Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038480.t1 | PNX97012.1 | 78.4 | 334 | 72 | 0 | 1 | 334 | 1 | 334 | 7.80E-155 | 556.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038480.t1 | Q8L5A7 | 49.2 | 325 | 162 | 2 | 12 | 334 | 33 | 356 | 3.0e-94 | 346.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038480.t1 | A0A2K3N1W7 | 78.4 | 334 | 72 | 0 | 1 | 334 | 1 | 334 | 5.6e-155 | 556.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene53169 | MS.gene038480 | PPI |
| MS.gene99693 | MS.gene038480 | PPI |
| MS.gene55382 | MS.gene038480 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038480.t1 | MTR_3g435130 | 78.209 | 335 | 71 | 2 | 1 | 334 | 1 | 334 | 0.0 | 545 |
| MS.gene038480.t1 | MTR_8g066220 | 76.048 | 334 | 79 | 1 | 1 | 334 | 1 | 333 | 0.0 | 531 |
| MS.gene038480.t1 | MTR_8g066210 | 74.251 | 334 | 70 | 2 | 1 | 334 | 1 | 318 | 1.63e-180 | 502 |
| MS.gene038480.t1 | MTR_0071s0010 | 72.256 | 328 | 90 | 1 | 8 | 334 | 6 | 333 | 8.74e-178 | 495 |
| MS.gene038480.t1 | MTR_3g046670 | 72.256 | 328 | 90 | 1 | 8 | 334 | 6 | 333 | 8.74e-178 | 495 |
| MS.gene038480.t1 | MTR_8g066280 | 94.681 | 188 | 10 | 0 | 147 | 334 | 22 | 209 | 1.89e-132 | 376 |
| MS.gene038480.t1 | MTR_3g013500 | 51.887 | 318 | 153 | 0 | 17 | 334 | 20 | 337 | 1.60e-122 | 355 |
| MS.gene038480.t1 | MTR_7g007710 | 50.943 | 318 | 151 | 4 | 21 | 334 | 16 | 332 | 7.99e-117 | 341 |
| MS.gene038480.t1 | MTR_7g007680 | 48.580 | 317 | 155 | 4 | 21 | 334 | 22 | 333 | 6.08e-113 | 333 |
| MS.gene038480.t1 | MTR_8g040820 | 48.113 | 318 | 161 | 3 | 21 | 334 | 27 | 344 | 9.44e-112 | 328 |
| MS.gene038480.t1 | MTR_8g040490 | 45.794 | 321 | 171 | 2 | 17 | 334 | 23 | 343 | 3.93e-105 | 313 |
| MS.gene038480.t1 | MTR_8g035720 | 46.313 | 339 | 167 | 4 | 1 | 334 | 78 | 406 | 2.28e-104 | 312 |
| MS.gene038480.t1 | MTR_8g040430 | 45.706 | 326 | 172 | 3 | 14 | 334 | 20 | 345 | 1.94e-103 | 307 |
| MS.gene038480.t1 | MTR_8g040520 | 49.527 | 317 | 153 | 4 | 17 | 329 | 23 | 336 | 6.64e-102 | 303 |
| MS.gene038480.t1 | MTR_3g434790 | 80.447 | 179 | 35 | 0 | 156 | 334 | 56 | 234 | 8.98e-102 | 299 |
| MS.gene038480.t1 | MTR_3g434790 | 85.965 | 57 | 8 | 0 | 1 | 57 | 1 | 57 | 1.28e-26 | 105 |
| MS.gene038480.t1 | MTR_8g041790 | 45.593 | 329 | 153 | 7 | 14 | 334 | 15 | 325 | 5.08e-96 | 288 |
