AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene039952

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene039952.t1 MTR_3g072560 96.491 399 14 0 1 399 1 399 0.0 791
MS.gene039952.t1 MTR_3g072530 64.957 351 117 4 16 360 12 362 4.17e-166 470
MS.gene039952.t1 MTR_1g030600 52.865 384 166 6 14 390 14 389 2.64e-130 380
MS.gene039952.t1 MTR_3g072520 52.893 363 158 5 16 366 7 368 7.42e-126 369
MS.gene039952.t1 MTR_1g068630 51.039 337 157 4 16 350 13 343 5.15e-120 353
MS.gene039952.t1 MTR_1g030580 50.954 367 165 5 18 379 16 372 1.44e-119 352
MS.gene039952.t1 MTR_3g072500 47.200 375 188 4 13 380 15 386 2.10e-118 350
MS.gene039952.t1 MTR_0096s0100 49.435 354 163 5 18 366 18 360 8.20e-118 347
MS.gene039952.t1 MTR_7g100050 48.138 349 172 4 14 353 9 357 7.66e-117 345
MS.gene039952.t1 MTR_3g072530 56.491 285 86 4 16 262 12 296 1.46e-107 319
MS.gene039952.t1 MTR_8g041390 47.941 340 167 4 14 343 9 348 2.14e-106 319
MS.gene039952.t1 MTR_3g012420 46.608 339 172 3 14 343 13 351 1.67e-104 314
MS.gene039952.t1 MTR_3g072500 45.804 286 145 4 102 380 1 283 8.01e-83 255
MS.gene039952.t1 MTR_1g074070 38.872 337 204 2 14 349 12 347 2.65e-80 251
MS.gene039952.t1 MTR_1g074120 38.000 350 215 2 4 352 2 350 3.25e-80 251
MS.gene039952.t1 MTR_1g074160 38.988 336 195 2 18 343 13 348 8.69e-79 247
MS.gene039952.t1 MTR_1g051120 38.028 355 214 3 4 352 2 356 2.12e-78 246
MS.gene039952.t1 MTR_1g073990 41.104 326 189 3 18 341 16 340 7.02e-78 244
MS.gene039952.t1 MTR_1g070175 35.150 367 217 5 5 361 3 358 8.10e-77 242
MS.gene039952.t1 MTR_3g072500 46.988 249 128 2 18 262 20 268 1.59e-76 239
MS.gene039952.t1 MTR_1g074020 38.769 325 197 2 18 341 13 336 2.99e-76 240
MS.gene039952.t1 MTR_4g094340 36.919 344 211 2 18 356 9 351 9.69e-72 229
MS.gene039952.t1 MTR_4g094340 36.919 344 211 2 18 356 27 369 1.46e-71 229
MS.gene039952.t1 MTR_3g112480 38.788 330 181 2 23 334 25 351 2.37e-71 229
MS.gene039952.t1 MTR_2g007960 35.196 358 221 3 18 365 12 368 5.11e-70 226
MS.gene039952.t1 MTR_2g007990 34.465 383 238 4 18 392 15 392 1.22e-69 224
MS.gene039952.t1 MTR_1g023180 36.648 352 195 3 20 346 23 371 1.26e-69 225
MS.gene039952.t1 MTR_6g081840 38.372 344 204 4 27 362 19 362 2.39e-68 220
MS.gene039952.t1 MTR_6g036450 34.783 322 204 3 18 334 16 336 1.57e-67 218
MS.gene039952.t1 MTR_2g027030 36.494 348 203 4 18 350 12 356 1.74e-67 218
MS.gene039952.t1 MTR_5g021160 36.280 328 205 1 16 339 5 332 3.42e-67 217
MS.gene039952.t1 MTR_2g007970 34.367 387 237 5 18 392 12 393 4.37e-67 218
MS.gene039952.t1 MTR_3g095460 34.043 329 212 1 18 341 5 333 4.26e-66 214
MS.gene039952.t1 MTR_3g095420 31.694 366 231 6 19 376 8 362 2.63e-65 213
MS.gene039952.t1 MTR_2g016710 33.799 358 227 4 18 374 8 356 4.37e-64 209
MS.gene039952.t1 MTR_2g007260 34.439 392 237 6 18 392 14 402 5.85e-64 210
MS.gene039952.t1 MTR_8g092650 35.465 344 208 4 18 353 5 342 9.02e-64 208
MS.gene039952.t1 MTR_1g038560 34.524 336 215 3 18 350 3 336 9.77e-63 205
MS.gene039952.t1 MTR_4g094342 34.483 319 202 2 18 329 13 331 4.97e-60 199
MS.gene039952.t1 MTR_3g090550 33.846 325 201 4 35 356 23 336 8.35e-60 197
MS.gene039952.t1 MTR_1g052205 44.400 250 116 8 131 375 13 244 1.59e-59 194
MS.gene039952.t1 MTR_2g102340 31.481 378 239 6 12 380 5 371 2.21e-59 197
MS.gene039952.t1 MTR_3g095450 33.846 325 205 4 19 334 6 329 6.50e-59 196
MS.gene039952.t1 MTR_4g106720 32.448 339 213 5 19 346 12 345 2.00e-58 194
MS.gene039952.t1 MTR_4g094340 35.439 285 179 1 77 356 1 285 9.69e-58 190
MS.gene039952.t1 MTR_1g114210 32.174 345 217 4 17 352 10 346 1.42e-57 192
MS.gene039952.t1 MTR_4g094352 35.833 360 212 6 18 363 12 366 4.34e-57 192
MS.gene039952.t1 MTR_8g006010 34.048 373 230 5 19 386 11 372 8.18e-57 191
MS.gene039952.t1 MTR_7g111830 31.325 332 219 2 19 341 8 339 1.05e-56 191
