AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene03907

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene03907.t1 MTR_3g031770 96.320 462 16 1 1 462 1 461 0.0 929
MS.gene03907.t1 MTR_2g027560 47.430 428 221 2 27 450 27 454 5.33e-141 414
MS.gene03907.t1 MTR_1g010120 44.872 468 249 6 10 468 6 473 1.07e-138 407
MS.gene03907.t1 MTR_4g124440 44.244 443 240 5 20 456 20 461 5.07e-128 381
MS.gene03907.t1 MTR_4g112025 40.000 460 265 7 8 459 14 470 6.35e-122 366
MS.gene03907.t1 MTR_1g053320 41.978 455 253 8 15 460 19 471 6.51e-121 362
MS.gene03907.t1 MTR_7g085390 44.622 437 234 7 26 455 24 459 9.82e-120 359
MS.gene03907.t1 MTR_3g108600 43.681 451 229 7 12 457 16 446 5.32e-119 357
MS.gene03907.t1 MTR_3g095050 41.972 436 246 7 27 457 33 466 2.81e-115 348
MS.gene03907.t1 MTR_8g092070 39.387 457 266 6 27 478 33 483 3.00e-114 348
MS.gene03907.t1 MTR_6g032820 45.301 415 216 8 26 430 24 437 1.43e-113 342
MS.gene03907.t1 MTR_4g134280 46.628 341 174 3 116 450 2 340 1.17e-107 325
MS.gene03907.t1 MTR_4g088155 33.111 450 269 19 22 447 17 458 2.43e-65 218
MS.gene03907.t1 MTR_1g031900 35.520 442 242 16 28 446 24 445 5.47e-61 207
MS.gene03907.t1 MTR_1g031900 35.520 442 242 16 28 446 24 445 7.47e-61 207
MS.gene03907.t1 MTR_6g088885 31.461 445 262 16 28 446 27 454 3.61e-60 205
MS.gene03907.t1 MTR_1g056640 30.803 461 273 13 27 447 37 491 1.25e-58 201
MS.gene03907.t1 MTR_5g085580 32.373 451 266 13 28 447 25 467 3.19e-58 199
MS.gene03907.t1 MTR_4g069940 31.590 459 285 14 6 447 14 460 5.29e-57 196
MS.gene03907.t1 MTR_8g085720 32.192 438 265 13 28 447 26 449 8.86e-57 196
MS.gene03907.t1 MTR_3g116510 31.429 455 290 13 9 446 5 454 1.78e-56 194
MS.gene03907.t1 MTR_3g065460 30.642 483 293 15 10 469 5 468 1.34e-54 190
MS.gene03907.t1 MTR_4g132280 31.486 451 264 16 28 454 45 474 2.22e-54 190
MS.gene03907.t1 MTR_5g078200 30.835 467 282 14 10 454 5 452 5.78e-53 189
MS.gene03907.t1 MTR_8g012400 29.873 472 293 19 1 447 1 459 5.74e-52 182
MS.gene03907.t1 MTR_7g053500 29.186 442 281 17 29 447 27 459 4.27e-51 180
MS.gene03907.t1 MTR_3g083580 30.769 455 282 15 10 446 7 446 4.03e-50 178
MS.gene03907.t1 MTR_5g078200 30.805 435 260 14 42 454 4 419 4.53e-50 180
MS.gene03907.t1 MTR_4g010200 34.783 322 198 8 29 343 34 350 1.07e-48 172
MS.gene03907.t1 MTR_7g026340 31.057 454 260 22 23 446 18 448 3.38e-48 172
MS.gene03907.t1 MTR_4g076570 31.366 322 210 7 25 343 19 332 8.69e-48 169
MS.gene03907.t1 MTR_1g052430 31.988 322 208 7 25 343 29 342 1.39e-47 169
MS.gene03907.t1 MTR_4g076255 33.333 330 186 14 25 343 22 328 8.16e-47 165
MS.gene03907.t1 MTR_4g076470 32.143 336 209 12 12 342 4 325 5.20e-46 163
MS.gene03907.t1 MTR_4g083500 28.632 475 292 15 20 459 36 498 5.24e-46 168
MS.gene03907.t1 MTR_4g076490 34.688 320 190 12 28 343 97 401 9.04e-46 165
MS.gene03907.t1 MTR_8g102340 32.203 413 225 19 71 446 24 418 1.32e-45 166
MS.gene03907.t1 MTR_4g076500 31.889 323 205 10 25 343 75 386 4.55e-45 162
MS.gene03907.t1 MTR_2g034440 30.312 320 214 6 25 342 19 331 4.61e-45 160
MS.gene03907.t1 MTR_4g076440 31.657 338 210 13 12 343 4 326 2.54e-44 159
MS.gene03907.t1 MTR_2g034480 29.940 334 225 6 15 346 14 340 9.86e-44 158
MS.gene03907.t1 MTR_4g076430 32.249 338 208 13 12 343 4 326 1.20e-43 157
MS.gene03907.t1 MTR_4g084480 32.184 348 219 10 13 351 17 356 2.52e-43 157
MS.gene03907.t1 MTR_4g084480 32.184 348 219 10 13 351 10 349 3.40e-43 157
MS.gene03907.t1 MTR_4g084480 32.184 348 219 10 13 351 17 356 3.56e-43 157
MS.gene03907.t1 MTR_2g034470 30.473 338 225 7 25 360 27 356 7.97e-43 155
MS.gene03907.t1 MTR_3g080410 34.251 327 197 10 27 343 25 343 4.21e-42 153
MS.gene03907.t1 MTR_4g114850 31.195 343 217 10 29 359 27 362 1.43e-41 152
MS.gene03907.t1 MTR_7g081350 31.230 317 203 9 24 336 23 328 3.04e-41 150
MS.gene03907.t1 MTR_4g114850 31.790 324 205 9 29 343 27 343 5.56e-41 151
MS.gene03907.t1 MTR_4g114850 31.790 324 205 9 29 343 27 343 6.29e-41 150
MS.gene03907.t1 MTR_1g022160 28.509 456 284 14 28 446 24 474 6.94e-41 153
MS.gene03907.t1 MTR_2g034470 30.395 329 218 8 35 360 1 321 1.15e-40 149
MS.gene03907.t1 MTR_1g022160 28.289 456 285 14 28 446 24 474 1.78e-40 152
MS.gene03907.t1 MTR_7g053500 28.974 390 245 17 81 447 2 382 7.63e-40 148
MS.gene03907.t1 MTR_1g022160 27.778 468 289 15 28 458 24 479 7.80e-39 147
MS.gene03907.t1 MTR_4g052970 30.631 333 209 12 27 348 28 349 1.67e-37 141
MS.gene03907.t1 MTR_1g007810 33.537 328 195 13 18 333 4 320 4.23e-37 140
MS.gene03907.t1 MTR_8g012400 29.231 390 241 17 81 447 2 379 5.89e-37 140
MS.gene03907.t1 MTR_7g081370 29.841 315 195 9 25 336 25 316 9.27e-36 135
MS.gene03907.t1 MTR_2g019345 30.172 348 224 12 8 345 3 341 6.88e-34 132
MS.gene03907.t1 MTR_3g116510 30.530 321 207 9 139 446 3 320 2.30e-33 129
MS.gene03907.t1 MTR_1g022160 30.183 328 216 9 28 347 24 346 2.40e-32 128
MS.gene03907.t1 MTR_2g086530 29.096 354 220 13 7 345 8 345 9.92e-32 125
MS.gene03907.t1 MTR_2g086530 29.819 332 202 13 29 345 9 324 4.66e-31 123
MS.gene03907.t1 MTR_1g077990 28.701 331 220 10 21 343 24 346 6.34e-30 121
