Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene038491.t1 | RHN41447.1 | 88.1 | 268 | 32 | 0 | 23 | 290 | 45 | 312 | 2.10E-135 | 491.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene038491.t1 | Q9M1V2 | 51.4 | 290 | 118 | 3 | 23 | 290 | 35 | 323 | 8.9e-79 | 295.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene038491.t1 | A0A396GRY2 | 88.1 | 268 | 32 | 0 | 23 | 290 | 45 | 312 | 1.5e-135 | 491.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene038491 | MS.gene53169 | PPI |
MS.gene55382 | MS.gene038491 | PPI |
MS.gene038491 | MS.gene99693 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene038491.t1 | MTR_8g066210 | 83.577 | 274 | 39 | 1 | 23 | 290 | 45 | 318 | 9.18e-168 | 468 |
MS.gene038491.t1 | MTR_3g435130 | 71.034 | 290 | 62 | 2 | 23 | 290 | 45 | 334 | 3.33e-149 | 421 |
MS.gene038491.t1 | MTR_8g066220 | 70.242 | 289 | 65 | 1 | 23 | 290 | 45 | 333 | 6.54e-149 | 421 |
MS.gene038491.t1 | MTR_0071s0010 | 66.207 | 290 | 76 | 2 | 23 | 290 | 44 | 333 | 9.15e-138 | 392 |
MS.gene038491.t1 | MTR_3g046670 | 66.207 | 290 | 76 | 2 | 23 | 290 | 44 | 333 | 9.15e-138 | 392 |
MS.gene038491.t1 | MTR_7g007710 | 45.955 | 309 | 140 | 5 | 8 | 290 | 25 | 332 | 1.00e-94 | 283 |
MS.gene038491.t1 | MTR_3g013500 | 46.284 | 296 | 136 | 2 | 18 | 290 | 42 | 337 | 1.62e-93 | 280 |
MS.gene038491.t1 | MTR_8g040820 | 43.003 | 293 | 142 | 3 | 23 | 290 | 52 | 344 | 1.69e-90 | 273 |
MS.gene038491.t1 | MTR_8g066280 | 71.277 | 188 | 33 | 1 | 124 | 290 | 22 | 209 | 4.66e-89 | 264 |
MS.gene038491.t1 | MTR_7g007680 | 44.079 | 304 | 148 | 5 | 8 | 290 | 31 | 333 | 1.54e-88 | 269 |
MS.gene038491.t1 | MTR_8g040430 | 42.321 | 293 | 144 | 2 | 23 | 290 | 53 | 345 | 7.62e-85 | 258 |
MS.gene038491.t1 | MTR_8g035720 | 42.177 | 294 | 144 | 3 | 23 | 290 | 113 | 406 | 1.11e-84 | 260 |
MS.gene038491.t1 | MTR_8g040490 | 40.753 | 292 | 149 | 2 | 23 | 290 | 52 | 343 | 2.04e-83 | 256 |
MS.gene038491.t1 | MTR_8g040520 | 44.948 | 287 | 130 | 4 | 23 | 284 | 52 | 335 | 1.19e-81 | 250 |
MS.gene038491.t1 | MTR_3g434790 | 63.587 | 184 | 46 | 1 | 128 | 290 | 51 | 234 | 9.86e-77 | 233 |
MS.gene038491.t1 | MTR_8g041790 | 42.751 | 269 | 128 | 4 | 47 | 290 | 58 | 325 | 9.53e-75 | 232 |
MS.gene038491.t1 | MTR_8g040250 | 45.059 | 253 | 110 | 5 | 63 | 290 | 45 | 293 | 1.07e-69 | 218 |
MS.gene038491.t1 | MTR_8g040820 | 41.096 | 219 | 104 | 3 | 97 | 290 | 27 | 245 | 5.13e-59 | 189 |
MS.gene038491.t1 | MTR_8g014380 | 37.546 | 269 | 108 | 4 | 22 | 268 | 51 | 281 | 9.20e-59 | 189 |