MS.gene039952.t1 MTR_3g072500 47.000 200 101 3 18 212 20 219 1.48e-56 185
MS.gene039952.t1 MTR_5g034980 35.647 317 196 4 23 334 12 325 1.74e-56 189
MS.gene039952.t1 MTR_5g034990 33.923 339 217 4 19 356 15 347 2.69e-56 189
MS.gene039952.t1 MTR_0103s0090 36.392 316 193 5 44 356 37 347 7.25e-56 188
MS.gene039952.t1 MTR_5g034910 34.462 325 208 4 23 343 12 335 1.03e-55 187
MS.gene039952.t1 MTR_4g094362 32.143 336 220 2 16 345 12 345 1.94e-55 187
MS.gene039952.t1 MTR_4g094360 32.609 368 233 6 16 368 12 379 2.42e-55 187
MS.gene039952.t1 MTR_2g065550 32.493 357 228 3 19 362 11 367 2.16e-54 184
MS.gene039952.t1 MTR_3g112480 37.234 282 156 2 71 334 18 296 2.27e-54 183
MS.gene039952.t1 MTR_8g006120 34.911 338 216 3 19 352 11 348 1.15e-52 180
MS.gene039952.t1 MTR_5g034930 37.048 332 199 8 22 346 10 338 1.97e-52 178
MS.gene039952.t1 MTR_3g019050 28.788 396 268 7 1 390 1 388 4.44e-52 179
MS.gene039952.t1 MTR_4g129650 30.952 378 235 8 19 388 9 368 8.23e-52 177
MS.gene039952.t1 MTR_2g016710 34.459 296 192 2 18 312 8 302 4.65e-51 174
MS.gene039952.t1 MTR_3g095440 31.790 324 213 3 19 334 6 329 1.38e-50 174
MS.gene039952.t1 MTR_5g069040 27.318 399 274 4 1 390 1 392 5.95e-50 173
MS.gene039952.t1 MTR_1g074160 36.327 245 155 1 18 261 13 257 8.51e-50 169
MS.gene039952.t1 MTR_1g014510 32.827 329 210 5 19 339 12 337 9.25e-50 174
MS.gene039952.t1 MTR_5g068790 27.704 379 262 4 1 374 1 372 1.59e-49 172
MS.gene039952.t1 MTR_6g007743 34.667 300 189 5 43 339 37 332 2.31e-49 171
MS.gene039952.t1 MTR_0103s0090 36.187 257 160 2 101 356 3 256 3.93e-48 165
MS.gene039952.t1 MTR_1g030400 27.348 362 226 5 44 395 33 367 2.46e-47 166
MS.gene039952.t1 MTR_5g089390 28.228 333 231 3 23 354 19 344 8.55e-47 164
MS.gene039952.t1 MTR_5g025340 31.737 334 210 3 18 334 10 342 1.71e-46 164
MS.gene039952.t1 MTR_6g007750 32.249 338 221 5 7 339 1 335 3.47e-46 162
MS.gene039952.t1 MTR_6g007747 36.246 309 191 5 43 349 37 341 3.69e-46 162
MS.gene039952.t1 MTR_8g092650 36.327 245 142 4 117 353 26 264 6.10e-46 159
MS.gene039952.t1 MTR_5g021160 35.060 251 159 1 16 262 5 255 1.43e-45 158
MS.gene039952.t1 MTR_5g025290 29.738 343 223 3 18 343 11 352 7.21e-45 159
MS.gene039952.t1 MTR_5g025290 29.738 343 223 3 18 343 39 380 8.15e-45 160
MS.gene039952.t1 MTR_5g021160 33.871 248 160 1 96 339 2 249 1.60e-44 155
MS.gene039952.t1 MTR_8g006090 32.733 333 221 3 19 348 12 344 2.20e-44 157
MS.gene039952.t1 MTR_5g025370 31.454 337 209 5 18 334 10 344 3.73e-44 157
MS.gene039952.t1 MTR_4g094360 31.788 302 201 3 16 312 12 313 3.02e-43 153
MS.gene039952.t1 MTR_6g007760 30.435 299 204 3 19 314 12 309 5.26e-43 152
MS.gene039952.t1 MTR_5g034970 34.069 317 188 5 23 334 12 312 1.16e-42 152
MS.gene039952.t1 MTR_4g094340 34.400 250 158 2 18 262 9 257 5.78e-42 149
MS.gene039952.t1 MTR_4g094360 32.971 276 170 6 108 368 57 332 6.30e-42 151
MS.gene039952.t1 MTR_8g072350 28.000 375 249 6 18 375 9 379 7.16e-42 151
MS.gene039952.t1 MTR_6g007740 32.641 337 218 6 7 339 1 332 9.78e-42 153
MS.gene039952.t1 MTR_4g094340 34.400 250 158 2 18 262 27 275 1.03e-41 148
MS.gene039952.t1 MTR_6g007753 36.170 282 173 5 62 339 338 616 1.09e-41 155
MS.gene039952.t1 MTR_6g007753 35.377 212 134 2 129 339 83 292 3.89e-29 119
MS.gene039952.t1 MTR_8g006050 30.514 331 209 6 49 374 25 339 6.54e-41 148
MS.gene039952.t1 MTR_5g025400 29.248 359 228 5 18 351 11 368 8.13e-41 149
MS.gene039952.t1 MTR_6g007757 34.024 338 213 7 7 339 1 333 1.18e-40 148
MS.gene039952.t1 MTR_5g025330 29.341 334 218 3 18 334 9 341 5.60e-39 147
MS.gene039952.t1 MTR_3g112480 34.802 227 127 2 126 334 1 224 4.16e-37 135
MS.gene039952.t1 MTR_4g129650 32.365 241 154 4 117 353 3 238 5.08e-37 135
MS.gene039952.t1 MTR_5g034980 32.639 288 168 5 23 287 12 296 3.28e-36 134
MS.gene039952.t1 MTR_1g051120 34.286 210 136 1 4 211 2 211 4.24e-35 130