| MS.gene038480.t1 | MTR_8g040250 | 50.593 | 253 | 117 | 5 | 86 | 334 | 45 | 293 | 3.41e-86 | 262 |
| MS.gene038480.t1 | MTR_8g014380 | 43.960 | 298 | 127 | 5 | 17 | 312 | 22 | 281 | 6.11e-81 | 248 |
| MS.gene038480.t1 | MTR_8g040820 | 49.554 | 224 | 109 | 3 | 115 | 334 | 22 | 245 | 2.62e-76 | 234 |
| MS.gene038480.t1 | MTR_8g040430 | 48.402 | 219 | 109 | 2 | 120 | 334 | 27 | 245 | 1.47e-70 | 220 |
| MS.gene038480.t1 | MTR_8g040730 | 50.838 | 179 | 80 | 5 | 79 | 252 | 39 | 214 | 1.11e-46 | 166 |
| MS.gene038480.t1 | MTR_8g040730 | 46.795 | 156 | 78 | 3 | 23 | 176 | 343 | 495 | 7.45e-39 | 144 |
| MS.gene038480.t1 | MTR_8g040710 | 49.664 | 149 | 73 | 1 | 178 | 324 | 134 | 282 | 1.52e-43 | 151 |
| MS.gene038480.t1 | MTR_8g066190 | 64.220 | 109 | 21 | 1 | 226 | 334 | 2 | 92 | 3.36e-38 | 131 |
| MS.gene038480.t1 | MTR_8g040315 | 43.511 | 131 | 73 | 1 | 204 | 334 | 3 | 132 | 2.09e-27 | 104 |
| MS.gene038480.t1 | MTR_8g040410 | 37.079 | 89 | 38 | 1 | 218 | 306 | 75 | 145 | 1.83e-14 | 70.1 |
| MS.gene038480.t1 | MTR_8g040410 | 46.667 | 60 | 30 | 1 | 67 | 124 | 21 | 80 | 4.49e-12 | 63.5 |
| MS.gene038480.t1 | MTR_8g066200 | 77.778 | 36 | 8 | 0 | 152 | 187 | 25 | 60 | 4.92e-14 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038480.t1 | AT5G07010 | 49.538 | 325 | 161 | 3 | 12 | 334 | 33 | 356 | 3.42e-116 | 340 |
| MS.gene038480.t1 | AT3G45070 | 51.899 | 316 | 150 | 2 | 20 | 334 | 14 | 328 | 6.15e-113 | 331 |
| MS.gene038480.t1 | AT3G45070 | 51.899 | 316 | 150 | 2 | 20 | 334 | 41 | 355 | 7.66e-113 | 332 |
| MS.gene038480.t1 | AT3G45070 | 51.899 | 316 | 150 | 2 | 20 | 334 | 9 | 323 | 7.70e-113 | 330 |
| MS.gene038480.t1 | AT5G07000 | 48.447 | 322 | 161 | 3 | 17 | 334 | 24 | 344 | 7.12e-109 | 321 |
| MS.gene038480.t1 | AT2G03760 | 50.765 | 327 | 154 | 3 | 9 | 334 | 4 | 324 | 2.82e-108 | 319 |
| MS.gene038480.t1 | AT2G03770 | 47.678 | 323 | 161 | 1 | 12 | 334 | 8 | 322 | 6.47e-106 | 313 |
| MS.gene038480.t1 | AT3G45080 | 51.104 | 317 | 152 | 3 | 20 | 334 | 14 | 329 | 1.23e-104 | 310 |
| MS.gene038480.t1 | AT1G13420 | 50.482 | 311 | 147 | 4 | 26 | 334 | 26 | 331 | 8.73e-101 | 300 |
| MS.gene038480.t1 | AT5G43690 | 45.858 | 338 | 172 | 5 | 1 | 334 | 1 | 331 | 4.27e-97 | 291 |
| MS.gene038480.t1 | AT1G28170 | 47.879 | 330 | 166 | 5 | 7 | 334 | 1 | 326 | 5.39e-96 | 288 |
