Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene89583.t1 | XP_013468466.1 | 97 | 299 | 9 | 0 | 1 | 299 | 1 | 299 | 9.10E-163 | 582.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene89583.t1 | Q3EDJ0 | 74.3 | 296 | 66 | 4 | 6 | 299 | 3 | 290 | 5.3e-119 | 428.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene89583.t1 | A0A072VM53 | 97.0 | 299 | 9 | 0 | 1 | 299 | 1 | 299 | 6.6e-163 | 582.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene89583 | MS.gene23961 | PPI |
MS.gene89583 | MS.gene038087 | PPI |
MS.gene23961 | MS.gene89583 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene89583.t1 | MTR_1g069750 | 96.990 | 299 | 9 | 0 | 1 | 299 | 1 | 299 | 0.0 | 607 |
MS.gene89583.t1 | MTR_1g084720 | 55.805 | 267 | 110 | 5 | 10 | 270 | 6 | 270 | 3.01e-101 | 300 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene89583.t1 | AT1G03905 | 76.761 | 284 | 60 | 3 | 16 | 299 | 13 | 290 | 2.31e-155 | 436 |
MS.gene89583.t1 | AT5G44110 | 73.038 | 293 | 65 | 4 | 8 | 299 | 3 | 282 | 1.52e-150 | 423 |
MS.gene89583.t1 | AT1G03905 | 78.509 | 228 | 47 | 2 | 72 | 299 | 1 | 226 | 9.54e-126 | 358 |
MS.gene89583.t1 | AT1G03905 | 78.509 | 228 | 47 | 2 | 72 | 299 | 1 | 226 | 9.54e-126 | 358 |
MS.gene89583.t1 | AT1G03905 | 78.509 | 228 | 47 | 2 | 72 | 299 | 1 | 226 | 9.54e-126 | 358 |
MS.gene89583.t1 | AT5G44110 | 77.033 | 209 | 43 | 2 | 8 | 215 | 3 | 207 | 2.52e-114 | 328 |
MS.gene89583.t1 | AT5G02270 | 58.140 | 258 | 101 | 4 | 8 | 260 | 5 | 260 | 1.17e-104 | 308 |
MS.gene89583.t1 | AT5G02270 | 53.169 | 284 | 100 | 5 | 8 | 260 | 5 | 286 | 1.32e-98 | 294 |
MS.gene89583.t1 | AT5G44110 | 78.571 | 168 | 31 | 2 | 8 | 174 | 3 | 166 | 1.26e-91 | 271 |
MS.gene89583.t1 | AT5G44110 | 81.250 | 144 | 27 | 0 | 72 | 215 | 1 | 144 | 1.30e-83 | 248 |
Find 70 sgRNAs with CRISPR-Local
Find 244 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TAGTGGTGATCTTGCTTATT+TGG | 0.198378 | 1.1:-51676520 | MS.gene89583:CDS |
CTTGAGCATTAGATGTATTC+TGG | 0.205818 | 1.1:+51673076 | None:intergenic |
TGTTACTCGAATGGATTTAT+TGG | 0.213870 | 1.1:-51673644 | MS.gene89583:CDS |
GGCATTTCAGGTTCTCTTGC+TGG | 0.245341 | 1.1:-51673692 | MS.gene89583:intron |
AACTACGTTGTTGAAGATTC+TGG | 0.281207 | 1.1:-51676622 | MS.gene89583:CDS |
TTGCTTATTTGGGTGGATCT+TGG | 0.297721 | 1.1:-51676509 | MS.gene89583:CDS |
TCAATCCATGATACCTTATA+AGG | 0.305162 | 1.1:+51674463 | None:intergenic |
GGGTCTTCTTCATCCTTATA+AGG | 0.319104 | 1.1:-51674476 | MS.gene89583:intron |
AGTGGTGATCTTGCTTATTT+GGG | 0.367794 | 1.1:-51676519 | MS.gene89583:CDS |
GACGAGGAGGCATCTGGATC+CGG | 0.373648 | 1.1:+51676665 | None:intergenic |
TGCTGTCTGTTGTCGAGTCC+TGG | 0.392760 | 1.1:-51673137 | MS.gene89583:CDS |
GCGTCGAGTGCAAATCTGTT+TGG | 0.394075 | 1.1:-51674497 | MS.gene89583:CDS |
GGAGACATGGGCAACTCATT+TGG | 0.399798 | 1.1:-51673235 | MS.gene89583:CDS |
TTGTTGTTGGATGTCGTTGT+AGG | 0.412895 | 1.1:+51676728 | None:intergenic |
TCTGCTGAACATATGATATT+CGG | 0.419547 | 1.1:-51674891 | MS.gene89583:CDS |
TTCAACCTCCACGTTTCTCC+CGG | 0.419734 | 1.1:-51676684 | MS.gene89583:CDS |
AGAGCGGTGGTTGTTGTTGT+TGG | 0.426946 | 1.1:+51676715 | None:intergenic |
CGTCGAGTGCAAATCTGTTT+GGG | 0.431328 | 1.1:-51674496 | MS.gene89583:CDS |
TGTAGGAGAATTGCATTCCT+TGG | 0.435035 | 1.1:+51676745 | None:intergenic |
ATCAACTTGTCTCTCCTGTC+AGG | 0.438091 | 1.1:+51674577 | None:intergenic |
CTTTGTTTCAGCACGGAGCC+AGG | 0.439414 | 1.1:+51673119 | None:intergenic |
AGCACCGACGAGGAGGCATC+TGG | 0.446647 | 1.1:+51676659 | None:intergenic |
CTCGTCGGTGCTAACGGATC+TGG | 0.449071 | 1.1:-51676648 | MS.gene89583:CDS |
CACTCGACGCCGCTGCCCAT+CGG | 0.468540 | 1.1:+51674510 | None:intergenic |
TCGATAGTATGCCATGTGTC+TGG | 0.475819 | 1.1:+51673017 | None:intergenic |
GCATTAGATGTATTCTGGAC+AGG | 0.480572 | 1.1:+51673081 | None:intergenic |
