Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene03828.t1 | XP_003606124.2 | 97.7 | 299 | 7 | 0 | 89 | 387 | 89 | 387 | 9.10E-174 | 619.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene03828.t1 | Q2KJ44 | 49.0 | 294 | 150 | 0 | 92 | 385 | 22 | 315 | 1.3e-83 | 311.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene03828.t1 | G7JIF2 | 97.7 | 299 | 7 | 0 | 89 | 387 | 89 | 387 | 6.6e-174 | 619.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene03828 | MS.gene87267 | PPI |
| MS.gene03828 | MS.gene031528 | PPI |
| MS.gene03828 | MS.gene031278 | PPI |
| MS.gene03828 | MS.gene99805 | PPI |
| MS.gene03828 | MS.gene96812 | PPI |
| MS.gene03828 | MS.gene006768 | PPI |
| MS.gene03828 | MS.gene56557 | PPI |
| MS.gene03828 | MS.gene69797 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene03828.t1 | MTR_4g053370 | 97.158 | 387 | 11 | 0 | 1 | 387 | 1 | 387 | 0.0 | 789 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene03828.t1 | AT4G08960 | 76.438 | 365 | 85 | 1 | 23 | 387 | 27 | 390 | 0.0 | 589 |
Find 143 sgRNAs with CRISPR-Local
Find 161 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCACGCATACCATTTAATA+AGG | 0.252744 | 4.1:-44694297 | None:intergenic |
| AACGCGAGCCGGATTGATTA+TGG | 0.275169 | 4.1:+44693791 | MS.gene03828:CDS |
| AAAAGAAAATGCTGCATAAT+AGG | 0.276996 | 4.1:-44694268 | None:intergenic |
| CGCGGCTTGGTTGTACTGTT+TGG | 0.283171 | 4.1:+44693835 | MS.gene03828:CDS |
| GGTTGGTGGTGGGGAGATTT+CGG | 0.288567 | 4.1:-44693288 | None:intergenic |
| CGCTTTCACGACTCCGATTC+CGG | 0.296113 | 4.1:+44693470 | MS.gene03828:CDS |
| CCGGTGGTGGGTGGTGAGTT+TGG | 0.300291 | 4.1:-44693203 | None:intergenic |
| TATCTTTATCTTGCTTGTAT+TGG | 0.301174 | 4.1:+44694109 | MS.gene03828:CDS |
| GTTGCAATTGGTTTATTGTT+TGG | 0.303551 | 4.1:+44693940 | MS.gene03828:CDS |
| TGTACTGTTTGGCTAGATTA+GGG | 0.307161 | 4.1:+44693846 | MS.gene03828:CDS |
| TTTCATCAATCCATAGGGTT+AGG | 0.320394 | 4.1:-44693607 | None:intergenic |
| ATGATGGCGCGTTGGGAGTT+GGG | 0.322382 | 4.1:-44693347 | None:intergenic |
| TTGTACTGTTTGGCTAGATT+AGG | 0.333998 | 4.1:+44693845 | MS.gene03828:CDS |
| GATTCATAACAAGGATATAT+TGG | 0.335690 | 4.1:+44694069 | MS.gene03828:CDS |
| GGATTCGTTTGACTGGGATT+TGG | 0.347891 | 4.1:-44693427 | None:intergenic |
| TCCTTGTTATGAATCGATTT+CGG | 0.352739 | 4.1:-44694061 | None:intergenic |
| ATAAGCCATGTTTCCGTATC+GGG | 0.354305 | 4.1:-44693651 | None:intergenic |
| GATTGGTGAGGAAGATTATC+AGG | 0.358485 | 4.1:+44693871 | MS.gene03828:CDS |
| CTATTAACCTTCTTCCAATT+CGG | 0.369715 | 4.1:-44694202 | None:intergenic |
| CGTTGGGAGTTGGGGTCCGG+TGG | 0.372224 | 4.1:-44693338 | None:intergenic |
| AACAGCACACGGCATCAAAT+AGG | 0.373831 | 4.1:-44694361 | None:intergenic |
| GATGATGGCGCGTTGGGAGT+TGG | 0.375528 | 4.1:-44693348 | None:intergenic |
| CTGCAGGTTCACATGGTGTA+TGG | 0.376661 | 4.1:+44693966 | MS.gene03828:CDS |
| GTTTGACTGGGATTTGGAAA+TGG | 0.380381 | 4.1:-44693421 | None:intergenic |
| ATTGGACGGTAGGTTGGTGG+TGG | 0.381772 | 4.1:-44693299 | None:intergenic |
| GGGGATTGGATTCGTTTGAC+TGG | 0.384375 | 4.1:-44693434 | None:intergenic |
| CGGGAACGTGTTGGGCTTGT+GGG | 0.387442 | 4.1:-44693382 | None:intergenic |
| ACGTGTTGGGCTTGTGGGAC+CGG | 0.388222 | 4.1:-44693377 | None:intergenic |
| AGCCGGATTGATTATGGAAC+CGG | 0.391263 | 4.1:+44693797 | MS.gene03828:CDS |
| TAAATGGTATGCGTGCTTCT+TGG | 0.393961 | 4.1:+44694303 | MS.gene03828:CDS |