MS.gene038491.t1 | MTR_8g040430 | 40.639 | 219 | 105 | 2 | 97 | 290 | 27 | 245 | 1.45e-54 | 177 |
MS.gene038491.t1 | MTR_8g040710 | 50.000 | 142 | 69 | 1 | 139 | 278 | 139 | 280 | 4.26e-44 | 151 |
MS.gene038491.t1 | MTR_8g066190 | 66.055 | 109 | 19 | 1 | 182 | 290 | 2 | 92 | 3.61e-41 | 138 |
MS.gene038491.t1 | MTR_8g040730 | 43.243 | 185 | 68 | 6 | 56 | 206 | 39 | 220 | 1.30e-32 | 126 |
MS.gene038491.t1 | MTR_8g040730 | 45.985 | 137 | 69 | 3 | 23 | 157 | 366 | 499 | 3.74e-32 | 124 |
MS.gene038491.t1 | MTR_8g040315 | 44.444 | 126 | 69 | 1 | 165 | 290 | 8 | 132 | 9.31e-29 | 107 |
MS.gene038491.t1 | MTR_8g040410 | 33.708 | 89 | 41 | 1 | 174 | 262 | 75 | 145 | 3.50e-12 | 63.2 |
MS.gene038491.t1 | MTR_8g040410 | 45.000 | 60 | 31 | 1 | 44 | 101 | 21 | 80 | 1.05e-11 | 62.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene038491.t1 | AT3G45070 | 51.379 | 290 | 118 | 3 | 23 | 290 | 40 | 328 | 4.22e-98 | 291 |
MS.gene038491.t1 | AT3G45070 | 51.379 | 290 | 118 | 3 | 23 | 290 | 35 | 323 | 4.22e-98 | 291 |
MS.gene038491.t1 | AT3G45070 | 51.379 | 290 | 118 | 3 | 23 | 290 | 67 | 355 | 6.19e-98 | 292 |
MS.gene038491.t1 | AT3G45080 | 49.492 | 295 | 125 | 4 | 19 | 290 | 36 | 329 | 3.25e-91 | 274 |
MS.gene038491.t1 | AT5G07010 | 44.521 | 292 | 138 | 3 | 22 | 290 | 66 | 356 | 2.33e-88 | 268 |
MS.gene038491.t1 | AT2G03770 | 46.021 | 289 | 127 | 2 | 23 | 290 | 42 | 322 | 1.48e-87 | 264 |
MS.gene038491.t1 | AT1G13420 | 48.789 | 289 | 124 | 4 | 23 | 290 | 46 | 331 | 4.30e-86 | 261 |
MS.gene038491.t1 | AT5G07000 | 44.482 | 299 | 140 | 4 | 17 | 290 | 47 | 344 | 1.38e-84 | 258 |
MS.gene038491.t1 | AT5G43690 | 46.416 | 293 | 131 | 4 | 23 | 290 | 40 | 331 | 3.31e-84 | 256 |
MS.gene038491.t1 | AT2G03760 | 45.862 | 290 | 129 | 4 | 23 | 290 | 41 | 324 | 2.35e-81 | 249 |
MS.gene038491.t1 | AT2G14920 | 44.898 | 294 | 134 | 4 | 23 | 290 | 42 | 333 | 7.08e-80 | 245 |
MS.gene038491.t1 | AT1G28170 | 48.276 | 290 | 127 | 4 | 23 | 290 | 38 | 326 | 1.22e-79 | 244 |
MS.gene038491.t1 | AT2G03750 | 45.329 | 289 | 135 | 3 | 23 | 290 | 64 | 350 | 6.34e-78 | 241 |
MS.gene038491.t1 | AT4G26280 | 45.238 | 294 | 120 | 3 | 16 | 286 | 30 | 305 | 9.13e-76 | 234 |
MS.gene038491.t1 | AT2G27570 | 43.750 | 272 | 119 | 2 | 19 | 290 | 36 | 273 | 1.08e-74 | 230 |
MS.gene038491.t1 | AT1G18590 | 39.932 | 293 | 143 | 6 | 23 | 288 | 55 | 341 | 8.18e-71 | 222 |
MS.gene038491.t1 | AT1G74100 | 38.567 | 293 | 147 | 5 | 23 | 288 | 47 | 333 | 1.43e-70 | 221 |