| MS.gene038480.t1 | AT2G03750 | 45.872 | 327 | 175 | 2 | 8 | 334 | 26 | 350 | 8.73e-95 | 285 |
| MS.gene038480.t1 | AT4G26280 | 46.815 | 314 | 147 | 2 | 16 | 327 | 7 | 302 | 8.68e-94 | 281 |
| MS.gene038480.t1 | AT2G14920 | 45.223 | 314 | 165 | 3 | 26 | 334 | 22 | 333 | 2.49e-91 | 276 |
| MS.gene038480.t1 | AT1G18590 | 43.027 | 337 | 178 | 6 | 4 | 332 | 11 | 341 | 5.52e-89 | 270 |
| MS.gene038480.t1 | AT1G74100 | 42.994 | 314 | 166 | 5 | 26 | 332 | 26 | 333 | 7.74e-86 | 262 |
| MS.gene038480.t1 | AT1G13430 | 43.293 | 328 | 165 | 4 | 26 | 334 | 26 | 351 | 4.33e-82 | 253 |
| MS.gene038480.t1 | AT1G74090 | 46.032 | 315 | 155 | 7 | 26 | 332 | 38 | 345 | 1.91e-81 | 251 |
| MS.gene038480.t1 | AT2G27570 | 40.752 | 319 | 134 | 3 | 16 | 334 | 10 | 273 | 8.01e-77 | 237 |
Find 65 sgRNAs with CRISPR-Local
Find 86 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATTCTCTTGTTCCCTTCT+TGG | 0.032882 | 8.4:-36321242 | MS.gene038480:CDS |
| TCCATCAATACCAAGGATTT+TGG | 0.169594 | 8.4:-36321453 | MS.gene038480:CDS |
| GTTGACTCTTTCACAGAATT+TGG | 0.172783 | 8.4:+36321124 | None:intergenic |
| ACCTTTGGATTCTTCTTCTT+TGG | 0.195487 | 8.4:+36320811 | None:intergenic |
| TCATATTCTTGCAAGTATTT+TGG | 0.200521 | 8.4:+36321544 | None:intergenic |
| GGATGGTTGTTATGAATAAT+TGG | 0.211346 | 8.4:+36321283 | None:intergenic |
| AGCCAAGTGGTACCTGCTTT+TGG | 0.223091 | 8.4:+36321346 | None:intergenic |
| CACTATCACTGAAAGTAAAT+TGG | 0.250645 | 8.4:-36320621 | MS.gene038480:CDS |
| TGTAGAGGCACGAGTTCTTT+TGG | 0.305700 | 8.4:-36320977 | MS.gene038480:CDS |
| CCCACATTGCCATTAGAAAA+AGG | 0.310786 | 8.4:-36321493 | MS.gene038480:CDS |
| CGATATCTTTGTCGTAATAA+AGG | 0.312455 | 8.4:+36321212 | None:intergenic |
| GGGAGCATGTATTGGGATAT+TGG | 0.323106 | 8.4:-36320946 | MS.gene038480:CDS |
| GCCAAAATCCTTGGTATTGA+TGG | 0.341469 | 8.4:+36321452 | None:intergenic |
| CTCTCAAAAGCCTCTTCTAA+TGG | 0.341934 | 8.4:+36321004 | None:intergenic |
| GATTCTTCTTCTTTGGAGAA+TGG | 0.353738 | 8.4:+36320818 | None:intergenic |
| TATATCATCAACCATACCTT+TGG | 0.361458 | 8.4:+36320796 | None:intergenic |
| GAATAATTGGATATTTCTTT+CGG | 0.362621 | 8.4:+36321296 | None:intergenic |
| GAATTTGGCAATGATTCATA+TGG | 0.375182 | 8.4:+36321139 | None:intergenic |
| TGCGAAACAAAAGTGTCTTT+AGG | 0.416608 | 8.4:+36321073 | None:intergenic |
| CTAAGAGAATATCGGTATCA+AGG | 0.435514 | 8.4:+36321377 | None:intergenic |
