Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038489.t1 | XP_003628738.1 | 95.5 | 333 | 14 | 1 | 24 | 355 | 1 | 333 | 6.70E-189 | 669.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038489.t1 | P52839 | 51.2 | 324 | 150 | 5 | 34 | 355 | 7 | 324 | 7.7e-93 | 342.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038489.t1 | G7LGA0 | 95.5 | 333 | 14 | 1 | 24 | 355 | 1 | 333 | 4.9e-189 | 669.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene038489 | MS.gene53169 | PPI |
| MS.gene038489 | MS.gene55382 | PPI |
| MS.gene038489 | MS.gene99693 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038489.t1 | MTR_8g066220 | 95.495 | 333 | 14 | 1 | 24 | 355 | 1 | 333 | 0.0 | 657 |
| MS.gene038489.t1 | MTR_3g435130 | 73.353 | 334 | 87 | 2 | 24 | 355 | 1 | 334 | 0.0 | 513 |
| MS.gene038489.t1 | MTR_0071s0010 | 69.277 | 332 | 100 | 2 | 26 | 355 | 2 | 333 | 9.93e-175 | 489 |
| MS.gene038489.t1 | MTR_3g046670 | 69.277 | 332 | 100 | 2 | 26 | 355 | 2 | 333 | 9.93e-175 | 489 |
| MS.gene038489.t1 | MTR_8g066210 | 67.868 | 333 | 91 | 2 | 24 | 355 | 1 | 318 | 1.15e-165 | 465 |
| MS.gene038489.t1 | MTR_7g007710 | 51.863 | 322 | 145 | 5 | 41 | 355 | 14 | 332 | 2.75e-115 | 338 |
| MS.gene038489.t1 | MTR_3g013500 | 51.258 | 318 | 154 | 1 | 39 | 355 | 20 | 337 | 6.32e-115 | 337 |
| MS.gene038489.t1 | MTR_7g007680 | 48.308 | 325 | 156 | 6 | 38 | 355 | 14 | 333 | 2.52e-108 | 322 |
| MS.gene038489.t1 | MTR_8g040820 | 48.137 | 322 | 162 | 4 | 39 | 355 | 23 | 344 | 1.86e-106 | 316 |
| MS.gene038489.t1 | MTR_8g066280 | 77.005 | 187 | 42 | 1 | 170 | 355 | 23 | 209 | 4.77e-104 | 305 |
| MS.gene038489.t1 | MTR_8g040490 | 46.106 | 321 | 169 | 3 | 39 | 355 | 23 | 343 | 3.20e-100 | 301 |
| MS.gene038489.t1 | MTR_8g035720 | 45.758 | 330 | 173 | 5 | 32 | 355 | 77 | 406 | 5.51e-100 | 301 |
| MS.gene038489.t1 | MTR_8g040430 | 45.092 | 326 | 173 | 4 | 36 | 355 | 20 | 345 | 4.71e-99 | 297 |
| MS.gene038489.t1 | MTR_3g434790 | 73.958 | 192 | 49 | 1 | 165 | 355 | 43 | 234 | 9.57e-99 | 292 |
| MS.gene038489.t1 | MTR_3g434790 | 57.895 | 57 | 23 | 1 | 24 | 79 | 1 | 57 | 1.10e-13 | 70.1 |
| MS.gene038489.t1 | MTR_8g041790 | 44.970 | 338 | 159 | 9 | 24 | 355 | 9 | 325 | 3.29e-94 | 284 |
| MS.gene038489.t1 | MTR_8g040520 | 48.101 | 316 | 156 | 5 | 39 | 349 | 23 | 335 | 8.77e-93 | 281 |
| MS.gene038489.t1 | MTR_8g040250 | 49.012 | 253 | 120 | 6 | 108 | 355 | 45 | 293 | 1.82e-82 | 253 |
| MS.gene038489.t1 | MTR_8g014380 | 43.624 | 298 | 127 | 6 | 39 | 333 | 22 | 281 | 3.12e-79 | 244 |