MS.gene038491.t1 | AT1G13430 | 41.558 | 308 | 138 | 4 | 23 | 290 | 46 | 351 | 2.29e-70 | 221 |
MS.gene038491.t1 | AT1G74090 | 41.980 | 293 | 137 | 7 | 23 | 288 | 59 | 345 | 2.85e-65 | 208 |
Find 58 sgRNAs with CRISPR-Local
Find 81 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CATCAATATATCAAGGATTT+TGG | 0.142172 | 8.4:+36447939 | MS.gene038491:CDS |
GTTGACTCTTTCACAGATTT+TGG | 0.152840 | 8.4:-36448268 | None:intergenic |
TCATGCTCTTATTCCCTTCT+TGG | 0.189716 | 8.4:+36448150 | MS.gene038491:CDS |
GGATGGTTATGATCAATATT+TGG | 0.245340 | 8.4:-36448109 | None:intergenic |
CTTGATATATTGATGGGTTT+TGG | 0.254367 | 8.4:-36447931 | None:intergenic |
TGTAGAGGAGTGAGTTCTTA+TGG | 0.275090 | 8.4:+36448411 | MS.gene038491:CDS |
GAGCCATGTGGTACCTGATT+TGG | 0.289760 | 8.4:-36448047 | None:intergenic |
GCCCTTGGATTCTTCTTCAT+TGG | 0.290617 | 8.4:-36448577 | None:intergenic |
TGAGTTCTTATGGACCCTTT+TGG | 0.306745 | 8.4:+36448421 | MS.gene038491:CDS |
AGCCATGTGGTACCTGATTT+GGG | 0.337859 | 8.4:-36448046 | None:intergenic |
CTCTCAAAAGCCTCTTCTAA+TGG | 0.341934 | 8.4:-36448384 | None:intergenic |
CTAAGATGATATCTGAATCT+AGG | 0.344853 | 8.4:-36448015 | None:intergenic |
TTTATAAACATCACCTTCTC+TGG | 0.349912 | 8.4:-36448483 | None:intergenic |
CATAATCTTTGTCACTATAA+AGG | 0.357838 | 8.4:-36448180 | None:intergenic |
GGGAGCATGTATTAGGATAC+TGG | 0.379480 | 8.4:+36448442 | MS.gene038491:CDS |
CAAAATCCTTGATATATTGA+TGG | 0.392458 | 8.4:-36447938 | None:intergenic |
TTAGTTACTGCTCCCAAATC+AGG | 0.404570 | 8.4:+36448034 | MS.gene038491:CDS |
GGGAATAAGAGCATGAGGAT+TGG | 0.413282 | 8.4:-36448143 | None:intergenic |
GATTCTTCTTCATTGGAGAA+TGG | 0.413955 | 8.4:-36448570 | None:intergenic |
CAATATTTGGATATTTCTTA+CGG | 0.418013 | 8.4:-36448096 | None:intergenic |
GTTGTGGCCAAGTCGGAGAT+TGG | 0.420403 | 8.4:+36448706 | MS.gene038491:CDS |
TCCTAATACATGCTCCCAAA+AGG | 0.440613 | 8.4:-36448436 | None:intergenic |
AACACCAGATGATATTCTTC+CGG | 0.447963 | 8.4:-36448664 | None:intergenic |
TAAGATGATATCTGAATCTA+GGG | 0.463673 | 8.4:-36448014 | None:intergenic |
GTTGATTTCCACCTTGCCAT+TGG | 0.463950 | 8.4:+36447890 | MS.gene038491:CDS |
TATATCATCAACCATGCCCT+TGG | 0.479593 | 8.4:-36448592 | None:intergenic |
AAAATCCTTGATATATTGAT+GGG | 0.490549 | 8.4:-36447937 | None:intergenic |
TTGGAGGAGATAAAGAGTTA+AGG | 0.499984 | 8.4:-36448210 | None:intergenic |
CAAAACCCATCAATATATCA+AGG | 0.511751 | 8.4:+36447932 | MS.gene038491:CDS |
GGAGATAAAGAGTTAAGGTC+AGG | 0.512452 | 8.4:-36448205 | None:intergenic |