| CTTGCAGCAGGTGCCGGTGG+TGG | 0.396907 | 4.1:-44693216 | None:intergenic |
| GGTGGTGGTGCGAAGGTTGT+TGG | 0.400455 | 4.1:-44693248 | None:intergenic |
| ATATTAGTGGGGTGCCGAAT+TGG | 0.401572 | 4.1:+44694188 | MS.gene03828:CDS |
| TTGGGGTCCGGTGGGATCGC+CGG | 0.416616 | 4.1:-44693329 | None:intergenic |
| CACGAACGATTGGTCAGTTC+CGG | 0.418142 | 4.1:+44693683 | MS.gene03828:CDS |
| GGAACAATTTCAACTGTTGC+CGG | 0.418494 | 4.1:-44693746 | None:intergenic |
| AGCGAGGATGATGGCGCGTT+GGG | 0.418643 | 4.1:-44693354 | None:intergenic |
| TGGGGAGATTTCGGAGAAGG+CGG | 0.419097 | 4.1:-44693279 | None:intergenic |
| TTGCAGCAGGTGCCGGTGGT+GGG | 0.426710 | 4.1:-44693215 | None:intergenic |
| TGAAGCAACGGGAACGTGTT+GGG | 0.427649 | 4.1:-44693390 | None:intergenic |
| ATGAAACAAATTTCGCGGCT+TGG | 0.431456 | 4.1:+44693822 | MS.gene03828:CDS |
| CTTCGTCGTGGTGGTGGTGG+TGG | 0.437472 | 4.1:-44693169 | None:intergenic |
| GCGCGTTGGGAGTTGGGGTC+CGG | 0.439646 | 4.1:-44693341 | None:intergenic |
| GGGAGATTTCGGAGAAGGCG+GGG | 0.444069 | 4.1:-44693277 | None:intergenic |
| TTCATCAATCCATAGGGTTA+GGG | 0.447906 | 4.1:-44693606 | None:intergenic |
| CGCGAAATTTGTTTCATGCC+CGG | 0.450732 | 4.1:-44693816 | None:intergenic |
| GGGGAGATTTCGGAGAAGGC+GGG | 0.450902 | 4.1:-44693278 | None:intergenic |
| TGGACGGTAGGTTGGTGGTG+GGG | 0.450989 | 4.1:-44693297 | None:intergenic |
| TGGACCGCCGCACTTGCAGC+AGG | 0.453080 | 4.1:-44693228 | None:intergenic |
| GATGTATAAAGCTGAAGTCT+TGG | 0.454317 | 4.1:+44694237 | MS.gene03828:CDS |
| GGGATCGCCGGAGCGCGGAT+TGG | 0.455523 | 4.1:-44693317 | None:intergenic |
| GCCGCACTTGCAGCAGGTGC+CGG | 0.458057 | 4.1:-44693222 | None:intergenic |
| TTGGCTAGATTAGGGGTGAT+TGG | 0.458456 | 4.1:+44693854 | MS.gene03828:CDS |
| CCTATGTTGGATGATATTAG+TGG | 0.459272 | 4.1:+44694175 | MS.gene03828:CDS |
| GCAGGTTCACATGGTGTATG+GGG | 0.465872 | 4.1:+44693968 | MS.gene03828:CDS |
| CCGGGAGGAACTTAAACATA+AGG | 0.467437 | 4.1:-44693712 | None:intergenic |
| GTGGAATTTCATCAATCCAT+AGG | 0.471337 | 4.1:-44693613 | None:intergenic |
| TCGAACCTGGCACGAACGAT+TGG | 0.473501 | 4.1:+44693673 | MS.gene03828:CDS |
| TGCAGGTTCACATGGTGTAT+GGG | 0.476485 | 4.1:+44693967 | MS.gene03828:CDS |
| GGTCTTCGTCGTGGTGGTGG+TGG | 0.481516 | 4.1:-44693172 | None:intergenic |
| GTTTATTGTTTGGAACCTGC+AGG | 0.482061 | 4.1:+44693950 | MS.gene03828:CDS |
| ATTGATGAGAAAGTTGCAAT+TGG | 0.482836 | 4.1:+44693928 | MS.gene03828:CDS |
| TGCGACGACCCAAATATAAA+CGG | 0.484672 | 4.1:-44694013 | None:intergenic |
| ATTGTTTCTGATTGGTGGCA+AGG | 0.490486 | 4.1:-44693557 | None:intergenic |
| TGAAAGCGGCGAATATCATC+GGG | 0.492561 | 4.1:-44693455 | None:intergenic |
| TGCTGAGCATTCACCTATGT+TGG | 0.492827 | 4.1:+44694162 | MS.gene03828:CDS |
| AATTGGAAGAAGGTTAATAG+TGG | 0.495791 | 4.1:+44694205 | MS.gene03828:CDS |
| TAGTGTTAATTGTTTCTGAT+TGG | 0.497846 | 4.1:-44693565 | None:intergenic |
| TGGATTCATCGTCGCACTAT+CGG | 0.499386 | 4.1:+44693505 | MS.gene03828:CDS |
| TTCTTGAAACCCTAACCCTA+TGG | 0.500537 | 4.1:+44693597 | MS.gene03828:CDS |
| CTTAAACATAAGGGATTCAC+CGG | 0.503215 | 4.1:-44693702 | None:intergenic |
| TGATGGCGCGTTGGGAGTTG+GGG | 0.504793 | 4.1:-44693346 | None:intergenic |
| GCCCGGTTCCATAATCAATC+CGG | 0.506439 | 4.1:-44693799 | None:intergenic |
| TGGAAAGGCGGTGAAGCAAC+GGG | 0.507130 | 4.1:-44693401 | None:intergenic |
