG | 0.489781 | 1.2:-52898549 | MS.gene038087:CDS |
TCAGGTTCTCTTGCTGGATG+AGG | 0.494180 | 1.2:-52898603 | MS.gene038087:intron |
TGCCTCCTCGTCGGTGCTAA+CGG | 0.499231 | 1.2:-52901589 | MS.gene038087:CDS |
TCTGCAGTGGCGAATGCATA+AGG | 0.499282 | 1.2:-52899455 | MS.gene038087:CDS |
CCAGGGAGACATTCCACTGC+AGG | 0.508285 | 1.2:-52899841 | MS.gene038087:intron |
TTGGACTCTGATTCCGCTCG+AGG | 0.511444 | 1.2:+52901699 | None:intergenic |
CAGAATACATCTAATGCTCA+AGG | 0.515770 | 1.2:-52897992 | MS.gene038087:CDS |
ACGAGGAGGCATCTGGATCT+GGG | 0.523721 | 1.2:+52901601 | None:intergenic |
ACGTTGTTGAAGATTCTGGC+TGG | 0.524614 | 1.2:-52901553 | MS.gene038087:CDS |
CCTGGATGTTGTTACTCGAA+TGG | 0.526845 | 1.2:-52898570 | MS.gene038087:CDS |
GGTGATCTTGCTTATTTGGG+TGG | 0.528094 | 1.2:-52901451 | MS.gene038087:CDS |
TTGAAGGTGTTGATCCTGAC+AGG | 0.537915 | 1.2:-52899510 | MS.gene038087:CDS |
CGTTGTTGAAGATTCTGGCT+GGG | 0.548568 | 1.2:-52901552 | MS.gene038087:CDS |
GATTCTGGCTGGGAAGCATA+TGG | 0.548571 | 1.2:-52901542 | MS.gene038087:CDS |
GCTGGGAAGCATATGGTTGG+AGG | 0.550659 | 1.2:-52901535 | MS.gene038087:CDS |
CGAATGCATAAGGTATCCGA+TGG | 0.557234 | 1.2:-52899445 | MS.gene038087:CDS |
ATATACAAGAAGGCGAATTG+AGG | 0.569400 | 1.2:-52898126 | MS.gene038087:CDS |
CTTCAAGGAAGAATGTGAGC+AGG | 0.571124 | 1.2:-52898534 | MS.gene038087:intron |
CTCTTCATCATCCAGACACA+TGG | 0.583208 | 1.2:-52897945 | MS.gene038087:CDS |
GCAGAGAAGTCTCCCTGCAG+TGG | 0.587594 | 1.2:+52899828 | None:intergenic |
TCGAGCGGAATCAGAGTCCA+AGG | 0.594046 | 1.2:-52901697 | MS.gene038087:CDS |
TTTCAAGCTTTGTTTCAGCA+CGG | 0.594104 | 1.2:+52898029 | None:intergenic |
ATAAGGTATCCGATGGGCAG+CGG | 0.595876 | 1.2:-52899438 | MS.gene038087:CDS |
CTGGCTGGGAAGCATATGGT+TGG | 0.597197 | 1.2:-52901538 | MS.gene038087:CDS |
AGATCCAGATGCCTCCTCGT+CGG | 0.603819 | 1.2:-52901598 | MS.gene038087:CDS |
CAGGGAGACATTCCACTGCA+GGG | 0.606306 | 1.2:-52899840 | MS.gene038087:CDS |
GGATGAGGTAACAGTTGACC+TGG | 0.608537 | 1.2:-52898588 | MS.gene038087:CDS |
CATTTGGCATATATACAAGA+AGG | 0.608932 | 1.2:-52898136 | MS.gene038087:CDS |
AGGACTCGACAACAGACAGC+AGG | 0.618187 | 1.2:+52898056 | None:intergenic |
CCATTCGAGTAACAACATCC+AGG | 0.626459 | 1.2:+52898570 | None:intergenic |
ATCCGTTAGCACCGACGAGG+AGG | 0.628749 | 1.2:+52901587 | None:intergenic |
AAGCTGCGTATCATGAAAAG+CGG | 0.639042 | 1.2:+52901483 | None:intergenic |
TTGAAATCGACGAAGAGCGG+TGG | 0.643066 | 1.2:+52901637 | None:intergenic |
AGAATACATCTAATGCTCAA+GGG | 0.644371 | 1.2:-52897991 | MS.gene038087:CDS |
GATAATGAAGATTCCTCGAG+CGG | 0.647869 | 1.2:-52901712 | MS.gene038087:CDS |
AGGTTGAAATCGACGAAGAG+CGG | 0.661441 | 1.2:+52901634 | None:intergenic |
GATACGCAGCTTGTTTGTAG+TGG | 0.661885 | 1.2:-52901472 | MS.gene038087:CDS |
TGCTTGATATAGATCTGCAG+TGG | 0.665729 | 1.2:-52899468 | MS.gene038087:CDS |
ATCTGGATCTGGGAGAAACG+TGG | 0.670510 | 1.2:+52901611 | None:intergenic |
GAATGCATAAGGTATCCGAT+GGG | 0.681230 | 1.2:-52899444 | MS.gene038087:CDS |
CAGATCCGTTAGCACCGACG+AGG | 0.705355 | 1.2:+52901584 | None:intergenic |
TGGATCTGGGAGAAACGTGG+AGG | 0.718996 | 1.2:+52901614 | None:intergenic |
GCTGAACATATGATATTCGG+TGG | 0.727640 | 1.2:-52899807 | MS.gene038087:intron |
TGTCTGGATGATGAAGAGAA+CGG | 0.762534 | 1.2:+52897950 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | GATAATTATAAATTGAAAAA+TGG | + | chr1.2:52899933-52899952 | None:intergenic | 10.0% |
