AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene039947

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene039947.t1 MTR_3g072630 95.732 328 11 2 1 325 1 328 0.0 632
MS.gene039947.t1 MTR_3g072630 95.706 326 11 2 1 323 1 326 0.0 627
MS.gene039947.t1 MTR_5g088720 34.252 254 145 5 20 266 7 245 8.09e-42 148
MS.gene039947.t1 MTR_5g088720 34.252 254 145 5 20 266 12 250 1.01e-41 147
MS.gene039947.t1 MTR_5g088720 34.252 254 145 5 20 266 53 291 2.33e-41 148
MS.gene039947.t1 MTR_1g051105 44.872 156 64 2 169 324 107 240 2.98e-40 142
MS.gene039947.t1 MTR_2g007340 33.684 285 147 9 1 274 1 254 1.24e-37 136
MS.gene039947.t1 MTR_0067s0100 31.419 296 157 8 20 301 8 271 1.65e-36 132
MS.gene039947.t1 MTR_1g114320 31.183 279 148 10 18 284 11 257 4.21e-35 130
MS.gene039947.t1 MTR_3g068005 30.980 255 154 6 20 269 7 244 4.06e-32 124
MS.gene039947.t1 MTR_6g079660 45.455 121 58 3 156 273 172 287 5.59e-32 123
MS.gene039947.t1 MTR_3g083480 30.027 373 161 16 20 320 9 353 8.75e-31 119
MS.gene039947.t1 MTR_2g097620 28.077 260 151 4 20 274 14 242 8.50e-30 116
MS.gene039947.t1 MTR_4g064570 29.365 252 136 5 20 266 12 226 2.11e-28 113
MS.gene039947.t1 MTR_5g080350 39.655 116 61 1 172 278 135 250 1.26e-25 105
MS.gene039947.t1 MTR_7g074170 39.130 115 67 2 162 273 283 397 2.59e-23 100
MS.gene039947.t1 MTR_1g114620 43.519 108 56 2 171 275 213 318 9.48e-22 94.4
MS.gene039947.t1 MTR_5g041310 35.252 139 78 4 137 272 37 166 8.66e-21 89.4
MS.gene039947.t1 MTR_5g041330 34.091 132 77 3 141 272 35 156 9.47e-21 89.4
MS.gene039947.t1 MTR_6g032960 39.423 104 54 2 172 271 188 286 1.68e-19 87.8
MS.gene039947.t1 MTR_4g110100 33.929 112 71 2 165 273 301 412 8.41e-17 80.9
MS.gene039947.t1 MTR_3g025510 35.514 107 68 1 164 270 49 154 1.67e-14 70.5
MS.gene039947.t1 MTR_3g088080 37.838 74 44 1 196 269 15 86 1.85e-14 68.2
MS.gene039947.t1 MTR_6g016350 35.714 98 60 2 179 273 266 363 8.47e-14 72.0
MS.gene039947.t1 MTR_5g058530 49.153 59 29 1 208 265 210 268 2.32e-13 70.1
MS.gene039947.t1 MTR_2g061790 35.849 106 58 2 221 317 109 213 8.69e-13 67.4
MS.gene039947.t1 MTR_1g014710 36.486 74 44 1 195 265 204 277 1.58e-12 67.4
MS.gene039947.t1 MTR_7g116200 36.585 82 51 1 183 263 55 136 3.36e-12 64.3
MS.gene039947.t1 MTR_5g022920 36.250 80 47 2 190 265 155 234 1.31e-11 63.9
MS.gene039947.t1 MTR_2g078440 43.478 69 38 1 197 264 228 296 6.65e-11 62.8
MS.gene039947.t1 MTR_8g037150 36.986 73 42 2 197 265 168 240 6.93e-11 62.0
MS.gene039947.t1 MTR_4g106960 43.939 66 28 1 197 262 163 219 7.76e-11 62.8
MS.gene039947.t1 MTR_4g106960 43.939 66 28 1 197 262 163 219 7.90e-11 62.8
MS.gene039947.t1 MTR_4g106960 43.939 66 28 1 197 262 220 276 9.55e-11 62.8
MS.gene039947.t1 MTR_4g106960 43.939 66 28 1 197 262 220 276 9.56e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene039947.t1 AT1G60360 42.857 322 166 10 1 311 1 315 3.03e-67 214
MS.gene039947.t1 AT3G56580 36.268 284 153 9 20 301 8 265 3.34e-45 157
MS.gene039947.t1 AT3G56580 36.268 284 153 9 20 301 8 265 3.34e-45 157