AGGATACTGGAAGGAAAGCT+TGG | 0.517004 | 8.4:+36448455 | MS.gene038491:CDS |
ATGTGTGTGGAGAAGAGTCT+TGG | 0.523883 | 8.4:-36448229 | None:intergenic |
ATGAGGATTGGAAGTGAGCA+AGG | 0.524088 | 8.4:-36448131 | None:intergenic |
ATAAAGGTCAATCTCCAAGA+AGG | 0.527045 | 8.4:-36448164 | None:intergenic |
CCTAATACATGCTCCCAAAA+GGG | 0.544320 | 8.4:-36448435 | None:intergenic |
AAAGCCTCTTCTAATGGAAG+TGG | 0.551607 | 8.4:-36448378 | None:intergenic |
CTCCAATGAAGAAGAATCCA+AGG | 0.560806 | 8.4:+36448575 | MS.gene038491:CDS |
AACTTGGAAGTCAACAAGAC+CGG | 0.566392 | 8.4:+36448645 | MS.gene038491:CDS |
TGTGTGGAGAAGAGTCTTGG+AGG | 0.574446 | 8.4:-36448226 | None:intergenic |
AAGACCGGAAGAATATCATC+TGG | 0.579303 | 8.4:+36448660 | MS.gene038491:CDS |
TAAAGGTCAATCTCCAAGAA+GGG | 0.581441 | 8.4:-36448163 | None:intergenic |
TGTGAAAGAGTCAACTTGCA+AGG | 0.588731 | 8.4:+36448276 | MS.gene038491:CDS |
GATTGGAAGTGAGCAAGGGA+TGG | 0.591628 | 8.4:-36448126 | None:intergenic |
TGACTTAAGCCAAGAATGCA+AGG | 0.597377 | 8.4:+36447866 | None:intergenic |
AAGCTTGGAATGGCCAGAGA+AGG | 0.599769 | 8.4:+36448470 | MS.gene038491:CDS |
AGGACCACTTCCATTAGAAG+AGG | 0.602220 | 8.4:+36448374 | MS.gene038491:CDS |
TGAAGAAGAATCCAAGGGCA+TGG | 0.602522 | 8.4:+36448581 | MS.gene038491:CDS |
AAGGTAAGAGCACAAAGTAG+AGG | 0.616375 | 8.4:+36448354 | MS.gene038491:intron |
AAGAAGGGAATAAGAGCATG+AGG | 0.620170 | 8.4:-36448148 | None:intergenic |
AAAATAAATTGGCTAAACAT+GGG | 0.626860 | 8.4:+36448778 | MS.gene038491:CDS |
TCTGACAAGATAAAACACCT+TGG | 0.628186 | 8.4:-36447979 | None:intergenic |
CTCCCAAATCAGGTACCACA+TGG | 0.632823 | 8.4:+36448044 | MS.gene038491:CDS |
ACTGGAAGGAAAGCTTGGAA+TGG | 0.643311 | 8.4:+36448460 | MS.gene038491:CDS |
GCATGTATTAGGATACTGGA+AGG | 0.646638 | 8.4:+36448446 | MS.gene038491:CDS |
TCCAATGAAGAAGAATCCAA+GGG | 0.650057 | 8.4:+36448576 | MS.gene038491:CDS |
TGAGGATTGGAAGTGAGCAA+GGG | 0.659064 | 8.4:-36448130 | None:intergenic |
CAAAACACAAGGAATGTGTG+TGG | 0.663380 | 8.4:-36448242 | None:intergenic |
AGTCAATGCTTTGAGCCATG+TGG | 0.682609 | 8.4:-36448059 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATCTTTTTCAAATAAAAACT+AGG | - | chr8.4:36448531-36448550 | None:intergenic | 15.0% |
!! | AAAAATAAATTGGCTAAACA+TGG | + | chr8.4:36448777-36448796 | MS.gene038491:CDS | 20.0% |
!! | AAAATAAATTGGCTAAACAT+GGG | + | chr8.4:36448778-36448797 | MS.gene038491:CDS | 20.0% |
!! | AAAATCCTTGATATATTGAT+GGG | - | chr8.4:36447940-36447959 | None:intergenic | 20.0% |