!! | GTAATAAAAAAAAGTTAATT+TGG | + | chr1.2:52900515-52900534 | None:intergenic | 10.0% |
!! | AACTTATGAATTAACATAAA+CGG | + | chr1.2:52898568-52898587 | None:intergenic | 15.0% |
!! | AATAAATATTGTCCTTAATA+GGG | + | chr1.2:52900001-52900020 | None:intergenic | 15.0% |
!! | TCAATATGATATCTAATTAT+TGG | - | chr1.2:52900928-52900947 | MS.gene038087:intron | 15.0% |
!! | TTTATATAGGTATTAGTAAT+AGG | + | chr1.2:52899266-52899285 | None:intergenic | 15.0% |
!!! | AAAAATTGTCTTTTTTAGTT+AGG | + | chr1.2:52901356-52901375 | None:intergenic | 15.0% |
!!! | ATTTTATGATATACTACTAA+TGG | + | chr1.2:52898728-52898747 | None:intergenic | 15.0% |
!!! | TATGAATATACAATTTTTGT+TGG | + | chr1.2:52898595-52898614 | None:intergenic | 15.0% |
!! | AAAACAAAACCAAACTTTAA+AGG | + | chr1.2:52899535-52899554 | None:intergenic | 20.0% |
!! | AACGACATTAATATTTGAAA+AGG | + | chr1.2:52899798-52899817 | None:intergenic | 20.0% |
!! | AGAAAAAATATCAGATGTTA+AGG | - | chr1.2:52901569-52901588 | MS.gene038087:CDS | 20.0% |
!! | ATAAGCTGAAAATAACTTTA+TGG | - | chr1.2:52898801-52898820 | MS.gene038087:intron | 20.0% |
!! | CAAAAATAAGTTAATCCAAA+CGG | + | chr1.2:52898526-52898545 | None:intergenic | 20.0% |
!! | CAATAAATATTGTCCTTAAT+AGG | + | chr1.2:52900002-52900021 | None:intergenic | 20.0% |
!! | TAAGATAATAGCACAATATT+TGG | + | chr1.2:52900633-52900652 | None:intergenic | 20.0% |
!! | TCAATTCAAAGTAAATACAA+AGG | + | chr1.2:52899364-52899383 | None:intergenic | 20.0% |
!!! | TGTATATTGTGAGTTTTTAT+TGG | + | chr1.2:52900588-52900607 | None:intergenic | 20.0% |
! | AAATAATAAGCCAATCCAAA+CGG | - | chr1.2:52898701-52898720 | MS.gene038087:intron | 25.0% |
! | AAGGTAGTTAATGAAAAAAC+AGG | + | chr1.2:52898619-52898638 | None:intergenic | 25.0% |
! | AATAAGCCGAAAACAAATTA+TGG | - | chr1.2:52898885-52898904 | MS.gene038087:intron | 25.0% |
! | ACTAGAATTCAGATTAAAGA+GGG | + | chr1.2:52900432-52900451 | None:intergenic | 25.0% |
! | AGTATATAAAGTTCAAACTC+AGG | + | chr1.2:52900376-52900395 | None:intergenic | 25.0% |
! | ATTAAGAAGGAATAGAAACA+GGG | + | chr1.2:52899171-52899190 | None:intergenic | 25.0% |
! | GAACTTTATATACTTTATCC+TGG | - | chr1.2:52900382-52900401 | MS.gene038087:intron | 25.0% |
! | GGAAGAGTTATACTTTATAT+AGG | + | chr1.2:52899279-52899298 | None:intergenic | 25.0% |
! | TAAATGTTCCTAAAAAGTGA+GGG | + | chr1.2:52899395-52899414 | None:intergenic | 25.0% |
! | TAAATTTGAGAAAACTGCAA+CGG | - | chr1.2:52901200-52901219 | MS.gene038087:intron | 25.0% |
! | TACTAGAATTCAGATTAAAG+AGG | + | chr1.2:52900433-52900452 | None:intergenic | 25.0% |
! | TTAAATGTTCCTAAAAAGTG+AGG | + | chr1.2:52899396-52899415 | None:intergenic | 25.0% |
! | TTATGACAATTTGTAGACTA+GGG | - | chr1.2:52900792-52900811 | MS.gene038087:intron | 25.0% |
! | TTTAATGTCGTTAGGAAATA+GGG | - | chr1.2:52898297-52898316 | MS.gene038087:intron | 25.0% |
! | TTTATGACAATTTGTAGACT+AGG | - | chr1.2:52900791-52900810 | MS.gene038087:intron | 25.0% |
!! | AAATTTTACGAGACTAAATG+TGG | - | chr1.2:52899438-52899457 | MS.gene038087:CDS | 25.0% |
!! | AATTTTACGAGACTAAATGT+GGG | - | chr1.2:52899439-52899458 | MS.gene038087:CDS | 25.0% |
!! | AGGATGCTTTTCATATATTA+TGG | - | chr1.2:52898476-52898495 | MS.gene038087:intron | 25.0% |
!! | ATCTTGTTTAGTAGATCTTA+TGG | + | chr1.2:52898929-52898948 | None:intergenic | 25.0% |