MS.gene039947.t1 AT3G56580 36.268 284 153 9 20 301 8 265 3.34e-45 157
MS.gene039947.t1 AT2G40830 36.576 257 130 10 20 269 8 238 4.89e-43 151
MS.gene039947.t1 AT2G40830 36.576 257 130 10 20 269 8 238 4.89e-43 151
MS.gene039947.t1 AT2G40830 36.576 257 130 10 20 269 8 238 4.89e-43 151
MS.gene039947.t1 AT2G40830 36.576 257 130 10 20 269 8 238 4.89e-43 151
MS.gene039947.t1 AT3G19950 34.328 268 148 9 18 274 19 269 8.39e-41 145
MS.gene039947.t1 AT3G19950 34.328 268 148 9 18 274 77 327 1.82e-40 145
MS.gene039947.t1 AT3G19950 34.328 268 148 9 18 274 77 327 1.82e-40 145
MS.gene039947.t1 AT5G56340 45.968 124 60 2 152 273 193 311 1.43e-30 119
MS.gene039947.t1 AT1G55530 29.730 259 146 8 20 270 9 239 3.50e-30 117
MS.gene039947.t1 AT1G55530 28.819 288 168 10 20 281 9 285 4.95e-30 117
MS.gene039947.t1 AT1G55530 28.819 288 168 10 20 281 9 285 4.95e-30 117
MS.gene039947.t1 AT3G13430 49.038 104 46 2 172 272 177 276 5.71e-30 116
MS.gene039947.t1 AT3G13430 49.038 104 46 2 172 272 177 276 5.71e-30 116
MS.gene039947.t1 AT3G13430 49.038 104 46 2 172 272 177 276 5.71e-30 116
MS.gene039947.t1 AT3G13430 49.038 104 46 2 172 272 177 276 5.71e-30 116
MS.gene039947.t1 AT3G10815 51.685 89 42 1 179 266 78 166 7.24e-28 107
MS.gene039947.t1 AT3G46620 30.000 270 144 9 20 275 31 269 4.70e-26 107
MS.gene039947.t1 AT2G39720 29.348 276 143 8 20 272 6 252 6.79e-26 107
MS.gene039947.t1 AT2G39720 29.348 276 143 8 20 272 6 252 6.79e-26 107
MS.gene039947.t1 AT1G68180 43.902 123 64 3 193 313 110 229 2.02e-25 102
MS.gene039947.t1 AT5G59550 36.842 133 75 2 163 288 241 371 7.16e-24 102
MS.gene039947.t1 AT5G59550 41.441 111 56 2 163 266 136 244 8.32e-24 101
MS.gene039947.t1 AT4G26400 44.330 97 47 2 172 266 195 286 1.95e-23 99.4
MS.gene039947.t1 AT4G26400 44.330 97 47 2 172 266 195 286 1.95e-23 99.4
MS.gene039947.t1 AT5G01980 39.640 111 65 1 165 273 292 402 2.68e-22 97.4
MS.gene039947.t1 AT3G60080 41.905 105 45 2 202 298 142 238 9.08e-19 85.5
MS.gene039947.t1 AT5G08139 35.833 120 67 3 164 273 242 361 1.37e-18 85.9
MS.gene039947.t1 AT2G44330 48.101 79 35 1 202 274 71 149 1.51e-18 82.4
MS.gene039947.t1 AT5G15820 34.314 102 64 2 168 266 235 336 3.95e-17 81.3
MS.gene039947.t1 AT1G26800 33.571 140 75 5 178 316 74 196 2.90e-16 76.6
MS.gene039947.t1 AT5G60820 43.590 78 40 1 193 266 340 417 3.74e-16 79.0
MS.gene039947.t1 AT3G02340 36.538 104 65 1 188 290 301 404 4.28e-16 79.0
MS.gene039947.t1 AT3G02340 36.538 104 65 1 188 290 301 404 4.28e-16 79.0
MS.gene039947.t1 AT1G14200 36.471 85 54 0 182 266 70 154 8.00e-15 72.0
MS.gene039947.t1 AT5G20910 37.864 103 56 3 178 274 183 283 8.55e-15 74.3
MS.gene039947.t1 AT5G64920 33.962 106 64 1 176 275 206 311 2.92e-14 72.8
MS.gene039947.t1 AT4G24015 49.206 63 27 2 218 275 102 164 7.82e-12 63.5
MS.gene039947.t1 AT2G03000 37.500 72 40 1 196 267 461 527 1.74e-11 65.5
MS.gene039947.t1 AT4G31450 46.296 54 29 0 216 269 443 496 3.62e-11 64.3
MS.gene039947.t1 AT4G31450 46.296 54 29 0 216 269 443 496 3.62e-11 64.3
MS.gene039947.t1 AT2G01735 34.483 87 50 2 188 271 275 357 5.13e-11 63.5