| TGTTAATTGTTTCTGATTGG+TGG | 0.509567 | 4.1:-44693562 | None:intergenic |
| GGAGATTTCGGAGAAGGCGG+GGG | 0.510710 | 4.1:-44693276 | None:intergenic |
| GCGCGGATTGGACGGTAGGT+TGG | 0.511050 | 4.1:-44693305 | None:intergenic |
| TTGGACGGTAGGTTGGTGGT+GGG | 0.511793 | 4.1:-44693298 | None:intergenic |
| ACTGACCAATCGTTCGTGCC+AGG | 0.512257 | 4.1:-44693678 | None:intergenic |
| CTACCGTCCAATCCGCGCTC+CGG | 0.512680 | 4.1:+44693310 | MS.gene03828:CDS |
| TGGTGGGGAGATTTCGGAGA+AGG | 0.514133 | 4.1:-44693282 | None:intergenic |
| GTTGCCGGTTTAAGATCCTC+CGG | 0.515286 | 4.1:-44693731 | None:intergenic |
| GGAAGGTGGTGGTGGTGCGA+AGG | 0.515586 | 4.1:-44693255 | None:intergenic |
| ATAGTTTCGGTAACGCGAGC+CGG | 0.517100 | 4.1:+44693780 | MS.gene03828:CDS |
| CAGCAGGTGCCGGTGGTGGG+TGG | 0.517803 | 4.1:-44693212 | None:intergenic |
| GGTGGTCTTCGTCGTGGTGG+TGG | 0.519990 | 4.1:-44693175 | None:intergenic |
| GTGAAAGCGGCGAATATCAT+CGG | 0.520433 | 4.1:-44693456 | None:intergenic |
| ACGGGAACGTGTTGGGCTTG+TGG | 0.521369 | 4.1:-44693383 | None:intergenic |
| TGGGGTGCCGAATTGGAAGA+AGG | 0.521399 | 4.1:+44694195 | MS.gene03828:CDS |
| GGGATTGGATTCGTTTGACT+GGG | 0.523160 | 4.1:-44693433 | None:intergenic |
| CGGATTGGACGGTAGGTTGG+TGG | 0.525467 | 4.1:-44693302 | None:intergenic |
| GCACGCATACCATTTAATAA+GGG | 0.525572 | 4.1:-44694296 | None:intergenic |
| CGGGAGGAACTTAAACATAA+GGG | 0.526089 | 4.1:-44693711 | None:intergenic |
| TTACAACAAGCTGCCCGATA+CGG | 0.527760 | 4.1:+44693638 | MS.gene03828:CDS |
| ACCGGCACCTGCTGCAAGTG+CGG | 0.528830 | 4.1:+44693221 | MS.gene03828:CDS |
| CCTCCCGGAGGATCTTAAAC+CGG | 0.532607 | 4.1:+44693727 | MS.gene03828:CDS |
| CCGCGCTCCGGCGATCCCAC+CGG | 0.534862 | 4.1:+44693322 | MS.gene03828:CDS |
| TCGCCGGAGCGCGGATTGGA+CGG | 0.536344 | 4.1:-44693313 | None:intergenic |
| TGGAATTTCATCAATCCATA+GGG | 0.538690 | 4.1:-44693612 | None:intergenic |
| GATAAGCCATGTTTCCGTAT+CGG | 0.540903 | 4.1:-44693652 | None:intergenic |
| CCTTATGTTTAAGTTCCTCC+CGG | 0.543603 | 4.1:+44693712 | MS.gene03828:CDS |
| TGGGACCGGAGCGAGGATGA+TGG | 0.545102 | 4.1:-44693363 | None:intergenic |
| GGGCTTGTGGGACCGGAGCG+AGG | 0.546066 | 4.1:-44693370 | None:intergenic |
| ACTGGGATTTGGAAATGGAA+AGG | 0.550667 | 4.1:-44693416 | None:intergenic |
| CGGAGCGCGGATTGGACGGT+AGG | 0.553229 | 4.1:-44693309 | None:intergenic |
| ATGGAAAGGCGGTGAAGCAA+CGG | 0.554830 | 4.1:-44693402 | None:intergenic |
| GAAACATGGCTTATCGAACC+TGG | 0.555654 | 4.1:+44693660 | MS.gene03828:CDS |
| ACGCGCCATCATCCTCGCTC+CGG | 0.556958 | 4.1:+44693358 | MS.gene03828:CDS |
| CCGGTGGGATCGCCGGAGCG+CGG | 0.557243 | 4.1:-44693322 | None:intergenic |
| TTGGAACCTGCAGGTTCACA+TGG | 0.558607 | 4.1:+44693959 | MS.gene03828:CDS |
| GAGCGAGGATGATGGCGCGT+TGG | 0.559327 | 4.1:-44693355 | None:intergenic |
| CGGGCATGAAACAAATTTCG+CGG | 0.561438 | 4.1:+44693817 | MS.gene03828:CDS |
| GTACTGTTTGGCTAGATTAG+GGG | 0.562764 | 4.1:+44693847 | MS.gene03828:CDS |
| GTTGGGAGTTGGGGTCCGGT+GGG | 0.565326 | 4.1:-44693337 | None:intergenic |
| GGCACCTGCTGCAAGTGCGG+CGG | 0.567796 | 4.1:+44693224 | MS.gene03828:CDS |
| CCAAACTCACCACCCACCAC+CGG | 0.570430 | 4.1:+44693203 | MS.gene03828:CDS |
| GTGAAGCAACGGGAACGTGT+TGG | 0.572921 | 4.1:-44693391 | None:intergenic |
| TATCGGGCAGCTTGTTGTAA+CGG | 0.574048 | 4.1:-44693635 | None:intergenic |
| TTGCCGGTTTAAGATCCTCC+GGG | 0.581718 | 4.1:-44693730 | None:intergenic |