!! | GGACTGTTTAATAGATTTTA+TGG | + | chr1.2:52898845-52898864 | None:intergenic | 25.0% |
!! | GTTTTCAAATTCTTAAGACA+AGG | - | chr1.2:52899311-52899330 | MS.gene038087:intron | 25.0% |
!! | TGTTTCTATTCCTTCTTAAT+GGG | - | chr1.2:52899171-52899190 | MS.gene038087:intron | 25.0% |
!! | TTGGCTTATTATTTAGCTTA+TGG | + | chr1.2:52898695-52898714 | None:intergenic | 25.0% |
!! | TTTTAATGTCGTTAGGAAAT+AGG | - | chr1.2:52898296-52898315 | MS.gene038087:intron | 25.0% |
!!! | AACATTTAAGGCAAACATTT+TGG | - | chr1.2:52899407-52899426 | MS.gene038087:CDS | 25.0% |
!!! | ACATGTCCATAATTTGTTTT+CGG | + | chr1.2:52898894-52898913 | None:intergenic | 25.0% |
!!! | GATTGATTTCCTTTAAAGTT+TGG | - | chr1.2:52899523-52899542 | MS.gene038087:intron | 25.0% |
!!! | TCACTTTTTAGGAACATTTA+AGG | - | chr1.2:52899395-52899414 | MS.gene038087:intron | 25.0% |
!!! | TTCTCATTTTTAATGTCGTT+AGG | - | chr1.2:52898289-52898308 | MS.gene038087:intron | 25.0% |
AAAGGAATTGATCAAAGCAA+AGG | + | chr1.2:52899780-52899799 | None:intergenic | 30.0% | |
AAATTTGAGAAAACTGCAAC+GGG | - | chr1.2:52901201-52901220 | MS.gene038087:intron | 30.0% | |
AATAATAAGCCAATCCAAAC+GGG | - | chr1.2:52898702-52898721 | MS.gene038087:intron | 30.0% | |
ACACATGTACAAAACATAGT+GGG | - | chr1.2:52899566-52899585 | MS.gene038087:intron | 30.0% | |
AGAATACATCTAATGCTCAA+GGG | - | chr1.2:52901676-52901695 | MS.gene038087:CDS | 30.0% | |
AGAATTAGGACTTGTATGTT+GGG | - | chr1.2:52899007-52899026 | MS.gene038087:intron | 30.0% | |
AGGAAATCAATCTATAGTTC+TGG | + | chr1.2:52899515-52899534 | None:intergenic | 30.0% | |
AGTATAACTCTTCCAAAAGT+AGG | - | chr1.2:52899285-52899304 | MS.gene038087:intron | 30.0% | |
ATAATCTTAGTTTCGAGGAT+AGG | - | chr1.2:52899207-52899226 | MS.gene038087:intron | 30.0% | |
ATAGCACAATATTTGGCTAT+TGG | + | chr1.2:52900626-52900645 | None:intergenic | 30.0% | |
ATTTCAACAAGAATTACTCC+TGG | - | chr1.2:52900892-52900911 | MS.gene038087:intron | 30.0% | |
CAGCTTAATTAAGCATTCTA+GGG | - | chr1.2:52898500-52898519 | MS.gene038087:intron | 30.0% | |
CATTAAGAAGGAATAGAAAC+AGG | + | chr1.2:52899172-52899191 | None:intergenic | 30.0% | |
CATTTGGCATATATACAAGA+AGG | - | chr1.2:52901531-52901550 | MS.gene038087:CDS | 30.0% | |
CCTCGAAACTAAGATTATAT+CGG | + | chr1.2:52899205-52899224 | None:intergenic | 30.0% | |
GATTACGCACTGTAATTTAT+TGG | - | chr1.2:52898445-52898464 | MS.gene038087:intron | 30.0% | |
GGATTTATTGGAATTCTTCA+AGG | - | chr1.2:52901118-52901137 | MS.gene038087:intron | 30.0% | |
GTATAACTCTTCCAAAAGTA+GGG | - | chr1.2:52899286-52899305 | MS.gene038087:intron | 30.0% | |
TAGAATTAGGACTTGTATGT+TGG | - | chr1.2:52899006-52899025 | MS.gene038087:intron | 30.0% | |
TCAATCCATGATACCTTATA+AGG | + | chr1.2:52900288-52900307 | None:intergenic | 30.0% | |
TCTGCTGAACATATGATATT+CGG | - | chr1.2:52899857-52899876 | MS.gene038087:intron | 30.0% | |
TTAGATAGCCAAACATTACA+TGG | + | chr1.2:52900076-52900095 | None:intergenic | 30.0% | |
! | AGCTTGATGATCATAAAACA+CGG | - | chr1.2:52899597-52899616 | MS.gene038087:intron | 30.0% |
! | ATGCAGTAAATTGAAGTGTT+TGG | - | chr1.2:52900744-52900763 | MS.gene038087:intron | 30.0% |
! | ATTCATAATTTTGTGTCGAG+TGG | - | chr1.2:52898357-52898376 | MS.gene038087:intron | 30.0% |
! | TATGCAACTCACATTTTTGA+TGG | - | chr1.2:52901489-52901508 | MS.gene038087:CDS | 30.0% |
! | TGTTACTCGAATGGATTTAT+TGG | - | chr1.2:52901106-52901125 | MS.gene038087:intron | 30.0% |