| GGGATATTGGAAGGAAAGCT+TGG | 0.445940 | 8.4:-36320933 | MS.gene038480:CDS |
| TGCAATCTCCAACTCGGCCT+AGG | 0.445986 | 8.4:+36320681 | None:intergenic |
| CAAGAAGGGAACAAGAGAAT+GGG | 0.448312 | 8.4:+36321243 | None:intergenic |
| GGGAACAAGAGAATGGGGAT+TGG | 0.451880 | 8.4:+36321249 | None:intergenic |
| ATATGTGTAGAGAAGAGTCT+TGG | 0.476489 | 8.4:+36321163 | None:intergenic |
| CCAAGAAGGGAACAAGAGAA+TGG | 0.483836 | 8.4:+36321242 | None:intergenic |
| TGAGAAACTGAGCAATTTGG+AGG | 0.497949 | 8.4:-36320756 | MS.gene038480:CDS |
| GGTGACAATAAGTTGAGATC+AGG | 0.499776 | 8.4:+36321187 | None:intergenic |
| TGTGTAGAGAAGAGTCTTGG+AGG | 0.507788 | 8.4:+36321166 | None:intergenic |
| ACTTGCAAGAATATGACTTA+GGG | 0.511991 | 8.4:-36321537 | MS.gene038480:CDS |
| TACTTGCAAGAATATGACTT+AGG | 0.513028 | 8.4:-36321538 | MS.gene038480:CDS |
| CCCAATACATGCTCCCAAAA+CGG | 0.522995 | 8.4:+36320953 | None:intergenic |
| CTCCAAAAGCAGGTACCACT+TGG | 0.530830 | 8.4:-36321348 | MS.gene038480:CDS |
| TAAGAGAATATCGGTATCAA+GGG | 0.531716 | 8.4:+36321378 | None:intergenic |
| AGTGGTAACTAAGAGAATAT+CGG | 0.539079 | 8.4:+36321369 | None:intergenic |
| TGGGGATTGGAAGTGAGTAA+AGG | 0.540519 | 8.4:+36321262 | None:intergenic |
| AGAAGAAGAATCCAAAGGTA+TGG | 0.542144 | 8.4:-36320807 | MS.gene038480:CDS |
| AAAGCCTCTTCTAATGGAAG+TGG | 0.546874 | 8.4:+36321010 | None:intergenic |
| GTACCACTTGGCTCAAAGCA+TGG | 0.551523 | 8.4:-36321336 | MS.gene038480:CDS |
| TGACTTAGGGCAAGAATGCA+AGG | 0.558189 | 8.4:-36321524 | MS.gene038480:CDS |
| TTGTGGCAAGCCAAAATCCT+TGG | 0.564001 | 8.4:+36321443 | None:intergenic |
| ATAAAGGTCATACTCCAAGA+AGG | 0.564290 | 8.4:+36321228 | None:intergenic |
| AATTTGGAGGTCAATAAGAC+GGG | 0.570312 | 8.4:-36320743 | MS.gene038480:CDS |
| AGCTAAGAGCACAAAGTAGA+GGG | 0.573158 | 8.4:-36321033 | MS.gene038480:CDS |
| TTAGTTACCACTCCAAAAGC+AGG | 0.574786 | 8.4:-36321358 | MS.gene038480:CDS |
| TTTGACAAGATAAAACACCT+TGG | 0.581098 | 8.4:+36321413 | None:intergenic |
| GCATGTATTGGGATATTGGA+AGG | 0.583242 | 8.4:-36320942 | MS.gene038480:CDS |
| CAATTTGGAGGTCAATAAGA+CGG | 0.583292 | 8.4:-36320744 | MS.gene038480:CDS |
| AAGCTAAGAGCACAAAGTAG+AGG | 0.584923 | 8.4:-36321034 | MS.gene038480:CDS |
| AAGCTTGGAAAGGCCAGAGA+AGG | 0.595580 | 8.4:-36320918 | MS.gene038480:CDS |
| GAAAGTAAATTGGCTACACA+TGG | 0.597619 | 8.4:-36320611 | MS.gene038480:CDS |
