Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene038490.t1 | KEH16899.1 | 74.9 | 323 | 81 | 0 | 7 | 329 | 11 | 333 | 2.30E-143 | 518.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene038490.t1 | P52839 | 51.2 | 328 | 154 | 2 | 2 | 329 | 3 | 324 | 5.9e-95 | 349.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene038490.t1 | G7IXE9 | 74.9 | 323 | 81 | 0 | 7 | 329 | 11 | 333 | 1.7e-143 | 518.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene53169 | MS.gene038490 | PPI |
MS.gene99693 | MS.gene038490 | PPI |
MS.gene55382 | MS.gene038490 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene038490.t1 | MTR_0071s0010 | 74.923 | 323 | 81 | 0 | 7 | 329 | 11 | 333 | 0.0 | 511 |
MS.gene038490.t1 | MTR_3g046670 | 74.923 | 323 | 81 | 0 | 7 | 329 | 11 | 333 | 0.0 | 511 |
MS.gene038490.t1 | MTR_3g435130 | 72.477 | 327 | 90 | 0 | 3 | 329 | 8 | 334 | 1.21e-179 | 500 |
MS.gene038490.t1 | MTR_8g066220 | 69.419 | 327 | 99 | 1 | 3 | 329 | 8 | 333 | 3.02e-167 | 469 |
MS.gene038490.t1 | MTR_8g066210 | 67.890 | 327 | 89 | 2 | 3 | 329 | 8 | 318 | 7.09e-161 | 452 |
MS.gene038490.t1 | MTR_3g013500 | 52.665 | 319 | 150 | 1 | 11 | 329 | 20 | 337 | 6.93e-122 | 354 |
MS.gene038490.t1 | MTR_7g007710 | 50.621 | 322 | 147 | 4 | 15 | 329 | 16 | 332 | 7.14e-114 | 333 |
MS.gene038490.t1 | MTR_7g007680 | 47.799 | 318 | 157 | 4 | 15 | 329 | 22 | 333 | 1.48e-106 | 316 |
MS.gene038490.t1 | MTR_8g040820 | 47.022 | 319 | 164 | 4 | 15 | 329 | 27 | 344 | 1.83e-105 | 312 |
MS.gene038490.t1 | MTR_8g035720 | 46.201 | 329 | 173 | 2 | 5 | 329 | 78 | 406 | 5.58e-105 | 313 |
MS.gene038490.t1 | MTR_8g040430 | 45.872 | 327 | 171 | 5 | 8 | 329 | 20 | 345 | 7.09e-101 | 301 |
MS.gene038490.t1 | MTR_8g040490 | 46.273 | 322 | 169 | 3 | 11 | 329 | 23 | 343 | 7.29e-101 | 302 |
MS.gene038490.t1 | MTR_8g066280 | 74.468 | 188 | 48 | 0 | 142 | 329 | 22 | 209 | 3.09e-98 | 289 |
MS.gene038490.t1 | MTR_8g041790 | 46.082 | 319 | 148 | 6 | 16 | 329 | 26 | 325 | 1.21e-96 | 289 |
MS.gene038490.t1 | MTR_8g040520 | 48.254 | 315 | 155 | 4 | 11 | 321 | 23 | 333 | 8.52e-94 | 283 |
MS.gene038490.t1 | MTR_3g434790 | 69.613 | 181 | 55 | 0 | 149 | 329 | 54 | 234 | 2.37e-88 | 265 |
MS.gene038490.t1 | MTR_3g434790 | 67.347 | 49 | 16 | 0 | 3 | 51 | 9 | 57 | 1.83e-14 | 72.0 |
MS.gene038490.t1 | MTR_8g040250 | 42.540 | 315 | 141 | 6 | 19 | 329 | 15 | 293 | 1.17e-80 | 247 |