MS.gene03907.t1 MTR_5g081720 27.245 323 212 11 44 355 53 363 2.75e-28 115
MS.gene03907.t1 MTR_8g085440 45.631 103 42 5 352 447 21 116 3.41e-17 77.8
MS.gene03907.t1 MTR_4g036680 35.714 98 57 3 248 343 82 175 1.01e-13 70.9
MS.gene03907.t1 MTR_8g085420 44.792 96 39 5 352 440 21 109 1.42e-13 68.2
MS.gene03907.t1 MTR_4g036775 35.714 98 57 3 248 343 82 175 3.20e-13 69.3
MS.gene03907.t1 MTR_8g085390 43.617 94 49 4 357 447 22 114 3.89e-12 65.5
MS.gene03907.t1 MTR_4g079530 37.113 97 56 4 365 457 37 132 3.16e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene03907.t1 AT5G58480 68.056 432 134 2 26 455 24 453 0.0 614
MS.gene03907.t1 AT4G17180 46.404 431 220 4 24 450 21 444 3.72e-143 419
MS.gene03907.t1 AT5G20870 44.754 467 244 7 3 457 6 470 5.95e-133 394
MS.gene03907.t1 AT4G31140 43.488 453 249 5 9 455 6 457 2.19e-132 392
MS.gene03907.t1 AT5G58090 43.886 458 252 5 25 477 19 476 1.63e-131 389
MS.gene03907.t1 AT3G24330 43.006 479 263 8 8 477 18 495 2.95e-129 384
MS.gene03907.t1 AT2G19440 45.312 448 235 9 10 450 4 448 2.16e-124 371
MS.gene03907.t1 AT2G19440 45.312 448 235 9 10 450 4 448 2.16e-124 371
MS.gene03907.t1 AT5G64790 42.000 450 255 6 16 460 16 464 8.59e-124 370
MS.gene03907.t1 AT1G64760 42.620 481 267 8 4 477 1 479 1.55e-122 366
MS.gene03907.t1 AT1G64760 42.620 481 267 8 4 477 1 479 1.55e-122 366
MS.gene03907.t1 AT3G04010 42.795 458 250 9 27 474 32 487 2.94e-122 366
MS.gene03907.t1 AT5G18220 42.333 463 248 10 27 473 29 488 1.35e-118 357
MS.gene03907.t1 AT4G26830 33.115 459 281 13 8 447 1 452 5.98e-68 224
MS.gene03907.t1 AT4G26830 33.790 438 268 12 25 447 26 456 8.26e-67 222
MS.gene03907.t1 AT5G55180 33.485 439 271 11 25 447 24 457 1.85e-66 221
MS.gene03907.t1 AT5G55180 33.565 432 266 11 25 440 24 450 1.16e-63 214
MS.gene03907.t1 AT4G14080 32.174 460 264 17 17 447 34 474 3.65e-62 210
MS.gene03907.t1 AT2G01630 34.615 442 248 15 28 447 23 445 5.82e-62 210
MS.gene03907.t1 AT3G23770 31.416 452 276 17 21 447 30 472 3.92e-61 207
MS.gene03907.t1 AT2G01630 34.483 435 244 15 28 440 23 438 3.01e-60 204
MS.gene03907.t1 AT5G56590 32.662 447 254 16 28 446 26 453 5.07e-59 202
MS.gene03907.t1 AT1G66250 32.727 440 256 15 28 446 32 452 2.54e-58 201
MS.gene03907.t1 AT2G05790 31.486 451 274 12 27 447 24 469 5.24e-58 199
MS.gene03907.t1 AT3G07320 31.306 444 281 15 22 447 19 456 2.57e-57 197
MS.gene03907.t1 AT4G34480 31.360 456 288 13 6 447 4 448 6.07e-56 194
MS.gene03907.t1 AT1G11820 31.306 444 260 16 28 447 44 466 1.78e-55 193
MS.gene03907.t1 AT1G11820 31.178 433 261 15 28 440 44 459 3.46e-53 186
MS.gene03907.t1 AT5G24318 30.573 471 286 18 1 446 1 455 6.82e-53 185
MS.gene03907.t1 AT5G24318 30.753 465 281 18 1 440 1 449 8.01e-52 182
MS.gene03907.t1 AT3G13560 32.723 437 260 13 28 446 26 446 8.93e-51 180
MS.gene03907.t1 AT3G13560 32.723 437 260 13 28 446 26 446 8.93e-51 180
MS.gene03907.t1 AT3G13560 32.723 437 260 13 28 446 26 446 8.93e-51 180
MS.gene03907.t1 AT3G13560 32.723 437 260 13 28 446 26 446 8.93e-51 180
MS.gene03907.t1 AT3G13560 32.723 437 260 13 28 446 26 446 8.93e-51 180
MS.gene03907.t1 AT2G16230 30.769 455 251 19 28 447 25 450 2.80e-50 179
MS.gene03907.t1 AT3G57260 33.333 321 197 7 28 345 32 338 7.94e-50 174
MS.gene03907.t1 AT2G39640 29.956 454 297 18 3 448 4 444 9.38e-50 178
MS.gene03907.t1 AT3G57260 33.333 321 197 7 28 345 48 354 2.43e-49 172
MS.gene03907.t1 AT3G55430 30.444 450 267 20 21 446 22 449 7.18e-49 174
MS.gene03907.t1 AT4G29360 27.066 484 304 15 7 452 9 481 9.68e-47 170
MS.gene03907.t1 AT3G57270 32.308 325 201 8 28 345 27 339 1.27e-46 165
MS.gene03907.t1 AT4G29360 26.767 467 296 14 24 452 33 491 6.85e-46 168
MS.gene03907.t1 AT2G01630 33.245 379 216 13 28 390 23 380 4.45e-44 159
MS.gene03907.t1 AT3G57240 32.710 321 198 8 28 345 35 340 4.29e-43 155
MS.gene03907.t1 AT4G16260 30.448 335 217 10 13 343 10 332 4.17e-42 153
MS.gene03907.t1 AT4G34480 31.831 355 226 9 6 351 4 351 8.91e-41 150
MS.gene03907.t1 AT3G61810 30.564 337 209 8 20 344 47 370 3.83e-40 149
MS.gene03907.t1 AT3G15800 31.928 332 210 9 29 351 44 368 5.07e-40 149
MS.gene03907.t1 AT2G26600 31.481 324 206 9 29 343 35 351 6.92e-40 148
MS.gene03907.t1 AT5G24318 31.034 377 226 16 13 369 7 369 1.33e-39 147
MS.gene03907.t1 AT4G16260 30.464 302 195 9 46 343 13 303 1.52e-38 142
MS.gene03907.t1 AT5G42720 31.389 360 220 12 5 349 3 350 5.46e-38 144
MS.gene03907.t1 AT3G55780 29.395 347 202 10 28 350 31 358 1.98e-37 141
MS.gene03907.t1 AT4G18340 27.957 372 249 11 3 363 7 370 5.64e-37 140
MS.gene03907.t1 AT4G18340 27.957 372 249 11 3 363 7 370 1.01e-36 140
MS.gene03907.t1 AT1G11820 30.655 336 210 11 28 349 44 370 1.72e-36 139
MS.gene03907.t1 AT1G30080 29.630 351 227 11 2 343 13 352 9.34e-36 137
MS.gene03907.t1 AT1G30080 29.630 351 227 11 2 343 13 352 2.10e-35 136
MS.gene03907.t1 AT4G34480 31.269 323 199 11 139 447 24 337 2.41e-33 130
MS.gene03907.t1 AT5G20340 28.025 314 210 8 25 333 40 342 5.13e-33 129
MS.gene03907.t1 AT5G24318 29.503 322 202 11 142 446 3 316 1.30e-32 127