| TAAAGGTCATACTCCAAGAA+GGG | 0.598614 | 8.4:+36321229 | None:intergenic |
| AGGGCCACTTCCATTAGAAG+AGG | 0.601704 | 8.4:-36321014 | MS.gene038480:CDS |
| CTTGCCACAAGGATTCTCCA+AGG | 0.641069 | 8.4:-36321430 | MS.gene038480:CDS |
| AAGAAGGGAACAAGAGAATG+GGG | 0.641846 | 8.4:+36321244 | None:intergenic |
| GATTGGAAGTGAGTAAAGGA+TGG | 0.644416 | 8.4:+36321266 | None:intergenic |
| AGTCCATGCTTTGAGCCAAG+TGG | 0.645676 | 8.4:+36321333 | None:intergenic |
| TCCTACTTCCATCAATACCA+AGG | 0.653031 | 8.4:-36321460 | MS.gene038480:CDS |
| TCCTTGGTATTGATGGAAGT+AGG | 0.653788 | 8.4:+36321459 | None:intergenic |
| GAAAGAGTCAACTTGCAAGA+TGG | 0.659617 | 8.4:-36321113 | MS.gene038480:CDS |
| AATCTCCAACTCGGCCTAGG+CGG | 0.662720 | 8.4:+36320684 | None:intergenic |
| TCCAAAGAAGAAGAATCCAA+AGG | 0.663515 | 8.4:-36320812 | MS.gene038480:CDS |
| AACACCTTGGAGAATCCTTG+TGG | 0.666075 | 8.4:+36321426 | None:intergenic |
| ATTGGAAGGAAAGCTTGGAA+AGG | 0.672349 | 8.4:-36320928 | MS.gene038480:CDS |
| AAAGTAAATTGGCTACACAT+GGG | 0.678157 | 8.4:-36320610 | MS.gene038480:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATCTCTTTCAAATAAAAATT+AGG | + | chr8.4:36321321-36321340 | None:intergenic | 15.0% |
| !! | GAATAATTGGATATTTCTTT+CGG | + | chr8.4:36320885-36320904 | None:intergenic | 20.0% |
| !! | AAAGAGATTGCTAAGTTTTT+GGG | - | chr8.4:36321333-36321352 | MS.gene038480:CDS | 25.0% |
| !! | TCATATTCTTGCAAGTATTT+TGG | + | chr8.4:36320637-36320656 | None:intergenic | 25.0% |
| AAAGTAAATTGGCTACACAT+GGG | - | chr8.4:36321568-36321587 | MS.gene038480:CDS | 30.0% | |
| ACTTGCAAGAATATGACTTA+GGG | - | chr8.4:36320641-36320660 | MS.gene038480:CDS | 30.0% | |
| AGTGGTAACTAAGAGAATAT+CGG | + | chr8.4:36320812-36320831 | None:intergenic | 30.0% | |
| CACTATCACTGAAAGTAAAT+TGG | - | chr8.4:36321557-36321576 | MS.gene038480:CDS | 30.0% | |
| CGATATCTTTGTCGTAATAA+AGG | + | chr8.4:36320969-36320988 | None:intergenic | 30.0% | |
| GAATTTGGCAATGATTCATA+TGG | + | chr8.4:36321042-36321061 | None:intergenic | 30.0% | |
| GGATGGTTGTTATGAATAAT+TGG | + | chr8.4:36320898-36320917 | None:intergenic | 30.0% | |
| TAAGAGAATATCGGTATCAA+GGG | + | chr8.4:36320803-36320822 | None:intergenic | 30.0% | |
| TACTTGCAAGAATATGACTT+AGG | - | chr8.4:36320640-36320659 | MS.gene038480:CDS | 30.0% | |
| TATATCATCAACCATACCTT+TGG | + | chr8.4:36321385-36321404 | None:intergenic | 30.0% | |