MS.gene039947.t1 AT1G04790 35.106 94 58 2 172 265 543 633 7.34e-11 63.5
MS.gene039947.t1 AT4G35840 37.037 81 46 2 190 265 156 236 9.03e-11 61.6
MS.gene039947.t1 AT3G19910 37.179 78 42 1 200 270 260 337 9.43e-11 62.4

Find 108 sgRNAs with CRISPR-Local

Find 117 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGGCGTCGGGTTTGGGTTTC+TGG -0.036611 3.1:+59496768 None:intergenic
CATGACGTGGGCGTCGGGTT+TGG 0.229750 3.1:+59496760 None:intergenic
GCTTCTAGTAAACGCGCTTC+TGG 0.237677 3.1:+59496831 None:intergenic
ATGACGTGGGCGTCGGGTTT+GGG 0.249529 3.1:+59496761 None:intergenic
ATTGCGTTTATACCTCTTTC+CGG 0.279704 3.1:+59496447 None:intergenic
CTGGTTCTGCTTCAAGAATA+AGG 0.284347 3.1:-59496092 MS.gene039947:CDS
GGACAAGAATTTCGTCTCTT+TGG 0.293654 3.1:-59496164 MS.gene039947:CDS
GTTCAGGTTCAGTTTGTGTT+TGG 0.298514 3.1:+59496688 None:intergenic
TGTCAAGAAGAGTTTGAAAT+TGG 0.316838 3.1:-59496369 MS.gene039947:CDS
GGAATCTCTTGACGACAAAT+TGG 0.318716 3.1:+59496264 None:intergenic
TTGATATGCCCCTGCTGCTT+TGG 0.328450 3.1:-59496924 MS.gene039947:CDS
CGGTGTTGGATCCCGGGTTC+AGG 0.338023 3.1:+59496672 None:intergenic
GCATCAACTCCGCGTGGAAT+TGG 0.341649 3.1:+59496552 None:intergenic
CTCTTTGGCCTTTCCATGGC+AGG 0.345906 3.1:-59496149 MS.gene039947:CDS
TGTTTATTTCACATATGAAT+TGG 0.346384 3.1:+59496901 None:intergenic
TTCAGGTTCAGTTTGTGTTT+GGG 0.363394 3.1:+59496689 None:intergenic
CCAGAACCATTGTCTCTTTG+AGG 0.367252 3.1:+59496111 None:intergenic
AAACGTGTTTGAATCGGAAT+TGG 0.369421 3.1:+59496608 None:intergenic
GGCGTCGGGTTTGGGTTTCT+GGG 0.372254 3.1:+59496769 None:intergenic
TCAAACTCTTCTTGACAAAC+AGG 0.384860 3.1:+59496375 None:intergenic
CTTCTAGTAAACGCGCTTCT+GGG 0.389670 3.1:+59496832 None:intergenic
TGGTTCTGCTTCAAGAATAA+GGG 0.395926 3.1:-59496091 MS.gene039947:CDS
TGTGGTGATGAAGGTGGTGG+TGG 0.400189 3.1:-59496213 MS.gene039947:CDS
CCTCAAAGAGACAATGGTTC+TGG 0.410933 3.1:-59496111 MS.gene039947:CDS
TGGTTGTTTATTCTCTCTCT+TGG 0.415418 3.1:+59497023 None:intergenic
CCTCTTTCCGGCACCGGTGG+TGG 0.418881 3.1:+59496459 None:intergenic
CGATTCAAACACGTTTCAAC+CGG 0.424278 3.1:-59496601 MS.gene039947:CDS
TGCGGACGGCGCGGTTGCAT+TGG 0.424746 3.1:+59496970 None:intergenic
GGGTTAAAGCGACGGATGGG+TGG 0.432478 3.1:+59496789 None:intergenic
GTTCAGTTTGTGTTTGGGTT+GGG 0.434037 3.1:+59496694 None:intergenic
GGTGATGAAGGTGGTGGTGG+AGG 0.434209 3.1:-59496210 MS.gene039947:CDS
ATCAAGTCAGAGGAGTTATA+TGG 0.436014 3.1:+59496942 None:intergenic
TATGAATTGGCCAAAGCAGC+AGG 0.443309 3.1:+59496914 None:intergenic
TTGTTTATTCTCTCTCTTGG+AGG 0.443470 3.1:+59497026 None:intergenic
ATGAAGGTGGTGGTGGAGGT+AGG 0.446302 3.1:-59496206 MS.gene039947:CDS
TCCAACACCGTCCACGTACA+TGG 0.446385 3.1:-59496659 MS.gene039947:CDS
GGTTCAGTTTGTGTTTGGGT+TGG 0.447683 3.1:+59496693 None:intergenic
GGCCTTTCCATGGCAGGTAT+CGG 0.448754 3.1:-59496143 MS.gene039947:CDS
TTCTGGGTTAAAGCGACGGA+TGG 0.449024 3.1:+59496785 None:intergenic
ACTCTGATTGTATTGTTCCA+TGG 0.456363 3.1:-59496308 MS.gene039947:CDS
CAAGAAGAGTTTGAAATTGG+TGG 0.457438 3.1:-59496366 MS.gene039947:CDS