MS.gene038490.t1 | MTR_8g014380 | 43.729 | 295 | 125 | 5 | 15 | 307 | 26 | 281 | 1.89e-77 | 238 |
MS.gene038490.t1 | MTR_8g040820 | 46.575 | 219 | 113 | 3 | 115 | 329 | 27 | 245 | 3.48e-69 | 216 |
MS.gene038490.t1 | MTR_8g040430 | 47.032 | 219 | 112 | 3 | 115 | 329 | 27 | 245 | 4.03e-67 | 211 |
MS.gene038490.t1 | MTR_8g040730 | 51.381 | 181 | 79 | 5 | 73 | 248 | 39 | 215 | 5.04e-46 | 164 |
MS.gene038490.t1 | MTR_8g040730 | 45.614 | 171 | 87 | 3 | 16 | 184 | 342 | 508 | 5.20e-39 | 145 |
MS.gene038490.t1 | MTR_8g040710 | 50.676 | 148 | 71 | 1 | 174 | 319 | 135 | 282 | 6.09e-44 | 152 |
MS.gene038490.t1 | MTR_8g066190 | 61.111 | 108 | 24 | 1 | 222 | 329 | 3 | 92 | 4.41e-35 | 123 |
MS.gene038490.t1 | MTR_8g040315 | 44.882 | 127 | 69 | 1 | 203 | 329 | 7 | 132 | 6.64e-27 | 103 |
MS.gene038490.t1 | MTR_8g040410 | 49.153 | 59 | 29 | 1 | 62 | 119 | 22 | 80 | 7.23e-13 | 65.5 |
MS.gene038490.t1 | MTR_8g040410 | 34.831 | 89 | 40 | 1 | 213 | 301 | 75 | 145 | 4.80e-12 | 63.2 |
MS.gene038490.t1 | MTR_8g066200 | 52.632 | 57 | 27 | 0 | 126 | 182 | 4 | 60 | 5.33e-12 | 60.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene038490.t1 | AT3G45070 | 53.312 | 317 | 145 | 3 | 14 | 329 | 41 | 355 | 1.40e-113 | 333 |
MS.gene038490.t1 | AT3G45070 | 53.312 | 317 | 145 | 3 | 14 | 329 | 14 | 328 | 1.48e-113 | 332 |
MS.gene038490.t1 | AT3G45070 | 53.312 | 317 | 145 | 3 | 14 | 329 | 9 | 323 | 1.83e-113 | 332 |
MS.gene038490.t1 | AT2G03760 | 50.915 | 328 | 155 | 2 | 2 | 329 | 3 | 324 | 2.66e-112 | 329 |
MS.gene038490.t1 | AT5G07010 | 48.615 | 325 | 165 | 2 | 6 | 329 | 33 | 356 | 8.00e-112 | 329 |
MS.gene038490.t1 | AT5G07000 | 46.584 | 322 | 168 | 3 | 11 | 329 | 24 | 344 | 2.07e-105 | 312 |
MS.gene038490.t1 | AT3G45080 | 51.258 | 318 | 151 | 4 | 14 | 329 | 14 | 329 | 5.98e-104 | 308 |
MS.gene038490.t1 | AT2G03770 | 48.137 | 322 | 154 | 3 | 2 | 321 | 4 | 314 | 3.13e-103 | 306 |
MS.gene038490.t1 | AT1G13420 | 51.935 | 310 | 141 | 4 | 20 | 327 | 26 | 329 | 1.52e-102 | 304 |
MS.gene038490.t1 | AT1G28170 | 51.662 | 331 | 153 | 6 | 1 | 329 | 1 | 326 | 2.17e-102 | 304 |
MS.gene038490.t1 | AT2G03750 | 46.914 | 324 | 169 | 3 | 6 | 329 | 30 | 350 | 2.85e-95 | 286 |
MS.gene038490.t1 | AT4G26280 | 49.682 | 314 | 137 | 3 | 10 | 321 | 7 | 301 | 9.75e-95 | 284 |