MS.gene03907.t1 AT3G46570 29.513 349 226 12 12 350 11 349 2.51e-32 127
MS.gene03907.t1 AT1G33220 27.848 316 214 8 23 333 29 335 2.53e-32 126
MS.gene03907.t1 AT5G20560 27.217 327 221 9 14 333 18 334 4.98e-32 125
MS.gene03907.t1 AT5G20390 25.526 333 230 9 7 333 12 332 1.23e-31 124
MS.gene03907.t1 AT5G42100 30.588 340 220 11 16 345 15 348 1.91e-31 125
MS.gene03907.t1 AT5G42100 30.000 340 222 11 16 345 15 348 2.10e-31 125
MS.gene03907.t1 AT2G27500 27.410 332 224 10 26 348 27 350 1.54e-30 122
MS.gene03907.t1 AT2G27500 27.410 332 224 10 26 348 27 350 2.73e-30 122
MS.gene03907.t1 AT5G20330 27.848 316 212 9 23 333 29 333 2.65e-29 118
MS.gene03907.t1 AT1G32860 28.049 328 217 11 27 343 28 347 6.80e-28 115
MS.gene03907.t1 AT1G77780 25.890 309 214 8 29 333 25 322 1.04e-26 111
MS.gene03907.t1 AT2G26600 29.167 264 171 9 89 343 1 257 1.51e-23 100
MS.gene03907.t1 AT1G77790 25.714 350 241 10 2 343 3 341 2.12e-23 101
MS.gene03907.t1 AT2G27500 25.090 279 192 10 79 348 2 272 1.19e-16 81.3
MS.gene03907.t1 AT5G63225 35.556 90 46 4 362 444 22 106 2.17e-11 61.2
MS.gene03907.t1 AT1G66870 34.343 99 62 2 351 446 39 137 4.07e-11 61.2
MS.gene03907.t1 AT1G66870 34.343 99 62 2 351 446 12 110 6.48e-11 59.7

Find 103 sgRNAs with CRISPR-Local

Find 224 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATGTTCTTCAAGCTCTTTC+TGG 0.064067 3.2:+56114632 MS.gene03907:CDS
AACAACCCTCTTGGCATCTT+TGG 0.240136 3.2:+56117996 MS.gene03907:CDS
CGTCTAATGCAGAACTTTAC+AGG 0.243220 3.2:+56117941 MS.gene03907:CDS
GAAACAACGATTTCCATATT+AGG 0.260145 3.2:-56117361 None:intergenic
TGCAACTGCAAAAGCTTTAG+AGG 0.278675 3.2:+56117714 MS.gene03907:CDS
GAGCTGAAAGTTGTGACTTT+GGG 0.288892 3.2:+56117851 MS.gene03907:CDS
AAAAGTAGGATTTCCTAATA+TGG 0.301102 3.2:+56117348 MS.gene03907:CDS
ATGTTCTTCAAGCTCTTTCT+GGG 0.303137 3.2:+56114633 MS.gene03907:CDS
CAGAAGTTTCACTACTTTCA+TGG 0.320356 3.2:-56114564 None:intergenic
ATCCATCAGATGATCGTTGC+AGG 0.343975 3.2:+56117899 MS.gene03907:CDS
CTAGAAAAGTTGCTGATACT+TGG 0.346987 3.2:+56114714 MS.gene03907:CDS
TTTCACTTTGTTGATGTTGT+TGG 0.356479 3.2:-56114591 None:intergenic
TGCTATGAAGGTGGTTCATT+AGG 0.360141 3.2:-56117453 None:intergenic
GTTACTCGCTATGTTTCTAA+TGG 0.362830 3.2:+56114749 MS.gene03907:CDS
GAACCATTTCTTAAAAGTTA+TGG 0.367487 3.2:+56116950 MS.gene03907:CDS
TAGGCCTTTCATGAAGGTTT+CGG 0.367684 3.2:-56117434 None:intergenic
TACAGAAGCGATGTTGAAAA+TGG 0.373007 3.2:-56114489 None:intergenic
TCAAAATACCACGTGGATCT+TGG 0.373693 3.2:+56117601 MS.gene03907:CDS
GAAATCGTTGTTTCAAAGAT+TGG 0.377594 3.2:+56117370 MS.gene03907:CDS
TGGAGATTTCGAAAGGCATT+GGG 0.385946 3.2:+56117555 MS.gene03907:CDS
CTGAAGCCATAGGTGTGAAC+TGG 0.396483 3.2:+56114513 MS.gene03907:CDS
ACTACTTTCATGGGTGGTAG+TGG 0.404757 3.2:-56114554 None:intergenic
CTGGAGATTTCGAAAGGCAT+TGG 0.409493 3.2:+56117554 MS.gene03907:CDS
TGGGGCTTATTCACCTTTGA+CGG 0.419927 3.2:+56117574 MS.gene03907:CDS
CGTCCACCGAAGCGCATCTC+AGG 0.423281 3.2:+56117104 MS.gene03907:CDS
GTCTGAAGGAAGGTTAGAAA+TGG 0.425622 3.2:-56117205 None:intergenic
AGAGCTGAAAGTTGTGACTT+TGG 0.430370 3.2:+56117850 MS.gene03907:CDS
TAGAAAAGTTGCTGATACTT+GGG 0.449639 3.2:+56114715 MS.gene03907:CDS
AACCCTCTTGGCATCTTTGG+AGG 0.454084 3.2:+56117999 MS.gene03907:CDS
GATTGTACTGCACTATCTTC+TGG 0.457633 3.2:+56117751 MS.gene03907:CDS
GAAGAAGGTGAATGTGATGA+AGG 0.457940 3.2:-56114456 None:intergenic
GAAAGAGCTTGAAGAACATC+AGG 0.463063 3.2:-56114629 None:intergenic
GAAGGTTAGAAATGGAGAAA+TGG 0.475933 3.2:-56117197 None:intergenic
GGTTCCCCAGTTCACACCTA+TGG 0.476387 3.2:-56114519 None:intergenic
AGAAGTTTCACTACTTTCAT+GGG 0.477674 3.2:-56114563 None:intergenic
GGAGAAATGGTCACAAAGAA+AGG 0.481696 3.2:-56117184 None:intergenic
ATACCACGTGGATCTTGGCC+AGG 0.491196 3.2:+56117606 MS.gene03907:CDS
CGAACAATTCCATCCCTTCA+CGG 0.491302 3.2:+56116973 MS.gene03907:CDS
TGGTAGTGGGTGTGAAGCCA+TGG 0.492289 3.2:-56114540 None:intergenic
ATGCGCTTCGGTGGACGAGT+TGG 0.498782 3.2:-56117098 None:intergenic
CTGAAAGTTGTGACTTTGGG+GGG 0.500962 3.2:+56117854 MS.gene03907:CDS
CTACTTTCATGGGTGGTAGT+GGG 0.501203 3.2:-56114553 None:intergenic
GTTCATTAGGCCTTTCATGA+AGG 0.505894 3.2:-56117440 None:intergenic
GCGTTTGCAGCTCCATCGGT+TGG 0.511309 3.2:-56117397 None:intergenic
TTTACTAGTAACAACCCTCT+TGG 0.516527 3.2:+56117987 MS.gene03907:CDS
AAAGCATATGATATATTACT+AGG 0.522566 3.2:-56117799 None:intergenic
GAACCACCTTCATAGCAACT+TGG 0.525889 3.2:+56117459 MS.gene03907:CDS
GTGTTCCCAAGTTGCTATGA+AGG 0.527307 3.2:-56117465 None:intergenic
GAAGGTTTCGGCTAAGAAAG+AGG 0.527357 3.2:-56117422 None:intergenic
GGTTGCGTTTGCAGCTCCAT+CGG 0.532945 3.2:-56117401 None:intergenic
GCTCTTTCTGGGTCTAACAT+TGG 0.536633 3.2:+56114644 MS.gene03907:CDS
GTCAGACCTGAGATGCGCTT+CGG 0.538256 3.2:-56117110 None:intergenic
CAATTCCATCCCTTCACGGT+TGG 0.538597 3.2:+56116977 MS.gene03907:CDS
TGAAGCCATAGGTGTGAACT+GGG 0.539101 3.2:+56114514 MS.gene03907:CDS
AAGATTGGTTGGCCAACCGA+TGG 0.542326 3.2:+56117385 MS.gene03907:CDS
TCGTTGTTTCAAAGATTGGT+TGG 0.548740 3.2:+56117374 MS.gene03907:CDS
TTAGCCGAAACCTTCATGAA+AGG 0.550000 3.2:+56117430 MS.gene03907:CDS