! | TTAAGCTCTGATAATACGTT+GGG | - | chr1.2:52899077-52899096 | MS.gene038087:intron | 30.0% |
! | TTCATCCTTATAAGGTATCA+TGG | - | chr1.2:52900280-52900299 | MS.gene038087:intron | 30.0% |
! | TTTAAGCTCTGATAATACGT+TGG | - | chr1.2:52899076-52899095 | MS.gene038087:intron | 30.0% |
!! | CTGTTTCTATTCCTTCTTAA+TGG | - | chr1.2:52899170-52899189 | MS.gene038087:intron | 30.0% |
!! | CTTAGTTTTTCTATGCATCA+GGG | + | chr1.2:52900116-52900135 | None:intergenic | 30.0% |
!! | GGATCTTTTATTTCGAGAAA+AGG | + | chr1.2:52900411-52900430 | None:intergenic | 30.0% |
!! | TCTTAGTTTTTCTATGCATC+AGG | + | chr1.2:52900117-52900136 | None:intergenic | 30.0% |
!! | TCTTTTATTTCGAGAAAAGG+TGG | + | chr1.2:52900408-52900427 | None:intergenic | 30.0% |
!!! | AAAAAGAGCTTTTAGCTTGA+TGG | - | chr1.2:52900822-52900841 | MS.gene038087:intron | 30.0% |
AAACTAGTCATACCATAGCA+TGG | - | chr1.2:52899960-52899979 | MS.gene038087:intron | 35.0% | |
AAATACGTATAGAGTCTGCT+TGG | + | chr1.2:52898967-52898986 | None:intergenic | 35.0% | |
AACTACGTTGTTGAAGATTC+TGG | - | chr1.2:52898110-52898129 | MS.gene038087:CDS | 35.0% | |
AAGCAGACTCTATACGTATT+TGG | - | chr1.2:52898966-52898985 | MS.gene038087:intron | 35.0% | |
AGAAAGCTACTAGAGATCTA+AGG | + | chr1.2:52899638-52899657 | None:intergenic | 35.0% | |
AGCATACAAATATACAGAGC+TGG | + | chr1.2:52901165-52901184 | None:intergenic | 35.0% | |
AGCTCTATCTTGGAAATTGA+TGG | - | chr1.2:52898776-52898795 | MS.gene038087:intron | 35.0% | |
AGTGGTGATCTTGCTTATTT+GGG | - | chr1.2:52898213-52898232 | MS.gene038087:intron | 35.0% | |
AGTTGATCCTAGTTGGAAAT+AGG | - | chr1.2:52901250-52901269 | MS.gene038087:intron | 35.0% | |
ATATACAAGAAGGCGAATTG+AGG | - | chr1.2:52901541-52901560 | MS.gene038087:CDS | 35.0% | |
ATGTGGTAGTTATGTTGTTG+TGG | - | chr1.2:52900326-52900345 | MS.gene038087:intron | 35.0% | |
CACACATGTACAAAACATAG+TGG | - | chr1.2:52899565-52899584 | MS.gene038087:intron | 35.0% | |
CAGAATACATCTAATGCTCA+AGG | - | chr1.2:52901675-52901694 | MS.gene038087:CDS | 35.0% | |
CCAGCTTAATTAAGCATTCT+AGG | - | chr1.2:52898499-52898518 | MS.gene038087:intron | 35.0% | |
CCGATATAATCTTAGTTTCG+AGG | - | chr1.2:52899202-52899221 | MS.gene038087:intron | 35.0% | |
CCTAGAATGCTTAATTAAGC+TGG | + | chr1.2:52898502-52898521 | None:intergenic | 35.0% | |
CCTTAATAGGGTTTCATTGA+AGG | + | chr1.2:52899989-52900008 | None:intergenic | 35.0% | |
CCTTCAATGAAACCCTATTA+AGG | - | chr1.2:52899986-52900005 | MS.gene038087:intron | 35.0% | |
CTTGAGCATTAGATGTATTC+TGG | + | chr1.2:52901677-52901696 | None:intergenic | 35.0% | |
GAAAGCTACTAGAGATCTAA+GGG | + | chr1.2:52899637-52899656 | None:intergenic | 35.0% | |
GAGTGGTTAAAATGAAATGC+TGG | - | chr1.2:52898374-52898393 | MS.gene038087:intron | 35.0% | |
GGTAAAAACTCCCATTAAGA+AGG | + | chr1.2:52899184-52899203 | None:intergenic | 35.0% | |
GTAGCTTCTCTCTACAAAAA+AGG | + | chr1.2:52901462-52901481 | None:intergenic | 35.0% | |
GTTGATCCTAGTTGGAAATA+GGG | - | chr1.2:52901251-52901270 | MS.gene038087:intron | 35.0% | |
TAACTACCTTGACAAGCTTA+TGG | - | chr1.2:52898629-52898648 | MS.gene038087:intron | 35.0% | |
TAGTGGTGATCTTGCTTATT+TGG | - | chr1.2:52898212-52898231 | MS.gene038087:intron | 35.0% | |
TCTGGCTAAGAGAACATAAA+GGG | + | chr1.2:52899497-52899516 | None:intergenic | 35.0% | |
TTCCAAGATAGAGCTACTTA+TGG | + | chr1.2:52898771-52898790 | None:intergenic | 35.0% | |