MS.gene038490.t1 | AT5G43690 | 46.483 | 327 | 170 | 4 | 6 | 329 | 7 | 331 | 2.60e-94 | 283 |
MS.gene038490.t1 | AT2G14920 | 45.714 | 315 | 163 | 4 | 20 | 329 | 22 | 333 | 3.45e-89 | 270 |
MS.gene038490.t1 | AT1G13430 | 46.505 | 329 | 154 | 5 | 20 | 329 | 26 | 351 | 7.92e-86 | 262 |
MS.gene038490.t1 | AT1G18590 | 43.987 | 316 | 161 | 6 | 20 | 327 | 34 | 341 | 3.57e-85 | 261 |
MS.gene038490.t1 | AT1G74100 | 43.492 | 315 | 164 | 5 | 20 | 327 | 26 | 333 | 8.80e-85 | 259 |
MS.gene038490.t1 | AT2G27570 | 43.438 | 320 | 125 | 4 | 10 | 329 | 10 | 273 | 1.96e-81 | 248 |
MS.gene038490.t1 | AT1G74090 | 44.304 | 316 | 160 | 6 | 20 | 327 | 38 | 345 | 2.45e-78 | 243 |
Find 72 sgRNAs with CRISPR-Local
Find 84 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCATGCTCTTGTTCCCTTCT+TGG | 0.122818 | 8.4:-36443629 | MS.gene038490:CDS |
TCATATTCTTCCAAGTATTT+TGG | 0.152482 | 8.4:+36443934 | None:intergenic |
TCCACCAATACCAAGGATTT+TGG | 0.218522 | 8.4:-36443843 | MS.gene038490:CDS |
GAGCCAAGTGGTACCTGATT+TGG | 0.249783 | 8.4:+36443735 | None:intergenic |
GTTGAGTCTTTGATAGATTT+CGG | 0.273652 | 8.4:+36443511 | None:intergenic |
AGGATATTGGAAGGAAAGTT+TGG | 0.285930 | 8.4:-36443320 | MS.gene038490:CDS |
CTCTCGAATGCCTCTTCTAA+TGG | 0.302803 | 8.4:+36443391 | None:intergenic |
AGCCAAGTGGTACCTGATTT+GGG | 0.328372 | 8.4:+36443736 | None:intergenic |
AGTGAAACAAAAGTGTCTTT+TGG | 0.331004 | 8.4:+36443460 | None:intergenic |
GGGAGCATGTATTAGGATAT+TGG | 0.331818 | 8.4:-36443333 | MS.gene038490:CDS |
CACTCTTGTGCCAAAATACT+TGG | 0.349067 | 8.4:-36443944 | MS.gene038490:CDS |
TGAGTCCAATGGGACCCTTT+TGG | 0.353951 | 8.4:-36443354 | MS.gene038490:CDS |
GTAATCATCCCTTTCTCTAA+TGG | 0.365334 | 8.4:+36443874 | None:intergenic |
TATATCACCAACCACACCTT+TGG | 0.375797 | 8.4:+36443183 | None:intergenic |
GACAAGATAAAACTCCTTGA+AGG | 0.386865 | 8.4:+36443806 | None:intergenic |
CAAGTTAAGACCACATAGTT+GGG | 0.387955 | 8.4:-36443422 | MS.gene038490:CDS |
ACACTATCACCGAAGAGAAA+TGG | 0.398695 | 8.4:-36443009 | MS.gene038490:CDS |
AAGACTGGGAAATTGCCTTC+TGG | 0.423203 | 8.4:-36443115 | MS.gene038490:CDS |
CACTATCACCGAAGAGAAAT+GGG | 0.423999 | 8.4:-36443008 | MS.gene038490:CDS |
CAAACTTTGCCATTAGAGAA+AGG | 0.427827 | 8.4:-36443883 | MS.gene038490:CDS |
TCCTAATACATGCTCCCAAA+AGG | 0.430142 | 8.4:+36443339 | None:intergenic |