CAGCACCAACCGTGAAGGGA+TGG 0.553892 3.2:-56116982 None:intergenic
TCCTTTGATCCTCGTCGAGA+AGG 0.557780 3.2:-56117522 None:intergenic
GCCTTCTCGACGAGGATCAA+AGG 0.558390 3.2:+56117521 MS.gene03907:CDS
TGTATGTTTCGTGTGGTGGC+CGG 0.561056 3.2:-56117492 None:intergenic
AATGGTGAAGAAGAAGAAGA+AGG 0.561907 3.2:-56114471 None:intergenic
TAAATGTATGTTTCGTGTGG+TGG 0.562388 3.2:-56117496 None:intergenic
ACTGCACGCCCTCATAAACT+TGG 0.565039 3.2:+56117265 MS.gene03907:CDS
TTAGACGTGTGAATCTCAAT+CGG 0.569631 3.2:-56117925 None:intergenic
TCACTAGGCTCTTTGTACCC+TGG 0.570415 3.2:-56117624 None:intergenic
GATCAAAGGAGCATTACAGC+TGG 0.573291 3.2:+56117535 MS.gene03907:CDS
AACCTGCAACGATCATCTGA+TGG 0.575288 3.2:-56117901 None:intergenic
TTCCCAAGTTGCTATGAAGG+TGG 0.575432 3.2:-56117462 None:intergenic
AGCTGAAAGTTGTGACTTTG+GGG 0.575732 3.2:+56117852 MS.gene03907:CDS
TCTAACATTGGTGTCACTGT+TGG 0.577685 3.2:+56114656 MS.gene03907:CDS
TCGAGTATCTTTCTTCCAAG+TGG 0.578772 3.2:+56117659 MS.gene03907:CDS
TGTACTGCACTATCTTCTGG+TGG 0.582259 3.2:+56117754 MS.gene03907:CDS
AACCACCTTCATAGCAACTT+GGG 0.582302 3.2:+56117460 MS.gene03907:CDS
AGACCTGAGATGCGCTTCGG+TGG 0.586712 3.2:-56117107 None:intergenic
ATAGCAGCACCAACCGTGAA+GGG 0.587855 3.2:-56116986 None:intergenic
CATAGCAGCACCAACCGTGA+AGG 0.588280 3.2:-56116987 None:intergenic
GTTGTTCACAACACACCACT+TGG 0.588716 3.2:-56117674 None:intergenic
GTGTGCAGATATGTTGCTGT+TGG 0.595372 3.2:+56116923 MS.gene03907:intron
AGGTGTGAACTGGGGAACCA+TGG 0.597334 3.2:+56114523 MS.gene03907:CDS
GCTTCTGTATCTGAAGCCAT+AGG 0.609080 3.2:+56114503 MS.gene03907:CDS
TTACAGCTGGAGATTTCGAA+AGG 0.610814 3.2:+56117548 MS.gene03907:CDS
CATTTATAGCCTTCTCGACG+AGG 0.612382 3.2:+56117513 MS.gene03907:CDS
AACCTCCAAAGATGCCAAGA+GGG 0.615636 3.2:-56118001 None:intergenic
GTTTCGTGTGGTGGCCGGTG+TGG 0.617110 3.2:-56117487 None:intergenic
GATCTTGCTTTAACATCACA+TGG 0.619766 3.2:+56117776 MS.gene03907:CDS
ACGATCATCTGATGGATCAA+CGG 0.624728 3.2:-56117893 None:intergenic
AAATGTGAGGAGCTCGACCA+TGG 0.628665 3.2:-56117143 None:intergenic
AGTTTCACTACTTTCATGGG+TGG 0.633428 3.2:-56114560 None:intergenic
TCAAAACTATCAGAGCTGCA+TGG 0.634686 3.2:-56117067 None:intergenic
TACCACGTGGATCTTGGCCA+GGG 0.644204 3.2:+56117607 MS.gene03907:CDS
GCTGAAAGTTGTGACTTTGG+GGG 0.646682 3.2:+56117853 MS.gene03907:CDS
GGAGATTTCGAAAGGCATTG+GGG 0.654576 3.2:+56117556 MS.gene03907:CDS
GCAACTTGGGAACACCACAC+CGG 0.660003 3.2:+56117473 MS.gene03907:CDS
TGTGATGAAGGAAGAAACAG+TGG 0.672525 3.2:-56114444 None:intergenic
GTCTAATGCAGAACTTTACA+GGG 0.675662 3.2:+56117942 MS.gene03907:CDS
AAACCTCCAAAGATGCCAAG+AGG 0.686940 3.2:-56118002 None:intergenic
GTCTGACATCAACAAAACCA+TGG 0.694847 3.2:+56117126 MS.gene03907:CDS
CGGCCAATCAAAATACCACG+TGG 0.701867 3.2:+56117594 MS.gene03907:CDS
CGTGCTTGTCGAGAAATGTG+AGG 0.707226 3.2:-56117156 None:intergenic
CTATAAATGTATGTTTCGTG+TGG 0.708772 3.2:-56117499 None:intergenic
GAAGCCATAGGTGTGAACTG+GGG 0.767819 3.2:+56114515 MS.gene03907:CDS
TACCCTGGCCAAGATCCACG+TGG 0.769411 3.2:-56117609 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAATTTTTAATACATTGT+TGG + chr3.2:56114843-56114862 MS.gene03907:intron 10.0%
!! AGAAAATATAGAATTAAAAG+AGG - chr3.2:56114807-56114826 None:intergenic 15.0%
!! TCAAAAAAAAATATTCACTT+TGG - chr3.2:56116026-56116045 None:intergenic 15.0%
!!! ATTTAAAACCATATATGTAA+AGG - chr3.2:56116896-56116915 None:intergenic 15.0%
!!! TGGATCTTATTTTAATATTT+TGG - chr3.2:56116006-56116025 None:intergenic 15.0%
!!! TTTAAAACCATATATGTAAA+GGG - chr3.2:56116895-56116914 None:intergenic 15.0%
!!! TTTTAGATGAAAATTTAACT+TGG + chr3.2:56116652-56116671 MS.gene03907:intron 15.0%
!! AAAGCATATGATATATTACT+AGG - chr3.2:56117802-56117821 None:intergenic 20.0%
!! AATTTAGTTGAACATATCTT+AGG - chr3.2:56116609-56116628 None:intergenic 20.0%
!! ATTGTTTGTTCTATAATTGT+GGG - chr3.2:56115234-56115253 None:intergenic 20.0%
!! GAATATTGTGTTAAAAATTG+TGG - chr3.2:56115730-56115749 None:intergenic 20.0%
!! TAAAATTTAACCAAATGTGT+TGG + chr3.2:56115134-56115153 MS.gene03907:intron 20.0%
!! TACTCTTAGTTGAAAAAATA+TGG + chr3.2:56116846-56116865 MS.gene03907:intron 20.0%
!! TATAGAATAAATAATGTCAC+AGG + chr3.2:56114984-56115003 MS.gene03907:intron 20.0%
!!! AAAAATTGTGGTTATTTTAC+AGG - chr3.2:56115718-56115737 None:intergenic 20.0%
!!! AAAATCAAGTGAAATGTTTT+TGG - chr3.2:56117230-56117249 None:intergenic 20.0%
!!! GTTTGTGTTATTAATAGTTA+GGG + chr3.2:56115277-56115296 MS.gene03907:intron 20.0%
!!! TGCTTTAAAAAAAGCAAAAT+TGG + chr3.2:56117021-56117040 MS.gene03907:CDS 20.0%
!!! TGCTTTTAATAGTTATTATC+AGG + chr3.2:56117816-56117835 MS.gene03907:CDS 20.0%
! AAAAGTAGGATTTCCTAATA+TGG + chr3.2:56117348-56117367 MS.gene03907:CDS 25.0%
! AATTATCAGCTAACATATTC+AGG + chr3.2:56116235-56116254 MS.gene03907:intron 25.0%
! ATAAAAGCTAATCATGAAAC+AGG + chr3.2:56116300-56116319 MS.gene03907:intron 25.0%
! ATGTTAGCTGATAATTTCTT+TGG - chr3.2:56116231-56116250 None:intergenic 25.0%
! CAATAATAAAGATGAATCGA+TGG + chr3.2:56116381-56116400 MS.gene03907:intron 25.0%
! CATAAATAATTCTTACCGTT+AGG - chr3.2:56115912-56115931 None:intergenic 25.0%