| TTTGACAAGATAAAACACCT+TGG | + | chr8.4:36320768-36320787 | None:intergenic | 30.0% | |
| ! | GAAAGAGATTGCTAAGTTTT+TGG | - | chr8.4:36321332-36321351 | MS.gene038480:CDS | 30.0% |
| ! | GGGAAAAGTTTCTTTTGATA+TGG | - | chr8.4:36321455-36321474 | MS.gene038480:CDS | 30.0% |
| ! | GTAATCCATCCTTTTTCTAA+TGG | + | chr8.4:36320697-36320716 | None:intergenic | 30.0% |
| !! | TTTTGAGAAACTGAGCAATT+TGG | - | chr8.4:36321419-36321438 | MS.gene038480:CDS | 30.0% |
| AATTTGGAGGTCAATAAGAC+GGG | - | chr8.4:36321435-36321454 | MS.gene038480:CDS | 35.0% | |
| ACCTTTGGATTCTTCTTCTT+TGG | + | chr8.4:36321370-36321389 | None:intergenic | 35.0% | |
| AGAAGAAGAATCCAAAGGTA+TGG | - | chr8.4:36321371-36321390 | MS.gene038480:CDS | 35.0% | |
| ATAAAGGTCATACTCCAAGA+AGG | + | chr8.4:36320953-36320972 | None:intergenic | 35.0% | |
| ATATGTGTAGAGAAGAGTCT+TGG | + | chr8.4:36321018-36321037 | None:intergenic | 35.0% | |
| CAATTTGGAGGTCAATAAGA+CGG | - | chr8.4:36321434-36321453 | MS.gene038480:CDS | 35.0% | |
| CATTGCCATTAGAAAAAGGA+TGG | - | chr8.4:36320689-36320708 | MS.gene038480:CDS | 35.0% | |
| CTAAGAGAATATCGGTATCA+AGG | + | chr8.4:36320804-36320823 | None:intergenic | 35.0% | |
| GAAAGTAAATTGGCTACACA+TGG | - | chr8.4:36321567-36321586 | MS.gene038480:CDS | 35.0% | |
| TAAAGGTCATACTCCAAGAA+GGG | + | chr8.4:36320952-36320971 | None:intergenic | 35.0% | |
| TCCAAAGAAGAAGAATCCAA+AGG | - | chr8.4:36321366-36321385 | MS.gene038480:CDS | 35.0% | |
| TTCAAAAACATCACCTTCTC+TGG | + | chr8.4:36321276-36321295 | None:intergenic | 35.0% | |
| ! | CATTTTTGCAATCTCCAACT+CGG | + | chr8.4:36321506-36321525 | None:intergenic | 35.0% |
| ! | CCTTTTTCTAATGGCAATGT+GGG | + | chr8.4:36320688-36320707 | None:intergenic | 35.0% |
| ! | GATTCTTCTTCTTTGGAGAA+TGG | + | chr8.4:36321363-36321382 | None:intergenic | 35.0% |
| ! | GTTGACTCTTTCACAGAATT+TGG | + | chr8.4:36321057-36321076 | None:intergenic | 35.0% |
| ! | TCCATCAATACCAAGGATTT+TGG | - | chr8.4:36320725-36320744 | MS.gene038480:CDS | 35.0% |
| ! | TCCTTTTTCTAATGGCAATG+TGG | + | chr8.4:36320689-36320708 | None:intergenic | 35.0% |
| !! | AAGACACTTTTGTTTCGCAT+TGG | - | chr8.4:36321109-36321128 | MS.gene038480:CDS | 35.0% |
| !! | GCTTTTGAGAGTTTTTGTAG+AGG | - | chr8.4:36321186-36321205 | MS.gene038480:CDS | 35.0% |