| TGCGGTGGTCTTCGTCGTGG+TGG | 0.583701 | 4.1:-44693178 | None:intergenic |
| TAAAGCTGAAGTCTTGGAGA+AGG | 0.585717 | 4.1:+44694243 | MS.gene03828:CDS |
| TGGGTGGTGAGTTTGGAGTG+CGG | 0.593509 | 4.1:-44693196 | None:intergenic |
| GCACTTGCAGCAGGTGCCGG+TGG | 0.593819 | 4.1:-44693219 | None:intergenic |
| CAGGTTCACATGGTGTATGG+GGG | 0.594802 | 4.1:+44693969 | MS.gene03828:CDS |
| GCCGAAATCGATTCATAACA+AGG | 0.602106 | 4.1:+44694060 | MS.gene03828:CDS |
| TTTGTGATGAAGGTGAAGAA+GGG | 0.607215 | 4.1:+44694133 | MS.gene03828:CDS |
| CCACTAATATCATCCAACAT+AGG | 0.607641 | 4.1:-44694175 | None:intergenic |
| CATACACCATGTGAACCTGC+AGG | 0.608665 | 4.1:-44693965 | None:intergenic |
| CTATGTTGGATGATATTAGT+GGG | 0.612054 | 4.1:+44694176 | MS.gene03828:CDS |
| GCCGGATTGATTATGGAACC+GGG | 0.616378 | 4.1:+44693798 | MS.gene03828:CDS |
| GCACTATCGGATTCCACGCG+CGG | 0.619937 | 4.1:+44693518 | MS.gene03828:CDS |
| TAGATTAGGGGTGATTGGTG+AGG | 0.621399 | 4.1:+44693859 | MS.gene03828:CDS |
| CGGGCAGCTTGTTGTAACGG+TGG | 0.634007 | 4.1:-44693632 | None:intergenic |
| CGGAATCGGAGTCGTGAAAG+CGG | 0.644171 | 4.1:-44693469 | None:intergenic |
| AGCTGCCCGATACGGAAACA+TGG | 0.663958 | 4.1:+44693646 | MS.gene03828:CDS |
| TATGTTTAAGTTCCTCCCGG+AGG | 0.687323 | 4.1:+44693715 | MS.gene03828:CDS |
| GAGTGCGGTGGTCTTCGTCG+TGG | 0.692841 | 4.1:-44693181 | None:intergenic |
| GGGATTTGGAAATGGAAAGG+CGG | 0.694877 | 4.1:-44693413 | None:intergenic |
| GTGGTGAGTTTGGAGTGCGG+TGG | 0.710571 | 4.1:-44693193 | None:intergenic |
| AAAGCGGCGAATATCATCGG+GGG | 0.716596 | 4.1:-44693453 | None:intergenic |
| CCGGTTTAAGATCCTCCGGG+AGG | 0.720116 | 4.1:-44693727 | None:intergenic |
| TATGTTGGATGATATTAGTG+GGG | 0.749431 | 4.1:+44694177 | MS.gene03828:CDS |
| GAAAGCGGCGAATATCATCG+GGG | 0.758785 | 4.1:-44693454 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTTGCCGTTTATATTT+GGG | + | chr4.1:44694005-44694024 | MS.gene03828:CDS | 20.0% |
| ! | AAAAGAAAATGCTGCATAAT+AGG | - | chr4.1:44694271-44694290 | None:intergenic | 25.0% |
| ! | GATTCATAACAAGGATATAT+TGG | + | chr4.1:44694069-44694088 | MS.gene03828:CDS | 25.0% |
| ! | TATCTTTATCTTGCTTGTAT+TGG | + | chr4.1:44694109-44694128 | MS.gene03828:CDS | 25.0% |
| !! | ATTATGCAGCATTTTCTTTT+TGG | + | chr4.1:44694271-44694290 | MS.gene03828:CDS | 25.0% |
| !! | TGAAATTGTTCCGTATTTTT+CGG | + | chr4.1:44693757-44693776 | MS.gene03828:CDS | 25.0% |
| !!! | CATTTTTTGCCGTTTATATT+TGG | + | chr4.1:44694004-44694023 | MS.gene03828:CDS | 25.0% |
| !!! | TAGTGTTAATTGTTTCTGAT+TGG | - | chr4.1:44693568-44693587 | None:intergenic | 25.0% |
| !!! | TTTTTGGTTCCCTTATTAAA+TGG | + | chr4.1:44694287-44694306 | MS.gene03828:CDS | 25.0% |
| AATTGGAAGAAGGTTAATAG+TGG | + | chr4.1:44694205-44694224 | MS.gene03828:CDS | 30.0% | |
| ATTGATGAGAAAGTTGCAAT+TGG | + | chr4.1:44693928-44693947 | MS.gene03828:CDS | 30.0% | |
| CTATGTTGGATGATATTAGT+GGG | + | chr4.1:44694176-44694195 | MS.gene03828:CDS | 30.0% | |
| CTATTAACCTTCTTCCAATT+CGG | - | chr4.1:44694205-44694224 | None:intergenic | 30.0% | |
| TATGTTGGATGATATTAGTG+GGG | + | chr4.1:44694177-44694196 | MS.gene03828:CDS | 30.0% | |
| TGGAATTTCATCAATCCATA+GGG | - | chr4.1:44693615-44693634 | None:intergenic | 30.0% | |
| ! | GTTGCAATTGGTTTATTGTT+TGG | + | chr4.1:44693940-44693959 | MS.gene03828:CDS | 30.0% |
| ! | TCCTTGTTATGAATCGATTT+CGG | - | chr4.1:44694064-44694083 | None:intergenic | 30.0% |