GCCAAAATCCTTGGTATTGG+TGG | 0.430614 | 8.4:+36443842 | None:intergenic |
TTGTGGTTTGCCAAAATCCT+TGG | 0.437586 | 8.4:+36443833 | None:intergenic |
TATCAAAGACTCAACTTGTA+AGG | 0.438404 | 8.4:-36443503 | MS.gene038490:CDS |
CTACGATTATATCTGTATCA+TGG | 0.444290 | 8.4:+36443767 | None:intergenic |
TTTGCCAAAATCCTTGGTAT+TGG | 0.458620 | 8.4:+36443839 | None:intergenic |
ATGTTTAGCCCATTTCTCTT+CGG | 0.462362 | 8.4:+36443000 | None:intergenic |
GTAGCTACCACTCCCAAATC+AGG | 0.473936 | 8.4:-36443748 | MS.gene038490:CDS |
TGCTCCCAAAAGGGTCCCAT+TGG | 0.483845 | 8.4:+36443349 | None:intergenic |
TGTAGAGGAGTGAGTCCAAT+GGG | 0.487163 | 8.4:-36443364 | MS.gene038490:CDS |
AAACTTTGCCATTAGAGAAA+GGG | 0.495208 | 8.4:-36443882 | MS.gene038490:CDS |
TGTGTAGAGAAGAGCCTTGG+AGG | 0.501089 | 8.4:+36443553 | None:intergenic |
AACTTGGAGACTAATAAGAC+TGG | 0.514423 | 8.4:-36443130 | MS.gene038490:CDS |
GGGGATAATGAATCTAGATC+AGG | 0.515231 | 8.4:+36443574 | None:intergenic |
AGATGTGTAGAGAAGAGCCT+TGG | 0.519657 | 8.4:+36443550 | None:intergenic |
TACGATTATATCTGTATCAT+GGG | 0.520155 | 8.4:+36443768 | None:intergenic |
TGATTGTTATCATGAATGTA+TGG | 0.524189 | 8.4:+36443673 | None:intergenic |
CCTAATACATGCTCCCAAAA+GGG | 0.526000 | 8.4:+36443340 | None:intergenic |
CCTTGGTATTGGTGGACGTA+GGG | 0.537289 | 8.4:+36443850 | None:intergenic |
ACAAGTTAAGACCACATAGT+TGG | 0.537480 | 8.4:-36443423 | MS.gene038490:CDS |
GAAGAGAAATGGGCTAAACA+TGG | 0.550159 | 8.4:-36442998 | MS.gene038490:CDS |
CTCCCAAATCAGGTACCACT+TGG | 0.552250 | 8.4:-36443738 | MS.gene038490:CDS |
TTCTTTCGTCGAGGCCAAGT+TGG | 0.555525 | 8.4:-36443076 | MS.gene038490:CDS |
GTGTAGAGAAGAGCCTTGGA+GGG | 0.561070 | 8.4:+36443554 | None:intergenic |
ATATTTCTTGCGGTTGAGCA+AGG | 0.563864 | 8.4:+36443696 | None:intergenic |
GTAAAGGGTAAGTTCCAAGA+AGG | 0.564258 | 8.4:+36443615 | None:intergenic |
AACTCCTTGAAGGTCTCTTG+TGG | 0.565963 | 8.4:+36443816 | None:intergenic |
GAAGAATCCAAAGGTGTGGT+TGG | 0.575305 | 8.4:-36443190 | MS.gene038490:CDS |
CAAACCACAAGAGACCTTCA+AGG | 0.587292 | 8.4:-36443820 | MS.gene038490:CDS |
TCTCAGATGAAATGATTGAA+CGG | 0.595222 | 8.4:-36443036 | MS.gene038490:CDS |
GGGAACACTTCCATTAGAAG+AGG | 0.598671 | 8.4:-36443401 | MS.gene038490:CDS |
TAAAGGGTAAGTTCCAAGAA+GGG | 0.605054 | 8.4:+36443616 | None:intergenic |
AAGAAGGGAACAAGAGCATG+AGG | 0.605363 | 8.4:+36443631 | None:intergenic |