| !! | TGCGAAACAAAAGTGTCTTT+AGG | + | chr8.4:36321108-36321127 | None:intergenic | 35.0% |
| !!! | AACAAATACTTTTTCCGCCT+AGG | - | chr8.4:36321480-36321499 | MS.gene038480:CDS | 35.0% |
| AAAGCCTCTTCTAATGGAAG+TGG | + | chr8.4:36321171-36321190 | None:intergenic | 40.0% | |
| AAGAAGGGAACAAGAGAATG+GGG | + | chr8.4:36320937-36320956 | None:intergenic | 40.0% | |
| ATTGGAAGGAAAGCTTGGAA+AGG | - | chr8.4:36321250-36321269 | MS.gene038480:CDS | 40.0% | |
| CAAGAAGGGAACAAGAGAAT+GGG | + | chr8.4:36320938-36320957 | None:intergenic | 40.0% | |
| CCCACATTGCCATTAGAAAA+AGG | - | chr8.4:36320685-36320704 | MS.gene038480:CDS | 40.0% | |
| CTCTCAAAAGCCTCTTCTAA+TGG | + | chr8.4:36321177-36321196 | None:intergenic | 40.0% | |
| GAAAGAGTCAACTTGCAAGA+TGG | - | chr8.4:36321065-36321084 | MS.gene038480:CDS | 40.0% | |
| GATTGGAAGTGAGTAAAGGA+TGG | + | chr8.4:36320915-36320934 | None:intergenic | 40.0% | |
| GCATGTATTGGGATATTGGA+AGG | - | chr8.4:36321236-36321255 | MS.gene038480:CDS | 40.0% | |
| TCCTACTTCCATCAATACCA+AGG | - | chr8.4:36320718-36320737 | MS.gene038480:CDS | 40.0% | |
| TGAGAAACTGAGCAATTTGG+AGG | - | chr8.4:36321422-36321441 | MS.gene038480:CDS | 40.0% | |
| TTAGTTACCACTCCAAAAGC+AGG | - | chr8.4:36320820-36320839 | MS.gene038480:CDS | 40.0% | |
| ! | AAGCTAAGAGCACAAAGTAG+AGG | - | chr8.4:36321144-36321163 | MS.gene038480:CDS | 40.0% |
| ! | AGCTAAGAGCACAAAGTAGA+GGG | - | chr8.4:36321145-36321164 | MS.gene038480:CDS | 40.0% |
| ! | GAGTTCTTTTGGACCGTTTT+GGG | - | chr8.4:36321212-36321231 | MS.gene038480:CDS | 40.0% |
| ! | GCCAAAATCCTTGGTATTGA+TGG | + | chr8.4:36320729-36320748 | None:intergenic | 40.0% |
| ! | GGTGACAATAAGTTGAGATC+AGG | + | chr8.4:36320994-36321013 | None:intergenic | 40.0% |
| !! | TCCTTGGTATTGATGGAAGT+AGG | + | chr8.4:36320722-36320741 | None:intergenic | 40.0% |
| AACACCTTGGAGAATCCTTG+TGG | + | chr8.4:36320755-36320774 | None:intergenic | 45.0% | |
| CCAAGAAGGGAACAAGAGAA+TGG | + | chr8.4:36320939-36320958 | None:intergenic | 45.0% | |
| CCATTCTCTTGTTCCCTTCT+TGG | - | chr8.4:36320936-36320955 | MS.gene038480:CDS | 45.0% | |
| CCCAATACATGCTCCCAAAA+CGG | + | chr8.4:36321228-36321247 | None:intergenic | 45.0% | |
| GGGATATTGGAAGGAAAGCT+TGG | - | chr8.4:36321245-36321264 | MS.gene038480:CDS | 45.0% | |
| TGACTTAGGGCAAGAATGCA+AGG | - | chr8.4:36320654-36320673 | MS.gene038480:CDS | 45.0% | |