MS.gene039952.t1 MTR_1g068720 47.826 138 69 3 207 341 93 230 9.80e-35 129
MS.gene039952.t1 MTR_1g068720 39.024 82 50 0 13 94 9 90 2.56e-12 66.6
MS.gene039952.t1 MTR_1g051120 34.135 208 135 1 4 209 2 209 1.43e-34 127
MS.gene039952.t1 MTR_8g006090 32.323 297 198 3 19 312 12 308 9.98e-34 128
MS.gene039952.t1 MTR_8g006090 32.812 256 170 2 95 348 9 264 1.39e-33 127
MS.gene039952.t1 MTR_4g094340 36.683 199 120 2 18 211 27 224 3.57e-32 121
MS.gene039952.t1 MTR_4g100840 28.488 344 210 11 23 343 19 349 6.14e-32 124
MS.gene039952.t1 MTR_3g095440 29.084 251 170 3 19 261 6 256 7.29e-32 121
MS.gene039952.t1 MTR_5g012650 30.564 337 205 8 23 339 13 340 9.34e-32 123
MS.gene039952.t1 MTR_2g102340 29.688 256 173 4 12 262 31 284 5.13e-30 118
MS.gene039952.t1 MTR_6g007757 31.765 255 164 7 7 256 1 250 5.08e-25 103
MS.gene039952.t1 MTR_4g094342 30.500 200 132 2 18 210 13 212 8.58e-25 102
MS.gene039952.t1 MTR_6g007470 45.833 96 51 1 191 285 89 184 6.99e-21 90.9
MS.gene039952.t1 MTR_8g006090 32.340 235 156 3 19 250 12 246 1.45e-20 91.7
MS.gene039952.t1 MTR_8g076800 37.097 124 70 2 180 296 140 262 4.89e-20 89.7
MS.gene039952.t1 MTR_1g014790 33.871 124 76 2 91 209 36 158 3.65e-16 77.0
MS.gene039952.t1 MTR_4g094348 36.923 130 69 4 103 221 7 134 2.80e-15 73.9
MS.gene039952.t1 MTR_1g092700 43.210 81 37 2 278 352 1 78 2.96e-14 67.8
MS.gene039952.t1 MTR_3g093450 28.191 188 88 5 159 337 33 182 2.87e-13 68.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene039952.t1 AT4G08290 56.077 362 146 2 18 366 12 373 8.10e-144 414
MS.gene039952.t1 AT2G37460 47.425 369 191 2 16 383 12 378 2.39e-121 357
MS.gene039952.t1 AT1G21890 48.806 377 171 4 18 380 10 378 9.99e-117 345
MS.gene039952.t1 AT2G39510 49.852 337 161 3 18 346 7 343 2.17e-113 336
MS.gene039952.t1 AT5G07050 44.000 400 203 6 5 384 4 402 5.49e-113 336
MS.gene039952.t1 AT4G08300 48.457 324 158 2 18 334 10 331 6.67e-109 325
MS.gene039952.t1 AT1G44800 46.991 349 169 3 18 359 10 349 1.40e-108 324
MS.gene039952.t1 AT2G40900 44.286 350 192 1 16 365 8 354 7.14e-103 310
MS.gene039952.t1 AT4G08290 58.635 249 99 1 18 262 12 260 5.01e-102 304
MS.gene039952.t1 AT1G21890 51.634 306 137 1 18 312 10 315 4.60e-101 304
MS.gene039952.t1 AT2G37450 45.588 340 161 4 16 353 6 323 2.68e-94 286
MS.gene039952.t1 AT3G56620 43.478 322 168 2 16 331 8 321 8.28e-91 279
MS.gene039952.t1 AT5G13670 42.202 327 182 5 14 334 3 328 1.83e-82 257
MS.gene039952.t1 AT2G37450 48.413 252 127 3 104 353 1 251 1.60e-73 230
MS.gene039952.t1 AT3G18200 38.906 329 192 5 23 345 39 364 1.90e-72 231
MS.gene039952.t1 AT2G37450 40.000 340 141 5 16 353 6 284 2.72e-71 226
MS.gene039952.t1 AT5G64700 37.353 340 197 4 16 342 5 341 9.81e-71 226
MS.gene039952.t1 AT1G75500 35.244 349 215 3 20 357 21 369 1.36e-70 227
MS.gene039952.t1 AT1G75500 35.244 349 215 3 20 357 21 369 1.36e-70 227
MS.gene039952.t1 AT3G53210 36.728 324 198 2 16 334 7 328 1.43e-65 213
MS.gene039952.t1 AT3G30340 34.146 328 211 2 18 341 10 336 5.42e-63 206
MS.gene039952.t1 AT1G09380 32.022 356 226 3 19 358 8 363 4.11e-62 204
MS.gene039952.t1 AT4G30420 32.292 384 245 5 18 394 8 383 2.44e-58 195
MS.gene039952.t1 AT4G30420 32.190 379 242 5 23 394 3 373 6.68e-57 191
MS.gene039952.t1 AT1G68170 34.521 365 230 3 7 365 1 362 2.54e-55 186
MS.gene039952.t1 AT1G68170 35.530 349 216 3 23 365 7 352 4.35e-55 186
MS.gene039952.t1 AT1G25270 32.578 353 234 2 18 366 2 354 1.11e-54 184
MS.gene039952.t1 AT1G43650 33.918 342 218 3 13 349 1 339 2.12e-54 183
MS.gene039952.t1 AT5G40230 32.011 353 216 6 16 350 18 364 1.45e-53 182
MS.gene039952.t1 AT1G01070 32.845 341 224 3 19 355 16 355 4.33e-53 181
MS.gene039952.t1 AT4G28040 29.730 370 237 6 18 384 7 356 5.07e-52 178
MS.gene039952.t1 AT4G28040 29.730 370 237 6 18 384 7 356 5.07e-52 178