TTGTAGAGGAGTGAGTCCAA+TGG | 0.609516 | 8.4:-36443365 | MS.gene038490:CDS |
TAGATTCATTATCCCCTCCA+AGG | 0.609856 | 8.4:-36443567 | MS.gene038490:CDS |
TGTTAATGCTTTGAGCCAAG+TGG | 0.610189 | 8.4:+36443723 | None:intergenic |
TGAGGGTTGTTAGTAAGCAA+AGG | 0.612891 | 8.4:+36443649 | None:intergenic |
AGTGGTACCTGATTTGGGAG+TGG | 0.613042 | 8.4:+36443741 | None:intergenic |
GAATGTATGGATATTTCTTG+CGG | 0.616190 | 8.4:+36443686 | None:intergenic |
GGAAGTGTTCCCCAACTATG+TGG | 0.617769 | 8.4:+36443412 | None:intergenic |
AAGAGAAATGGGCTAAACAT+GGG | 0.623036 | 8.4:-36442997 | MS.gene038490:CDS |
TGTAGAGAAGAGCCTTGGAG+GGG | 0.624064 | 8.4:+36443555 | None:intergenic |
GCATGTATTAGGATATTGGA+AGG | 0.624163 | 8.4:-36443329 | MS.gene038490:CDS |
CAAAGACTCAACTTGTAAGG+TGG | 0.630632 | 8.4:-36443500 | MS.gene038490:CDS |
ACTTGGAGACTAATAAGACT+GGG | 0.632456 | 8.4:-36443129 | MS.gene038490:CDS |
AGAAGAAGAATCCAAAGGTG+TGG | 0.632605 | 8.4:-36443194 | MS.gene038490:CDS |
ACAAAAGAAGAAGAATCCAA+AGG | 0.648101 | 8.4:-36443199 | MS.gene038490:CDS |
TGGCACAAGAGTGTTTGCCA+TGG | 0.653319 | 8.4:+36443954 | None:intergenic |
AAGTTAAGACCACATAGTTG+GGG | 0.664111 | 8.4:-36443421 | MS.gene038490:CDS |
CCCTACGTCCACCAATACCA+AGG | 0.664496 | 8.4:-36443850 | MS.gene038490:CDS |
AGAAGGGAACAAGAGCATGA+GGG | 0.677902 | 8.4:+36443632 | None:intergenic |
TCCTTGGTATTGGTGGACGT+AGG | 0.678023 | 8.4:+36443849 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AATATCTTTTTTAAAGTAAA+GGG | + | chr8.4:36443340-36443359 | None:intergenic | 10.0% |
!!! | ATCTTTTTCAAATAAAAACT+AGG | + | chr8.4:36443693-36443712 | None:intergenic | 15.0% |
!!! | GAATATCTTTTTTAAAGTAA+AGG | + | chr8.4:36443341-36443360 | None:intergenic | 15.0% |
!!! | TCTTTTTCAAATAAAAACTA+GGG | + | chr8.4:36443692-36443711 | None:intergenic | 15.0% |
!!! | GAAAAAGATTGCTAAATTTT+TGG | - | chr8.4:36443704-36443723 | MS.gene038490:CDS | 20.0% |
! | TACGATTATATCTGTATCAT+GGG | + | chr8.4:36443172-36443191 | None:intergenic | 25.0% |
! | TGATTGTTATCATGAATGTA+TGG | + | chr8.4:36443267-36443286 | None:intergenic | 25.0% |
!! | AATAATATTTTCTTTCGTCG+AGG | - | chr8.4:36443852-36443871 | MS.gene038490:CDS | 25.0% |
!! | GATTCTTCTTCTTTTGTAAA+TGG | + | chr8.4:36443735-36443754 | None:intergenic | 25.0% |
!! | TCATATTCTTCCAAGTATTT+TGG | + | chr8.4:36443006-36443025 | None:intergenic | 25.0% |