| MS.gene038489.t1 | MTR_8g040820 | 51.376 | 218 | 101 | 4 | 143 | 355 | 28 | 245 | 2.94e-74 | 230 |
| MS.gene038489.t1 | MTR_8g040430 | 47.032 | 219 | 111 | 3 | 142 | 355 | 27 | 245 | 1.59e-67 | 213 |
| MS.gene038489.t1 | MTR_8g040730 | 53.012 | 166 | 69 | 6 | 101 | 260 | 39 | 201 | 3.51e-43 | 157 |
| MS.gene038489.t1 | MTR_8g040730 | 46.914 | 162 | 81 | 3 | 40 | 199 | 338 | 496 | 1.51e-37 | 141 |
| MS.gene038489.t1 | MTR_8g040710 | 48.322 | 149 | 74 | 2 | 200 | 345 | 134 | 282 | 3.98e-41 | 145 |
| MS.gene038489.t1 | MTR_8g066190 | 58.879 | 107 | 26 | 1 | 249 | 355 | 4 | 92 | 2.95e-34 | 122 |
| MS.gene038489.t1 | MTR_8g040315 | 47.328 | 131 | 67 | 2 | 226 | 355 | 3 | 132 | 2.95e-27 | 104 |
| MS.gene038489.t1 | MTR_8g066200 | 77.778 | 36 | 8 | 0 | 174 | 209 | 25 | 60 | 2.55e-14 | 67.4 |
| MS.gene038489.t1 | MTR_8g040410 | 48.333 | 60 | 29 | 1 | 89 | 146 | 21 | 80 | 1.44e-11 | 62.0 |
| MS.gene038489.t1 | MTR_8g040410 | 38.202 | 89 | 36 | 2 | 240 | 327 | 75 | 145 | 2.77e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038489.t1 | AT3G45070 | 50.313 | 320 | 156 | 3 | 38 | 355 | 10 | 328 | 2.25e-111 | 328 |
| MS.gene038489.t1 | AT3G45070 | 50.313 | 320 | 156 | 3 | 38 | 355 | 37 | 355 | 2.86e-111 | 328 |
| MS.gene038489.t1 | AT3G45070 | 50.313 | 320 | 156 | 3 | 38 | 355 | 5 | 323 | 3.01e-111 | 327 |
| MS.gene038489.t1 | AT2G03760 | 50.309 | 324 | 153 | 5 | 34 | 355 | 7 | 324 | 1.23e-108 | 321 |
| MS.gene038489.t1 | AT5G07010 | 47.692 | 325 | 166 | 3 | 34 | 355 | 33 | 356 | 1.37e-107 | 319 |
| MS.gene038489.t1 | AT3G45080 | 49.533 | 321 | 158 | 4 | 38 | 355 | 10 | 329 | 1.51e-105 | 313 |
| MS.gene038489.t1 | AT2G03770 | 47.853 | 326 | 158 | 3 | 24 | 348 | 1 | 315 | 1.09e-103 | 308 |
| MS.gene038489.t1 | AT5G07000 | 47.205 | 322 | 164 | 4 | 39 | 355 | 24 | 344 | 4.67e-100 | 300 |
| MS.gene038489.t1 | AT2G03750 | 45.245 | 347 | 185 | 4 | 12 | 355 | 6 | 350 | 1.87e-98 | 296 |
| MS.gene038489.t1 | AT1G13420 | 49.196 | 311 | 150 | 5 | 48 | 355 | 26 | 331 | 7.52e-98 | 293 |
| MS.gene038489.t1 | AT5G43690 | 45.566 | 327 | 171 | 5 | 34 | 355 | 7 | 331 | 2.16e-96 | 290 |
| MS.gene038489.t1 | AT4G26280 | 47.134 | 314 | 145 | 3 | 38 | 348 | 7 | 302 | 1.49e-95 | 287 |
| MS.gene038489.t1 | AT1G28170 | 48.615 | 325 | 160 | 6 | 34 | 355 | 6 | 326 | 1.72e-92 | 280 |
| MS.gene038489.t1 | AT1G18590 | 46.349 | 315 | 153 | 8 | 48 | 353 | 34 | 341 | 3.96e-90 | 274 |
| MS.gene038489.t1 | AT2G14920 | 44.586 | 314 | 166 | 4 | 48 | 355 | 22 | 333 | 5.09e-89 | 271 |
| MS.gene038489.t1 | AT1G74100 | 44.586 | 314 | 160 | 6 | 48 | 353 | 26 | 333 | 5.82e-89 | 271 |