MS.gene039952.t1 AT4G28040 29.730 370 237 6 18 384 7 356 5.07e-52 178
MS.gene039952.t1 AT4G28040 29.730 370 237 6 18 384 7 356 5.07e-52 178
MS.gene039952.t1 AT4G28040 29.730 370 237 6 18 384 7 356 5.07e-52 178
MS.gene039952.t1 AT4G01440 30.581 327 222 3 21 344 14 338 1.24e-50 174
MS.gene039952.t1 AT4G01430 30.595 353 235 4 19 363 9 359 1.50e-50 174
MS.gene039952.t1 AT5G40240 31.193 327 214 4 16 334 17 340 2.90e-48 168
MS.gene039952.t1 AT5G40240 31.193 327 214 4 16 334 17 340 2.90e-48 168
MS.gene039952.t1 AT5G40240 31.193 327 214 4 16 334 31 354 4.95e-48 168
MS.gene039952.t1 AT1G70260 29.060 351 235 4 35 375 28 374 1.83e-47 166
MS.gene039952.t1 AT1G11450 30.882 340 224 5 19 352 16 350 2.37e-47 165
MS.gene039952.t1 AT5G64700 36.434 258 149 3 16 261 5 259 3.50e-47 162
MS.gene039952.t1 AT5G40210 33.228 316 189 7 23 334 17 314 6.17e-47 164
MS.gene039952.t1 AT1G01070 33.220 295 192 3 65 355 15 308 1.89e-45 159
MS.gene039952.t1 AT3G53210 35.135 259 160 3 81 334 16 271 2.64e-45 159
MS.gene039952.t1 AT3G18200 37.975 237 138 5 115 345 1 234 2.91e-45 157
MS.gene039952.t1 AT1G11450 32.026 306 197 5 53 352 6 306 7.28e-45 157
MS.gene039952.t1 AT3G53210 34.921 252 157 2 16 262 7 256 1.05e-44 155
MS.gene039952.t1 AT3G28050 31.193 327 218 5 43 365 36 359 3.03e-44 157
MS.gene039952.t1 AT1G11460 30.530 321 216 3 19 334 16 334 1.25e-43 155
MS.gene039952.t1 AT4G01440 30.272 294 201 2 21 312 14 305 1.41e-43 154
MS.gene039952.t1 AT1G11450 31.683 303 196 5 56 352 2 299 3.41e-43 153
MS.gene039952.t1 AT5G45370 29.565 345 206 5 31 364 32 350 4.21e-42 151
MS.gene039952.t1 AT4G15540 30.029 343 223 5 16 350 14 347 5.44e-42 151
MS.gene039952.t1 AT4G15540 30.029 343 223 5 16 350 14 347 5.44e-42 151
MS.gene039952.t1 AT5G45370 29.345 351 223 5 31 364 32 374 5.25e-41 149
MS.gene039952.t1 AT5G45370 29.345 351 223 5 31 364 32 374 5.25e-41 149
MS.gene039952.t1 AT3G28100 30.952 336 216 8 23 349 18 346 1.62e-40 147
MS.gene039952.t1 AT4G01430 30.795 302 199 4 19 312 9 308 1.85e-40 146
MS.gene039952.t1 AT3G28080 32.653 294 180 8 68 351 62 347 2.16e-40 147
MS.gene039952.t1 AT4G01450 30.816 331 226 2 38 367 29 357 5.67e-40 146
MS.gene039952.t1 AT3G28130 31.765 340 213 10 30 361 25 353 6.26e-40 145
MS.gene039952.t1 AT3G45870 29.878 328 210 4 18 329 11 334 2.23e-39 145
MS.gene039952.t1 AT3G28130 32.836 268 164 7 101 361 9 267 2.82e-39 142
MS.gene039952.t1 AT3G28130 32.836 268 164 7 101 361 9 267 2.82e-39 142
MS.gene039952.t1 AT3G30340 31.418 261 172 3 18 274 10 267 5.88e-39 141
MS.gene039952.t1 AT3G28080 32.946 258 158 6 102 351 8 258 2.18e-38 139
MS.gene039952.t1 AT3G28080 32.946 258 158 6 102 351 8 258 2.18e-38 139
MS.gene039952.t1 AT3G28080 32.946 258 158 6 102 351 8 258 2.18e-38 139
MS.gene039952.t1 AT3G28080 32.946 258 158 6 102 351 8 258 2.18e-38 139
MS.gene039952.t1 AT1G60050 27.841 352 240 4 19 356 13 364 3.48e-38 141
MS.gene039952.t1 AT3G28070 33.198 247 151 6 101 339 7 247 4.24e-38 138
MS.gene039952.t1 AT3G28070 32.959 267 164 7 81 339 80 339 7.58e-38 140
MS.gene039952.t1 AT5G47470 29.080 337 214 6 23 343 34 361 1.15e-37 140
MS.gene039952.t1 AT3G28080 32.616 279 172 7 81 351 69 339 1.27e-37 139
MS.gene039952.t1 AT5G47470 29.080 337 214 6 23 343 62 389 1.58e-37 140
MS.gene039952.t1 AT5G47470 29.052 327 214 6 23 340 62 379 5.55e-37 138
MS.gene039952.t1 AT1G11450 29.667 300 201 4 19 312 16 311 9.37e-37 136
MS.gene039952.t1 AT4G01450 28.399 331 216 3 38 367 29 339 2.85e-36 135
MS.gene039952.t1 AT4G01440 32.174 230 152 2 21 248 14 241 1.83e-35 131
MS.gene039952.t1 AT4G01450 33.649 211 138 1 38 248 29 237 2.27e-35 131
MS.gene039952.t1 AT1G11450 31.679 262 168 5 97 352 2 258 2.74e-35 130
MS.gene039952.t1 AT4G19185 29.573 328 209 3 26 334 28 352 7.38e-35 133
MS.gene039952.t1 AT3G45870 28.296 311 203 3 18 312 11 317 1.40e-32 125