ACGTGGACGGTGTTGGATCC+CGG 0.457633 3.1:+59496665 None:intergenic
CGTGGACGGTGTTGGATCCC+GGG 0.458200 3.1:+59496666 None:intergenic
TTTATACCTCTTTCCGGCAC+CGG 0.460655 3.1:+59496453 None:intergenic
GTTCCAGTGCGCCGTCGGAC+AGG 0.464229 3.1:-59496726 MS.gene039947:CDS
TTGAAATTGGTGGTGAAGCG+AGG 0.464387 3.1:-59496356 MS.gene039947:CDS
TCTCCTGTCCGACGGCGCAC+TGG 0.471289 3.1:+59496723 None:intergenic
TGTGGCATGACGTGGGCGTC+GGG 0.472184 3.1:+59496755 None:intergenic
GCAGGGTCCACCACCGGTGC+CGG 0.475669 3.1:-59496466 MS.gene039947:CDS
GTGTGGCATGACGTGGGCGT+CGG 0.475763 3.1:+59496754 None:intergenic
GTAGGTTACAAAGGTGTTTG+AGG 0.480521 3.1:-59496188 MS.gene039947:CDS
CCACCACCGGTGCCGGAAAG+AGG 0.484120 3.1:-59496459 MS.gene039947:CDS
CGGTTGAAACGTGTTTGAAT+CGG 0.491561 3.1:+59496602 None:intergenic
ACACAAACTGAACCTGAACC+CGG 0.494798 3.1:-59496684 MS.gene039947:CDS
GCACCGGTGGTGGACCCTGC+CGG 0.504051 3.1:+59496469 None:intergenic
GTGAAGTCTACGACGAGTCT+TGG 0.504527 3.1:+59496870 None:intergenic
TCGTCTCTTTGGCCTTTCCA+TGG 0.511179 3.1:-59496153 MS.gene039947:CDS
ACCAAATAACAGAAAATGAC+CGG 0.519700 3.1:-59496488 MS.gene039947:CDS
ATTGGTCCTTGTCGTCCACC+TGG 0.519875 3.1:+59496570 None:intergenic
TCTACGACGAGTCTTGGTCT+TGG 0.525811 3.1:+59496876 None:intergenic
TTTGAATCGGAATTGGAAGA+AGG 0.528606 3.1:+59496615 None:intergenic
AGTAAACGCGCTTCTGGGGA+AGG 0.533512 3.1:+59496837 None:intergenic
TCTGGGTTAAAGCGACGGAT+GGG 0.546330 3.1:+59496786 None:intergenic
GAAAATGAGTGTGGTGATGA+AGG 0.548010 3.1:-59496222 MS.gene039947:CDS
GTGGTGGAGGTAGGTTACAA+AGG 0.549094 3.1:-59496197 MS.gene039947:CDS
AATAACAGAAAATGACCGGC+AGG 0.549894 3.1:-59496484 MS.gene039947:CDS
GATGGGTGGGTCAAGCATGA+TGG 0.552583 3.1:+59496803 None:intergenic
GGGTTTCTGGGTTAAAGCGA+CGG 0.560254 3.1:+59496781 None:intergenic
GGTTAAAGCGACGGATGGGT+GGG 0.561633 3.1:+59496790 None:intergenic
TGAAATTGGTGGTGAAGCGA+GGG 0.569510 3.1:-59496355 MS.gene039947:CDS
GAGTGATATATATGTTTACA+TGG 0.571725 3.1:+59496327 None:intergenic
TGACCGGCAGGGTCCACCAC+CGG 0.573125 3.1:-59496472 MS.gene039947:CDS
ACTTCTTGTGTGGCATGACG+TGG 0.573297 3.1:+59496747 None:intergenic
GCGCACTGGAACTTCTTGTG+TGG 0.576661 3.1:+59496737 None:intergenic
CTCCGATACCTGCCATGGAA+AGG 0.580627 3.1:+59496141 None:intergenic
ATACCTCTTTCCGGCACCGG+TGG 0.585012 3.1:+59496456 None:intergenic
AAGAAGTTCCAGTGCGCCGT+CGG 0.587134 3.1:-59496731 MS.gene039947:CDS
TTCTAGTAAACGCGCTTCTG+GGG 0.588626 3.1:+59496833 None:intergenic
GGTTCTGCTTCAAGAATAAG+GGG 0.590069 3.1:-59496090 MS.gene039947:CDS
AGAGTTGAAAGTTTCTACGT+TGG 0.598580 3.1:+59497003 None:intergenic
CCCATGTACGTGGACGGTGT+TGG 0.598601 3.1:+59496658 None:intergenic
GGTGATGATCTCCTGTCCGA+CGG 0.599729 3.1:+59496715 None:intergenic
GAACTCTCCGATACCTGCCA+TGG 0.605766 3.1:+59496136 None:intergenic
GCAGGGGCATATCAAGTCAG+AGG 0.607585 3.1:+59496932 None:intergenic
GTTATATGGTGCAATGCGGA+CGG 0.609139 3.1:+59496956 None:intergenic
GAATTGGAAGAAGGATCCAC+AGG 0.610104 3.1:+59496624 None:intergenic
GAATTGTGAAGTCTAAGCCA+TGG 0.610327 3.1:+59496291 None:intergenic
ATGAATTGGCCAAAGCAGCA+GGG 0.610721 3.1:+59496915 None:intergenic