GGATTTATTGGAATTCTTCA+AGG | 0.489781 | 1.1:-51673632 | MS.gene89583:CDS |
TCAGGTTCTCTTGCTGGATG+AGG | 0.494180 | 1.1:-51673686 | MS.gene89583:intron |
TGCCTCCTCGTCGGTGCTAA+CGG | 0.499231 | 1.1:-51676654 | MS.gene89583:CDS |
TCTGCAGTGGCGAATGCATA+AGG | 0.499282 | 1.1:-51674536 | MS.gene89583:CDS |
CCAGGGAGACATTCCACTGC+AGG | 0.508285 | 1.1:-51674922 | MS.gene89583:intron |
TTGGACTCTGATTCCGCTCG+AGG | 0.511444 | 1.1:+51676764 | None:intergenic |
ACGAGGAGGCATCTGGATCC+GGG | 0.515626 | 1.1:+51676666 | None:intergenic |
CAGAATACATCTAATGCTCA+AGG | 0.515770 | 1.1:-51673075 | MS.gene89583:CDS |
ACGTTGTTGAAGATTCTGGC+TGG | 0.524614 | 1.1:-51676618 | MS.gene89583:CDS |
CCTGGATGTTGTTACTCGAA+TGG | 0.526845 | 1.1:-51673653 | MS.gene89583:CDS |
GGTGATCTTGCTTATTTGGG+TGG | 0.528094 | 1.1:-51676516 | MS.gene89583:CDS |
TTGAAGGTGTTGATCCTGAC+AGG | 0.537915 | 1.1:-51674591 | MS.gene89583:CDS |
CGTTGTTGAAGATTCTGGCT+GGG | 0.548568 | 1.1:-51676617 | MS.gene89583:CDS |
GATTCTGGCTGGGAAGCATA+TGG | 0.548571 | 1.1:-51676607 | MS.gene89583:CDS |
GCTGGGAAGCATATGGTTGG+AGG | 0.550659 | 1.1:-51676600 | MS.gene89583:CDS |
CGAATGCATAAGGTATCCGA+TGG | 0.557234 | 1.1:-51674526 | MS.gene89583:CDS |
ATATACAAGAAGGCGAATTG+AGG | 0.569400 | 1.1:-51673209 | MS.gene89583:CDS |
CTTCAAGGAAGAATGTGAGC+AGG | 0.571124 | 1.1:-51673617 | MS.gene89583:intron |
CTCTTCATCATCCAGACACA+TGG | 0.583208 | 1.1:-51673028 | MS.gene89583:CDS |
GCAGAGAAGTCTCCCTGCAG+TGG | 0.587594 | 1.1:+51674909 | None:intergenic |
TCGAGCGGAATCAGAGTCCA+AGG | 0.594046 | 1.1:-51676762 | MS.gene89583:CDS |
TTTCAAGCTTTGTTTCAGCA+CGG | 0.594104 | 1.1:+51673112 | None:intergenic |
ATAAGGTATCCGATGGGCAG+CGG | 0.595876 | 1.1:-51674519 | MS.gene89583:CDS |
CTGGCTGGGAAGCATATGGT+TGG | 0.597197 | 1.1:-51676603 | MS.gene89583:CDS |
CAGGGAGACATTCCACTGCA+GGG | 0.606306 | 1.1:-51674921 | MS.gene89583:CDS |
GGATGAGGTAACAGTTGACC+TGG | 0.608537 | 1.1:-51673671 | MS.gene89583:CDS |
CATTTGGCATATATACAAGA+AGG | 0.608932 | 1.1:-51673219 | MS.gene89583:CDS |
GGATCCAGATGCCTCCTCGT+CGG | 0.614264 | 1.1:-51676663 | MS.gene89583:CDS |
AGGACTCGACAACAGACAGC+AGG | 0.618187 | 1.1:+51673139 | None:intergenic |
CCATTCGAGTAACAACATCC+AGG | 0.626459 | 1.1:+51673653 | None:intergenic |
ATCCGTTAGCACCGACGAGG+AGG | 0.628749 | 1.1:+51676652 | None:intergenic |
AAGCTGCGTATCATGAAAAG+CGG | 0.639042 | 1.1:+51676548 | None:intergenic |
TTGAAATCGACGAAGAGCGG+TGG | 0.643066 | 1.1:+51676702 | None:intergenic |
AGAATACATCTAATGCTCAA+GGG | 0.644371 | 1.1:-51673074 | MS.gene89583:CDS |
ATCTGGATCCGGGAGAAACG+TGG | 0.646214 | 1.1:+51676676 | None:intergenic |
GATAATGAAGATTCCTCGAG+CGG | 0.647869 | 1.1:-51676777 | MS.gene89583:CDS |
AGGTTGAAATCGACGAAGAG+CGG | 0.661441 | 1.1:+51676699 | None:intergenic |
GATACGCAGCTTGTTTGTAG+TGG | 0.661885 | 1.1:-51676537 | MS.gene89583:CDS |
TGCTTGATATAGATCTGCAG+TGG | 0.665729 | 1.1:-51674549 | MS.gene89583:CDS |
GAATGCATAAGGTATCCGAT+GGG | 0.681230 | 1.1:-51674525 | MS.gene89583:CDS |
CAGATCCGTTAGCACCGACG+AGG | 0.705355 | 1.1:+51676649 | None:intergenic |
TGGATCCGGGAGAAACGTGG+AGG | 0.721479 | 1.1:+51676679 | None:intergenic |
GCTGAACATATGATATTCGG+TGG | 0.727640 | 1.1:-51674888 | MS.gene89583:intron |
TGTCTGGATGATGAAGAGAA+CGG | 0.762534 | 1.1:+51673033 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | GATAATTATAAATTGAAAAA+TGG | + | chr1.1:51675000-51675019 | None:intergenic | 10.0% |
!! | GTAATAAAAAAAAGTTAATT+TGG | + | chr1.1:51675580-51675599 | None:intergenic | 10.0% |
!! | AACTTATGAATTAACATAAA+CGG | + | chr1.1:51673635-51673654 | None:intergenic | 15.0% |
!! | AATAAATATTGTCCTTAATA+GGG | + | chr1.1:51675068-51675087 | None:intergenic | 15.0% |
!! | TCAATATGATATCTAATTAT+TGG | - | chr1.1:51675993-51676012 | MS.gene89583:intron | 15.0% |