MS.gene039952.t1 AT4G01450 34.197 193 125 1 38 230 29 219 1.31e-30 118
MS.gene039952.t1 AT1G43650 33.906 233 153 1 18 250 6 237 1.58e-30 118
MS.gene039952.t1 AT4G24980 26.844 339 168 7 35 365 3 269 9.06e-30 116
MS.gene039952.t1 AT4G01440 28.509 228 160 2 120 344 3 230 4.92e-29 114
MS.gene039952.t1 AT4G01440 28.509 228 160 2 120 344 3 230 4.92e-29 114
MS.gene039952.t1 AT3G28070 31.250 240 152 6 81 312 80 314 1.79e-28 114
MS.gene039952.t1 AT3G28130 30.802 237 148 7 132 361 1 228 2.50e-27 108
MS.gene039952.t1 AT3G28080 30.263 228 144 6 132 351 1 221 1.79e-26 106
MS.gene039952.t1 AT4G19185 28.295 258 163 3 96 334 20 274 1.97e-26 108
MS.gene039952.t1 AT3G28080 30.375 293 134 9 68 351 62 293 8.89e-26 106
MS.gene039952.t1 AT3G45870 28.514 249 159 2 18 250 11 256 1.22e-25 105
MS.gene039952.t1 AT4G16620 25.291 344 246 5 25 363 18 355 1.50e-25 106
MS.gene039952.t1 AT3G28070 30.556 216 136 6 132 339 1 210 2.59e-25 103
MS.gene039952.t1 AT5G45370 27.143 280 179 5 102 364 1 272 2.69e-25 104
MS.gene039952.t1 AT5G45370 27.143 280 179 5 102 364 1 272 2.69e-25 104
MS.gene039952.t1 AT4G01430 28.829 222 153 2 147 363 1 222 8.00e-24 99.0
MS.gene039952.t1 AT3G28080 30.350 257 112 7 102 351 8 204 1.54e-23 98.2
MS.gene039952.t1 AT3G28100 30.453 243 156 6 23 256 18 256 1.86e-22 96.3
MS.gene039952.t1 AT3G45870 28.837 215 133 4 131 329 49 259 9.15e-20 89.7
MS.gene039952.t1 AT4G16620 26.515 264 184 4 104 363 1 258 1.98e-19 87.8
MS.gene039952.t1 AT4G16620 26.515 264 184 4 104 363 1 258 1.98e-19 87.8
MS.gene039952.t1 AT3G28130 29.362 235 154 6 30 256 25 255 2.10e-18 84.7
MS.gene039952.t1 AT3G28100 36.111 144 90 2 23 165 18 160 3.60e-18 84.0
MS.gene039952.t1 AT5G45370 26.104 249 159 5 133 364 74 314 7.24e-17 81.3
MS.gene039952.t1 AT4G16620 26.168 214 157 1 25 237 18 231 2.36e-16 79.0
MS.gene039952.t1 AT3G28130 36.496 137 84 3 30 165 25 159 1.50e-14 72.8
MS.gene039952.t1 AT3G45870 26.263 198 126 3 131 312 49 242 2.20e-13 70.1
MS.gene039952.t1 AT3G45870 26.263 198 126 3 131 312 49 242 2.20e-13 70.1
MS.gene039952.t1 AT3G45870 29.496 139 97 1 191 329 46 183 1.42e-12 67.4

Find 104 sgRNAs with CRISPR-Local

Find 191 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACAGCAATAATATCAATTT+TGG 0.048499 3.1:+59450490 None:intergenic
TGATATTATTGCTGTAAATT+TGG 0.125297 3.1:-59450483 MS.gene039952:CDS
GGGCCATTGGCTGGGATTAT+AGG 0.130460 3.1:-59451044 MS.gene039952:CDS
GGATCATCTATTGCAGTAAT+TGG 0.178775 3.1:+59450512 None:intergenic
TTAATGATTGGCCTTCAATT+TGG 0.244378 3.1:-59453581 MS.gene039952:CDS
AATGGTTGATGATGGTAATT+TGG 0.265083 3.1:+59450556 None:intergenic
TGCTTCTTTCTCCAATTTGT+TGG 0.276722 3.1:+59450424 None:intergenic
TGGTGCTCTTTATATACTAA+TGG 0.277546 3.1:-59451381 MS.gene039952:CDS
CATGATCATCGTTGCTTGTT+TGG 0.277709 3.1:-59450817 MS.gene039952:CDS
GTCTGATTCTGAATAGTCTT+TGG 0.279240 3.1:+59450580 None:intergenic
GGCTCCACTATTTCATCCTT+TGG 0.289797 3.1:+59450446 None:intergenic
CCCTATCTTCCTACAAATAA+TGG 0.307326 3.1:-59453196 MS.gene039952:CDS
TAACCAAAGCTTCACTTACT+TGG 0.316119 3.1:-59452971 MS.gene039952:CDS
TTCCCCACACCACTGTATAA+AGG 0.337111 3.1:+59450606 None:intergenic
GGCCTTCAATTTGGTATGGC+TGG 0.339650 3.1:-59453572 MS.gene039952:CDS
CACAAGCTTGGGCCATTGGC+TGG 0.341159 3.1:-59451053 MS.gene039952:CDS
AGGCCAATCATTAAGAGATA+TGG 0.350148 3.1:+59453590 None:intergenic
AATAGTGGAGCCCAACAAAT+TGG 0.353939 3.1:-59450435 MS.gene039952:CDS
TCAATTCATTGCAGTATCAT+AGG 0.356273 3.1:-59450650 MS.gene039952:intron
ACCATTATTTGTAGGAAGAT+AGG 0.358039 3.1:+59453195 None:intergenic
GCTTCTTTCTCCAATTTGTT+GGG 0.359425 3.1:+59450425 None:intergenic
TTGTTCTTGCAGTCATCTTC+CGG 0.370240 3.1:-59452885 MS.gene039952:intron
ATGGCTGGGAATTACATCTT+TGG 0.373494 3.1:-59453557 MS.gene039952:CDS