! CATTGTTTGTTCTATAATTG+TGG - chr3.2:56115235-56115254 None:intergenic 25.0%
! CTAACGGTAAGAATTATTTA+TGG + chr3.2:56115910-56115929 MS.gene03907:intron 25.0%
! GAACCATTTCTTAAAAGTTA+TGG + chr3.2:56116950-56116969 MS.gene03907:CDS 25.0%
! GTCGTCAACAATAATAATTT+AGG + chr3.2:56115099-56115118 MS.gene03907:intron 25.0%
! TATAGAACAAACAATGTCAT+AGG + chr3.2:56115239-56115258 MS.gene03907:intron 25.0%
! TATAGAAGTTTCATCTCATA+AGG + chr3.2:56115832-56115851 MS.gene03907:intron 25.0%
!! AAACTTTTGAGCAAAACATT+AGG - chr3.2:56114686-56114705 None:intergenic 25.0%
!! ATCACTGTTTTATCAAAAGT+AGG + chr3.2:56117334-56117353 MS.gene03907:CDS 25.0%
!! ATTTGTCAAAACTCTTTTCT+TGG + chr3.2:56116552-56116571 MS.gene03907:intron 25.0%
!! GGTTTGTGTTATTAATAGTT+AGG + chr3.2:56115276-56115295 MS.gene03907:intron 25.0%
!!! AGCTATTTTTGTATGTTTTG+TGG - chr3.2:56117291-56117310 None:intergenic 25.0%
!!! ATATTTGTTGTTATGTCCTT+TGG + chr3.2:56114894-56114913 MS.gene03907:intron 25.0%
AACTAATCACCTTAGTGAAA+GGG + chr3.2:56115618-56115637 MS.gene03907:intron 30.0%
AATGCAGTAGTTATGATTCA+TGG + chr3.2:56115426-56115445 MS.gene03907:intron 30.0%
AGAAGTTTCACTACTTTCAT+GGG - chr3.2:56114566-56114585 None:intergenic 30.0%
AGTCTTTACGTTATTACCAA+AGG - chr3.2:56114913-56114932 None:intergenic 30.0%
CACGATGTAAAATCTATAGA+TGG + chr3.2:56115518-56115537 MS.gene03907:intron 30.0%
CATACTTATTTGATGCTCTA+TGG - chr3.2:56116766-56116785 None:intergenic 30.0%
CTATAAATGTATGTTTCGTG+TGG - chr3.2:56117502-56117521 None:intergenic 30.0%
CTTGTCATTATCTCCTTATA+CGG - chr3.2:56116579-56116598 None:intergenic 30.0%
CTTTCATTTGCAATGAACAT+TGG - chr3.2:56115396-56115415 None:intergenic 30.0%
GAAACAACGATTTCCATATT+AGG - chr3.2:56117364-56117383 None:intergenic 30.0%
TAACATATTCAGGATCTGTT+TGG + chr3.2:56116245-56116264 MS.gene03907:intron 30.0%
TAGAAAAGTTGCTGATACTT+GGG + chr3.2:56114715-56114734 MS.gene03907:CDS 30.0%
TATAAGGAGATAATGACAAG+AGG + chr3.2:56116579-56116598 MS.gene03907:intron 30.0%
TATGACTCCCTTTACATATA+TGG + chr3.2:56116885-56116904 MS.gene03907:intron 30.0%
TGTTATTAATAGTTAGGGCA+GGG + chr3.2:56115282-56115301 MS.gene03907:intron 30.0%
TTTCACTTTGTTGATGTTGT+TGG - chr3.2:56114594-56114613 None:intergenic 30.0%
! CATCTATAGATTTTACATCG+TGG - chr3.2:56115520-56115539 None:intergenic 30.0%
! CTTCATTTTCACTTTCTAAG+TGG + chr3.2:56116503-56116522 MS.gene03907:intron 30.0%
! CTTCTGTAGTCTTAATCATA+GGG - chr3.2:56116346-56116365 None:intergenic 30.0%
! GAAATCGTTGTTTCAAAGAT+TGG + chr3.2:56117370-56117389 MS.gene03907:CDS 30.0%
! GGTAAATTTTCTGCAAACAA+GGG + chr3.2:56115663-56115682 MS.gene03907:intron 30.0%
! TAATGTTACTGTTTTCTCAG+TGG + chr3.2:56116712-56116731 MS.gene03907:intron 30.0%
! TGGTAAATTTTCTGCAAACA+AGG + chr3.2:56115662-56115681 MS.gene03907:intron 30.0%
! TGTTCTATAATTGTGGGTTT+TGG - chr3.2:56115228-56115247 None:intergenic 30.0%
! TTGGTTTGAGAAAATAAGGA+AGG + chr3.2:56116264-56116283 MS.gene03907:intron 30.0%
!! CTGTTTGGTTTGAGAAAATA+AGG + chr3.2:56116260-56116279 MS.gene03907:intron 30.0%
!! TCGCCATAACTTTTAAGAAA+TGG - chr3.2:56116956-56116975 None:intergenic 30.0%
AATCTAGCATCTTAGGACTT+GGG - chr3.2:56116207-56116226 None:intergenic 35.0%
AATGGTGAAGAAGAAGAAGA+AGG - chr3.2:56114474-56114493 None:intergenic 35.0%
ACTAATCACCTTAGTGAAAG+GGG + chr3.2:56115619-56115638 MS.gene03907:intron 35.0%
ATGTTCTTCAAGCTCTTTCT+GGG + chr3.2:56114633-56114652 MS.gene03907:CDS 35.0%
ATTCAATTAGCAGCTTGAGT+TGG + chr3.2:56116060-56116079 MS.gene03907:intron 35.0%
CAAGAATTAGTCACTGAATG+AGG + chr3.2:56114948-56114967 MS.gene03907:intron 35.0%
CAGAAGTTTCACTACTTTCA+TGG - chr3.2:56114567-56114586 None:intergenic 35.0%
CCTATGATTAAGACTACAGA+AGG + chr3.2:56116344-56116363 MS.gene03907:intron 35.0%
CTAGAAAAGTTGCTGATACT+TGG + chr3.2:56114714-56114733 MS.gene03907:CDS 35.0%
CTTCTCTATGACAGAAAGAT+GGG - chr3.2:56115975-56115994 None:intergenic 35.0%
CTTGTGTGAGCTGATAAAAT+TGG + chr3.2:56115574-56115593 MS.gene03907:intron 35.0%
GAACTAATCACCTTAGTGAA+AGG + chr3.2:56115617-56115636 MS.gene03907:intron 35.0%
GAAGGTTAGAAATGGAGAAA+TGG - chr3.2:56117200-56117219 None:intergenic 35.0%
GATCTTGCTTTAACATCACA+TGG + chr3.2:56117776-56117795 MS.gene03907:CDS 35.0%
GCTGCTAATTGAATTCACTT+TGG - chr3.2:56116054-56116073 None:intergenic 35.0%
GTCTAATGCAGAACTTTACA+GGG + chr3.2:56117942-56117961 MS.gene03907:CDS 35.0%
GTCTGTTATCTAACATGTGT+CGG - chr3.2:56115163-56115182 None:intergenic 35.0%
GTGAAAATGAAGTTGCAACA+TGG - chr3.2:56116495-56116514 None:intergenic 35.0%
TAAATGTATGTTTCGTGTGG+TGG - chr3.2:56117499-56117518 None:intergenic 35.0%
TAAGATGGCACACATTATGT+TGG + chr3.2:56115642-56115661 MS.gene03907:intron 35.0%
TACAGAAGCGATGTTGAAAA+TGG - chr3.2:56114492-56114511 None:intergenic 35.0%
TCTTCTCTATGACAGAAAGA+TGG - chr3.2:56115976-56115995 None:intergenic 35.0%
TGGCATGAAACAAATGTAAG+AGG + chr3.2:56115446-56115465 MS.gene03907:intron 35.0%
TTAGACGTGTGAATCTCAAT+CGG - chr3.2:56117928-56117947 None:intergenic 35.0%
TTCACGAAAGAAGCAATAAC+CGG + chr3.2:56116407-56116426 MS.gene03907:intron 35.0%