!! | TTTATATAGGTATTAGTAAT+AGG | + | chr1.1:51674333-51674352 | None:intergenic | 15.0% |
!!! | AAAAATTGTCTTTTTTAGTT+AGG | + | chr1.1:51676421-51676440 | None:intergenic | 15.0% |
!!! | ATTTTATGATATACTACTAA+TGG | + | chr1.1:51673795-51673814 | None:intergenic | 15.0% |
!! | AAAACAAAACCAAACTTTAA+AGG | + | chr1.1:51674602-51674621 | None:intergenic | 20.0% |
!! | AACGACATTAATATTTGAAA+AGG | + | chr1.1:51674865-51674884 | None:intergenic | 20.0% |
!! | AGAAAAAATATCAGATGTTA+AGG | - | chr1.1:51676634-51676653 | MS.gene89583:CDS | 20.0% |
!! | ATAAGCTGAAAATAACTTTA+TGG | - | chr1.1:51673868-51673887 | MS.gene89583:intron | 20.0% |
!! | CAAAAATAAGTTAATCCAAA+CGG | + | chr1.1:51673593-51673612 | None:intergenic | 20.0% |
!! | CAATAAATATTGTCCTTAAT+AGG | + | chr1.1:51675069-51675088 | None:intergenic | 20.0% |
!! | TAAGATAATAGCACAATATT+TGG | + | chr1.1:51675698-51675717 | None:intergenic | 20.0% |
!! | TCAATTCAAAGTAAATACAA+AGG | + | chr1.1:51674431-51674450 | None:intergenic | 20.0% |
!!! | TGTATATTGTGAGTTTTTAT+TGG | + | chr1.1:51675653-51675672 | None:intergenic | 20.0% |
! | AAATAATAAGCCAATCCAAA+CGG | - | chr1.1:51673768-51673787 | MS.gene89583:intron | 25.0% |
! | AAGGTAGTTAATGAAAAAAC+AGG | + | chr1.1:51673686-51673705 | None:intergenic | 25.0% |
! | AATAAGCCGAAAACAAATTA+TGG | - | chr1.1:51673952-51673971 | MS.gene89583:intron | 25.0% |
! | ACTAGAATTCAGATTAAAGA+GGG | + | chr1.1:51675499-51675518 | None:intergenic | 25.0% |
! | AGTATATAAAGTTCAAACTC+AGG | + | chr1.1:51675443-51675462 | None:intergenic | 25.0% |
! | GAACTTTATATACTTTATCC+TGG | - | chr1.1:51675449-51675468 | MS.gene89583:intron | 25.0% |
! | GGAAGAGTTATACTTTATAT+AGG | + | chr1.1:51674346-51674365 | None:intergenic | 25.0% |
! | TAAATGTTCCTAAAAAGTGA+GGG | + | chr1.1:51674462-51674481 | None:intergenic | 25.0% |
! | TAAATTTGAGAAAACTGCAA+CGG | - | chr1.1:51676265-51676284 | MS.gene89583:intron | 25.0% |
! | TACTAGAATTCAGATTAAAG+AGG | + | chr1.1:51675500-51675519 | None:intergenic | 25.0% |
! | TTAAATGTTCCTAAAAAGTG+AGG | + | chr1.1:51674463-51674482 | None:intergenic | 25.0% |
! | TTATGACAATTTGTAGACTA+GGG | - | chr1.1:51675857-51675876 | MS.gene89583:intron | 25.0% |
! | TTTAATGTCGTTAGGAAATA+GGG | - | chr1.1:51673380-51673399 | MS.gene89583:intron | 25.0% |
! | TTTATGACAATTTGTAGACT+AGG | - | chr1.1:51675856-51675875 | MS.gene89583:intron | 25.0% |
!! | AAATTTTACGAGACTAAATG+TGG | - | chr1.1:51674505-51674524 | MS.gene89583:CDS | 25.0% |
!! | AATTTTACGAGACTAAATGT+GGG | - | chr1.1:51674506-51674525 | MS.gene89583:CDS | 25.0% |
!! | AGGATGCTTTTCATATATTA+TGG | - | chr1.1:51673543-51673562 | MS.gene89583:intron | 25.0% |
!! | ATCTTGTTTAGTAGATCTTA+TGG | + | chr1.1:51673996-51674015 | None:intergenic | 25.0% |
!! | GGACTGTTTAATAGATTTTA+TGG | + | chr1.1:51673912-51673931 | None:intergenic | 25.0% |
!! | GTTTTCAAATTCTTAAGACA+AGG | - | chr1.1:51674378-51674397 | MS.gene89583:intron | 25.0% |
!! | TGTTTCTATTCCTTCTTAAT+GGG | - | chr1.1:51674238-51674257 | MS.gene89583:intron | 25.0% |
!! | TTGGCTTATTATTTAGCTTA+TGG | + | chr1.1:51673762-51673781 | None:intergenic | 25.0% |
!! | TTTTAATGTCGTTAGGAAAT+AGG | - | chr1.1:51673379-51673398 | MS.gene89583:intron | 25.0% |
!!! | AACATTTAAGGCAAACATTT+TGG | - | chr1.1:51674474-51674493 | MS.gene89583:intron | 25.0% |
!!! | ACATGTCCATAATTTGTTTT+CGG | + | chr1.1:51673961-51673980 | None:intergenic | 25.0% |
!!! | GATTGATTTCCTTTAAAGTT+TGG | - | chr1.1:51674590-51674609 | MS.gene89583:CDS | 25.0% |
!!! | TCACTTTTTAGGAACATTTA+AGG | - | chr1.1:51674462-51674481 | MS.gene89583:intron | 25.0% |
!!! | TTCTCATTTTTAATGTCGTT+AGG | - | chr1.1:51673372-51673391 | MS.gene89583:intron | 25.0% |
AAAGGAATTGATCAAAGCAA+AGG | + | chr1.1:51674847-51674866 | None:intergenic | 30.0% | |
AAATTTGAGAAAACTGCAAC+GGG | - | chr1.1:51676266-51676285 | MS.gene89583:intron | 30.0% | |