| MS.gene038489.t1 | AT1G74090 | 45.079 | 315 | 157 | 7 | 48 | 353 | 38 | 345 | 5.26e-81 | 251 |
| MS.gene038489.t1 | AT1G13430 | 43.425 | 327 | 165 | 4 | 48 | 355 | 26 | 351 | 1.47e-80 | 250 |
| MS.gene038489.t1 | AT2G27570 | 40.125 | 319 | 135 | 4 | 38 | 355 | 10 | 273 | 4.48e-76 | 236 |
Find 78 sgRNAs with CRISPR-Local
Find 94 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATCTTCTTTCAAGTATTT+TGG | 0.168021 | 8.4:+36426633 | None:intergenic |
| GGATGGTTGTTATGAATATT+TGG | 0.171994 | 8.4:+36426372 | None:intergenic |
| TTCATGAATATCTAGGATTT+TGG | 0.173247 | 8.4:-36426542 | MS.gene038489:CDS |
| TTGGACTCTTTCACAGATTT+TGG | 0.188413 | 8.4:+36426213 | None:intergenic |
| AGCTCTTTCAAAACAAAATT+AGG | 0.246214 | 8.4:+36425952 | None:intergenic |
| GAGCCAAGTGGTACCTGATT+TGG | 0.249783 | 8.4:+36426434 | None:intergenic |
| ATAGTTGTTGAAGAGAAATT+TGG | 0.254759 | 8.4:-36425712 | MS.gene038489:CDS |
| TCATGTTCTCGTTCCCTTCA+TGG | 0.279826 | 8.4:-36426331 | MS.gene038489:CDS |
| CGACTTCTTATGGACCCTTT+TGG | 0.290771 | 8.4:-36426056 | MS.gene038489:CDS |
| AGCCAAGTGGTACCTGATTT+GGG | 0.328372 | 8.4:+36426435 | None:intergenic |
| TGTAGAGGAACGACTTCTTA+TGG | 0.332025 | 8.4:-36426066 | MS.gene038489:CDS |
| CTCTCAACAGCCTCTTCTAA+TGG | 0.341088 | 8.4:+36426093 | None:intergenic |
| ATATGGAAGCAGGAGATAAA+AGG | 0.361315 | 8.4:+36426718 | None:intergenic |
| CCCACCTTTCATGAATATCT+AGG | 0.366679 | 8.4:-36426549 | MS.gene038489:CDS |
| GGGATCATGTATTAGGATAC+TGG | 0.379480 | 8.4:-36426035 | MS.gene038489:CDS |
| CTTTGAGAAGCTTAGCAACT+TGG | 0.382954 | 8.4:-36425851 | MS.gene038489:CDS |
| CAAACCTTGCCATTAGTAGA+AGG | 0.385199 | 8.4:-36426582 | MS.gene038489:CDS |
| AGTGAAACAAAAGTGTCTTT+AGG | 0.390627 | 8.4:+36426162 | None:intergenic |
| TAAAGCACCTTGGAGAATCT+TGG | 0.393010 | 8.4:+36426512 | None:intergenic |
| GTCTTGGCAAAGTTGGAGAT+TGG | 0.394578 | 8.4:-36425774 | MS.gene038489:CDS |
| GATTCTTCTTCTTTAGAGAA+TGG | 0.401701 | 8.4:+36425910 | None:intergenic |
| AAATCTTCTCACAACTGAAA+TGG | 0.406540 | 8.4:-36425749 | MS.gene038489:CDS |
| TCGGTAGTTAAGGCTTAATA+TGG | 0.408104 | 8.4:+36426701 | None:intergenic |
| TTGTGTGTGCAGAAGATTCT+TGG | 0.414959 | 8.4:+36426252 | None:intergenic |
| GAATATTTGGATATTTGTTA+CGG | 0.427020 | 8.4:+36426385 | None:intergenic |
| TCGATCCACCCTTCTACTAA+TGG | 0.428566 | 8.4:+36426573 | None:intergenic |
| TCCTAATACATGATCCCAAA+AGG | 0.434502 | 8.4:+36426041 | None:intergenic |
| TTTCGTCTGAAATTGAAAAC+AGG | 0.435491 | 8.4:-36425807 | MS.gene038489:CDS |