| !! | TGTTAATTGTTTCTGATTGG+TGG | - | chr4.1:44693565-44693584 | None:intergenic | 30.0% |
| !!! | TTGTATTGGTTTTGTGATGA+AGG | + | chr4.1:44694123-44694142 | MS.gene03828:CDS | 30.0% |
| AGCACGCATACCATTTAATA+AGG | - | chr4.1:44694300-44694319 | None:intergenic | 35.0% | |
| CCACTAATATCATCCAACAT+AGG | - | chr4.1:44694178-44694197 | None:intergenic | 35.0% | |
| CCGAAACTATCCGAAAAATA+CGG | - | chr4.1:44693770-44693789 | None:intergenic | 35.0% | |
| CCTATGTTGGATGATATTAG+TGG | + | chr4.1:44694175-44694194 | MS.gene03828:CDS | 35.0% | |
| CTTAAACATAAGGGATTCAC+CGG | - | chr4.1:44693705-44693724 | None:intergenic | 35.0% | |
| GATGTATAAAGCTGAAGTCT+TGG | + | chr4.1:44694237-44694256 | MS.gene03828:CDS | 35.0% | |
| GCACGCATACCATTTAATAA+GGG | - | chr4.1:44694299-44694318 | None:intergenic | 35.0% | |
| GTGGAATTTCATCAATCCAT+AGG | - | chr4.1:44693616-44693635 | None:intergenic | 35.0% | |
| TGTACTGTTTGGCTAGATTA+GGG | + | chr4.1:44693846-44693865 | MS.gene03828:CDS | 35.0% | |
| TTCATCAATCCATAGGGTTA+GGG | - | chr4.1:44693609-44693628 | None:intergenic | 35.0% | |
| TTGTACTGTTTGGCTAGATT+AGG | + | chr4.1:44693845-44693864 | MS.gene03828:CDS | 35.0% | |
| TTTCATCAATCCATAGGGTT+AGG | - | chr4.1:44693610-44693629 | None:intergenic | 35.0% | |
| TTTGTGATGAAGGTGAAGAA+GGG | + | chr4.1:44694133-44694152 | MS.gene03828:CDS | 35.0% | |
| ! | AGTGAAGTTTTTACCGGAAT+CGG | - | chr4.1:44693486-44693505 | None:intergenic | 35.0% |
| ! | GAATCCAGTGAAGTTTTTAC+CGG | - | chr4.1:44693492-44693511 | None:intergenic | 35.0% |
| ! | TTTTGTGATGAAGGTGAAGA+AGG | + | chr4.1:44694132-44694151 | MS.gene03828:CDS | 35.0% |
| !! | CCGTATTTTTCGGATAGTTT+CGG | + | chr4.1:44693767-44693786 | MS.gene03828:CDS | 35.0% |
| ACTGGGATTTGGAAATGGAA+AGG | - | chr4.1:44693419-44693438 | None:intergenic | 40.0% | |
| ATAAGCCATGTTTCCGTATC+GGG | - | chr4.1:44693654-44693673 | None:intergenic | 40.0% | |
| ATGAAACAAATTTCGCGGCT+TGG | + | chr4.1:44693822-44693841 | MS.gene03828:CDS | 40.0% | |
| CGGGAGGAACTTAAACATAA+GGG | - | chr4.1:44693714-44693733 | None:intergenic | 40.0% | |
| GATAAGCCATGTTTCCGTAT+CGG | - | chr4.1:44693655-44693674 | None:intergenic | 40.0% | |
| GATTCCGGTAAAAACTTCAC+TGG | + | chr4.1:44693485-44693504 | MS.gene03828:CDS | 40.0% | |
| GATTGGTGAGGAAGATTATC+AGG | + | chr4.1:44693871-44693890 | MS.gene03828:CDS | 40.0% | |
| GGAACAATTTCAACTGTTGC+CGG | - | chr4.1:44693749-44693768 | None:intergenic | 40.0% | |
| GTACTGTTTGGCTAGATTAG+GGG | + | chr4.1:44693847-44693866 | MS.gene03828:CDS | 40.0% | |
| GTTTGACTGGGATTTGGAAA+TGG | - | chr4.1:44693424-44693443 | None:intergenic | 40.0% | |
| TAAAGCTGAAGTCTTGGAGA+AGG | + | chr4.1:44694243-44694262 | MS.gene03828:CDS | 40.0% | |
| TAAATGGTATGCGTGCTTCT+TGG | + | chr4.1:44694303-44694322 | MS.gene03828:CDS | 40.0% | |
| TGCGACGACCCAAATATAAA+CGG | - | chr4.1:44694016-44694035 | None:intergenic | 40.0% | |
| TTCTTGAAACCCTAACCCTA+TGG | + | chr4.1:44693597-44693616 | MS.gene03828:CDS | 40.0% | |
| ! | CCTTATGTTTAAGTTCCTCC+CGG | + | chr4.1:44693712-44693731 | MS.gene03828:CDS | 40.0% |
| ! | GCCGAAATCGATTCATAACA+AGG | + | chr4.1:44694060-44694079 | MS.gene03828:CDS | 40.0% |
| ! | GTTTATTGTTTGGAACCTGC+AGG | + | chr4.1:44693950-44693969 | MS.gene03828:CDS | 40.0% |
| !! | ATTGTTTCTGATTGGTGGCA+AGG | - | chr4.1:44693560-44693579 | None:intergenic | 40.0% |