!! | CAATATTTGGATATTTCTTA+CGG | - | chr8.4:36448099-36448118 | None:intergenic | 20.0% |
!!! | ATGTTTAGCCAATTTATTTT+TGG | - | chr8.4:36448778-36448797 | None:intergenic | 20.0% |
! | CAAAATCCTTGATATATTGA+TGG | - | chr8.4:36447941-36447960 | None:intergenic | 25.0% |
! | CACTATCACCAAAAATAAAT+TGG | + | chr8.4:36448767-36448786 | MS.gene038491:CDS | 25.0% |
! | CATAATCTTTGTCACTATAA+AGG | - | chr8.4:36448183-36448202 | None:intergenic | 25.0% |
! | TAAGATGATATCTGAATCTA+GGG | - | chr8.4:36448017-36448036 | None:intergenic | 25.0% |
!! | AAAAAGATGACTGAGTTTTT+GGG | + | chr8.4:36448543-36448562 | MS.gene038491:CDS | 25.0% |
!! | CATCAATATATCAAGGATTT+TGG | + | chr8.4:36447939-36447958 | MS.gene038491:CDS | 25.0% |
AAGACATGTTTGTTTCACTT+TGG | + | chr8.4:36448319-36448338 | MS.gene038491:intron | 30.0% | |
AGTGAAACAAACATGTCTTT+AGG | - | chr8.4:36448318-36448337 | None:intergenic | 30.0% | |
CAAAACCCATCAATATATCA+AGG | + | chr8.4:36447932-36447951 | MS.gene038491:CDS | 30.0% | |
CTAAGATGATATCTGAATCT+AGG | - | chr8.4:36448018-36448037 | None:intergenic | 30.0% | |
GGATGGTTATGATCAATATT+TGG | - | chr8.4:36448112-36448131 | None:intergenic | 30.0% | |
TTTATAAACATCACCTTCTC+TGG | - | chr8.4:36448486-36448505 | None:intergenic | 30.0% | |
! | GAAAAAGATGACTGAGTTTT+TGG | + | chr8.4:36448542-36448561 | MS.gene038491:CDS | 30.0% |
!!! | CTTGATATATTGATGGGTTT+TGG | - | chr8.4:36447934-36447953 | None:intergenic | 30.0% |
AACACCAGATGATATTCTTC+CGG | - | chr8.4:36448667-36448686 | None:intergenic | 35.0% | |
ACTTTGGCATTTCTCAAACA+AGG | + | chr8.4:36448335-36448354 | MS.gene038491:intron | 35.0% | |
ATAAAGGTCAATCTCCAAGA+AGG | - | chr8.4:36448167-36448186 | None:intergenic | 35.0% | |
ATAGCCACAAAAATTCTCCA+AGG | + | chr8.4:36447962-36447981 | MS.gene038491:CDS | 35.0% | |
GATTCTTCTTCATTGGAGAA+TGG | - | chr8.4:36448573-36448592 | None:intergenic | 35.0% | |
TAAAGGTCAATCTCCAAGAA+GGG | - | chr8.4:36448166-36448185 | None:intergenic | 35.0% | |
TCCAATGAAGAAGAATCCAA+GGG | + | chr8.4:36448576-36448595 | MS.gene038491:CDS | 35.0% | |
TCTGACAAGATAAAACACCT+TGG | - | chr8.4:36447982-36448001 | None:intergenic | 35.0% | |
TTGGAGGAGATAAAGAGTTA+AGG | - | chr8.4:36448213-36448232 | None:intergenic | 35.0% | |
! | AACACCTTGGAGAATTTTTG+TGG | - | chr8.4:36447969-36447988 | None:intergenic | 35.0% |
!! | AAAATCCAGGCTTTTTCCAA+TGG | - | chr8.4:36447909-36447928 | None:intergenic | 35.0% |
!! | GATTTTGGCAACAAAACACA+AGG | - | chr8.4:36448256-36448275 | None:intergenic | 35.0% |