| TGTTTGTGGGTCGGTAGTTA+AGG | 0.441589 | 8.4:+36426691 | None:intergenic |
| TTAGTTACAAATCCCAAATC+AGG | 0.445208 | 8.4:-36426447 | MS.gene038489:CDS |
| GGGGATAGTGAATTGAGTTC+AGG | 0.447296 | 8.4:+36426276 | None:intergenic |
| AAAGCACCTTGGAGAATCTT+GGG | 0.462402 | 8.4:+36426513 | None:intergenic |
| CAATATCGGTTTCATAGTAA+AGG | 0.480782 | 8.4:+36426301 | None:intergenic |
| ATTGAGTTCAGGAACAATAT+CGG | 0.491944 | 8.4:+36426287 | None:intergenic |
| GAAGAGAAATTTGGTAAACA+TGG | 0.492194 | 8.4:-36425703 | MS.gene038489:CDS |
| AAGAGAAATTTGGTAAACAT+GGG | 0.504220 | 8.4:-36425702 | MS.gene038489:CDS |
| ACTTGGAGATCAATAAGAAC+GGG | 0.505418 | 8.4:-36425834 | MS.gene038489:CDS |
| TGTGAAAGAGTCCAACTGTA+AGG | 0.508848 | 8.4:-36426205 | MS.gene038489:CDS |
| AGGATACTGGAAGGAAAGCT+TGG | 0.510183 | 8.4:-36426022 | MS.gene038489:CDS |
| TAAGATGATATCTGTATCAA+AGG | 0.516500 | 8.4:+36426467 | None:intergenic |
| GTAAAGGTTAATCTCCATGA+AGG | 0.526084 | 8.4:+36426317 | None:intergenic |
| TCCTAGATATTCATGAAAGG+TGG | 0.528145 | 8.4:+36426548 | None:intergenic |
| TATATCATCAACCACACCAT+TGG | 0.528516 | 8.4:+36425888 | None:intergenic |
| AAGATACACCACCTTACAGT+TGG | 0.530002 | 8.4:+36426194 | None:intergenic |
| TTGTCATGGTGTTTGTGGGT+CGG | 0.537503 | 8.4:+36426682 | None:intergenic |
| TTAAGGCTTAATATGGAAGC+AGG | 0.540413 | 8.4:+36426708 | None:intergenic |
| AATCTCCAACTTTGCCAAGA+CGG | 0.543241 | 8.4:+36425776 | None:intergenic |
| TTTGAAAAGATAAAGCACCT+TGG | 0.549529 | 8.4:+36426502 | None:intergenic |
| TTTGCTCCCAAGATTCTCCA+AGG | 0.560201 | 8.4:-36426519 | MS.gene038489:CDS |
| CCTAATACATGATCCCAAAA+GGG | 0.563200 | 8.4:+36426042 | None:intergenic |
| CCTAGATATTCATGAAAGGT+GGG | 0.570706 | 8.4:+36426549 | None:intergenic |
| GGGAACGAGAACATGAGGGT+TGG | 0.570819 | 8.4:+36426338 | None:intergenic |
| CCACCCTTCTACTAATGGCA+AGG | 0.577237 | 8.4:+36426578 | None:intergenic |
| ATCCCAAATCAGGTACCACT+TGG | 0.590361 | 8.4:-36426437 | MS.gene038489:CDS |
| GGTTGGAAGTGAGCAAAGGA+TGG | 0.599932 | 8.4:+36426355 | None:intergenic |
| AACTTGGAGATCAATAAGAA+CGG | 0.603753 | 8.4:-36425835 | MS.gene038489:CDS |
| AAACCTTGCCATTAGTAGAA+GGG | 0.603804 | 8.4:-36426581 | MS.gene038489:CDS |
| TGACTTAGGTCAAGAGTGCA+AGG | 0.607045 | 8.4:-36426613 | MS.gene038489:CDS |
| ATGAAGGGAACGAGAACATG+AGG | 0.607885 | 8.4:+36426333 | None:intergenic |
| AAGCTAAGAGCACAAAGTAG+AGG | 0.608022 | 8.4:-36426123 | MS.gene038489:CDS |
| TAAAGGTTAATCTCCATGAA+GGG | 0.611468 | 8.4:+36426318 | None:intergenic |
| GGAAGCAGGAGATAAAAGGT+TGG | 0.618200 | 8.4:+36426722 | None:intergenic |