!!! | ATATTATTTTGTTCACCAGA+AGG | + | chr8.4:36443840-36443859 | None:intergenic | 25.0% |
AAACTTTGCCATTAGAGAAA+GGG | - | chr8.4:36443055-36443074 | MS.gene038490:CDS | 30.0% | |
ACAAAAGAAGAAGAATCCAA+AGG | - | chr8.4:36443738-36443757 | MS.gene038490:CDS | 30.0% | |
CTACGATTATATCTGTATCA+TGG | + | chr8.4:36443173-36443192 | None:intergenic | 30.0% | |
GAATGTATGGATATTTCTTG+CGG | + | chr8.4:36443254-36443273 | None:intergenic | 30.0% | |
GTTGAGTCTTTGATAGATTT+CGG | + | chr8.4:36443429-36443448 | None:intergenic | 30.0% | |
TATCAAAGACTCAACTTGTA+AGG | - | chr8.4:36443434-36443453 | MS.gene038490:CDS | 30.0% | |
TCTCAGATGAAATGATTGAA+CGG | - | chr8.4:36443901-36443920 | MS.gene038490:CDS | 30.0% | |
!! | AATTTTTGCTATCTCCAACT+TGG | + | chr8.4:36443878-36443897 | None:intergenic | 30.0% |
!!! | AGTGAAACAAAAGTGTCTTT+TGG | + | chr8.4:36443480-36443499 | None:intergenic | 30.0% |
AACTTGGAGACTAATAAGAC+TGG | - | chr8.4:36443807-36443826 | MS.gene038490:CDS | 35.0% | |
AAGTTAAGACCACATAGTTG+GGG | - | chr8.4:36443516-36443535 | MS.gene038490:CDS | 35.0% | |
ACAAGTTAAGACCACATAGT+TGG | - | chr8.4:36443514-36443533 | MS.gene038490:CDS | 35.0% | |
ACTTGGAGACTAATAAGACT+GGG | - | chr8.4:36443808-36443827 | MS.gene038490:CDS | 35.0% | |
AGGATATTGGAAGGAAAGTT+TGG | - | chr8.4:36443617-36443636 | MS.gene038490:CDS | 35.0% | |
ATGTTTAGCCCATTTCTCTT+CGG | + | chr8.4:36443940-36443959 | None:intergenic | 35.0% | |
CAAACTTTGCCATTAGAGAA+AGG | - | chr8.4:36443054-36443073 | MS.gene038490:CDS | 35.0% | |
CAAGTTAAGACCACATAGTT+GGG | - | chr8.4:36443515-36443534 | MS.gene038490:CDS | 35.0% | |
GACAAGATAAAACTCCTTGA+AGG | + | chr8.4:36443134-36443153 | None:intergenic | 35.0% | |
GCATGTATTAGGATATTGGA+AGG | - | chr8.4:36443608-36443627 | MS.gene038490:CDS | 35.0% | |
GTAATCATCCCTTTCTCTAA+TGG | + | chr8.4:36443066-36443085 | None:intergenic | 35.0% | |
TAAAGGGTAAGTTCCAAGAA+GGG | + | chr8.4:36443324-36443343 | None:intergenic | 35.0% | |
TTTGCCAAAATCCTTGGTAT+TGG | + | chr8.4:36443101-36443120 | None:intergenic | 35.0% | |
!! | AAGAGAAATGGGCTAAACAT+GGG | - | chr8.4:36443940-36443959 | MS.gene038490:CDS | 35.0% |
!! | TTTTGAGAATCTGAGCAACT+TGG | - | chr8.4:36443791-36443810 | MS.gene038490:CDS | 35.0% |
ACACTATCACCGAAGAGAAA+TGG | - | chr8.4:36443928-36443947 | MS.gene038490:CDS | 40.0% | |