TTCACTTTCTAAGTGGAGTT+GGG + chr3.2:56116510-56116529 MS.gene03907:intron 35.0%
TTGAGTACTTGATCTCTTGA+TGG + chr3.2:56115024-56115043 MS.gene03907:intron 35.0%
TTGTGGAAGATTAGTGATAC+TGG + chr3.2:56116438-56116457 MS.gene03907:intron 35.0%
TTTACTAGTAACAACCCTCT+TGG + chr3.2:56117987-56118006 MS.gene03907:CDS 35.0%
TTTCACTTTCTAAGTGGAGT+TGG + chr3.2:56116509-56116528 MS.gene03907:intron 35.0%
! CCTTCTGTAGTCTTAATCAT+AGG - chr3.2:56116347-56116366 None:intergenic 35.0%
! GTGTTATTAATAGTTAGGGC+AGG + chr3.2:56115281-56115300 MS.gene03907:intron 35.0%
! GTTACTCGCTATGTTTCTAA+TGG + chr3.2:56114749-56114768 MS.gene03907:CDS 35.0%
! TCGTTGTTTCAAAGATTGGT+TGG + chr3.2:56117374-56117393 MS.gene03907:CDS 35.0%
! TTTTGTGGCCAAGTTTATGA+GGG - chr3.2:56117276-56117295 None:intergenic 35.0%
!! ATTGTGGTTATTTTACAGGC+TGG - chr3.2:56115714-56115733 None:intergenic 35.0%
!!! AATGTTTTTGGTCTGAAGGA+AGG - chr3.2:56117218-56117237 None:intergenic 35.0%
!!! GTGAAATGTTTTTGGTCTGA+AGG - chr3.2:56117222-56117241 None:intergenic 35.0%
AACCACCTTCATAGCAACTT+GGG + chr3.2:56117460-56117479 MS.gene03907:CDS 40.0%
AGAGCTGAAAGTTGTGACTT+TGG + chr3.2:56117850-56117869 MS.gene03907:CDS 40.0%
AGCTGAAAGTTGTGACTTTG+GGG + chr3.2:56117852-56117871 MS.gene03907:CDS 40.0%
AGTTTCACTACTTTCATGGG+TGG - chr3.2:56114563-56114582 None:intergenic 40.0%
ATGGGAATGAAGGGATAAGT+TGG - chr3.2:56115957-56115976 None:intergenic 40.0%
CAAACAAGGGATTCTCTTCA+GGG + chr3.2:56115676-56115695 MS.gene03907:intron 40.0%
CAATCTAGCATCTTAGGACT+TGG - chr3.2:56116208-56116227 None:intergenic 40.0%
CGTCTAATGCAGAACTTTAC+AGG + chr3.2:56117941-56117960 MS.gene03907:CDS 40.0%
CTTGGGAGTTAAGACACATT+TGG - chr3.2:56116190-56116209 None:intergenic 40.0%
CTTTGGCAATCTAGCATCTT+AGG - chr3.2:56116214-56116233 None:intergenic 40.0%
GAAAGAGCTTGAAGAACATC+AGG - chr3.2:56114632-56114651 None:intergenic 40.0%
GAAGAAGGTGAATGTGATGA+AGG - chr3.2:56114459-56114478 None:intergenic 40.0%
GACAGAAAGATGGGAATGAA+GGG - chr3.2:56115966-56115985 None:intergenic 40.0%
GAGCTGAAAGTTGTGACTTT+GGG + chr3.2:56117851-56117870 MS.gene03907:CDS 40.0%
GATGTTCTTCAAGCTCTTTC+TGG + chr3.2:56114632-56114651 MS.gene03907:CDS 40.0%
GATTGTACTGCACTATCTTC+TGG + chr3.2:56117751-56117770 MS.gene03907:CDS 40.0%
GGAGAAATGGTCACAAAGAA+AGG - chr3.2:56117187-56117206 None:intergenic 40.0%
GTCATAGGTGTCAACTGAAT+GGG + chr3.2:56115254-56115273 MS.gene03907:intron 40.0%
GTCTGAAGGAAGGTTAGAAA+TGG - chr3.2:56117208-56117227 None:intergenic 40.0%
GTCTGACATCAACAAAACCA+TGG + chr3.2:56117126-56117145 MS.gene03907:CDS 40.0%
GTTCATTAGGCCTTTCATGA+AGG - chr3.2:56117443-56117462 None:intergenic 40.0%
TAGGCCTTTCATGAAGGTTT+CGG - chr3.2:56117437-56117456 None:intergenic 40.0%
TCAAAACTATCAGAGCTGCA+TGG - chr3.2:56117070-56117089 None:intergenic 40.0%
TCAAAATACCACGTGGATCT+TGG + chr3.2:56117601-56117620 MS.gene03907:CDS 40.0%
TCATAGGTGTCAACTGAATG+GGG + chr3.2:56115255-56115274 MS.gene03907:intron 40.0%
TCGAGTATCTTTCTTCCAAG+TGG + chr3.2:56117659-56117678 MS.gene03907:CDS 40.0%
TGACAGAAAGATGGGAATGA+AGG - chr3.2:56115967-56115986 None:intergenic 40.0%
TGCTACTAGGATTGCTTTGT+TGG + chr3.2:56116137-56116156 MS.gene03907:intron 40.0%
TGCTATGAAGGTGGTTCATT+AGG - chr3.2:56117456-56117475 None:intergenic 40.0%
TGTCATAGGTGTCAACTGAA+TGG + chr3.2:56115253-56115272 MS.gene03907:intron 40.0%
TGTGATGAAGGAAGAAACAG+TGG - chr3.2:56114447-56114466 None:intergenic 40.0%
TTACAGCTGGAGATTTCGAA+AGG + chr3.2:56117548-56117567 MS.gene03907:CDS 40.0%
TTAGCCGAAACCTTCATGAA+AGG + chr3.2:56117430-56117449 MS.gene03907:CDS 40.0%
! ACGATCATCTGATGGATCAA+CGG - chr3.2:56117896-56117915 None:intergenic 40.0%
! ATTGCTTTGTTGGAGACTCT+TGG + chr3.2:56116147-56116166 MS.gene03907:intron 40.0%
! CGACATTTTGAGCATTCACT+AGG - chr3.2:56117642-56117661 None:intergenic 40.0%
! CTCTTTTCTTGGTCCGTATA+AGG + chr3.2:56116563-56116582 MS.gene03907:intron 40.0%
! CTTGCATTTCAGTGTTGAAG+CGG + chr3.2:56115492-56115511 MS.gene03907:intron 40.0%
! GTTTTGTGGCCAAGTTTATG+AGG - chr3.2:56117277-56117296 None:intergenic 40.0%
! TGCAACTGCAAAAGCTTTAG+AGG + chr3.2:56117714-56117733 MS.gene03907:CDS 40.0%
! TGTCAGTGCTTCATAGGTTT+TGG - chr3.2:56115053-56115072 None:intergenic 40.0%
!! TCTAACATTGGTGTCACTGT+TGG + chr3.2:56114656-56114675 MS.gene03907:CDS 40.0%
!! TGGAGATTTCGAAAGGCATT+GGG + chr3.2:56117555-56117574 MS.gene03907:CDS 40.0%
!!! AGCTCTGATAGTTTTGAGTC+AGG + chr3.2:56117073-56117092 MS.gene03907:CDS 40.0%
!!! GATCCACGTGGTATTTTGAT+TGG - chr3.2:56117600-56117619 None:intergenic 40.0%
!!! GTATTTTGATTGGCCGTCAA+AGG - chr3.2:56117590-56117609 None:intergenic 40.0%
AAACCTCCAAAGATGCCAAG+AGG - chr3.2:56118005-56118024 None:intergenic 45.0%
AACAACCCTCTTGGCATCTT+TGG + chr3.2:56117996-56118015 MS.gene03907:CDS 45.0%
AACCTCCAAAGATGCCAAGA+GGG - chr3.2:56118004-56118023 None:intergenic 45.0%
AACCTGCAACGATCATCTGA+TGG - chr3.2:56117904-56117923 None:intergenic 45.0%
AATAACCGGAGGTAGTGTTG+TGG + chr3.2:56116421-56116440 MS.gene03907:intron 45.0%
ACCGTTAGGTGACGAAAATG+AGG - chr3.2:56115898-56115917 None:intergenic 45.0%