TCCCCAAGTAAGTGAAGCTT+TGG 0.375392 3.1:+59452968 None:intergenic
ATGATCATCGTTGCTTGTTT+GGG 0.382857 3.1:-59450816 MS.gene039952:CDS
ATTGGAACATTAGTAACCTT+TGG 0.389187 3.1:-59451512 MS.gene039952:CDS
CGAAGTCAAGCCAAAGTGAT+TGG 0.398988 3.1:-59451530 MS.gene039952:CDS
TTGCTTGTGCTCCTCCCGCC+AGG 0.399077 3.1:+59451106 None:intergenic
ATATAGGGAATAGTTAGTTC+AGG 0.402881 3.1:-59450915 MS.gene039952:intron
AACCAAAGCTTCACTTACTT+GGG 0.409335 3.1:-59452970 MS.gene039952:CDS
CTTCCTACAAATAATGGTGC+TGG 0.415319 3.1:-59453190 MS.gene039952:CDS
GGTGCTCTTTATATACTAAT+GGG 0.415428 3.1:-59451380 MS.gene039952:CDS
AAGATAGGGAGTGTCATCTT+TGG 0.425008 3.1:+59453210 None:intergenic
TCCACTATTTCATCCTTTGG+TGG 0.427193 3.1:+59450449 None:intergenic
AAACCATATCTCTTAATGAT+TGG 0.433291 3.1:-59453593 MS.gene039952:CDS
GGAATTGCATACTATGTTCA+AGG 0.435329 3.1:-59450894 MS.gene039952:CDS
CTTTGGTGGTGCATTGCTAA+TGG 0.441592 3.1:-59451495 MS.gene039952:CDS
GTTGCCAATGATAGCTCTGC+TGG 0.442544 3.1:+59451138 None:intergenic
CATTCACAAGCTTGGGCCAT+TGG 0.445558 3.1:-59451057 MS.gene039952:CDS
ATCCCAGCACCATTATTTGT+AGG 0.447578 3.1:+59453187 None:intergenic
TATAAAGAGCACCAGCAGTT+TGG 0.451662 3.1:+59451390 None:intergenic
TTTCATCCTTTGGTGGTGGT+TGG 0.454348 3.1:+59450456 None:intergenic
CCGAACGTCATTCACAAGCT+TGG 0.456820 3.1:-59451065 MS.gene039952:CDS
CGAACGTCATTCACAAGCTT+GGG 0.457577 3.1:-59451064 MS.gene039952:CDS
CCATTATTTGTAGGAAGATA+GGG 0.460921 3.1:+59453196 None:intergenic
TACTAATGTTCCAATCACTT+TGG 0.462446 3.1:+59451520 None:intergenic
GAATAGAAGTTTACCTTCCA+AGG 0.465030 3.1:+59450766 None:intergenic
GCCTTCAATTTGGTATGGCT+GGG 0.472061 3.1:-59453571 MS.gene039952:CDS
ACTATTTCATCCTTTGGTGG+TGG 0.474759 3.1:+59450452 None:intergenic
TTAGGAGAAAATCTCTACCT+TGG 0.484234 3.1:-59450783 MS.gene039952:CDS
TCCCAGCCATACCAAATTGA+AGG 0.485278 3.1:+59453570 None:intergenic
CCAAGCTTGTGAATGACGTT+CGG 0.489225 3.1:+59451065 None:intergenic
GCAAGAACAAAGGTGATAGA+AGG 0.493703 3.1:+59452898 None:intergenic
ACAAGCTTGGGCCATTGGCT+GGG 0.496572 3.1:-59451052 MS.gene039952:CDS
CGCAAGAGCGATCACGGCCA+TGG 0.501928 3.1:+59453478 None:intergenic
GAGAAAATCTCTACCTTGGA+AGG 0.506053 3.1:-59450779 MS.gene039952:intron
TTCTTAACCATGGGATGAGT+CGG 0.506248 3.1:-59453526 MS.gene039952:CDS
ACCACCAAAGGATGAAATAG+TGG 0.511596 3.1:-59450450 MS.gene039952:CDS
TTATATACTAATGGGTTGTG+TGG 0.516614 3.1:-59451372 MS.gene039952:CDS
GATTGGCCTTCAATTTGGTA+TGG 0.517880 3.1:-59453576 MS.gene039952:CDS
AGAGTTGTATGTAGCAATAA+CGG 0.519160 3.1:-59450402 MS.gene039952:CDS
GGAACATTAGTAACCTTTGG+TGG 0.522273 3.1:-59451509 MS.gene039952:CDS
GGTAAAGATATTCTTAACCA+TGG 0.524404 3.1:-59453536 MS.gene039952:CDS
AAAGAGCACCAGCAGTTTGG+TGG 0.526873 3.1:+59451393 None:intergenic
TGCATACTATGTTCAAGGGC+TGG 0.528687 3.1:-59450889 MS.gene039952:CDS
AGCAACTGCGGTGGCACTTG+TGG 0.528868 3.1:-59451088 MS.gene039952:CDS
GATTAACAAACCGTGTAAAG+AGG 0.530802 3.1:+59451012 None:intergenic
ATTGGCAACCTTGATATGCC+TGG 0.532302 3.1:-59451124 MS.gene039952:CDS
TCCTCTTCAATGGTTGATGA+TGG 0.533378 3.1:+59450548 None:intergenic
TTCCTACAAATAATGGTGCT+GGG 0.536786 3.1:-59453189 MS.gene039952:CDS
AAAGGGCGCAAGAGCGATCA+CGG 0.538018 3.1:+59453472 None:intergenic
TCTCATAACCACCAAACTGC+TGG 0.538585 3.1:-59451401 MS.gene039952:CDS
GTAAAGATATTCTTAACCAT+GGG 0.539542 3.1:-59453535 MS.gene039952:CDS
ATACCCAGCAGAGCTATCAT+TGG 0.541804 3.1:-59451142 MS.gene039952:CDS
AGGCCTTTATACAGTGGTGT+GGG 0.545500 3.1:-59450609 MS.gene039952:CDS
TCCTCCCGCCAGGCATATCA+AGG 0.553579 3.1:+59451116 None:intergenic
GAATGGAAAATGTTGAATCC+AGG 0.556275 3.1:+59451458 None:intergenic
CATTAGCAATGCACCACCAA+AGG 0.562707 3.1:+59451496 None:intergenic
ACCAAAGCTTCACTTACTTG+GGG 0.562713 3.1:-59452969 MS.gene039952:CDS
ATGGCAATTTACAAAGGACC+TGG 0.570452 3.1:-59451476 MS.gene039952:CDS