| AGCCGGATTGATTATGGAAC+CGG | + | chr4.1:44693797-44693816 | MS.gene03828:CDS | 45.0% | |
| CCGGGAGGAACTTAAACATA+AGG | - | chr4.1:44693715-44693734 | None:intergenic | 45.0% | |
| CGGGCATGAAACAAATTTCG+CGG | + | chr4.1:44693817-44693836 | MS.gene03828:CDS | 45.0% | |
| GAAACATGGCTTATCGAACC+TGG | + | chr4.1:44693660-44693679 | MS.gene03828:CDS | 45.0% | |
| GGATTCGTTTGACTGGGATT+TGG | - | chr4.1:44693430-44693449 | None:intergenic | 45.0% | |
| GGGATTGGATTCGTTTGACT+GGG | - | chr4.1:44693436-44693455 | None:intergenic | 45.0% | |
| GGGATTTGGAAATGGAAAGG+CGG | - | chr4.1:44693416-44693435 | None:intergenic | 45.0% | |
| GTGAAAGCGGCGAATATCAT+CGG | - | chr4.1:44693459-44693478 | None:intergenic | 45.0% | |
| TAGATTAGGGGTGATTGGTG+AGG | + | chr4.1:44693859-44693878 | MS.gene03828:CDS | 45.0% | |
| TGAAAGCGGCGAATATCATC+GGG | - | chr4.1:44693458-44693477 | None:intergenic | 45.0% | |
| TGCAGGTTCACATGGTGTAT+GGG | + | chr4.1:44693967-44693986 | MS.gene03828:CDS | 45.0% | |
| TGCTGAGCATTCACCTATGT+TGG | + | chr4.1:44694162-44694181 | MS.gene03828:CDS | 45.0% | |
| TGGATTCATCGTCGCACTAT+CGG | + | chr4.1:44693505-44693524 | MS.gene03828:CDS | 45.0% | |
| TTACAACAAGCTGCCCGATA+CGG | + | chr4.1:44693638-44693657 | MS.gene03828:CDS | 45.0% | |
| TTGGCTAGATTAGGGGTGAT+TGG | + | chr4.1:44693854-44693873 | MS.gene03828:CDS | 45.0% | |
| ! | CGCGAAATTTGTTTCATGCC+CGG | - | chr4.1:44693819-44693838 | None:intergenic | 45.0% |
| ! | TATGTTTAAGTTCCTCCCGG+AGG | + | chr4.1:44693715-44693734 | MS.gene03828:CDS | 45.0% |
| !! | ATATTAGTGGGGTGCCGAAT+TGG | + | chr4.1:44694188-44694207 | MS.gene03828:CDS | 45.0% |
| !! | TATCGGGCAGCTTGTTGTAA+CGG | - | chr4.1:44693638-44693657 | None:intergenic | 45.0% |
| AAAGCGGCGAATATCATCGG+GGG | - | chr4.1:44693456-44693475 | None:intergenic | 50.0% | |
| AACGCGAGCCGGATTGATTA+TGG | + | chr4.1:44693791-44693810 | MS.gene03828:CDS | 50.0% | |
| ATAGTTTCGGTAACGCGAGC+CGG | + | chr4.1:44693780-44693799 | MS.gene03828:CDS | 50.0% | |
| ATGGAAAGGCGGTGAAGCAA+CGG | - | chr4.1:44693405-44693424 | None:intergenic | 50.0% | |
| CAGGTTCACATGGTGTATGG+GGG | + | chr4.1:44693969-44693988 | MS.gene03828:CDS | 50.0% | |
| CATACACCATGTGAACCTGC+AGG | - | chr4.1:44693968-44693987 | None:intergenic | 50.0% | |
| CTGCAGGTTCACATGGTGTA+TGG | + | chr4.1:44693966-44693985 | MS.gene03828:CDS | 50.0% | |
| GAAAGCGGCGAATATCATCG+GGG | - | chr4.1:44693457-44693476 | None:intergenic | 50.0% | |
| GCAGGTTCACATGGTGTATG+GGG | + | chr4.1:44693968-44693987 | MS.gene03828:CDS | 50.0% | |
| GCCCGGTTCCATAATCAATC+CGG | - | chr4.1:44693802-44693821 | None:intergenic | 50.0% | |
| GCCGGATTGATTATGGAACC+GGG | + | chr4.1:44693798-44693817 | MS.gene03828:CDS | 50.0% | |
| GGGGATTGGATTCGTTTGAC+TGG | - | chr4.1:44693437-44693456 | None:intergenic | 50.0% | |
| TGAAGCAACGGGAACGTGTT+GGG | - | chr4.1:44693393-44693412 | None:intergenic | 50.0% | |
| TTGGAACCTGCAGGTTCACA+TGG | + | chr4.1:44693959-44693978 | MS.gene03828:CDS | 50.0% | |
| ! | CACGAACGATTGGTCAGTTC+CGG | + | chr4.1:44693683-44693702 | MS.gene03828:CDS | 50.0% |
| !! | GTTGCCGGTTTAAGATCCTC+CGG | - | chr4.1:44693734-44693753 | None:intergenic | 50.0% |
| !! | TTGCCGGTTTAAGATCCTCC+GGG | - | chr4.1:44693733-44693752 | None:intergenic | 50.0% |
| ACTGACCAATCGTTCGTGCC+AGG | - | chr4.1:44693681-44693700 | None:intergenic | 55.0% | |