ACGAAAGAAGCAATAACCGG+AGG + chr3.2:56116410-56116429 MS.gene03907:intron 45.0%
ACTACTTTCATGGGTGGTAG+TGG - chr3.2:56114557-56114576 None:intergenic 45.0%
ATCCATCAGATGATCGTTGC+AGG + chr3.2:56117899-56117918 MS.gene03907:CDS 45.0%
ATCTTCCACAACACTACCTC+CGG - chr3.2:56116429-56116448 None:intergenic 45.0%
CATTTATAGCCTTCTCGACG+AGG + chr3.2:56117513-56117532 MS.gene03907:CDS 45.0%
CCATCTTACCCCTTTCACTA+AGG - chr3.2:56115630-56115649 None:intergenic 45.0%
CCGTTAGGTGACGAAAATGA+GGG - chr3.2:56115897-56115916 None:intergenic 45.0%
CCTTAGTGAAAGGGGTAAGA+TGG + chr3.2:56115627-56115646 MS.gene03907:intron 45.0%
CGAACAATTCCATCCCTTCA+CGG + chr3.2:56116973-56116992 MS.gene03907:CDS 45.0%
CGTTAGGTGACGAAAATGAG+GGG - chr3.2:56115896-56115915 None:intergenic 45.0%
CTACTTTCATGGGTGGTAGT+GGG - chr3.2:56114556-56114575 None:intergenic 45.0%
CTGAAAGTTGTGACTTTGGG+GGG + chr3.2:56117854-56117873 MS.gene03907:CDS 45.0%
CTGTTAGCTAGCATGCTACT+AGG + chr3.2:56116124-56116143 MS.gene03907:intron 45.0%
GAACCACCTTCATAGCAACT+TGG + chr3.2:56117459-56117478 MS.gene03907:CDS 45.0%
GAAGGTTTCGGCTAAGAAAG+AGG - chr3.2:56117425-56117444 None:intergenic 45.0%
GAAGTGGTATGTAGCAGAGT+TGG + chr3.2:56115304-56115323 MS.gene03907:intron 45.0%
GCAAACAAGGGATTCTCTTC+AGG + chr3.2:56115675-56115694 MS.gene03907:intron 45.0%
GCTCTTTCTGGGTCTAACAT+TGG + chr3.2:56114644-56114663 MS.gene03907:CDS 45.0%
GCTGAAAGTTGTGACTTTGG+GGG + chr3.2:56117853-56117872 MS.gene03907:CDS 45.0%
GTGTGCAGATATGTTGCTGT+TGG + chr3.2:56116923-56116942 MS.gene03907:intron 45.0%
GTGTTCCCAAGTTGCTATGA+AGG - chr3.2:56117468-56117487 None:intergenic 45.0%
GTTGTTCACAACACACCACT+TGG - chr3.2:56117677-56117696 None:intergenic 45.0%
TAATAGTTAGGGCAGGGAAG+TGG + chr3.2:56115288-56115307 MS.gene03907:intron 45.0%
TGAAGCCATAGGTGTGAACT+GGG + chr3.2:56114514-56114533 MS.gene03907:CDS 45.0%
TGGGGCTTATTCACCTTTGA+CGG + chr3.2:56117574-56117593 MS.gene03907:CDS 45.0%
TGTACGTGTCAGTGCTTCAT+AGG - chr3.2:56115059-56115078 None:intergenic 45.0%
TGTACTGCACTATCTTCTGG+TGG + chr3.2:56117754-56117773 MS.gene03907:CDS 45.0%
TTCCCAAGTTGCTATGAAGG+TGG - chr3.2:56117465-56117484 None:intergenic 45.0%
TTTCTAAGTGGAGTTGGGTG+AGG + chr3.2:56116515-56116534 MS.gene03907:intron 45.0%
! ACAGGGTGTGTAGTTTTCAG+TGG + chr3.2:56117959-56117978 MS.gene03907:CDS 45.0%
! AGGGATTCTCTTCAGGGTTT+TGG + chr3.2:56115682-56115701 MS.gene03907:intron 45.0%
! CCCTCATTTTCGTCACCTAA+CGG + chr3.2:56115894-56115913 MS.gene03907:intron 45.0%
! CTGGAGATTTCGAAAGGCAT+TGG + chr3.2:56117554-56117573 MS.gene03907:CDS 45.0%
! GCTTCTGTATCTGAAGCCAT+AGG + chr3.2:56114503-56114522 MS.gene03907:CDS 45.0%
!! GATCAAAGGAGCATTACAGC+TGG + chr3.2:56117535-56117554 MS.gene03907:CDS 45.0%
!! GGAGATTTCGAAAGGCATTG+GGG + chr3.2:56117556-56117575 MS.gene03907:CDS 45.0%
!! GTGTCGGTTTCCAACACATT+TGG - chr3.2:56115147-56115166 None:intergenic 45.0%
AAATGTGAGGAGCTCGACCA+TGG - chr3.2:56117146-56117165 None:intergenic 50.0%
AACCCTCTTGGCATCTTTGG+AGG + chr3.2:56117999-56118018 MS.gene03907:CDS 50.0%
ACTGCACGCCCTCATAAACT+TGG + chr3.2:56117265-56117284 MS.gene03907:CDS 50.0%
ATAGCAGCACCAACCGTGAA+GGG - chr3.2:56116989-56117008 None:intergenic 50.0%
CAATTCCATCCCTTCACGGT+TGG + chr3.2:56116977-56116996 MS.gene03907:CDS 50.0%
CGGCCAATCAAAATACCACG+TGG + chr3.2:56117594-56117613 MS.gene03907:CDS 50.0%
CGTGCTTGTCGAGAAATGTG+AGG - chr3.2:56117159-56117178 None:intergenic 50.0%
CTGAAGCCATAGGTGTGAAC+TGG + chr3.2:56114513-56114532 MS.gene03907:CDS 50.0%
GAAGCCATAGGTGTGAACTG+GGG + chr3.2:56114515-56114534 MS.gene03907:CDS 50.0%
TCACAGGTGTCAAGTGACTG+TGG + chr3.2:56115000-56115019 MS.gene03907:intron 50.0%
TCACTAGGCTCTTTGTACCC+TGG - chr3.2:56117627-56117646 None:intergenic 50.0%
TCCTTTGATCCTCGTCGAGA+AGG - chr3.2:56117525-56117544 None:intergenic 50.0%
TGTATGTTTCGTGTGGTGGC+CGG - chr3.2:56117495-56117514 None:intergenic 50.0%
! AAGATTGGTTGGCCAACCGA+TGG + chr3.2:56117385-56117404 MS.gene03907:CDS 50.0%
!! CTTGAGTTGGCATGAAAGCG+TGG + chr3.2:56116073-56116092 MS.gene03907:intron 50.0%
AGGTGTGAACTGGGGAACCA+TGG + chr3.2:56114523-56114542 MS.gene03907:CDS 55.0%
ATACCACGTGGATCTTGGCC+AGG + chr3.2:56117606-56117625 MS.gene03907:CDS 55.0%
CATAGCAGCACCAACCGTGA+AGG - chr3.2:56116990-56117009 None:intergenic 55.0%
GCAACTTGGGAACACCACAC+CGG + chr3.2:56117473-56117492 MS.gene03907:CDS 55.0%
GCCTTCTCGACGAGGATCAA+AGG + chr3.2:56117521-56117540 MS.gene03907:CDS 55.0%
GGTTCCCCAGTTCACACCTA+TGG - chr3.2:56114522-56114541 None:intergenic 55.0%
GGTTGCGTTTGCAGCTCCAT+CGG - chr3.2:56117404-56117423 None:intergenic 55.0%
GTCAGACCTGAGATGCGCTT+CGG - chr3.2:56117113-56117132 None:intergenic 55.0%
TACCACGTGGATCTTGGCCA+GGG + chr3.2:56117607-56117626 MS.gene03907:CDS 55.0%
! AGTTGTGACTTTGGGGGGCT+TGG + chr3.2:56117859-56117878 MS.gene03907:CDS 55.0%
!! TGGTAGTGGGTGTGAAGCCA+TGG - chr3.2:56114543-56114562 None:intergenic 55.0%
AGACCTGAGATGCGCTTCGG+TGG - chr3.2:56117110-56117129 None:intergenic 60.0%
ATGCGCTTCGGTGGACGAGT+TGG - chr3.2:56117101-56117120 None:intergenic 60.0%
CAGCACCAACCGTGAAGGGA+TGG - chr3.2:56116985-56117004 None:intergenic 60.0%