TTTAGTTAGGATTCATGAGC+AGG | + | chr1.2:52901343-52901362 | None:intergenic | 35.0% | |
! | AACATATGATATTCGGTGGT+GGG | - | chr1.2:52899864-52899883 | MS.gene038087:intron | 35.0% |
! | AACCATAAGTAGCTCTATCT+TGG | - | chr1.2:52898766-52898785 | MS.gene038087:intron | 35.0% |
! | ACTATCATCCTGTTTTGCAT+TGG | + | chr1.2:52901233-52901252 | None:intergenic | 35.0% |
! | ATCATGGATTGAATAGCCTA+AGG | - | chr1.2:52900296-52900315 | MS.gene038087:intron | 35.0% |
! | ATTTTGCCATAAGCTTGTCA+AGG | + | chr1.2:52898638-52898657 | None:intergenic | 35.0% |
! | CACTATGTTTTGTACATGTG+TGG | + | chr1.2:52899567-52899586 | None:intergenic | 35.0% |
! | CTATCATCCTGTTTTGCATT+GGG | + | chr1.2:52901232-52901251 | None:intergenic | 35.0% |
! | CTTTTACCCTATTTCCAACT+AGG | + | chr1.2:52901260-52901279 | None:intergenic | 35.0% |
! | GTAATTTATTGGTGACTGTG+AGG | - | chr1.2:52898456-52898475 | MS.gene038087:intron | 35.0% |
! | TAGCTGAGATTTTGTGTTTG+TGG | - | chr1.2:52899700-52899719 | MS.gene038087:intron | 35.0% |
! | TATCATCCTGTTTTGCATTG+GGG | + | chr1.2:52901231-52901250 | None:intergenic | 35.0% |
! | TTCTGGCTAAGAGAACATAA+AGG | + | chr1.2:52899498-52899517 | None:intergenic | 35.0% |
! | TTGATGATCATAAAACACGG+TGG | - | chr1.2:52899600-52899619 | MS.gene038087:intron | 35.0% |
! | TTTGAAAACCACCCTACTTT+TGG | + | chr1.2:52899300-52899319 | None:intergenic | 35.0% |
!! | AACTCACATTTTTGATGGAC+TGG | - | chr1.2:52901494-52901513 | MS.gene038087:CDS | 35.0% |
!! | AATTCTAAAGTGTGCAAGCA+TGG | + | chr1.2:52898993-52899012 | None:intergenic | 35.0% |
!! | TGCTTGCACACTTTAGAATT+AGG | - | chr1.2:52898993-52899012 | MS.gene038087:intron | 35.0% |
!! | TTTCAAGCTTTGTTTCAGCA+CGG | + | chr1.2:52901641-52901660 | None:intergenic | 35.0% |
!!! | TTATGTTGCCCTCACTTTTT+AGG | - | chr1.2:52899384-52899403 | MS.gene038087:intron | 35.0% |
AAACCTCATACACTAAGTGC+TGG | + | chr1.2:52899058-52899077 | None:intergenic | 40.0% | |
AAGCTGCGTATCATGAAAAG+CGG | + | chr1.2:52898187-52898206 | None:intergenic | 40.0% | |
AAGGAATAGAAACAGGGTCA+AGG | + | chr1.2:52899165-52899184 | None:intergenic | 40.0% | |
ACTGTAGTGTAACCCTTGAT+TGG | - | chr1.2:52901037-52901056 | MS.gene038087:intron | 40.0% | |
AGAACCTGAAATGCCAATCA+AGG | + | chr1.2:52901053-52901072 | None:intergenic | 40.0% | |
AGGAATAGAAACAGGGTCAA+GGG | + | chr1.2:52899164-52899183 | None:intergenic | 40.0% | |
ATGTTGTTGTGGACAATGTC+AGG | - | chr1.2:52900337-52900356 | MS.gene038087:intron | 40.0% | |
ATTGAACATCTGCTTACTCC+AGG | + | chr1.2:52900913-52900932 | None:intergenic | 40.0% | |
CTACCACATGCAAATTCCTT+AGG | + | chr1.2:52900315-52900334 | None:intergenic | 40.0% | |
CTGATAATACGTTGGGACTT+GGG | - | chr1.2:52899084-52899103 | MS.gene038087:intron | 40.0% | |
GAACCTGAAATGCCAATCAA+GGG | + | chr1.2:52901052-52901071 | None:intergenic | 40.0% | |
GATAATGAAGATTCCTCGAG+CGG | - | chr1.2:52897955-52897974 | MS.gene038087:CDS | 40.0% | |
GCATTAGATGTATTCTGGAC+AGG | + | chr1.2:52901672-52901691 | None:intergenic | 40.0% | |
GCTGAACATATGATATTCGG+TGG | - | chr1.2:52899860-52899879 | MS.gene038087:intron | 40.0% | |
GGATCTTGGAGTAAAAACGT+TGG | - | chr1.2:52898237-52898256 | MS.gene038087:intron | 40.0% | |
GGATGATAGTTGATCCTAGT+TGG | - | chr1.2:52901243-52901262 | MS.gene038087:intron | 40.0% | |
GGGTCTTCTTCATCCTTATA+AGG | - | chr1.2:52900272-52900291 | MS.gene038087:intron | 40.0% | |