| AGGAACACTTCCATTAGAAG+AGG | 0.622151 | 8.4:-36426103 | MS.gene038489:CDS |
| AAATCCTAGATATTCATGAA+AGG | 0.629835 | 8.4:+36426545 | None:intergenic |
| TCTAAAGAAGAAGAATCCAA+TGG | 0.633145 | 8.4:-36425904 | MS.gene038489:CDS |
| AGAAGAAGAATCCAATGGTG+TGG | 0.637343 | 8.4:-36425899 | MS.gene038489:CDS |
| AGTCAATGCTTTGAGCCAAG+TGG | 0.638855 | 8.4:+36426422 | None:intergenic |
| CCTTGCCATTAGTAGAAGGG+TGG | 0.639354 | 8.4:-36426578 | MS.gene038489:CDS |
| TCATGTATTAGGATACTGGA+AGG | 0.646638 | 8.4:-36426031 | MS.gene038489:CDS |
| TGTGTGCAGAAGATTCTTGG+AGG | 0.647451 | 8.4:+36426255 | None:intergenic |
| TGAGGGTTGGAAGTGAGCAA+AGG | 0.653409 | 8.4:+36426351 | None:intergenic |
| GTGTGCAGAAGATTCTTGGA+GGG | 0.654330 | 8.4:+36426256 | None:intergenic |
| ACTGGAAGGAAAGCTTGGAA+AGG | 0.675899 | 8.4:-36426017 | MS.gene038489:CDS |
| TGAAGGGAACGAGAACATGA+GGG | 0.682907 | 8.4:+36426334 | None:intergenic |
| TGTGCAGAAGATTCTTGGAG+GGG | 0.685555 | 8.4:+36426257 | None:intergenic |
| TACTTGAAAGAAGATGACTT+AGG | 0.685821 | 8.4:-36426627 | MS.gene038489:CDS |
| GGAAAGCTTGGAAAGGCCAG+AGG | 0.701281 | 8.4:-36426010 | MS.gene038489:CDS |
| GAAAGAGTCCAACTGTAAGG+TGG | 0.718352 | 8.4:-36426202 | MS.gene038489:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GAATATTTGGATATTTGTTA+CGG | + | chr8.4:36426043-36426062 | None:intergenic | 20.0% |
| ! | AAATCCTAGATATTCATGAA+AGG | + | chr8.4:36425883-36425902 | None:intergenic | 25.0% |
| ! | AAGAGAAATTTGGTAAACAT+GGG | - | chr8.4:36426723-36426742 | MS.gene038489:CDS | 25.0% |
| ! | AGCTCTTTCAAAACAAAATT+AGG | + | chr8.4:36426476-36426495 | None:intergenic | 25.0% |
| ! | ATAGTTGTTGAAGAGAAATT+TGG | - | chr8.4:36426713-36426732 | MS.gene038489:CDS | 25.0% |
| ! | TAAGATGATATCTGTATCAA+AGG | + | chr8.4:36425961-36425980 | None:intergenic | 25.0% |
| ! | TATTTCAAAAACATAACCTC+TGG | + | chr8.4:36426434-36426453 | None:intergenic | 25.0% |
| !! | TTTATCACTTGATTTTGTCA+TGG | + | chr8.4:36425760-36425779 | None:intergenic | 25.0% |
| !!! | TCATCTTCTTTCAAGTATTT+TGG | + | chr8.4:36425795-36425814 | None:intergenic | 25.0% |
| !!! | TTCATGAATATCTAGGATTT+TGG | - | chr8.4:36425883-36425902 | MS.gene038489:CDS | 25.0% |
| AAATCTTCTCACAACTGAAA+TGG | - | chr8.4:36426676-36426695 | MS.gene038489:CDS | 30.0% | |
| AACTTGGAGATCAATAAGAA+CGG | - | chr8.4:36426590-36426609 | MS.gene038489:CDS | 30.0% | |
| ATTGAGTTCAGGAACAATAT+CGG | + | chr8.4:36426141-36426160 | None:intergenic | 30.0% | |
| GAAGAGAAATTTGGTAAACA+TGG | - | chr8.4:36426722-36426741 | MS.gene038489:CDS | 30.0% | |