AATAATAAGCCAATCCAAAC+GGG | - | chr1.1:51673769-51673788 | MS.gene89583:intron | 30.0% | |
ACACATGTACAAAACATAGT+GGG | - | chr1.1:51674633-51674652 | MS.gene89583:intron | 30.0% | |
AGAATACATCTAATGCTCAA+GGG | - | chr1.1:51676741-51676760 | MS.gene89583:CDS | 30.0% | |
AGAATTAGGACTTGTATGTT+GGG | - | chr1.1:51674074-51674093 | MS.gene89583:intron | 30.0% | |
AGGAAATCAATCTATAGTTC+TGG | + | chr1.1:51674582-51674601 | None:intergenic | 30.0% | |
AGTAAAAACTCCCATTAAGA+AGG | + | chr1.1:51674251-51674270 | None:intergenic | 30.0% | |
AGTATAACTCTTCCAAAAGT+AGG | - | chr1.1:51674352-51674371 | MS.gene89583:intron | 30.0% | |
ATAATCTTAGTTTCGAGGAT+AGG | - | chr1.1:51674274-51674293 | MS.gene89583:intron | 30.0% | |
ATAGCACAATATTTGGCTAT+TGG | + | chr1.1:51675691-51675710 | None:intergenic | 30.0% | |
ATTTCAACAAGAATTACTCC+TGG | - | chr1.1:51675957-51675976 | MS.gene89583:intron | 30.0% | |
CAGCTTAATTAAGCATTCTA+TGG | - | chr1.1:51673567-51673586 | MS.gene89583:intron | 30.0% | |
CATAGAATGCTTAATTAAGC+TGG | + | chr1.1:51673569-51673588 | None:intergenic | 30.0% | |
CATTAAGAAGGAATAGAAAC+AGG | + | chr1.1:51674239-51674258 | None:intergenic | 30.0% | |
CATTTGGCATATATACAAGA+AGG | - | chr1.1:51676596-51676615 | MS.gene89583:CDS | 30.0% | |
CTGATATAATCTTAGTTTCG+AGG | - | chr1.1:51674269-51674288 | MS.gene89583:intron | 30.0% | |
GATTACGCACTGTAATTTAT+TGG | - | chr1.1:51673512-51673531 | MS.gene89583:intron | 30.0% | |
GGATTTATTGGAATTCTTCA+AGG | - | chr1.1:51676183-51676202 | MS.gene89583:intron | 30.0% | |
GTATAACTCTTCCAAAAGTA+GGG | - | chr1.1:51674353-51674372 | MS.gene89583:intron | 30.0% | |
TAGAATTAGGACTTGTATGT+TGG | - | chr1.1:51674073-51674092 | MS.gene89583:intron | 30.0% | |
TCAATCCATGATACCTTATA+AGG | + | chr1.1:51675355-51675374 | None:intergenic | 30.0% | |
TCTGCTGAACATATGATATT+CGG | - | chr1.1:51674924-51674943 | MS.gene89583:intron | 30.0% | |
TTAGATAGCCAAACATTACA+TGG | + | chr1.1:51675143-51675162 | None:intergenic | 30.0% | |
! | AGCTTGATGATCATAAAACA+CGG | - | chr1.1:51674664-51674683 | MS.gene89583:intron | 30.0% |
! | ATGCAGTAAATTGAAGTGTT+TGG | - | chr1.1:51675809-51675828 | MS.gene89583:intron | 30.0% |
! | TAGTAGCTTTCTTTTGACAT+AGG | - | chr1.1:51674713-51674732 | MS.gene89583:intron | 30.0% |
! | TATGCAACTCACATTTTTGA+TGG | - | chr1.1:51676554-51676573 | MS.gene89583:CDS | 30.0% |
! | TGTTACTCGAATGGATTTAT+TGG | - | chr1.1:51676171-51676190 | MS.gene89583:intron | 30.0% |
! | TTAAGCTCTGATAATACGTT+GGG | - | chr1.1:51674144-51674163 | MS.gene89583:intron | 30.0% |
! | TTCATCCTTATAAGGTATCA+TGG | - | chr1.1:51675347-51675366 | MS.gene89583:intron | 30.0% |
! | TTTAAGCTCTGATAATACGT+TGG | - | chr1.1:51674143-51674162 | MS.gene89583:intron | 30.0% |
!! | CTGTTTCTATTCCTTCTTAA+TGG | - | chr1.1:51674237-51674256 | MS.gene89583:intron | 30.0% |
!! | CTTAGTTTTTCTATGCATCA+GGG | + | chr1.1:51675183-51675202 | None:intergenic | 30.0% |
!! | GGATCTTTTATTTCGAGAAA+AGG | + | chr1.1:51675478-51675497 | None:intergenic | 30.0% |
!! | TCTTAGTTTTTCTATGCATC+AGG | + | chr1.1:51675184-51675203 | None:intergenic | 30.0% |
!! | TCTTTTATTTCGAGAAAAGG+TGG | + | chr1.1:51675475-51675494 | None:intergenic | 30.0% |
!!! | AAAAAGAGCTTTTAGCTTGA+TGG | - | chr1.1:51675887-51675906 | MS.gene89583:intron | 30.0% |
AAACTAGTCATACCATAGCA+TGG | - | chr1.1:51675027-51675046 | MS.gene89583:intron | 35.0% | |
AAATACGTATAGAGTCTGCT+TGG | + | chr1.1:51674034-51674053 | None:intergenic | 35.0% | |
AACTACGTTGTTGAAGATTC+TGG | - | chr1.1:51673193-51673212 | MS.gene89583:CDS | 35.0% | |
AAGCAGACTCTATACGTATT+TGG | - | chr1.1:51674033-51674052 | MS.gene89583:intron | 35.0% | |
AAGGAATAGAAACAGGATCA+AGG | + | chr1.1:51674232-51674251 | None:intergenic | 35.0% | |
AGAAAGCTACTAGAGATCTA+AGG | + | chr1.1:51674705-51674724 | None:intergenic | 35.0% | |