| AGCTGCCCGATACGGAAACA+TGG | + | chr4.1:44693646-44693665 | MS.gene03828:CDS | 55.0% | |
| CCTCCCGGAGGATCTTAAAC+CGG | + | chr4.1:44693727-44693746 | MS.gene03828:CDS | 55.0% | |
| CGCTTTCACGACTCCGATTC+CGG | + | chr4.1:44693470-44693489 | MS.gene03828:CDS | 55.0% | |
| CGGAATCGGAGTCGTGAAAG+CGG | - | chr4.1:44693472-44693491 | None:intergenic | 55.0% | |
| GGCGAATATCATCGGGGGAT+TGG | - | chr4.1:44693451-44693470 | None:intergenic | 55.0% | |
| GTGAAGCAACGGGAACGTGT+TGG | - | chr4.1:44693394-44693413 | None:intergenic | 55.0% | |
| TCGAACCTGGCACGAACGAT+TGG | + | chr4.1:44693673-44693692 | MS.gene03828:CDS | 55.0% | |
| TGGAAAGGCGGTGAAGCAAC+GGG | - | chr4.1:44693404-44693423 | None:intergenic | 55.0% | |
| TGGGGAGATTTCGGAGAAGG+CGG | - | chr4.1:44693282-44693301 | None:intergenic | 55.0% | |
| TGGTGGGGAGATTTCGGAGA+AGG | - | chr4.1:44693285-44693304 | None:intergenic | 55.0% | |
| ! | ATGATGGCGCGTTGGGAGTT+GGG | - | chr4.1:44693350-44693369 | None:intergenic | 55.0% |
| ! | TGGGTGGTGAGTTTGGAGTG+CGG | - | chr4.1:44693199-44693218 | None:intergenic | 55.0% |
| !! | ATTGGACGGTAGGTTGGTGG+TGG | - | chr4.1:44693302-44693321 | None:intergenic | 55.0% |
| !! | CGCGGCTTGGTTGTACTGTT+TGG | + | chr4.1:44693835-44693854 | MS.gene03828:CDS | 55.0% |
| !! | GGTTGGTGGTGGGGAGATTT+CGG | - | chr4.1:44693291-44693310 | None:intergenic | 55.0% |
| !! | TGGGGTGCCGAATTGGAAGA+AGG | + | chr4.1:44694195-44694214 | MS.gene03828:CDS | 55.0% |
| !! | TTGGACGGTAGGTTGGTGGT+GGG | - | chr4.1:44693301-44693320 | None:intergenic | 55.0% |
| ACGGGAACGTGTTGGGCTTG+TGG | - | chr4.1:44693386-44693405 | None:intergenic | 60.0% | |
| ACGTGTTGGGCTTGTGGGAC+CGG | - | chr4.1:44693380-44693399 | None:intergenic | 60.0% | |
| ATTTCGGAGAAGGCGGGGGA+AGG | - | chr4.1:44693275-44693294 | None:intergenic | 60.0% | |
| CCAAACTCACCACCCACCAC+CGG | + | chr4.1:44693203-44693222 | MS.gene03828:CDS | 60.0% | |
| CGGGAACGTGTTGGGCTTGT+GGG | - | chr4.1:44693385-44693404 | None:intergenic | 60.0% | |
| GCACTATCGGATTCCACGCG+CGG | + | chr4.1:44693518-44693537 | MS.gene03828:CDS | 60.0% | |
| GGAGATTTCGGAGAAGGCGG+GGG | - | chr4.1:44693279-44693298 | None:intergenic | 60.0% | |
| GGGAGATTTCGGAGAAGGCG+GGG | - | chr4.1:44693280-44693299 | None:intergenic | 60.0% | |
| GGGGAGATTTCGGAGAAGGC+GGG | - | chr4.1:44693281-44693300 | None:intergenic | 60.0% | |
| ! | AGAGATTTTGCGACCGCGCG+TGG | - | chr4.1:44693534-44693553 | None:intergenic | 60.0% |
| ! | AGCGAGGATGATGGCGCGTT+GGG | - | chr4.1:44693357-44693376 | None:intergenic | 60.0% |
| ! | CCGGTTTAAGATCCTCCGGG+AGG | - | chr4.1:44693730-44693749 | None:intergenic | 60.0% |
| ! | CGGATTGGACGGTAGGTTGG+TGG | - | chr4.1:44693305-44693324 | None:intergenic | 60.0% |
| ! | GATGATGGCGCGTTGGGAGT+TGG | - | chr4.1:44693351-44693370 | None:intergenic | 60.0% |
| ! | GGTGGTGGTGCGAAGGTTGT+TGG | - | chr4.1:44693251-44693270 | None:intergenic | 60.0% |
| ! | GTGGTGAGTTTGGAGTGCGG+TGG | - | chr4.1:44693196-44693215 | None:intergenic | 60.0% |
| ! | TGATGGCGCGTTGGGAGTTG+GGG | - | chr4.1:44693349-44693368 | None:intergenic | 60.0% |
| !! | CGGGCAGCTTGTTGTAACGG+TGG | - | chr4.1:44693635-44693654 | None:intergenic | 60.0% |
| !! | TGGACGGTAGGTTGGTGGTG+GGG | - | chr4.1:44693300-44693319 | None:intergenic | 60.0% |
| ACCGGCACCTGCTGCAAGTG+CGG | + | chr4.1:44693221-44693240 | MS.gene03828:CDS | 65.0% | |