| GGATGGTTGTTATGAATATT+TGG | + | chr8.4:36426056-36426075 | None:intergenic | 30.0% | |
| TAAAGGTTAATCTCCATGAA+GGG | + | chr8.4:36426110-36426129 | None:intergenic | 30.0% | |
| TACTTGAAAGAAGATGACTT+AGG | - | chr8.4:36425798-36425817 | MS.gene038489:CDS | 30.0% | |
| TCTAAAGAAGAAGAATCCAA+TGG | - | chr8.4:36426521-36426540 | MS.gene038489:CDS | 30.0% | |
| TTAGTTACAAATCCCAAATC+AGG | - | chr8.4:36425978-36425997 | MS.gene038489:CDS | 30.0% | |
| ! | GATTCTTCTTCTTTAGAGAA+TGG | + | chr8.4:36426518-36426537 | None:intergenic | 30.0% |
| ! | TTTCGTCTGAAATTGAAAAC+AGG | - | chr8.4:36426618-36426637 | MS.gene038489:CDS | 30.0% |
| ! | TTTGAAAAGATAAAGCACCT+TGG | + | chr8.4:36425926-36425945 | None:intergenic | 30.0% |
| !! | AAGACACTTTTGTTTCACTT+TGG | - | chr8.4:36426267-36426286 | MS.gene038489:CDS | 30.0% |
| !! | AGTGAAACAAAAGTGTCTTT+AGG | + | chr8.4:36426266-36426285 | None:intergenic | 30.0% |
| !! | CAATATCGGTTTCATAGTAA+AGG | + | chr8.4:36426127-36426146 | None:intergenic | 30.0% |
| !! | GATTTTGGCAACAAAACATA+AGG | + | chr8.4:36426200-36426219 | None:intergenic | 30.0% |
| !!! | AAAGAGCTTGCTAAGTTTTT+GGG | - | chr8.4:36426488-36426507 | MS.gene038489:CDS | 30.0% |
| AAACCTTGCCATTAGTAGAA+GGG | - | chr8.4:36425844-36425863 | MS.gene038489:CDS | 35.0% | |
| ACTTGGAGATCAATAAGAAC+GGG | - | chr8.4:36426591-36426610 | MS.gene038489:CDS | 35.0% | |
| ATATGGAAGCAGGAGATAAA+AGG | + | chr8.4:36425710-36425729 | None:intergenic | 35.0% | |
| CCTAATACATGATCCCAAAA+GGG | + | chr8.4:36426386-36426405 | None:intergenic | 35.0% | |
| CCTAGATATTCATGAAAGGT+GGG | + | chr8.4:36425879-36425898 | None:intergenic | 35.0% | |
| GTAAAGGTTAATCTCCATGA+AGG | + | chr8.4:36426111-36426130 | None:intergenic | 35.0% | |
| TATATCATCAACCACACCAT+TGG | + | chr8.4:36426540-36426559 | None:intergenic | 35.0% | |
| TCATGTATTAGGATACTGGA+AGG | - | chr8.4:36426394-36426413 | MS.gene038489:CDS | 35.0% | |
| TCCTAATACATGATCCCAAA+AGG | + | chr8.4:36426387-36426406 | None:intergenic | 35.0% | |
| TCCTAGATATTCATGAAAGG+TGG | + | chr8.4:36425880-36425899 | None:intergenic | 35.0% | |
| TCGGTAGTTAAGGCTTAATA+TGG | + | chr8.4:36425727-36425746 | None:intergenic | 35.0% | |
| TTAAGGCTTAATATGGAAGC+AGG | + | chr8.4:36425720-36425739 | None:intergenic | 35.0% | |
| ! | GATTTTGTCATGGTGTTTGT+GGG | + | chr8.4:36425750-36425769 | None:intergenic | 35.0% |
| ! | TGATTTTGTCATGGTGTTTG+TGG | + | chr8.4:36425751-36425770 | None:intergenic | 35.0% |
| ! | TTGGACTCTTTCACAGATTT+TGG | + | chr8.4:36426215-36426234 | None:intergenic | 35.0% |