GGTTACAAAGGTGTTTGAGG+TGG 0.613541 3.1:-59496185 MS.gene039947:CDS
TCTATTAGTTCGTTAAAACC+CGG 0.613916 3.1:+59496510 None:intergenic
CACAAACTGAACCTGAACCC+GGG 0.615987 3.1:-59496683 MS.gene039947:CDS
TGAATTGGCCAAAGCAGCAG+GGG 0.622917 3.1:+59496916 None:intergenic
GTTCATCCTCAAAGAGACAA+TGG 0.630874 3.1:-59496117 MS.gene039947:CDS
ATGGGTCATTCTACAACCTG+TGG 0.633466 3.1:-59496640 MS.gene039947:CDS
GAGTGTGGTGATGAAGGTGG+TGG 0.634645 3.1:-59496216 MS.gene039947:CDS
TTCTGGGGAAGGATCATGTG+CGG 0.637567 3.1:+59496848 None:intergenic
CCAACACCGTCCACGTACAT+GGG 0.643084 3.1:-59496658 MS.gene039947:CDS
TCATCATCAGAAGAAGAACA+AGG 0.644794 3.1:+59496243 None:intergenic
AATGAGTGTGGTGATGAAGG+TGG 0.645504 3.1:-59496219 MS.gene039947:CDS
TGTAGAATGACCCATGTACG+TGG 0.664295 3.1:+59496648 None:intergenic
CTTCTTGTGTGGCATGACGT+GGG 0.672360 3.1:+59496748 None:intergenic
ATGGTGCAATGCGGACGGCG+CGG 0.678029 3.1:+59496961 None:intergenic
ATAACAGAAAATGACCGGCA+GGG 0.686987 3.1:-59496483 MS.gene039947:CDS
TCTCTTGCATCAACTCCGCG+TGG 0.689469 3.1:+59496546 None:intergenic
GAATGACCCATGTACGTGGA+CGG 0.707803 3.1:+59496652 None:intergenic
TCTGATGATGAAAATGAGTG+TGG 0.710936 3.1:-59496231 MS.gene039947:CDS
AGGAGTTATATGGTGCAATG+CGG 0.731326 3.1:+59496952 None:intergenic
CGACAAGGACCAATTCCACG+CGG 0.794135 3.1:-59496561 MS.gene039947:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGTTTATTTCACATATGAAT+TGG + chr3.1:59496223-59496242 None:intergenic 20.0%
! GAGTGATATATATGTTTACA+TGG + chr3.1:59496797-59496816 None:intergenic 25.0%
ACCAAATAACAGAAAATGAC+CGG - chr3.1:59496633-59496652 MS.gene039947:CDS 30.0%
TCTATTAGTTCGTTAAAACC+CGG + chr3.1:59496614-59496633 None:intergenic 30.0%
! TGTCAAGAAGAGTTTGAAAT+TGG - chr3.1:59496752-59496771 MS.gene039947:CDS 30.0%
!!! AAGAGACTATTTTTTTGGAC+CGG - chr3.1:59496592-59496611 MS.gene039947:CDS 30.0%
!!! GATGCAAGAGACTATTTTTT+TGG - chr3.1:59496587-59496606 MS.gene039947:CDS 30.0%
AAACGTGTTTGAATCGGAAT+TGG + chr3.1:59496516-59496535 None:intergenic 35.0%
ACTCTGATTGTATTGTTCCA+TGG - chr3.1:59496813-59496832 MS.gene039947:CDS 35.0%
AGAGTTGAAAGTTTCTACGT+TGG + chr3.1:59496121-59496140 None:intergenic 35.0%
ATCAAGTCAGAGGAGTTATA+TGG + chr3.1:59496182-59496201 None:intergenic 35.0%
ATTGCGTTTATACCTCTTTC+CGG + chr3.1:59496677-59496696 None:intergenic 35.0%
TCAAACTCTTCTTGACAAAC+AGG + chr3.1:59496749-59496768 None:intergenic 35.0%
TCATCATCAGAAGAAGAACA+AGG + chr3.1:59496881-59496900 None:intergenic 35.0%
TGGTTGTTTATTCTCTCTCT+TGG + chr3.1:59496101-59496120 None:intergenic 35.0%
TTGTTTATTCTCTCTCTTGG+AGG + chr3.1:59496098-59496117 None:intergenic 35.0%
TTTGAATCGGAATTGGAAGA+AGG + chr3.1:59496509-59496528 None:intergenic 35.0%
! CAAGAAGAGTTTGAAATTGG+TGG - chr3.1:59496755-59496774 MS.gene039947:CDS 35.0%
! TCTGATGATGAAAATGAGTG+TGG - chr3.1:59496890-59496909 MS.gene039947:CDS 35.0%
! TGGTTCTGCTTCAAGAATAA+GGG - chr3.1:59497030-59497049 MS.gene039947:CDS 35.0%
! TTCAGGTTCAGTTTGTGTTT+GGG + chr3.1:59496435-59496454 None:intergenic 35.0%