| ACGCGCCATCATCCTCGCTC+CGG | + | chr4.1:44693358-44693377 | MS.gene03828:CDS | 65.0% | |
| CTACCGTCCAATCCGCGCTC+CGG | + | chr4.1:44693310-44693329 | MS.gene03828:CDS | 65.0% | |
| GAGTGCGGTGGTCTTCGTCG+TGG | - | chr4.1:44693184-44693203 | None:intergenic | 65.0% | |
| GGTGGTCTTCGTCGTGGTGG+TGG | - | chr4.1:44693178-44693197 | None:intergenic | 65.0% | |
| GTTGGGAGTTGGGGTCCGGT+GGG | - | chr4.1:44693340-44693359 | None:intergenic | 65.0% | |
| TGCGGTGGTCTTCGTCGTGG+TGG | - | chr4.1:44693181-44693200 | None:intergenic | 65.0% | |
| TGGGACCGGAGCGAGGATGA+TGG | - | chr4.1:44693366-44693385 | None:intergenic | 65.0% | |
| ! | GAGCGAGGATGATGGCGCGT+TGG | - | chr4.1:44693358-44693377 | None:intergenic | 65.0% |
| !! | CCGGTGGTGGGTGGTGAGTT+TGG | - | chr4.1:44693206-44693225 | None:intergenic | 65.0% |
| !! | CTTCGTCGTGGTGGTGGTGG+TGG | - | chr4.1:44693172-44693191 | None:intergenic | 65.0% |
| !! | GCGCGGATTGGACGGTAGGT+TGG | - | chr4.1:44693308-44693327 | None:intergenic | 65.0% |
| !! | GGAAGGTGGTGGTGGTGCGA+AGG | - | chr4.1:44693258-44693277 | None:intergenic | 65.0% |
| !! | GGTCTTCGTCGTGGTGGTGG+TGG | - | chr4.1:44693175-44693194 | None:intergenic | 65.0% |
| !! | TTGCAGCAGGTGCCGGTGGT+GGG | - | chr4.1:44693218-44693237 | None:intergenic | 65.0% |
| CGTTGGGAGTTGGGGTCCGG+TGG | - | chr4.1:44693341-44693360 | None:intergenic | 70.0% | |
| GAGAAGGCGGGGGAAGGTGG+TGG | - | chr4.1:44693269-44693288 | None:intergenic | 70.0% | |
| GCCGCACTTGCAGCAGGTGC+CGG | - | chr4.1:44693225-44693244 | None:intergenic | 70.0% | |
| GCGCGTTGGGAGTTGGGGTC+CGG | - | chr4.1:44693344-44693363 | None:intergenic | 70.0% | |
| GGCACCTGCTGCAAGTGCGG+CGG | + | chr4.1:44693224-44693243 | MS.gene03828:CDS | 70.0% | |
| TCGGAGAAGGCGGGGGAAGG+TGG | - | chr4.1:44693272-44693291 | None:intergenic | 70.0% | |
| TGGACCGCCGCACTTGCAGC+AGG | - | chr4.1:44693231-44693250 | None:intergenic | 70.0% | |
| TTGGGGTCCGGTGGGATCGC+CGG | - | chr4.1:44693332-44693351 | None:intergenic | 70.0% | |
| ! | AAGGCGGGGGAAGGTGGTGG+TGG | - | chr4.1:44693266-44693285 | None:intergenic | 70.0% |
| !! | CGGAGCGCGGATTGGACGGT+AGG | - | chr4.1:44693312-44693331 | None:intergenic | 70.0% |
| !! | CGTCGTGGTGGTGGTGGTGG+TGG | - | chr4.1:44693169-44693188 | None:intergenic | 70.0% |
| !! | CTTGCAGCAGGTGCCGGTGG+TGG | - | chr4.1:44693219-44693238 | None:intergenic | 70.0% |
| !! | GCACTTGCAGCAGGTGCCGG+TGG | - | chr4.1:44693222-44693241 | None:intergenic | 70.0% |
| !! | TCGCCGGAGCGCGGATTGGA+CGG | - | chr4.1:44693316-44693335 | None:intergenic | 70.0% |
| GGGATCGCCGGAGCGCGGAT+TGG | - | chr4.1:44693320-44693339 | None:intergenic | 75.0% | |
| GGGCTTGTGGGACCGGAGCG+AGG | - | chr4.1:44693373-44693392 | None:intergenic | 75.0% | |
| !! | CAGCAGGTGCCGGTGGTGGG+TGG | - | chr4.1:44693215-44693234 | None:intergenic | 75.0% |
| ! | CCGCGCTCCGGCGATCCCAC+CGG | + | chr4.1:44693322-44693341 | MS.gene03828:CDS | 80.0% |
| ! | CCGGTGGGATCGCCGGAGCG+CGG | - | chr4.1:44693325-44693344 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 44693149 | 44694369 | 44693149 | ID=MS.gene03828 |
| chr4.1 | mRNA | 44693149 | 44694369 | 44693149 | ID=MS.gene03828.t1;Parent=MS.gene03828 |
| chr4.1 | exon | 44693149 | 44694369 | 44693149 | ID=MS.gene03828.t1.exon1;Parent=MS.gene03828.t1 |
| chr4.1 | CDS | 44693149 | 44694369 | 44693149 | ID=cds.MS.gene03828.t1;Parent=MS.gene03828.t1 |
| Gene Sequence |
| Protein sequence |