AGCAGTTTGGTGGTTATGAG+AGG 0.571414 3.1:+59451403 None:intergenic
CATCGTTTATCGCAATGCCA+TGG 0.574845 3.1:-59453495 MS.gene039952:CDS
GTTGGAGCGTCTTAAATGCA+AGG 0.579943 3.1:-59451558 MS.gene039952:CDS
GCAACCTTGATATGCCTGGC+GGG 0.580921 3.1:-59451120 MS.gene039952:CDS
ACCATCATCAACCATTGAAG+AGG 0.583628 3.1:-59450549 MS.gene039952:CDS
GGAAAACCAACCACCACCAA+AGG 0.591854 3.1:-59450462 MS.gene039952:CDS
GGAGCTGTTATCATTGCACT+AGG 0.597039 3.1:-59450629 MS.gene039952:CDS
GCTCTATGCTCCTCTTTACA+CGG 0.606205 3.1:-59451022 MS.gene039952:intron
TAGGCCTTTATACAGTGGTG+TGG 0.606513 3.1:-59450610 MS.gene039952:CDS
AACAAAGGTGATAGAAGGCA+CGG 0.609683 3.1:+59452903 None:intergenic
TTGCTAATGGCAATTTACAA+AGG 0.610174 3.1:-59451482 MS.gene039952:CDS
ACCTTGATATGCCTGGCGGG+AGG 0.628044 3.1:-59451117 MS.gene039952:CDS
TTGCCAATGATAGCTCTGCT+GGG 0.631474 3.1:+59451139 None:intergenic
GCAACGATGATCATGCAAAG+AGG 0.634093 3.1:+59450825 None:intergenic
GAATTGCATACTATGTTCAA+GGG 0.635972 3.1:-59450893 MS.gene039952:CDS
TGCACTAGGCCTTTATACAG+TGG 0.636343 3.1:-59450615 MS.gene039952:CDS
ACACGAACCGACTCATCCCA+TGG 0.641263 3.1:+59453519 None:intergenic
GAGCCTATAATCCCAGCCAA+TGG 0.644235 3.1:+59451041 None:intergenic
GAAGATGACTGCAAGAACAA+AGG 0.648455 3.1:+59452888 None:intergenic
GGCCTTTATACAGTGGTGTG+GGG 0.663595 3.1:-59450608 MS.gene039952:CDS
GGGAGGAGCACAAGCAACTG+CGG 0.664526 3.1:-59451100 MS.gene039952:CDS
AGGAGCACAAGCAACTGCGG+TGG 0.670180 3.1:-59451097 MS.gene039952:CDS
GGGCTGGTGATGCAAATGAG+AGG 0.671027 3.1:-59450873 MS.gene039952:CDS
GGCAACCTTGATATGCCTGG+CGG 0.688953 3.1:-59451121 MS.gene039952:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTTTAACTTATATATTAATA+CGG + chr3.1:59451602-59451621 None:intergenic 10.0%
!!! TAAATTCAATTTTTTTGTTT+AGG - chr3.1:59452461-59452480 MS.gene039952:intron 10.0%
!!! TTTAACTTATATATTAATAC+GGG + chr3.1:59451601-59451620 None:intergenic 10.0%
!! AGTAAAACTTATTAATAATC+AGG - chr3.1:59453322-59453341 MS.gene039952:intron 15.0%
!! AGTATTATTTAATTATCTGA+TGG + chr3.1:59451350-59451369 None:intergenic 15.0%
!! ATCAGTTTCTTAATTTATAT+AGG - chr3.1:59453110-59453129 MS.gene039952:intron 15.0%
!! TCAGTTTCTTAATTTATATA+GGG - chr3.1:59453111-59453130 MS.gene039952:intron 15.0%
!! TTAACTTATATATTAATACG+GGG + chr3.1:59451600-59451619 None:intergenic 15.0%
!!! AAAAAATAATAATTTTGGTG+TGG - chr3.1:59451819-59451838 MS.gene039952:intron 15.0%
!!! AAAGTTATTTAATGATTTTC+AGG - chr3.1:59450799-59450818 MS.gene039952:CDS 15.0%
!!! ACTTTTTTCTATAAATTTTG+TGG - chr3.1:59451963-59451982 MS.gene039952:intron 15.0%
!!! ATTATTTCTAAATTGTTTGT+GGG - chr3.1:59452846-59452865 MS.gene039952:intron 15.0%
!!! TATTATTTCTAAATTGTTTG+TGG - chr3.1:59452845-59452864 MS.gene039952:intron 15.0%
!!! TTATTTTAATGAGCTTATAA+CGG + chr3.1:59452366-59452385 None:intergenic 15.0%
!!! TTTTACTCATATATTAGTAA+AGG + chr3.1:59451662-59451681 None:intergenic 15.0%
!! AATTAACCATGTAATTAACA+AGG + chr3.1:59451033-59451052 None:intergenic 20.0%
!! ACATGAAATTTATGTAAACT+AGG - chr3.1:59452074-59452093 MS.gene039952:intron 20.0%
!! ATTATGTACATAAGTATTTG+CGG + chr3.1:59450901-59450920 None:intergenic 20.0%
!! GAAATAAGCTACATAATTTA+CGG - chr3.1:59452014-59452033 MS.gene039952:intron 20.0%
!! TGATATTATTGCTGTAAATT+TGG - chr3.1:59453558-59453577 MS.gene039952:CDS 20.0%
!!! ACAGCAATAATATCAATTTT+GGG + chr3.1:59453553-59453572 None:intergenic 20.0%
!!! TAATCTAGAAATCTGATTTT+TGG + chr3.1:59450407-59450426 None:intergenic 20.0%
!!! TACAGCAATAATATCAATTT+TGG + chr3.1:59453554-59453573 None:intergenic 20.0%
!!! TAGTTAAGTGTTTTAAGAAT+TGG + chr3.1:59452777-59452796 None:intergenic 20.0%
!!! TTCAATTTTTTTGTTTAGGT+TGG - chr3.1:59452465-59452484 MS.gene039952:intron 20.0%
!!! TTTTTCTATAAATTTTGTGG+CGG - chr3.1:59451966-59451985 MS.gene039952:intron 20.0%
! AAACCATATCTCTTAATGAT+TGG - chr3.1:59450448-59450467 MS.gene039952:CDS 25.0%