| !!! | AAGAGCTTGCTAAGTTTTTG+GGG | - | chr8.4:36426489-36426508 | MS.gene038489:CDS | 35.0% |
| !!! | GAAAGAGCTTGCTAAGTTTT+TGG | - | chr8.4:36426487-36426506 | MS.gene038489:CDS | 35.0% |
| !!! | TCAAGTATTTTGGCACAACA+GGG | + | chr8.4:36425785-36425804 | None:intergenic | 35.0% |
| !!! | TTCAAGTATTTTGGCACAAC+AGG | + | chr8.4:36425786-36425805 | None:intergenic | 35.0% |
| AAGATACACCACCTTACAGT+TGG | + | chr8.4:36426234-36426253 | None:intergenic | 40.0% | |
| AATCTCCAACTTTGCCAAGA+CGG | + | chr8.4:36426652-36426671 | None:intergenic | 40.0% | |
| AGAAGAAGAATCCAATGGTG+TGG | - | chr8.4:36426526-36426545 | MS.gene038489:CDS | 40.0% | |
| AGGAACACTTCCATTAGAAG+AGG | - | chr8.4:36426322-36426341 | MS.gene038489:CDS | 40.0% | |
| CAAACCTTGCCATTAGTAGA+AGG | - | chr8.4:36425843-36425862 | MS.gene038489:CDS | 40.0% | |
| CCCACCTTTCATGAATATCT+AGG | - | chr8.4:36425876-36425895 | MS.gene038489:CDS | 40.0% | |
| GGGATCATGTATTAGGATAC+TGG | - | chr8.4:36426390-36426409 | MS.gene038489:CDS | 40.0% | |
| TGTAGAGGAACGACTTCTTA+TGG | - | chr8.4:36426359-36426378 | MS.gene038489:CDS | 40.0% | |
| TGTGAAAGAGTCCAACTGTA+AGG | - | chr8.4:36426220-36426239 | MS.gene038489:CDS | 40.0% | |
| TTGTGTGTGCAGAAGATTCT+TGG | + | chr8.4:36426176-36426195 | None:intergenic | 40.0% | |
| ! | AAAGCACCTTGGAGAATCTT+GGG | + | chr8.4:36425915-36425934 | None:intergenic | 40.0% |
| ! | AAGCTAAGAGCACAAAGTAG+AGG | - | chr8.4:36426302-36426321 | MS.gene038489:CDS | 40.0% |
| ! | CTTTGAGAAGCTTAGCAACT+TGG | - | chr8.4:36426574-36426593 | MS.gene038489:CDS | 40.0% |
| ! | GACTTCTTATGGACCCTTTT+GGG | - | chr8.4:36426370-36426389 | MS.gene038489:CDS | 40.0% |
| ! | GCTGTTGAGAGTTTTTGTAG+AGG | - | chr8.4:36426344-36426363 | MS.gene038489:CDS | 40.0% |
| ! | TAAAGCACCTTGGAGAATCT+TGG | + | chr8.4:36425916-36425935 | None:intergenic | 40.0% |
| ! | TTTTTCCGTCTTGGCAAAGT+TGG | - | chr8.4:36426644-36426663 | MS.gene038489:CDS | 40.0% |
| !! | AACAGGAACTTTTTCCGTCT+TGG | - | chr8.4:36426635-36426654 | MS.gene038489:CDS | 40.0% |
| !!! | CCCTTTTGGGATCATGTATT+AGG | - | chr8.4:36426383-36426402 | MS.gene038489:CDS | 40.0% |
| ACTGGAAGGAAAGCTTGGAA+AGG | - | chr8.4:36426408-36426427 | MS.gene038489:CDS | 45.0% | |
| AGCCAAGTGGTACCTGATTT+GGG | + | chr8.4:36425993-36426012 | None:intergenic | 45.0% | |
| AGGATACTGGAAGGAAAGCT+TGG | - | chr8.4:36426403-36426422 | MS.gene038489:CDS | 45.0% | |
| ATCCCAAATCAGGTACCACT+TGG | - | chr8.4:36425988-36426007 | MS.gene038489:CDS | 45.0% | |
| ATGAAGGGAACGAGAACATG+AGG | + | chr8.4:36426095-36426114 | None:intergenic | 45.0% | |