! TTGCTTTCGATTTTCACTGT+TGG + chr3.1:59496701-59496720 None:intergenic 35.0%
!!! AGAGACTATTTTTTTGGACC+GGG - chr3.1:59496593-59496612 MS.gene039947:CDS 35.0%
AATAACAGAAAATGACCGGC+AGG - chr3.1:59496637-59496656 MS.gene039947:CDS 40.0%
AGGAGTTATATGGTGCAATG+CGG + chr3.1:59496172-59496191 None:intergenic 40.0%
ATAACAGAAAATGACCGGCA+GGG - chr3.1:59496638-59496657 MS.gene039947:CDS 40.0%
CGATTCAAACACGTTTCAAC+CGG - chr3.1:59496520-59496539 MS.gene039947:CDS 40.0%
CGGTTGAAACGTGTTTGAAT+CGG + chr3.1:59496522-59496541 None:intergenic 40.0%
GAATTGTGAAGTCTAAGCCA+TGG + chr3.1:59496833-59496852 None:intergenic 40.0%
GGAATCTCTTGACGACAAAT+TGG + chr3.1:59496860-59496879 None:intergenic 40.0%
GGACAAGAATTTCGTCTCTT+TGG - chr3.1:59496957-59496976 MS.gene039947:CDS 40.0%
GGTTCTGCTTCAAGAATAAG+GGG - chr3.1:59497031-59497050 MS.gene039947:CDS 40.0%
GTTCATCCTCAAAGAGACAA+TGG - chr3.1:59497004-59497023 MS.gene039947:CDS 40.0%
! GAAAATGAGTGTGGTGATGA+AGG - chr3.1:59496899-59496918 MS.gene039947:CDS 40.0%
! GTTCAGGTTCAGTTTGTGTT+TGG + chr3.1:59496436-59496455 None:intergenic 40.0%
! GTTCAGTTTGTGTTTGGGTT+GGG + chr3.1:59496430-59496449 None:intergenic 40.0%
! TTTCAACCGGTGATTTTTCC+AGG - chr3.1:59496533-59496552 MS.gene039947:CDS 40.0%
!! CTGGTTCTGCTTCAAGAATA+AGG - chr3.1:59497029-59497048 MS.gene039947:CDS 40.0%
!! GCCGGTCATTTTCTGTTATT+TGG + chr3.1:59496637-59496656 None:intergenic 40.0%
!! GTAGGTTACAAAGGTGTTTG+AGG - chr3.1:59496933-59496952 MS.gene039947:CDS 40.0%
ACACAAACTGAACCTGAACC+CGG - chr3.1:59496437-59496456 MS.gene039947:CDS 45.0%
ATGAATTGGCCAAAGCAGCA+GGG + chr3.1:59496209-59496228 None:intergenic 45.0%
ATGGGTCATTCTACAACCTG+TGG - chr3.1:59496481-59496500 MS.gene039947:CDS 45.0%
CCAGAACCATTGTCTCTTTG+AGG + chr3.1:59497013-59497032 None:intergenic 45.0%
CCTCAAAGAGACAATGGTTC+TGG - chr3.1:59497010-59497029 MS.gene039947:CDS 45.0%
CTTCTAGTAAACGCGCTTCT+GGG + chr3.1:59496292-59496311 None:intergenic 45.0%
GAATTGGAAGAAGGATCCAC+AGG + chr3.1:59496500-59496519 None:intergenic 45.0%
GGTTCAGTTTGTGTTTGGGT+TGG + chr3.1:59496431-59496450 None:intergenic 45.0%
GTTATATGGTGCAATGCGGA+CGG + chr3.1:59496168-59496187 None:intergenic 45.0%
TATGAATTGGCCAAAGCAGC+AGG + chr3.1:59496210-59496229 None:intergenic 45.0%
TGTAGAATGACCCATGTACG+TGG + chr3.1:59496476-59496495 None:intergenic 45.0%
TTCTAGTAAACGCGCTTCTG+GGG + chr3.1:59496291-59496310 None:intergenic 45.0%
TTTATACCTCTTTCCGGCAC+CGG + chr3.1:59496671-59496690 None:intergenic 45.0%
! AATGAGTGTGGTGATGAAGG+TGG - chr3.1:59496902-59496921 MS.gene039947:CDS 45.0%
! ATTTTTCCAGGTGGACGACA+AGG - chr3.1:59496545-59496564 MS.gene039947:CDS 45.0%
!! GGTTACAAAGGTGTTTGAGG+TGG - chr3.1:59496936-59496955 MS.gene039947:CDS 45.0%
!! TGAAATTGGTGGTGAAGCGA+GGG - chr3.1:59496766-59496785 MS.gene039947:CDS 45.0%
!! TTGAAATTGGTGGTGAAGCG+AGG - chr3.1:59496765-59496784 MS.gene039947:CDS 45.0%
ACTTCTTGTGTGGCATGACG+TGG + chr3.1:59496377-59496396 None:intergenic 50.0%
CACAAACTGAACCTGAACCC+GGG - chr3.1:59496438-59496457 MS.gene039947:CDS 50.0%
CGTCCACCTGGAAAAATCAC+CGG + chr3.1:59496542-59496561 None:intergenic 50.0%