| TGGGGATTGGAAGTGAGTAA+AGG | + | chr8.4:36320919-36320938 | None:intergenic | 45.0% | |
| TGTGTAGAGAAGAGTCTTGG+AGG | + | chr8.4:36321015-36321034 | None:intergenic | 45.0% | |
| TTGTGGCAAGCCAAAATCCT+TGG | + | chr8.4:36320738-36320757 | None:intergenic | 45.0% | |
| ! | CGAGTTCTTTTGGACCGTTT+TGG | - | chr8.4:36321211-36321230 | MS.gene038480:CDS | 45.0% |
| ! | GGGAGCATGTATTGGGATAT+TGG | - | chr8.4:36321232-36321251 | MS.gene038480:CDS | 45.0% |
| !! | TGTAGAGGCACGAGTTCTTT+TGG | - | chr8.4:36321201-36321220 | MS.gene038480:CDS | 45.0% |
| !!! | AAGGATTTTGGCTTGCCACA+AGG | - | chr8.4:36320737-36320756 | MS.gene038480:CDS | 45.0% |
| !!! | ACCGTTTTGGGAGCATGTAT+TGG | - | chr8.4:36321224-36321243 | MS.gene038480:CDS | 45.0% |
| !!! | CCGTTTTGGGAGCATGTATT+GGG | - | chr8.4:36321225-36321244 | MS.gene038480:CDS | 45.0% |
| AAGCTTGGAAAGGCCAGAGA+AGG | - | chr8.4:36321260-36321279 | MS.gene038480:CDS | 50.0% | |
| AGGGCCACTTCCATTAGAAG+AGG | - | chr8.4:36321164-36321183 | MS.gene038480:CDS | 50.0% | |
| CTCCAAAAGCAGGTACCACT+TGG | - | chr8.4:36320830-36320849 | MS.gene038480:CDS | 50.0% | |
| CTTGCCACAAGGATTCTCCA+AGG | - | chr8.4:36320748-36320767 | MS.gene038480:CDS | 50.0% | |
| GGGAACAAGAGAATGGGGAT+TGG | + | chr8.4:36320932-36320951 | None:intergenic | 50.0% | |
| GTACCACTTGGCTCAAAGCA+TGG | - | chr8.4:36320842-36320861 | MS.gene038480:CDS | 50.0% | |
| ! | AGCCAAGTGGTACCTGCTTT+TGG | + | chr8.4:36320835-36320854 | None:intergenic | 50.0% |
| ! | AGTCCATGCTTTGAGCCAAG+TGG | + | chr8.4:36320848-36320867 | None:intergenic | 50.0% |
| !! | AGTGGTACCTGCTTTTGGAG+TGG | + | chr8.4:36320830-36320849 | None:intergenic | 50.0% |
| AATCTCCAACTCGGCCTAGG+CGG | + | chr8.4:36321497-36321516 | None:intergenic | 55.0% | |
| TGCAATCTCCAACTCGGCCT+AGG | + | chr8.4:36321500-36321519 | None:intergenic | 55.0% | |
| ! | TTTTTCCGCCTAGGCCGAGT+TGG | - | chr8.4:36321489-36321508 | MS.gene038480:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 36320598 | 36321602 | 36320598 | ID=MS.gene038480 |
| chr8.4 | mRNA | 36320598 | 36321602 | 36320598 | ID=MS.gene038480.t1;Parent=MS.gene038480 |
| chr8.4 | exon | 36320598 | 36321602 | 36320598 | ID=MS.gene038480.t1.exon1;Parent=MS.gene038480.t1 |
| chr8.4 | CDS | 36320598 | 36321602 | 36320598 | ID=cds.MS.gene038480.t1;Parent=MS.gene038480.t1 |
| Gene Sequence |
| Protein sequence |