TAACCCTTGATTGGCATTTC+AGG | - | chr1.2:52901046-52901065 | MS.gene038087:intron | 40.0% | |
TAACTCTTCCAAAAGTAGGG+TGG | - | chr1.2:52899289-52899308 | MS.gene038087:intron | 40.0% | |
TAGCCTAAGGAATTTGCATG+TGG | - | chr1.2:52900309-52900328 | MS.gene038087:intron | 40.0% | |
TAGGATTCATGAGCAGGTTA+TGG | + | chr1.2:52901337-52901356 | None:intergenic | 40.0% | |
TATACTACTAATGGCCCGTT+TGG | + | chr1.2:52898719-52898738 | None:intergenic | 40.0% | |
TCTGATAATACGTTGGGACT+TGG | - | chr1.2:52899083-52899102 | MS.gene038087:intron | 40.0% | |
TGCAGGTTCCATGTAATGTT+TGG | - | chr1.2:52900065-52900084 | MS.gene038087:intron | 40.0% | |
TGCTTGATATAGATCTGCAG+TGG | - | chr1.2:52900199-52900218 | MS.gene038087:intron | 40.0% | |
TGTAGGAGAATTGCATTCCT+TGG | + | chr1.2:52897990-52898009 | None:intergenic | 40.0% | |
TGTCGTTAGGAAATAGGGTT+AGG | - | chr1.2:52898302-52898321 | MS.gene038087:intron | 40.0% | |
TGTCTGGATGATGAAGAGAA+CGG | + | chr1.2:52901720-52901739 | None:intergenic | 40.0% | |
TGTTGTTGTGGACAATGTCA+GGG | - | chr1.2:52900338-52900357 | MS.gene038087:intron | 40.0% | |
TTCATATAACCAACCCCACT+AGG | + | chr1.2:52901304-52901323 | None:intergenic | 40.0% | |
TTCCTAGCATAAGCACTAGT+GGG | + | chr1.2:52898866-52898885 | None:intergenic | 40.0% | |
TTGCTTATTTGGGTGGATCT+TGG | - | chr1.2:52898223-52898242 | MS.gene038087:intron | 40.0% | |
TTTCCTAGCATAAGCACTAG+TGG | + | chr1.2:52898867-52898886 | None:intergenic | 40.0% | |
! | AATGTCGTTGCTGTTATCCA+GGG | - | chr1.2:52899809-52899828 | MS.gene038087:CDS | 40.0% |
! | GAACATATGATATTCGGTGG+TGG | - | chr1.2:52899863-52899882 | MS.gene038087:intron | 40.0% |
! | GAATGCATAAGGTATCCGAT+GGG | - | chr1.2:52900223-52900242 | MS.gene038087:intron | 40.0% |
! | TAAGCCTTTTTCCACCTAGT+GGG | - | chr1.2:52901287-52901306 | MS.gene038087:intron | 40.0% |
! | TAATGTCGTTGCTGTTATCC+AGG | - | chr1.2:52899808-52899827 | MS.gene038087:CDS | 40.0% |
! | TATATACAAGCGTTGCATGC+AGG | - | chr1.2:52900048-52900067 | MS.gene038087:intron | 40.0% |
! | TTGTTGTTGGATGTCGTTGT+AGG | + | chr1.2:52898007-52898026 | None:intergenic | 40.0% |
!! | CTTCTGCTTTTGACAGTTGA+AGG | - | chr1.2:52900141-52900160 | MS.gene038087:intron | 40.0% |
!!! | GGTTTCGCTTTTTTCGCATT+CGG | - | chr1.2:52898323-52898342 | MS.gene038087:intron | 40.0% |
!!! | TTTTGATGGACTGGAGACAT+GGG | - | chr1.2:52901503-52901522 | MS.gene038087:CDS | 40.0% |
!!! | TTTTTGATGGACTGGAGACA+TGG | - | chr1.2:52901502-52901521 | MS.gene038087:CDS | 40.0% |
ACGTTGTTGAAGATTCTGGC+TGG | - | chr1.2:52898114-52898133 | MS.gene038087:CDS | 45.0% | |
AGGTTGAAATCGACGAAGAG+CGG | + | chr1.2:52898036-52898055 | None:intergenic | 45.0% | |
ATATAACCAACCCCACTAGG+TGG | + | chr1.2:52901301-52901320 | None:intergenic | 45.0% | |
ATCAACTTGTCTCTCCTGTC+AGG | + | chr1.2:52900174-52900193 | None:intergenic | 45.0% | |
CAACCAGCACTTAGTGTATG+AGG | - | chr1.2:52899052-52899071 | MS.gene038087:intron | 45.0% | |
CATTGAAGGACTCCATGCTA+TGG | + | chr1.2:52899975-52899994 | None:intergenic | 45.0% | |
CCATTCGAGTAACAACATCC+AGG | + | chr1.2:52901100-52901119 | None:intergenic | 45.0% | |
CCTGGATGTTGTTACTCGAA+TGG | - | chr1.2:52901097-52901116 | MS.gene038087:intron | 45.0% | |
CGTCGAGTGCAAATCTGTTT+GGG | - | chr1.2:52900252-52900271 | MS.gene038087:intron | 45.0% | |
CTCTTCATCATCCAGACACA+TGG | - | chr1.2:52901722-52901741 | MS.gene038087:CDS | 45.0% | |