!! | GCTTTTGAGAGTTTTTGTAG+AGG | + | chr8.4:36448396-36448415 | MS.gene038491:CDS | 35.0% |
!! | GTTGACTCTTTCACAGATTT+TGG | - | chr8.4:36448271-36448290 | None:intergenic | 35.0% |
!! | TTTTGAGAAGTTGAGCAACT+TGG | + | chr8.4:36448629-36448648 | MS.gene038491:CDS | 35.0% |
!!! | AGCAAAGCTTTTTTTCGTTG+TGG | + | chr8.4:36448690-36448709 | MS.gene038491:CDS | 35.0% |
!!! | ATGGGTTTTGGTTAAAATCC+AGG | - | chr8.4:36447922-36447941 | None:intergenic | 35.0% |
AAAGCCTCTTCTAATGGAAG+TGG | - | chr8.4:36448381-36448400 | None:intergenic | 40.0% | |
AACTTGGAAGTCAACAAGAC+CGG | + | chr8.4:36448645-36448664 | MS.gene038491:CDS | 40.0% | |
AAGACCGGAAGAATATCATC+TGG | + | chr8.4:36448660-36448679 | MS.gene038491:CDS | 40.0% | |
CAAAACACAAGGAATGTGTG+TGG | - | chr8.4:36448245-36448264 | None:intergenic | 40.0% | |
CCTAATACATGCTCCCAAAA+GGG | - | chr8.4:36448438-36448457 | None:intergenic | 40.0% | |
CTCCAATGAAGAAGAATCCA+AGG | + | chr8.4:36448575-36448594 | MS.gene038491:CDS | 40.0% | |
CTCTCAAAAGCCTCTTCTAA+TGG | - | chr8.4:36448387-36448406 | None:intergenic | 40.0% | |
GCATGTATTAGGATACTGGA+AGG | + | chr8.4:36448446-36448465 | MS.gene038491:CDS | 40.0% | |
GGAGATAAAGAGTTAAGGTC+AGG | - | chr8.4:36448208-36448227 | None:intergenic | 40.0% | |
TATATCATCAACCATGCCCT+TGG | - | chr8.4:36448595-36448614 | None:intergenic | 40.0% | |
TCATGCTCTTATTCCCTTCT+TGG | + | chr8.4:36448150-36448169 | MS.gene038491:CDS | 40.0% | |
TCCTAATACATGCTCCCAAA+AGG | - | chr8.4:36448439-36448458 | None:intergenic | 40.0% | |
TGTAGAGGAGTGAGTTCTTA+TGG | + | chr8.4:36448411-36448430 | MS.gene038491:CDS | 40.0% | |
TGTGAAAGAGTCAACTTGCA+AGG | + | chr8.4:36448276-36448295 | MS.gene038491:CDS | 40.0% | |
TTAGTTACTGCTCCCAAATC+AGG | + | chr8.4:36448034-36448053 | MS.gene038491:CDS | 40.0% | |
! | AAGAAGGGAATAAGAGCATG+AGG | - | chr8.4:36448151-36448170 | None:intergenic | 40.0% |
! | AAGGTAAGAGCACAAAGTAG+AGG | + | chr8.4:36448354-36448373 | MS.gene038491:intron | 40.0% |
! | GAGTTCTTATGGACCCTTTT+GGG | + | chr8.4:36448422-36448441 | MS.gene038491:CDS | 40.0% |
! | TGAGTTCTTATGGACCCTTT+TGG | + | chr8.4:36448421-36448440 | MS.gene038491:CDS | 40.0% |
!!! | TTTTTTCGTTGTGGCCAAGT+CGG | + | chr8.4:36448699-36448718 | MS.gene038491:CDS | 40.0% |
ACTGGAAGGAAAGCTTGGAA+TGG | + | chr8.4:36448460-36448479 | MS.gene038491:CDS | 45.0% | |
AGCCATGTGGTACCTGATTT+GGG | - | chr8.4:36448049-36448068 | None:intergenic | 45.0% | |
AGGACCACTTCCATTAGAAG+AGG | + | chr8.4:36448374-36448393 | MS.gene038491:CDS | 45.0% | |