| CTCTCAACAGCCTCTTCTAA+TGG | + | chr8.4:36426335-36426354 | None:intergenic | 45.0% | |
| GAAAGAGTCCAACTGTAAGG+TGG | - | chr8.4:36426223-36426242 | MS.gene038489:CDS | 45.0% | |
| GGAAGCAGGAGATAAAAGGT+TGG | + | chr8.4:36425706-36425725 | None:intergenic | 45.0% | |
| GGGGATAGTGAATTGAGTTC+AGG | + | chr8.4:36426152-36426171 | None:intergenic | 45.0% | |
| GTCTTGGCAAAGTTGGAGAT+TGG | - | chr8.4:36426651-36426670 | MS.gene038489:CDS | 45.0% | |
| GTGTGCAGAAGATTCTTGGA+GGG | + | chr8.4:36426172-36426191 | None:intergenic | 45.0% | |
| TCATGTTCTCGTTCCCTTCA+TGG | - | chr8.4:36426094-36426113 | MS.gene038489:CDS | 45.0% | |
| TCGATCCACCCTTCTACTAA+TGG | + | chr8.4:36425855-36425874 | None:intergenic | 45.0% | |
| TGAAGGGAACGAGAACATGA+GGG | + | chr8.4:36426094-36426113 | None:intergenic | 45.0% | |
| TGTGCAGAAGATTCTTGGAG+GGG | + | chr8.4:36426171-36426190 | None:intergenic | 45.0% | |
| TGTGTGCAGAAGATTCTTGG+AGG | + | chr8.4:36426173-36426192 | None:intergenic | 45.0% | |
| TGTTTGTGGGTCGGTAGTTA+AGG | + | chr8.4:36425737-36425756 | None:intergenic | 45.0% | |
| TTGTCATGGTGTTTGTGGGT+CGG | + | chr8.4:36425746-36425765 | None:intergenic | 45.0% | |
| TTTGCTCCCAAGATTCTCCA+AGG | - | chr8.4:36425906-36425925 | MS.gene038489:CDS | 45.0% | |
| ! | AGTCAATGCTTTGAGCCAAG+TGG | + | chr8.4:36426006-36426025 | None:intergenic | 45.0% |
| ! | CGACTTCTTATGGACCCTTT+TGG | - | chr8.4:36426369-36426388 | MS.gene038489:CDS | 45.0% |
| ! | TGACTTAGGTCAAGAGTGCA+AGG | - | chr8.4:36425812-36425831 | MS.gene038489:CDS | 45.0% |
| CCACCCTTCTACTAATGGCA+AGG | + | chr8.4:36425850-36425869 | None:intergenic | 50.0% | |
| CCTTGCCATTAGTAGAAGGG+TGG | - | chr8.4:36425847-36425866 | MS.gene038489:CDS | 50.0% | |
| GAGCCAAGTGGTACCTGATT+TGG | + | chr8.4:36425994-36426013 | None:intergenic | 50.0% | |
| GGTTGGAAGTGAGCAAAGGA+TGG | + | chr8.4:36426073-36426092 | None:intergenic | 50.0% | |
| TGAGGGTTGGAAGTGAGCAA+AGG | + | chr8.4:36426077-36426096 | None:intergenic | 50.0% | |
| GGAAAGCTTGGAAAGGCCAG+AGG | - | chr8.4:36426415-36426434 | MS.gene038489:CDS | 55.0% | |
| GGGAACGAGAACATGAGGGT+TGG | + | chr8.4:36426090-36426109 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 36425690 | 36426757 | 36425690 | ID=MS.gene038489 |
| chr8.4 | mRNA | 36425690 | 36426757 | 36425690 | ID=MS.gene038489.t1;Parent=MS.gene038489 |
| chr8.4 | exon | 36425690 | 36426757 | 36425690 | ID=MS.gene038489.t1.exon1;Parent=MS.gene038489.t1 |
| chr8.4 | CDS | 36425690 | 36426757 | 36425690 | ID=cds.MS.gene038489.t1;Parent=MS.gene038489.t1 |
| Gene Sequence |
| Protein sequence |