CTTCAAGGAAGAATGTGAGC+AGG | - | chr1.2:52901133-52901152 | MS.gene038087:intron | 45.0% | |
GGTGATCTTGCTTATTTGGG+TGG | - | chr1.2:52898216-52898235 | MS.gene038087:intron | 45.0% | |
TACTAATGGCCCGTTTGGAT+TGG | + | chr1.2:52898714-52898733 | None:intergenic | 45.0% | |
TATTTCGAGAAAAGGTGGCC+AGG | + | chr1.2:52900403-52900422 | None:intergenic | 45.0% | |
TCGATAGTATGCCATGTGTC+TGG | + | chr1.2:52901736-52901755 | None:intergenic | 45.0% | |
! | AAGCCTTTTTCCACCTAGTG+GGG | - | chr1.2:52901288-52901307 | MS.gene038087:intron | 45.0% |
! | CGAATGCATAAGGTATCCGA+TGG | - | chr1.2:52900222-52900241 | MS.gene038087:intron | 45.0% |
! | CGTTGTTGAAGATTCTGGCT+GGG | - | chr1.2:52898115-52898134 | MS.gene038087:CDS | 45.0% |
! | CTAAGCCTTTTTCCACCTAG+TGG | - | chr1.2:52901286-52901305 | MS.gene038087:intron | 45.0% |
! | GATACGCAGCTTGTTTGTAG+TGG | - | chr1.2:52898195-52898214 | MS.gene038087:CDS | 45.0% |
!! | CTCATACACTAAGTGCTGGT+TGG | + | chr1.2:52899054-52899073 | None:intergenic | 45.0% |
!! | TTAAGCATTCTAGGGCCGTT+TGG | - | chr1.2:52898508-52898527 | MS.gene038087:intron | 45.0% |
!! | TTGAAGGTGTTGATCCTGAC+AGG | - | chr1.2:52900157-52900176 | MS.gene038087:intron | 45.0% |
AGACAAGGTCTTCTGCAGCA+TGG | - | chr1.2:52899326-52899345 | MS.gene038087:intron | 50.0% | |
AGAGATCTAAGGGTCCGAAG+TGG | + | chr1.2:52899627-52899646 | None:intergenic | 50.0% | |
ATCTGGATCTGGGAGAAACG+TGG | + | chr1.2:52898059-52898078 | None:intergenic | 50.0% | |
CAACCCCACTAGGTGGAAAA+AGG | + | chr1.2:52901294-52901313 | None:intergenic | 50.0% | |
CTGCAGCATGGGTGAATGTT+AGG | - | chr1.2:52899338-52899357 | MS.gene038087:intron | 50.0% | |
GACAAGGTCTTCTGCAGCAT+GGG | - | chr1.2:52899327-52899346 | MS.gene038087:intron | 50.0% | |
GAGATCTAAGGGTCCGAAGT+GGG | + | chr1.2:52899626-52899645 | None:intergenic | 50.0% | |
GATCAAAGCAAAGGCAGCAC+AGG | + | chr1.2:52899771-52899790 | None:intergenic | 50.0% | |
GCGTCGAGTGCAAATCTGTT+TGG | - | chr1.2:52900251-52900270 | MS.gene038087:intron | 50.0% | |
GGAGACATGGGCAACTCATT+TGG | - | chr1.2:52901515-52901534 | MS.gene038087:CDS | 50.0% | |
GGATGAGGTAACAGTTGACC+TGG | - | chr1.2:52901079-52901098 | MS.gene038087:intron | 50.0% | |
GGATGTCCCCAATGCAAAAC+AGG | - | chr1.2:52901222-52901241 | MS.gene038087:intron | 50.0% | |
GTCCCACTAGTGCTTATGCT+AGG | - | chr1.2:52898861-52898880 | MS.gene038087:intron | 50.0% | |
TAAAACACGGTGGCCCACTT+CGG | - | chr1.2:52899610-52899629 | MS.gene038087:intron | 50.0% | |
TCAGGTTCTCTTGCTGGATG+AGG | - | chr1.2:52901064-52901083 | MS.gene038087:intron | 50.0% | |
TCTGCAGTGGCGAATGCATA+AGG | - | chr1.2:52900212-52900231 | MS.gene038087:intron | 50.0% | |
TTGAAATCGACGAAGAGCGG+TGG | + | chr1.2:52898033-52898052 | None:intergenic | 50.0% | |
! | AGAGCGGTGGTTGTTGTTGT+TGG | + | chr1.2:52898020-52898039 | None:intergenic | 50.0% |
! | AGGAGTCAGGGTGCAGTTTT+AGG | + | chr1.2:52899740-52899759 | None:intergenic | 50.0% |
! | ATAAGGTATCCGATGGGCAG+CGG | - | chr1.2:52900229-52900248 | MS.gene038087:intron | 50.0% |
! | CTTTTTCCACCTAGTGGGGT+TGG | - | chr1.2:52901292-52901311 | MS.gene038087:intron | 50.0% |
! | GATTCTGGCTGGGAAGCATA+TGG | - | chr1.2:52898125-52898144 | MS.gene038087:CDS | 50.0% |
!! | GGCATTTCAGGTTCTCTTGC+TGG | - | chr1.2:52901058-52901077 | MS.gene038087:intron | 50.0% |
ACAGGTTAGCAGGAGGAGTC+AGG | + | chr1.2:52899753-52899772 | None:intergenic | 55.0% | |