AGAAGAAGAATCCAAAGGTG+TGG | - | chr8.4:36443743-36443762 | MS.gene038490:CDS | 40.0% | |
ATATTTCTTGCGGTTGAGCA+AGG | + | chr8.4:36443244-36443263 | None:intergenic | 40.0% | |
CAAAGACTCAACTTGTAAGG+TGG | - | chr8.4:36443437-36443456 | MS.gene038490:CDS | 40.0% | |
CACTATCACCGAAGAGAAAT+GGG | - | chr8.4:36443929-36443948 | MS.gene038490:CDS | 40.0% | |
CACTCTTGTGCCAAAATACT+TGG | - | chr8.4:36442993-36443012 | MS.gene038490:CDS | 40.0% | |
CCTAATACATGCTCCCAAAA+GGG | + | chr8.4:36443600-36443619 | None:intergenic | 40.0% | |
GGGGATAATGAATCTAGATC+AGG | + | chr8.4:36443366-36443385 | None:intergenic | 40.0% | |
GTAAAGGGTAAGTTCCAAGA+AGG | + | chr8.4:36443325-36443344 | None:intergenic | 40.0% | |
TAGATTCATTATCCCCTCCA+AGG | - | chr8.4:36443370-36443389 | MS.gene038490:CDS | 40.0% | |
TATATCACCAACCACACCTT+TGG | + | chr8.4:36443757-36443776 | None:intergenic | 40.0% | |
TCCTAATACATGCTCCCAAA+AGG | + | chr8.4:36443601-36443620 | None:intergenic | 40.0% | |
TGAGGGTTGTTAGTAAGCAA+AGG | + | chr8.4:36443291-36443310 | None:intergenic | 40.0% | |
! | GCATTCGAGAGTTTTTGTAG+AGG | - | chr8.4:36443558-36443577 | MS.gene038490:CDS | 40.0% |
! | GGGAGCATGTATTAGGATAT+TGG | - | chr8.4:36443604-36443623 | MS.gene038490:CDS | 40.0% |
! | TCCACCAATACCAAGGATTT+TGG | - | chr8.4:36443094-36443113 | MS.gene038490:CDS | 40.0% |
! | TGTTAATGCTTTGAGCCAAG+TGG | + | chr8.4:36443217-36443236 | None:intergenic | 40.0% |
! | TTGTGGTTTGCCAAAATCCT+TGG | + | chr8.4:36443107-36443126 | None:intergenic | 40.0% |
!! | GAAGAGAAATGGGCTAAACA+TGG | - | chr8.4:36443939-36443958 | MS.gene038490:CDS | 40.0% |
AACTCCTTGAAGGTCTCTTG+TGG | + | chr8.4:36443124-36443143 | None:intergenic | 45.0% | |
AAGACTGGGAAATTGCCTTC+TGG | - | chr8.4:36443822-36443841 | MS.gene038490:CDS | 45.0% | |
AGATGTGTAGAGAAGAGCCT+TGG | + | chr8.4:36443390-36443409 | None:intergenic | 45.0% | |
AGCCAAGTGGTACCTGATTT+GGG | + | chr8.4:36443204-36443223 | None:intergenic | 45.0% | |
CAAACCACAAGAGACCTTCA+AGG | - | chr8.4:36443117-36443136 | MS.gene038490:CDS | 45.0% | |
CTCTCGAATGCCTCTTCTAA+TGG | + | chr8.4:36443549-36443568 | None:intergenic | 45.0% | |
GGGAACACTTCCATTAGAAG+AGG | - | chr8.4:36443536-36443555 | MS.gene038490:CDS | 45.0% | |
TCATGCTCTTGTTCCCTTCT+TGG | - | chr8.4:36443308-36443327 | MS.gene038490:CDS | 45.0% | |
TGTAGAGGAGTGAGTCCAAT+GGG | - | chr8.4:36443573-36443592 | MS.gene038490:CDS | 45.0% | |