CTTCTTGTGTGGCATGACGT+GGG + chr3.1:59496376-59496395 None:intergenic 50.0%
GAATGACCCATGTACGTGGA+CGG + chr3.1:59496472-59496491 None:intergenic 50.0%
GCTTCTAGTAAACGCGCTTC+TGG + chr3.1:59496293-59496312 None:intergenic 50.0%
GTGAAGTCTACGACGAGTCT+TGG + chr3.1:59496254-59496273 None:intergenic 50.0%
TCTACGACGAGTCTTGGTCT+TGG + chr3.1:59496248-59496267 None:intergenic 50.0%
TCTGGGTTAAAGCGACGGAT+GGG + chr3.1:59496338-59496357 None:intergenic 50.0%
TGAATTGGCCAAAGCAGCAG+GGG + chr3.1:59496208-59496227 None:intergenic 50.0%
TTCTGGGTTAAAGCGACGGA+TGG + chr3.1:59496339-59496358 None:intergenic 50.0%
! CAACCGGTGATTTTTCCAGG+TGG - chr3.1:59496536-59496555 MS.gene039947:CDS 50.0%
! GGGTTTCTGGGTTAAAGCGA+CGG + chr3.1:59496343-59496362 None:intergenic 50.0%
! GTGGTGGAGGTAGGTTACAA+AGG - chr3.1:59496924-59496943 MS.gene039947:CDS 50.0%
! TCGTCTCTTTGGCCTTTCCA+TGG - chr3.1:59496968-59496987 MS.gene039947:CDS 50.0%
! TTCTGGGGAAGGATCATGTG+CGG + chr3.1:59496276-59496295 None:intergenic 50.0%
! TTGATATGCCCCTGCTGCTT+TGG - chr3.1:59496197-59496216 MS.gene039947:CDS 50.0%
AAGAAGTTCCAGTGCGCCGT+CGG - chr3.1:59496390-59496409 MS.gene039947:CDS 55.0%
ATTGGTCCTTGTCGTCCACC+TGG + chr3.1:59496554-59496573 None:intergenic 55.0%
CCAACACCGTCCACGTACAT+GGG - chr3.1:59496463-59496482 MS.gene039947:CDS 55.0%
CGACAAGGACCAATTCCACG+CGG - chr3.1:59496560-59496579 MS.gene039947:CDS 55.0%
CTCCGATACCTGCCATGGAA+AGG + chr3.1:59496983-59497002 None:intergenic 55.0%
GAACTCTCCGATACCTGCCA+TGG + chr3.1:59496988-59497007 None:intergenic 55.0%
GATGGGTGGGTCAAGCATGA+TGG + chr3.1:59496321-59496340 None:intergenic 55.0%
GCATCAACTCCGCGTGGAAT+TGG + chr3.1:59496572-59496591 None:intergenic 55.0%
GCGCACTGGAACTTCTTGTG+TGG + chr3.1:59496387-59496406 None:intergenic 55.0%
GGCCTTTCCATGGCAGGTAT+CGG - chr3.1:59496978-59496997 MS.gene039947:CDS 55.0%
GGTGATGATCTCCTGTCCGA+CGG + chr3.1:59496409-59496428 None:intergenic 55.0%
GGTTAAAGCGACGGATGGGT+GGG + chr3.1:59496334-59496353 None:intergenic 55.0%
TCCAACACCGTCCACGTACA+TGG - chr3.1:59496462-59496481 MS.gene039947:CDS 55.0%
TCTCTTGCATCAACTCCGCG+TGG + chr3.1:59496578-59496597 None:intergenic 55.0%
! AGTAAACGCGCTTCTGGGGA+AGG + chr3.1:59496287-59496306 None:intergenic 55.0%
! CTCTTTGGCCTTTCCATGGC+AGG - chr3.1:59496972-59496991 MS.gene039947:CDS 55.0%
! GAGTGTGGTGATGAAGGTGG+TGG - chr3.1:59496905-59496924 MS.gene039947:CDS 55.0%
! GCAGGGGCATATCAAGTCAG+AGG + chr3.1:59496192-59496211 None:intergenic 55.0%
! TGTGGTGATGAAGGTGGTGG+TGG - chr3.1:59496908-59496927 MS.gene039947:CDS 55.0%
!! ATGAAGGTGGTGGTGGAGGT+AGG - chr3.1:59496915-59496934 MS.gene039947:CDS 55.0%
CCCATGTACGTGGACGGTGT+TGG + chr3.1:59496466-59496485 None:intergenic 60.0%
GGGTTAAAGCGACGGATGGG+TGG + chr3.1:59496335-59496354 None:intergenic 60.0%
! ACGTGGACGGTGTTGGATCC+CGG + chr3.1:59496459-59496478 None:intergenic 60.0%
! ATACCTCTTTCCGGCACCGG+TGG + chr3.1:59496668-59496687 None:intergenic 60.0%
! GGCGTCGGGTTTGGGTTTCT+GGG + chr3.1:59496355-59496374 None:intergenic 60.0%