AGCATACAAATATACAGAGC+TGG | + | chr1.1:51676230-51676249 | None:intergenic | 35.0% | |
AGCTCTATCTTGGAAATTGA+TGG | - | chr1.1:51673843-51673862 | MS.gene89583:intron | 35.0% | |
AGGAATAGAAACAGGATCAA+GGG | + | chr1.1:51674231-51674250 | None:intergenic | 35.0% | |
AGTGGTGATCTTGCTTATTT+GGG | - | chr1.1:51673296-51673315 | MS.gene89583:intron | 35.0% | |
AGTTGATCCTAGTTGGAAAT+AGG | - | chr1.1:51676315-51676334 | MS.gene89583:intron | 35.0% | |
ATATACAAGAAGGCGAATTG+AGG | - | chr1.1:51676606-51676625 | MS.gene89583:CDS | 35.0% | |
ATGTGGTAGTTATGTTGTTG+TGG | - | chr1.1:51675393-51675412 | MS.gene89583:intron | 35.0% | |
CACACATGTACAAAACATAG+TGG | - | chr1.1:51674632-51674651 | MS.gene89583:intron | 35.0% | |
CAGAATACATCTAATGCTCA+AGG | - | chr1.1:51676740-51676759 | MS.gene89583:CDS | 35.0% | |
CCTTAATAGGGTTTCATTGA+AGG | + | chr1.1:51675056-51675075 | None:intergenic | 35.0% | |
CCTTCAATGAAACCCTATTA+AGG | - | chr1.1:51675053-51675072 | MS.gene89583:intron | 35.0% | |
CTTGAGCATTAGATGTATTC+TGG | + | chr1.1:51676742-51676761 | None:intergenic | 35.0% | |
GAAAGCTACTAGAGATCTAA+GGG | + | chr1.1:51674704-51674723 | None:intergenic | 35.0% | |
GAGTGGTTAAAATGAAATGC+TGG | - | chr1.1:51673441-51673460 | MS.gene89583:intron | 35.0% | |
GTAGCTTCTCTCTACAAAAA+AGG | + | chr1.1:51676527-51676546 | None:intergenic | 35.0% | |
GTTGATCCTAGTTGGAAATA+GGG | - | chr1.1:51676316-51676335 | MS.gene89583:intron | 35.0% | |
TAACTACCTTGACAAGCTTA+TGG | - | chr1.1:51673696-51673715 | MS.gene89583:intron | 35.0% | |
TAGTGGTGATCTTGCTTATT+TGG | - | chr1.1:51673295-51673314 | MS.gene89583:intron | 35.0% | |
TCTGGCTAAGAGAACATAAA+GGG | + | chr1.1:51674564-51674583 | None:intergenic | 35.0% | |
TTCCAAGATAGAGCTACTTA+TGG | + | chr1.1:51673838-51673857 | None:intergenic | 35.0% | |
TTTAGTTAGGATTCATGAGC+AGG | + | chr1.1:51676408-51676427 | None:intergenic | 35.0% | |
! | AACATATGATATTCGGTGGT+GGG | - | chr1.1:51674931-51674950 | MS.gene89583:intron | 35.0% |
! | AACCATAAGTAGCTCTATCT+TGG | - | chr1.1:51673833-51673852 | MS.gene89583:intron | 35.0% |
! | ACTATCATCCTGTTTTGCAT+TGG | + | chr1.1:51676298-51676317 | None:intergenic | 35.0% |
! | ATCATGGATTGAATAGCCTA+AGG | - | chr1.1:51675363-51675382 | MS.gene89583:intron | 35.0% |
! | ATTTTGCCATAAGCTTGTCA+AGG | + | chr1.1:51673705-51673724 | None:intergenic | 35.0% |
! | CACTATGTTTTGTACATGTG+TGG | + | chr1.1:51674634-51674653 | None:intergenic | 35.0% |
! | CTATCATCCTGTTTTGCATT+GGG | + | chr1.1:51676297-51676316 | None:intergenic | 35.0% |
! | CTTTTACCCTATTTCCAACT+AGG | + | chr1.1:51676325-51676344 | None:intergenic | 35.0% |
! | GTAATTTATTGGTGACTGTG+AGG | - | chr1.1:51673523-51673542 | MS.gene89583:intron | 35.0% |
! | TAGCTGAGATTTTGTGTTTG+TGG | - | chr1.1:51674767-51674786 | MS.gene89583:intron | 35.0% |
! | TATCATCCTGTTTTGCATTG+GGG | + | chr1.1:51676296-51676315 | None:intergenic | 35.0% |
! | TTCTGGCTAAGAGAACATAA+AGG | + | chr1.1:51674565-51674584 | None:intergenic | 35.0% |
! | TTGATGATCATAAAACACGG+TGG | - | chr1.1:51674667-51674686 | MS.gene89583:intron | 35.0% |
! | TTTGAAAACCACCCTACTTT+TGG | + | chr1.1:51674367-51674386 | None:intergenic | 35.0% |
!! | AACTCACATTTTTGATGGAC+TGG | - | chr1.1:51676559-51676578 | MS.gene89583:CDS | 35.0% |
!! | AATTCTAAAGTGTGCAAGCA+TGG | + | chr1.1:51674060-51674079 | None:intergenic | 35.0% |
!! | TGCTTGCACACTTTAGAATT+AGG | - | chr1.1:51674060-51674079 | MS.gene89583:intron | 35.0% |
!! | TTTCAAGCTTTGTTTCAGCA+CGG | + | chr1.1:51676706-51676725 | None:intergenic | 35.0% |
AAACCTCATACACTAAGTGC+TGG | + | chr1.1:51674125-51674144 | None:intergenic | 40.0% | |
AAGCTGCGTATCATGAAAAG+CGG | + | chr1.1:51673270-51673289 | None:intergenic | 40.0% | |
ACTGTAGTGTAACCCTTGAT+TGG | - | chr1.1:51676102-51676121 | MS.gene89583:intron | 40.0% | |