AGATCCAGATGCCTCCTCGT+CGG | - | chr1.2:52898069-52898088 | MS.gene038087:CDS | 55.0% | |
AGGACTCGACAACAGACAGC+AGG | + | chr1.2:52901614-52901633 | None:intergenic | 55.0% | |
CAAAGGCAGCACAGGTTAGC+AGG | + | chr1.2:52899763-52899782 | None:intergenic | 55.0% | |
CAGGGAGACATTCCACTGCA+GGG | - | chr1.2:52899827-52899846 | MS.gene038087:CDS | 55.0% | |
CAGGTTAGCAGGAGGAGTCA+GGG | + | chr1.2:52899752-52899771 | None:intergenic | 55.0% | |
TCGAGCGGAATCAGAGTCCA+AGG | - | chr1.2:52897970-52897989 | MS.gene038087:CDS | 55.0% | |
TGCTGTCTGTTGTCGAGTCC+TGG | - | chr1.2:52901613-52901632 | MS.gene038087:CDS | 55.0% | |
TGGATCTGGGAGAAACGTGG+AGG | + | chr1.2:52898056-52898075 | None:intergenic | 55.0% | |
TTGGACTCTGATTCCGCTCG+AGG | + | chr1.2:52897971-52897990 | None:intergenic | 55.0% | |
! | CTGGCTGGGAAGCATATGGT+TGG | - | chr1.2:52898129-52898148 | MS.gene038087:CDS | 55.0% |
! | CTTTGTTTCAGCACGGAGCC+AGG | + | chr1.2:52901634-52901653 | None:intergenic | 55.0% |
! | GCTGGGAAGCATATGGTTGG+AGG | - | chr1.2:52898132-52898151 | MS.gene038087:CDS | 55.0% |
!! | ACGAGGAGGCATCTGGATCT+GGG | + | chr1.2:52898069-52898088 | None:intergenic | 55.0% |
AGGCAGCACAGGTTAGCAGG+AGG | + | chr1.2:52899760-52899779 | None:intergenic | 60.0% | |
CCAGGGAGACATTCCACTGC+AGG | - | chr1.2:52899826-52899845 | MS.gene038087:CDS | 60.0% | |
CCTGCAGTGGAATGTCTCCC+TGG | + | chr1.2:52899829-52899848 | None:intergenic | 60.0% | |
GCAGAGAAGTCTCCCTGCAG+TGG | + | chr1.2:52899842-52899861 | None:intergenic | 60.0% | |
!! | ATCCGTTAGCACCGACGAGG+AGG | + | chr1.2:52898083-52898102 | None:intergenic | 60.0% |
!! | CAGATCCGTTAGCACCGACG+AGG | + | chr1.2:52898086-52898105 | None:intergenic | 60.0% |
!! | CTCGTCGGTGCTAACGGATC+TGG | - | chr1.2:52898084-52898103 | MS.gene038087:CDS | 60.0% |
!! | GACGAGGAGGCATCTGGATC+TGG | + | chr1.2:52898070-52898089 | None:intergenic | 60.0% |
!! | TGCCTCCTCGTCGGTGCTAA+CGG | - | chr1.2:52898078-52898097 | MS.gene038087:CDS | 60.0% |
!! | AGCACCGACGAGGAGGCATC+TGG | + | chr1.2:52898076-52898095 | None:intergenic | 65.0% |
CACTCGACGCCGCTGCCCAT+CGG | + | chr1.2:52900241-52900260 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.2 | gene | 52897931 | 52901758 | 52897931 | ID=MS.gene038087 |
chr1.2 | mRNA | 52897931 | 52901758 | 52897931 | ID=MS.gene038087.t1;Parent=MS.gene038087 |
chr1.2 | exon | 52901423 | 52901758 | 52901423 | ID=MS.gene038087.t1.exon1;Parent=MS.gene038087.t1 |
chr1.2 | CDS | 52901423 | 52901758 | 52901423 | ID=cds.MS.gene038087.t1;Parent=MS.gene038087.t1 |
chr1.2 | exon | 52899808 | 52899859 | 52899808 | ID=MS.gene038087.t1.exon2;Parent=MS.gene038087.t1 |
chr1.2 | CDS | 52899808 | 52899859 | 52899808 | ID=cds.MS.gene038087.t1;Parent=MS.gene038087.t1 |
chr1.2 | exon | 52899396 | 52899532 | 52899396 | ID=MS.gene038087.t1.exon3;Parent=MS.gene038087.t1 |
chr1.2 | CDS | 52899396 | 52899532 | 52899396 | ID=cds.MS.gene038087.t1;Parent=MS.gene038087.t1 |
chr1.2 | exon | 52898535 | 52898621 | 52898535 | ID=MS.gene038087.t1.exon4;Parent=MS.gene038087.t1 |
chr1.2 | CDS | 52898535 | 52898621 | 52898535 | ID=cds.MS.gene038087.t1;Parent=MS.gene038087.t1 |
chr1.2 | exon | 52897931 | 52898218 | 52897931 | ID=MS.gene038087.t1.exon5;Parent=MS.gene038087.t1 |
chr1.2 | CDS | 52897931 | 52898218 | 52897931 | ID=cds.MS.gene038087.t1;Parent=MS.gene038087.t1 |
Gene Sequence |
Protein sequence |