TTGTAGAGGAGTGAGTCCAA+TGG | - | chr8.4:36443572-36443591 | MS.gene038490:CDS | 45.0% | |
! | AAGAAGGGAACAAGAGCATG+AGG | + | chr8.4:36443309-36443328 | None:intergenic | 45.0% |
! | AGAAGGGAACAAGAGCATGA+GGG | + | chr8.4:36443308-36443327 | None:intergenic | 45.0% |
! | GAAGAATCCAAAGGTGTGGT+TGG | - | chr8.4:36443747-36443766 | MS.gene038490:CDS | 45.0% |
! | GCCAAAATCCTTGGTATTGG+TGG | + | chr8.4:36443098-36443117 | None:intergenic | 45.0% |
!! | CCCTTTTGGGAGCATGTATT+AGG | - | chr8.4:36443597-36443616 | MS.gene038490:CDS | 45.0% |
CTCCCAAATCAGGTACCACT+TGG | - | chr8.4:36443199-36443218 | MS.gene038490:CDS | 50.0% | |
GAGCCAAGTGGTACCTGATT+TGG | + | chr8.4:36443205-36443224 | None:intergenic | 50.0% | |
GTAGCTACCACTCCCAAATC+AGG | - | chr8.4:36443189-36443208 | MS.gene038490:CDS | 50.0% | |
GTGTAGAGAAGAGCCTTGGA+GGG | + | chr8.4:36443386-36443405 | None:intergenic | 50.0% | |
TGTAGAGAAGAGCCTTGGAG+GGG | + | chr8.4:36443385-36443404 | None:intergenic | 50.0% | |
TGTGTAGAGAAGAGCCTTGG+AGG | + | chr8.4:36443387-36443406 | None:intergenic | 50.0% | |
TTCTTTCGTCGAGGCCAAGT+TGG | - | chr8.4:36443861-36443880 | MS.gene038490:CDS | 50.0% | |
! | GAGTCCAATGGGACCCTTTT+GGG | - | chr8.4:36443584-36443603 | MS.gene038490:CDS | 50.0% |
! | TGAGTCCAATGGGACCCTTT+TGG | - | chr8.4:36443583-36443602 | MS.gene038490:CDS | 50.0% |
!! | AGTGGTACCTGATTTGGGAG+TGG | + | chr8.4:36443199-36443218 | None:intergenic | 50.0% |
!! | CCTTGGTATTGGTGGACGTA+GGG | + | chr8.4:36443090-36443109 | None:intergenic | 50.0% |
!! | GGAAGTGTTCCCCAACTATG+TGG | + | chr8.4:36443528-36443547 | None:intergenic | 50.0% |
!! | TCCTTGGTATTGGTGGACGT+AGG | + | chr8.4:36443091-36443110 | None:intergenic | 50.0% |
CCCTACGTCCACCAATACCA+AGG | - | chr8.4:36443087-36443106 | MS.gene038490:CDS | 55.0% | |
TGCTCCCAAAAGGGTCCCAT+TGG | + | chr8.4:36443591-36443610 | None:intergenic | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.4 | gene | 36442985 | 36443974 | 36442985 | ID=MS.gene038490 |
chr8.4 | mRNA | 36442985 | 36443974 | 36442985 | ID=MS.gene038490.t1;Parent=MS.gene038490 |
chr8.4 | exon | 36442985 | 36443974 | 36442985 | ID=MS.gene038490.t1.exon1;Parent=MS.gene038490.t1 |
chr8.4 | CDS | 36442985 | 36443974 | 36442985 | ID=cds.MS.gene038490.t1;Parent=MS.gene038490.t1 |
Gene Sequence |
Protein sequence |