GCGTTTGCAGCTCCATCGGT+TGG - chr3.2:56117400-56117419 None:intergenic 60.0%
TACCCTGGCCAAGATCCACG+TGG - chr3.2:56117612-56117631 None:intergenic 60.0%
CGTCCACCGAAGCGCATCTC+AGG + chr3.2:56117104-56117123 MS.gene03907:CDS 65.0%
GTTTCGTGTGGTGGCCGGTG+TGG - chr3.2:56117490-56117509 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr3.2 gene 56114440 56118026 56114440 ID=MS.gene03907
chr3.2 mRNA 56114440 56118026 56114440 ID=MS.gene03907.t1;Parent=MS.gene03907
chr3.2 exon 56114440 56114783 56114440 ID=MS.gene03907.t1.exon1;Parent=MS.gene03907.t1
chr3.2 CDS 56114440 56114783 56114440 ID=cds.MS.gene03907.t1;Parent=MS.gene03907.t1
chr3.2 exon 56116931 56118026 56116931 ID=MS.gene03907.t1.exon2;Parent=MS.gene03907.t1
chr3.2 CDS 56116931 56118026 56116931 ID=cds.MS.gene03907.t1;Parent=MS.gene03907.t1
Gene Sequence

>MS.gene03907

ATGTCCACTGTTTCTTCCTTCATCACATTCACCTTCTTCTTCTTCTTCACCATTTTCAACATCGCTTCTGTATCTGAAGCCATAGGTGTGAACTGGGGAACCATGGCTTCACACCCACTACCACCCATGAAAGTAGTGAAACTTCTGAAGTCCAACAACATCAACAAAGTGAAACTGTTTGATGCAAAACCTGATGTTCTTCAAGCTCTTTCTGGGTCTAACATTGGTGTCACTGTTGGTATTCCTAATGTTTTGCTCAAAAGTTTGAATTCTTCTAGAAAAGTTGCTGATACTTGGGTTCATGATAATGTTACTCGCTATGTTTCTAATGGTGCTAAAATTGAGTATGTCACTTTTCTTTCTTCCTCTTTTAATTCTATATTTTCTTATTTTATATTATTTATTTAATTTTTAATACATTGTTGGTTTTTATTTTTTACTTTTTTTTCTTCTCATATTTGTTGTTATGTCCTTTGGTAATAACGTAAAGACTCAGTAAAGAGTGAAACAAGAATTAGTCACTGAATGAGGAAGTTTTATAGATTATAGAATAAATAATGTCACAGGTGTCAAGTGACTGTGGTTTGAGTACTTGATCTCTTGATGGTTGCCAAAACCTATGAAGCACTGACACGTACACGCACACTAGACTAACATGTGTCGTCAACAATAATAATTTAGGAAAATGAATTAATAAAATTTAACCAAATGTGTTGGAAACCGACACATGTTAGATAACAGACAACAGACACACTTTTGATCAGAAGTGTCGTGCGTGCTAGATGCCAAAACCCACAATTATAGAACAAACAATGTCATAGGTGTCAACTGAATGGGGTTTGTGTTATTAATAGTTAGGGCAGGGAAGTGGTATGTAGCAGAGTTGGAATGTGTCAAAGATAAAATGTAGCTACTGTGATAACTATGAGATAAAAGAACTAAAATTAGCTAAGCCAATGTTCATTGCAAATGAAAGCAGTGAATCAAATGCAGTAGTTATGATTCATGGCATGAAACAAATGTAAGAGGACTGCAATTGTTAGAATAGAATGCTTGCATTTCAGTGTTGAAGCGGCTCCACGATGTAAAATCTATAGATGGAATTTGATTTTAAAACAAATCATTTTTTTCTAACTTGTGTGAGCTGATAAAATTGGAAAATCAAATCAGTTATAAAGAACTAATCACCTTAGTGAAAGGGGTAAGATGGCACACATTATGTTGGTAAATTTTCTGCAAACAAGGGATTCTCTTCAGGGTTTTGGTATCTTCCAGCCTGTAAAATAACCACAATTTTTAACACAATATTCTTTCAAATGCAATAACAAAAGAAACTTGATAAAAAAATAGTAGCAGAAGAAAACAATTATAAACTAAATAGTGTAAAAGTTCTATAGAAGTTTCATCTCATAAGGTAGAGAAGTTTAATTATATTGTTTTAATATCGAGAATACCCCTCATTTTCGTCACCTAACGGTAAGAATTATTTATGGATTTTGCAATGACATAAAACACCAACTTATCCCTTCATTCCCATCTTTCTGTCATAGAGAAGAAGTTTATCCAAAATATTAAAATAAGATCCAAAGTGAATATTTTTTTTTGAAAAAACCAAAGTGAATTCAATTAGCAGCTTGAGTTGGCATGAAAGCGTGGAAATCTTGACTCATGATAAGATACATCACTGTTAGCTAGCATGCTACTAGGATTGCTTTGTTGGAGACTCTTGGTATACTATGTTTGCATTCCAAATGTGTCTTAACTCCCAAGTCCTAAGATGCTAGATTGCCAAAGAAATTATCAGCTAACATATTCAGGATCTGTTTGGTTTGAGAAAATAAGGAAGGAAATAATATGACAATAAAAGCTAATCATGAAACAGGATAGTTATACAAAATCAAATCCCTATGATTAAGACTACAGAAGGTGTGTGTTGTTTTTCAATAATAAAGATGAATCGATGGCTGTTCACGAAAGAAGCAATAACCGGAGGTAGTGTTGTGGAAGATTAGTGATACTGGTGTACATGATTTGTTACGATGACACTTTCAGCCATGTTGCAACTTCATTTTCACTTTCTAAGTGGAGTTGGGTGAGGTATTTCAACAACAAATTTGTCAAAACTCTTTTCTTGGTCCGTATAAGGAGATAATGACAAGAGGAGTTCCTAAGATATGTTCAACTAAATTTGCTTATATTTTGAATACACATATTTTAGATGAAAATTTAACTTGGTCATTTGTTCTTTTAAGAGTTGATTTTTGAACAGAATTAATGTTACTGTTTTCTCAGTGGTATATGCTAGATCAGATAAATTCACTAGCCATAGAGCATCAAATAAGTATGCTTTCTCAATGTTTTAATAAGCTAAAATTTGAACATGTAATTGAAACTTTTGAAAAAATTTACTCTTAGTTGAAAAAATATGGATATGTATTTCTGAAGTATGACTCCCTTTACATATATGGTTTTAAATTTAACTTGTGTGCAGATATGTTGCTGTTGGTGATGAACCATTTCTTAAAAGTTATGGCGAACAATTCCATCCCTTCACGGTTGGTGCTGCTATGAACATTCAAGCTGCTTTAAAAAAAGCAAAATTGGACAACAAAGTAAAAGTTGTAGTTCCATGCAGCTCTGATAGTTTTGAGTCAGGATCCAACTCGTCCACCGAAGCGCATCTCAGGTCTGACATCAACAAAACCATGGTCGAGCTCCTCACATTTCTCGACAAGCACGAATCACCTTTCTTTGTGACCATTTCTCCATTTCTAACCTTCCTTCAGACCAAAAACATTTCACTTGATTTTTCACTCTTCAAAGAAACTGCACGCCCTCATAAACTTGGCCACAAAACATACAAAAATAGCTTTGATATGAGCTACGATACAGTGATCACTGTTTTATCAAAAGTAGGATTTCCTAATATGGAAATCGTTGTTTCAAAGATTGGTTGGCCAACCGATGGAGCTGCAAACGCAACCTCTTTCTTAGCCGAAACCTTCATGAAAGGCCTAATGAACCACCTTCATAGCAACTTGGGAACACCACACCGGCCACCACACGAAACATACATTTATAGCCTTCTCGACGAGGATCAAAGGAGCATTACAGCTGGAGATTTCGAAAGGCATTGGGGCTTATTCACCTTTGACGGCCAATCAAAATACCACGTGGATCTTGGCCAGGGTACAAAGAGCCTAGTGAATGCTCAAAATGTCGAGTATCTTTCTTCCAAGTGGTGTGTTGTGAACAACAATGAAGACTTGTCTAATGCAACTGCAAAAGCTTTAGAGGCTTGTGCAAACGCTGATTGTACTGCACTATCTTCTGGTGGATCTTGCTTTAACATCACATGGCCTAGTAATATATCATATGCTTTTAATAGTTATTATCAGGAGCATGATCAAAGAGCTGAAAGTTGTGACTTTGGGGGGCTTGGCTTAATCACAACCGTTGATCCATCAGATGATCGTTGCAGGTTTCCGATTGAGATTCACACGTCTAATGCAGAACTTTACAGGGTGTGTAGTTTTCAGTGGTTGATTTTACTAGTAACAACCCTCTTGGCATCTTTGGAGGTTTGA
Protein sequence

>MS.gene03907.t1

MSTVSSFITFTFFFFFTIFNIASVSEAIGVNWGTMASHPLPPMKVVKLLKSNNINKVKLFDAKPDVLQALSGSNIGVTVGIPNVLLKSLNSSRKVADTWVHDNVTRYVSNGAKIEYVAVGDEPFLKSYGEQFHPFTVGAAMNIQAALKKAKLDNKVKVVVPCSSDSFESGSNSSTEAHLRSDINKTMVELLTFLDKHESPFFVTISPFLTFLQTKNISLDFSLFKETARPHKLGHKTYKNSFDMSYDTVITVLSKVGFPNMEIVVSKIGWPTDGAANATSFLAETFMKGLMNHLHSNLGTPHRPPHETYIYSLLDEDQRSITAGDFERHWGLFTFDGQSKYHVDLGQGTKSLVNAQNVEYLSSKWCVVNNNEDLSNATAKALEACANADCTALSSGGSCFNITWPSNISYAFNSYYQEHDQRAESCDFGGLGLITTVDPSDDRCRFPIEIHTSNAELYRVCSFQWLILLVTTLLASLEV