AGAACCTGAAATGCCAATCA+AGG | + | chr1.1:51676118-51676137 | None:intergenic | 40.0% | |
ATGTTGTTGTGGACAATGTC+AGG | - | chr1.1:51675404-51675423 | MS.gene89583:intron | 40.0% | |
ATTGAACATCTGCTTACTCC+AGG | + | chr1.1:51675978-51675997 | None:intergenic | 40.0% | |
CTACCACATGCAAATTCCTT+AGG | + | chr1.1:51675382-51675401 | None:intergenic | 40.0% | |
CTGATAATACGTTGGGACTT+GGG | - | chr1.1:51674151-51674170 | MS.gene89583:intron | 40.0% | |
GAACCTGAAATGCCAATCAA+GGG | + | chr1.1:51676117-51676136 | None:intergenic | 40.0% | |
GATAATGAAGATTCCTCGAG+CGG | - | chr1.1:51673038-51673057 | MS.gene89583:CDS | 40.0% | |
GCATTAGATGTATTCTGGAC+AGG | + | chr1.1:51676737-51676756 | None:intergenic | 40.0% | |
GCTGAACATATGATATTCGG+TGG | - | chr1.1:51674927-51674946 | MS.gene89583:intron | 40.0% | |
GGATCTTGGAGTAAAAACGT+TGG | - | chr1.1:51673320-51673339 | MS.gene89583:intron | 40.0% | |
GGATGATAGTTGATCCTAGT+TGG | - | chr1.1:51676308-51676327 | MS.gene89583:intron | 40.0% | |
GGGTCTTCTTCATCCTTATA+AGG | - | chr1.1:51675339-51675358 | MS.gene89583:intron | 40.0% | |
TAACCCTTGATTGGCATTTC+AGG | - | chr1.1:51676111-51676130 | MS.gene89583:intron | 40.0% | |
TAACTCTTCCAAAAGTAGGG+TGG | - | chr1.1:51674356-51674375 | MS.gene89583:intron | 40.0% | |
TAGCCTAAGGAATTTGCATG+TGG | - | chr1.1:51675376-51675395 | MS.gene89583:intron | 40.0% | |
TAGGATTCATGAGCAGGTTA+TGG | + | chr1.1:51676402-51676421 | None:intergenic | 40.0% | |
TATACTACTAATGGCCCGTT+TGG | + | chr1.1:51673786-51673805 | None:intergenic | 40.0% | |
TCTGATAATACGTTGGGACT+TGG | - | chr1.1:51674150-51674169 | MS.gene89583:intron | 40.0% | |
TGCAGGTTCCATGTAATGTT+TGG | - | chr1.1:51675132-51675151 | MS.gene89583:intron | 40.0% | |
TGCTTGATATAGATCTGCAG+TGG | - | chr1.1:51675266-51675285 | MS.gene89583:intron | 40.0% | |
TGTAGGAGAATTGCATTCCT+TGG | + | chr1.1:51673073-51673092 | None:intergenic | 40.0% | |
TGTCGTTAGGAAATAGGGTT+AGG | - | chr1.1:51673385-51673404 | MS.gene89583:intron | 40.0% | |
TGTCTGGATGATGAAGAGAA+CGG | + | chr1.1:51676785-51676804 | None:intergenic | 40.0% | |
TGTTGTTGTGGACAATGTCA+GGG | - | chr1.1:51675405-51675424 | MS.gene89583:intron | 40.0% | |
TTAAGCATTCTATGGCCGTT+TGG | - | chr1.1:51673575-51673594 | MS.gene89583:intron | 40.0% | |
TTCATATAACCAACCCCACT+AGG | + | chr1.1:51676369-51676388 | None:intergenic | 40.0% | |
TTCCTAGCATAAGCACTAGT+GGG | + | chr1.1:51673933-51673952 | None:intergenic | 40.0% | |
TTGCTTATTTGGGTGGATCT+TGG | - | chr1.1:51673306-51673325 | MS.gene89583:intron | 40.0% | |
TTTCCTAGCATAAGCACTAG+TGG | + | chr1.1:51673934-51673953 | None:intergenic | 40.0% | |
! | AATGTCGTTGCTGTTATCCA+GGG | - | chr1.1:51674876-51674895 | MS.gene89583:intron | 40.0% |
! | GAACATATGATATTCGGTGG+TGG | - | chr1.1:51674930-51674949 | MS.gene89583:intron | 40.0% |
! | GAATGCATAAGGTATCCGAT+GGG | - | chr1.1:51675290-51675309 | MS.gene89583:intron | 40.0% |
! | TAAGCCTTTTTCCACCTAGT+GGG | - | chr1.1:51676352-51676371 | MS.gene89583:intron | 40.0% |
! | TAATGTCGTTGCTGTTATCC+AGG | - | chr1.1:51674875-51674894 | MS.gene89583:intron | 40.0% |
! | TATATACAAGCGTTGCATGC+AGG | - | chr1.1:51675115-51675134 | MS.gene89583:intron | 40.0% |
! | TTGTTGTTGGATGTCGTTGT+AGG | + | chr1.1:51673090-51673109 | None:intergenic | 40.0% |
!! | CTTCTGCTTTTGACAGTTGA+AGG | - | chr1.1:51675208-51675227 | MS.gene89583:intron | 40.0% |
!!! | GGTTTCGCTTTTTTCGCATT+CGG | - | chr1.1:51673406-51673425 | MS.gene89583:intron | 40.0% |
!!! | TTATGCTGCCCTCACTTTTT+AGG | - | chr1.1:51674451-51674470 | MS.gene89583:intron | 40.0% |
!!! | TTTTGATGGACTGGAGACAT+GGG | - | chr1.1:51676568-51676587 | MS.gene89583:CDS | 40.0% |
!!! | TTTTTGATGGACTGGAGACA+TGG | - | chr1.1:51676567-51676586 | MS.gene89583:CDS | 40.0% |
ACGTTGTTGAAGATTCTGGC+TGG | - | chr1.1:51673197-51673216 | MS.gene89583:CDS | 45.0% | |