AGGATACTGGAAGGAAAGCT+TGG | + | chr8.4:36448455-36448474 | MS.gene038491:CDS | 45.0% | |
ATGAGGATTGGAAGTGAGCA+AGG | - | chr8.4:36448134-36448153 | None:intergenic | 45.0% | |
ATGTGTGTGGAGAAGAGTCT+TGG | - | chr8.4:36448232-36448251 | None:intergenic | 45.0% | |
GCCCTTGGATTCTTCTTCAT+TGG | - | chr8.4:36448580-36448599 | None:intergenic | 45.0% | |
TGAAGAAGAATCCAAGGGCA+TGG | + | chr8.4:36448581-36448600 | MS.gene038491:CDS | 45.0% | |
TGAGGATTGGAAGTGAGCAA+GGG | - | chr8.4:36448133-36448152 | None:intergenic | 45.0% | |
! | AGTCAATGCTTTGAGCCATG+TGG | - | chr8.4:36448062-36448081 | None:intergenic | 45.0% |
! | CGTTTTTCCAATCTCCGACT+TGG | - | chr8.4:36448716-36448735 | None:intergenic | 45.0% |
! | GGGAATAAGAGCATGAGGAT+TGG | - | chr8.4:36448146-36448165 | None:intergenic | 45.0% |
! | GGGAGCATGTATTAGGATAC+TGG | + | chr8.4:36448442-36448461 | MS.gene038491:CDS | 45.0% |
! | GTTGATTTCCACCTTGCCAT+TGG | + | chr8.4:36447890-36447909 | MS.gene038491:CDS | 45.0% |
!! | CCCTTTTGGGAGCATGTATT+AGG | + | chr8.4:36448435-36448454 | MS.gene038491:CDS | 45.0% |
AAGCTTGGAATGGCCAGAGA+AGG | + | chr8.4:36448470-36448489 | MS.gene038491:CDS | 50.0% | |
CCTTGCCATTGGAAAAAGCC+TGG | + | chr8.4:36447901-36447920 | MS.gene038491:CDS | 50.0% | |
CTCCCAAATCAGGTACCACA+TGG | + | chr8.4:36448044-36448063 | MS.gene038491:CDS | 50.0% | |
GAGCCATGTGGTACCTGATT+TGG | - | chr8.4:36448050-36448069 | None:intergenic | 50.0% | |
GATTGGAAGTGAGCAAGGGA+TGG | - | chr8.4:36448129-36448148 | None:intergenic | 50.0% | |
TGTGTGGAGAAGAGTCTTGG+AGG | - | chr8.4:36448229-36448248 | None:intergenic | 50.0% | |
!! | CCAGGCTTTTTCCAATGGCA+AGG | - | chr8.4:36447904-36447923 | None:intergenic | 50.0% |
!! | GGCTTTTTCCAATGGCAAGG+TGG | - | chr8.4:36447901-36447920 | None:intergenic | 50.0% |
GTTGTGGCCAAGTCGGAGAT+TGG | + | chr8.4:36448706-36448725 | MS.gene038491:CDS | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.4 | gene | 36447881 | 36448812 | 36447881 | ID=MS.gene038491 |
chr8.4 | mRNA | 36447881 | 36448812 | 36447881 | ID=MS.gene038491.t1;Parent=MS.gene038491 |
chr8.4 | exon | 36447881 | 36448297 | 36447881 | ID=MS.gene038491.t1.exon1;Parent=MS.gene038491.t1 |
chr8.4 | CDS | 36447881 | 36448297 | 36447881 | ID=cds.MS.gene038491.t1;Parent=MS.gene038491.t1 |
chr8.4 | exon | 36448357 | 36448812 | 36448357 | ID=MS.gene038491.t1.exon2;Parent=MS.gene038491.t1 |
chr8.4 | CDS | 36448357 | 36448812 | 36448357 | ID=cds.MS.gene038491.t1;Parent=MS.gene038491.t1 |
Gene Sequence |
Protein sequence |