!! ATGACGTGGGCGTCGGGTTT+GGG + chr3.1:59496363-59496382 None:intergenic 60.0%
!! GGTGATGAAGGTGGTGGTGG+AGG - chr3.1:59496911-59496930 MS.gene039947:CDS 60.0%
ATGGTGCAATGCGGACGGCG+CGG + chr3.1:59496163-59496182 None:intergenic 65.0%
GTGTGGCATGACGTGGGCGT+CGG + chr3.1:59496370-59496389 None:intergenic 65.0%
TGTGGCATGACGTGGGCGTC+GGG + chr3.1:59496369-59496388 None:intergenic 65.0%
! CGGTGTTGGATCCCGGGTTC+AGG + chr3.1:59496452-59496471 None:intergenic 65.0%
! CGTGGACGGTGTTGGATCCC+GGG + chr3.1:59496458-59496477 None:intergenic 65.0%
!! CATGACGTGGGCGTCGGGTT+TGG + chr3.1:59496364-59496383 None:intergenic 65.0%
!! GGGCGTCGGGTTTGGGTTTC+TGG + chr3.1:59496356-59496375 None:intergenic 65.0%
GTTCCAGTGCGCCGTCGGAC+AGG - chr3.1:59496395-59496414 MS.gene039947:CDS 70.0%
TCTCCTGTCCGACGGCGCAC+TGG + chr3.1:59496401-59496420 None:intergenic 70.0%
TGACCGGCAGGGTCCACCAC+CGG - chr3.1:59496649-59496668 MS.gene039947:CDS 70.0%
TGCGGACGGCGCGGTTGCAT+TGG + chr3.1:59496154-59496173 None:intergenic 70.0%
! CCACCACCGGTGCCGGAAAG+AGG - chr3.1:59496662-59496681 MS.gene039947:CDS 70.0%
!! CCTCTTTCCGGCACCGGTGG+TGG + chr3.1:59496665-59496684 None:intergenic 70.0%
GCAGGGTCCACCACCGGTGC+CGG - chr3.1:59496655-59496674 MS.gene039947:CDS 75.0%
!! GCACCGGTGGTGGACCCTGC+CGG + chr3.1:59496655-59496674 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 59496083 59497060 59496083 ID=MS.gene039947
chr3.1 mRNA 59496083 59497060 59496083 ID=MS.gene039947.t1;Parent=MS.gene039947
chr3.1 exon 59496083 59497060 59496083 ID=MS.gene039947.t1.exon1;Parent=MS.gene039947.t1
chr3.1 CDS 59496083 59497060 59496083 ID=cds.MS.gene039947.t1;Parent=MS.gene039947.t1
Gene Sequence

>MS.gene039947

ATGTCTTTGAGTCCTCCAAGAGAGAGAATAAACAACCAACGTAGAAACTTTCAACTCTACTATTGCTTCCAATGCAACCGCGCCGTCCGCATTGCACCATATAACTCCTCTGACTTGATATGCCCCTGCTGCTTTGGCCAATTCATATGTGAAATAAACATTCCAAGACCAAGACTCGTCGTAGACTTCACCGCACATGATCCTTCCCCAGAAGCGCGTTTACTAGAAGCACTTTCCATCATGCTTGACCCACCCATCCGTCGCTTTAACCCAGAAACCCAAACCCGACGCCCACGTCATGCCACACAAGAAGTTCCAGTGCGCCGTCGGACAGGAGATCATCACCCAACCCAAACACAAACTGAACCTGAACCCGGGATCCAACACCGTCCACGTACATGGGTCATTCTACAACCTGTGGATCCTTCTTCCAATTCCGATTCAAACACGTTTCAACCGGTGATTTTTCCAGGTGGACGACAAGGACCAATTCCACGCGGAGTTGATGCAAGAGACTATTTTTTTGGACCGGGTTTTAACGAACTAATAGACCAAATAACAGAAAATGACCGGCAGGGTCCACCACCGGTGCCGGAAAGAGGTATAAACGCAATTCCAACAGTGAAAATCGAAAGCAAAAATCTGAAAGAGAATTCTCATTGTCCTGTTTGTCAAGAAGAGTTTGAAATTGGTGGTGAAGCGAGGGAGCTTCCATGTAAACATATATATCACTCTGATTGTATTGTTCCATGGCTTAGACTTCACAATTCTTGTCCAATTTGTCGTCAAGAGATTCCTTGTTCTTCTTCTGATGATGAAAATGAGTGTGGTGATGAAGGTGGTGGTGGAGGTAGGTTACAAAGGTGTTTGAGGTGGACAAGAATTTCGTCTCTTTGGCCTTTCCATGGCAGGTATCGGAGAGTTCATCCTCAAAGAGACAATGGTTCTGGTTCTGCTTCAAGAATAAGGGGTGATTGA
Protein sequence

>MS.gene039947.t1

MSLSPPRERINNQRRNFQLYYCFQCNRAVRIAPYNSSDLICPCCFGQFICEINIPRPRLVVDFTAHDPSPEARLLEALSIMLDPPIRRFNPETQTRRPRHATQEVPVRRRTGDHHPTQTQTEPEPGIQHRPRTWVILQPVDPSSNSDSNTFQPVIFPGGRQGPIPRGVDARDYFFGPGFNELIDQITENDRQGPPPVPERGINAIPTVKIESKNLKENSHCPVCQEEFEIGGEARELPCKHIYHSDCIVPWLRLHNSCPICRQEIPCSSSDDENECGDEGGGGGRLQRCLRWTRISSLWPFHGRYRRVHPQRDNGSGSASRIRGD