AGGTTGAAATCGACGAAGAG+CGG | + | chr1.1:51673119-51673138 | None:intergenic | 45.0% | |
ATATAACCAACCCCACTAGG+TGG | + | chr1.1:51676366-51676385 | None:intergenic | 45.0% | |
ATCAACTTGTCTCTCCTGTC+AGG | + | chr1.1:51675241-51675260 | None:intergenic | 45.0% | |
CAACCAGCACTTAGTGTATG+AGG | - | chr1.1:51674119-51674138 | MS.gene89583:intron | 45.0% | |
CATTGAAGGACTCCATGCTA+TGG | + | chr1.1:51675042-51675061 | None:intergenic | 45.0% | |
CCATTCGAGTAACAACATCC+AGG | + | chr1.1:51676165-51676184 | None:intergenic | 45.0% | |
CCTGGATGTTGTTACTCGAA+TGG | - | chr1.1:51676162-51676181 | MS.gene89583:intron | 45.0% | |
CGTCGAGTGCAAATCTGTTT+GGG | - | chr1.1:51675319-51675338 | MS.gene89583:intron | 45.0% | |
CTCTTCATCATCCAGACACA+TGG | - | chr1.1:51676787-51676806 | MS.gene89583:CDS | 45.0% | |
CTTCAAGGAAGAATGTGAGC+AGG | - | chr1.1:51676198-51676217 | MS.gene89583:intron | 45.0% | |
GGTGATCTTGCTTATTTGGG+TGG | - | chr1.1:51673299-51673318 | MS.gene89583:intron | 45.0% | |
TACTAATGGCCCGTTTGGAT+TGG | + | chr1.1:51673781-51673800 | None:intergenic | 45.0% | |
TATTTCGAGAAAAGGTGGCC+AGG | + | chr1.1:51675470-51675489 | None:intergenic | 45.0% | |
TCGATAGTATGCCATGTGTC+TGG | + | chr1.1:51676801-51676820 | None:intergenic | 45.0% | |
! | AAGCCTTTTTCCACCTAGTG+GGG | - | chr1.1:51676353-51676372 | MS.gene89583:intron | 45.0% |
! | CGAATGCATAAGGTATCCGA+TGG | - | chr1.1:51675289-51675308 | MS.gene89583:intron | 45.0% |
! | CGTTGTTGAAGATTCTGGCT+GGG | - | chr1.1:51673198-51673217 | MS.gene89583:CDS | 45.0% |
! | CTAAGCCTTTTTCCACCTAG+TGG | - | chr1.1:51676351-51676370 | MS.gene89583:intron | 45.0% |
! | GATACGCAGCTTGTTTGTAG+TGG | - | chr1.1:51673278-51673297 | MS.gene89583:CDS | 45.0% |
! | TTCGGAGATTTTGTGTCGAG+TGG | - | chr1.1:51673424-51673443 | MS.gene89583:intron | 45.0% |
!! | CTCATACACTAAGTGCTGGT+TGG | + | chr1.1:51674121-51674140 | None:intergenic | 45.0% |
!! | TTGAAGGTGTTGATCCTGAC+AGG | - | chr1.1:51675224-51675243 | MS.gene89583:intron | 45.0% |
AGACAAGGTCTTCTGCAGCA+TGG | - | chr1.1:51674393-51674412 | MS.gene89583:intron | 50.0% | |
AGAGATCTAAGGGTCCGAAG+TGG | + | chr1.1:51674694-51674713 | None:intergenic | 50.0% | |
CAACCCCACTAGGTGGAAAA+AGG | + | chr1.1:51676359-51676378 | None:intergenic | 50.0% | |
CTGCAGCATGGGTGAATGTT+AGG | - | chr1.1:51674405-51674424 | MS.gene89583:intron | 50.0% | |
GACAAGGTCTTCTGCAGCAT+GGG | - | chr1.1:51674394-51674413 | MS.gene89583:intron | 50.0% | |
GAGATCTAAGGGTCCGAAGT+GGG | + | chr1.1:51674693-51674712 | None:intergenic | 50.0% | |
GATCAAAGCAAAGGCAGCAC+AGG | + | chr1.1:51674838-51674857 | None:intergenic | 50.0% | |
GCGTCGAGTGCAAATCTGTT+TGG | - | chr1.1:51675318-51675337 | MS.gene89583:intron | 50.0% | |
GGAGACATGGGCAACTCATT+TGG | - | chr1.1:51676580-51676599 | MS.gene89583:CDS | 50.0% | |
GGATGAGGTAACAGTTGACC+TGG | - | chr1.1:51676144-51676163 | MS.gene89583:intron | 50.0% | |
GGATGTCCCCAATGCAAAAC+AGG | - | chr1.1:51676287-51676306 | MS.gene89583:intron | 50.0% | |
GTCCCACTAGTGCTTATGCT+AGG | - | chr1.1:51673928-51673947 | MS.gene89583:intron | 50.0% | |
TAAAACACGGTGGCCCACTT+CGG | - | chr1.1:51674677-51674696 | MS.gene89583:intron | 50.0% | |
TCAGGTTCTCTTGCTGGATG+AGG | - | chr1.1:51676129-51676148 | MS.gene89583:intron | 50.0% | |
TCTGCAGTGGCGAATGCATA+AGG | - | chr1.1:51675279-51675298 | MS.gene89583:intron | 50.0% | |
TTCAACCTCCACGTTTCTCC+CGG | - | chr1.1:51673131-51673150 | MS.gene89583:CDS | 50.0% | |
TTGAAATCGACGAAGAGCGG+TGG | + | chr1.1:51673116-51673135 | None:intergenic | 50.0% | |
! | AGAGCGGTGGTTGTTGTTGT+TGG | + | chr1.1:51673103-51673122 | None:intergenic | 50.0% |
! | AGGAGTCAGGGTGCAGTTTT+AGG | + | chr1.1:51674807-51674826 | None:intergenic | 50.0% |
! | ATAAGGTATCCGATGGGCAG+CGG | - | chr1.1:51675296-51675315 | MS.gene89583:intron | 50.0% |
! | CTTTTTCCACCTAGTGGGGT+TGG | - | chr1.1:51676357-51676376 | MS.gene89583:intron | 50.0% |
! | GATTCTGGCTGGGAAGCATA+TGG | - | chr1.1:51673208-51673227 | MS.gene89583:CDS | 50.0% |
!! | GGCATTTCAGGTTCTCTTGC+TGG | - | chr1.1:51676123-51676142 | MS.gene89583:intron | 50.0% |
ACAGGTTAGCAGGAGGAGTC+AGG | + | chr1.1:51674820-51674839 | None:intergenic | 55.0% | |
AGGACTCGACAACAGACAGC+AGG | + | chr1.1:51676679-51676698 | None:intergenic | 55.0% | |
ATCTGGATCCGGGAGAAACG+TGG | + | chr1.1:51673142-51673161 | None:intergenic | 55.0% | |
CAAAGGCAGCACAGGTTAGC+AGG | + | chr1.1:51674830-51674849 | None:intergenic | 55.0% | |
CAGGGAGACATTCCACTGCA+GGG | - | chr1.1:51674894-51674913 | MS.gene89583:CDS | 55.0% | |
CAGGTTAGCAGGAGGAGTCA+GGG | + | chr1.1:51674819-51674838 | None:intergenic | 55.0% | |
TCGAGCGGAATCAGAGTCCA+AGG | - | chr1.1:51673053-51673072 | MS.gene89583:CDS | 55.0% | |
TGCTGTCTGTTGTCGAGTCC+TGG | - | chr1.1:51676678-51676697 | MS.gene89583:CDS | 55.0% | |
TTGGACTCTGATTCCGCTCG+AGG | + | chr1.1:51673054-51673073 | None:intergenic | 55.0% | |
! | CTGGCTGGGAAGCATATGGT+TGG | - | chr1.1:51673212-51673231 | MS.gene89583:CDS | 55.0% |
! | CTTTGTTTCAGCACGGAGCC+AGG | + | chr1.1:51676699-51676718 | None:intergenic | 55.0% |
! | GCTGGGAAGCATATGGTTGG+AGG | - | chr1.1:51673215-51673234 | MS.gene89583:CDS | 55.0% |
AGGCAGCACAGGTTAGCAGG+AGG | + | chr1.1:51674827-51674846 | None:intergenic | 60.0% | |
CCAGGGAGACATTCCACTGC+AGG | - | chr1.1:51674893-51674912 | MS.gene89583:CDS | 60.0% | |
CCTGCAGTGGAATGTCTCCC+TGG | + | chr1.1:51674896-51674915 | None:intergenic | 60.0% | |
GCAGAGAAGTCTCCCTGCAG+TGG | + | chr1.1:51674909-51674928 | None:intergenic | 60.0% | |
GGATCCAGATGCCTCCTCGT+CGG | - | chr1.1:51673152-51673171 | MS.gene89583:CDS | 60.0% | |
TGGATCCGGGAGAAACGTGG+AGG | + | chr1.1:51673139-51673158 | None:intergenic | 60.0% | |
!! | ACGAGGAGGCATCTGGATCC+GGG | + | chr1.1:51673152-51673171 | None:intergenic | 60.0% |
!! | ATCCGTTAGCACCGACGAGG+AGG | + | chr1.1:51673166-51673185 | None:intergenic | 60.0% |
!! | CAGATCCGTTAGCACCGACG+AGG | + | chr1.1:51673169-51673188 | None:intergenic | 60.0% |
!! | CTCGTCGGTGCTAACGGATC+TGG | - | chr1.1:51673167-51673186 | MS.gene89583:CDS | 60.0% |
!! | GACGAGGAGGCATCTGGATC+CGG | + | chr1.1:51673153-51673172 | None:intergenic | 60.0% |
!! | TGCCTCCTCGTCGGTGCTAA+CGG | - | chr1.1:51673161-51673180 | MS.gene89583:CDS | 60.0% |
!! | AGCACCGACGAGGAGGCATC+TGG | + | chr1.1:51673159-51673178 | None:intergenic | 65.0% |
CACTCGACGCCGCTGCCCAT+CGG | + | chr1.1:51675308-51675327 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.1 | gene | 51673014 | 51676823 | 51673014 | ID=MS.gene89583 |
chr1.1 | mRNA | 51673014 | 51676823 | 51673014 | ID=MS.gene89583.t1;Parent=MS.gene89583 |
chr1.1 | exon | 51676488 | 51676823 | 51676488 | ID=MS.gene89583.t1.exon1;Parent=MS.gene89583.t1 |
chr1.1 | CDS | 51676488 | 51676823 | 51676488 | ID=cds.MS.gene89583.t1;Parent=MS.gene89583.t1 |
chr1.1 | exon | 51674889 | 51674940 | 51674889 | ID=MS.gene89583.t1.exon2;Parent=MS.gene89583.t1 |
chr1.1 | CDS | 51674889 | 51674940 | 51674889 | ID=cds.MS.gene89583.t1;Parent=MS.gene89583.t1 |
chr1.1 | exon | 51674477 | 51674613 | 51674477 | ID=MS.gene89583.t1.exon3;Parent=MS.gene89583.t1 |
chr1.1 | CDS | 51674477 | 51674613 | 51674477 | ID=cds.MS.gene89583.t1;Parent=MS.gene89583.t1 |
chr1.1 | exon | 51673618 | 51673704 | 51673618 | ID=MS.gene89583.t1.exon4;Parent=MS.gene89583.t1 |
chr1.1 | CDS | 51673618 | 51673704 | 51673618 | ID=cds.MS.gene89583.t1;Parent=MS.gene89583.t1 |
chr1.1 | exon | 51673014 | 51673301 | 51673014 | ID=MS.gene89583.t1.exon5;Parent=MS.gene89583.t1 |
chr1.1 | CDS | 51673014 | 51673301 | 51673014 | ID=cds.MS.gene89583.t1;Parent=MS.gene89583.t1 |
Gene Sequence |
Protein sequence |