! AATTTAGAGAGACTCAAATA+CGG + chr3.1:59451270-59451289 None:intergenic 25.0%
! GCTTATTTCGTAAATCATTA+AGG + chr3.1:59452003-59452022 None:intergenic 25.0%
! GTAAAGATATTCTTAACCAT+GGG - chr3.1:59450506-59450525 MS.gene039952:CDS 25.0%
! GTAATGTTTGGTAAAATTAG+TGG - chr3.1:59452158-59452177 MS.gene039952:intron 25.0%
! TCTTAACCTTGTTAATTACA+TGG - chr3.1:59451024-59451043 MS.gene039952:CDS 25.0%
!! AGAAGCTATTTCAAAATTAG+TGG - chr3.1:59452213-59452232 MS.gene039952:intron 25.0%
!! ATCTTCTTTCTACATTTTAC+AGG - chr3.1:59452696-59452715 MS.gene039952:intron 25.0%
!! GAGATTTTCTCCTAATAAAA+AGG + chr3.1:59453253-59453272 None:intergenic 25.0%
!! TAACACAATTTTGCCAAAAT+AGG + chr3.1:59450978-59450997 None:intergenic 25.0%
!! TTTTATGATTAAGATCGAAG+TGG - chr3.1:59452285-59452304 MS.gene039952:intron 25.0%
!!! AATTTTAATGCAGTCGATAA+CGG - chr3.1:59452869-59452888 MS.gene039952:intron 25.0%
AAATTTAGATGAACACAAGC+AGG - chr3.1:59451285-59451304 MS.gene039952:intron 30.0%
AATTTAGATGAACACAAGCA+GGG - chr3.1:59451286-59451305 MS.gene039952:intron 30.0%
ACCATTATTTGTAGGAAGAT+AGG + chr3.1:59450849-59450868 None:intergenic 30.0%
AGAGTTGTATGTAGCAATAA+CGG - chr3.1:59453639-59453658 MS.gene039952:CDS 30.0%
ATATAGGGAATAGTTAGTTC+AGG - chr3.1:59453126-59453145 MS.gene039952:intron 30.0%
ATGTTATGTTTAACCAACCA+GGG + chr3.1:59452100-59452119 None:intergenic 30.0%
ATTGGAACATTAGTAACCTT+TGG - chr3.1:59452529-59452548 MS.gene039952:intron 30.0%
CATAACATATGAGTTAATGC+CGG - chr3.1:59452112-59452131 MS.gene039952:intron 30.0%
CCAAACATTACAAATTCAAC+CGG + chr3.1:59452149-59452168 None:intergenic 30.0%
CCATTATTTGTAGGAAGATA+GGG + chr3.1:59450848-59450867 None:intergenic 30.0%
CTAGTTAGTAAGTTAGTTAC+CGG + chr3.1:59451178-59451197 None:intergenic 30.0%
CTTTCGAAAAAGAATGCAAA+GGG + chr3.1:59450589-59450608 None:intergenic 30.0%
GAATTGCATACTATGTTCAA+GGG - chr3.1:59453148-59453167 MS.gene039952:intron 30.0%
GGTAAAGATATTCTTAACCA+TGG - chr3.1:59450505-59450524 MS.gene039952:CDS 30.0%
GGTGCTCTTTATATACTAAT+GGG - chr3.1:59452661-59452680 MS.gene039952:intron 30.0%
TAAGACGTGTGATTCAATTT+CGG - chr3.1:59450760-59450779 MS.gene039952:intron 30.0%
TACTAATGTTCCAATCACTT+TGG + chr3.1:59452524-59452543 None:intergenic 30.0%
TATGTTATGTTTAACCAACC+AGG + chr3.1:59452101-59452120 None:intergenic 30.0%
TCAATTCATTGCAGTATCAT+AGG - chr3.1:59453391-59453410 MS.gene039952:intron 30.0%
TGGTGCTCTTTATATACTAA+TGG - chr3.1:59452660-59452679 MS.gene039952:intron 30.0%
TTAAAAGCTGTTGCAAAAAC+TGG + chr3.1:59453195-59453214 None:intergenic 30.0%
TTACATGGTTAATTATGACC+AGG - chr3.1:59451039-59451058 MS.gene039952:CDS 30.0%
TTGCTAATGGCAATTTACAA+AGG - chr3.1:59452559-59452578 MS.gene039952:intron 30.0%
! CTTGAAGTTTATGCCTATTT+TGG - chr3.1:59450962-59450981 MS.gene039952:intron 30.0%
! GCAAAATTGTGTTATTCTAC+AGG - chr3.1:59450984-59451003 MS.gene039952:intron 30.0%
!! AATGGTTGATGATGGTAATT+TGG + chr3.1:59453488-59453507 None:intergenic 30.0%
!! TAATGATTTTCAGGAAGAGT+AGG - chr3.1:59450808-59450827 MS.gene039952:CDS 30.0%
!! TTAATGATTGGCCTTCAATT+TGG - chr3.1:59450460-59450479 MS.gene039952:CDS 30.0%
!! TTATATACTAATGGGTTGTG+TGG - chr3.1:59452669-59452688 MS.gene039952:intron 30.0%
!!! TGTTTTAAGAATTGGATCCT+TGG + chr3.1:59452769-59452788 None:intergenic 30.0%
!!! TTTGATTTTGAGTTCCAGAA+TGG + chr3.1:59452603-59452622 None:intergenic 30.0%
AACCAAAGCTTCACTTACTT+GGG - chr3.1:59451071-59451090 MS.gene039952:CDS 35.0%
AATTAACGTATATGATCGCG+AGG - chr3.1:59452804-59452823 MS.gene039952:intron 35.0%
AATTTATGTAAACTAGGCCC+TGG - chr3.1:59452080-59452099 MS.gene039952:intron 35.0%
AGGCCAATCATTAAGAGATA+TGG + chr3.1:59450454-59450473 None:intergenic 35.0%
ATGATCATCGTTGCTTGTTT+GGG - chr3.1:59453225-59453244 MS.gene039952:intron 35.0%
ATTTAGATGAACACAAGCAG+GGG - chr3.1:59451287-59451306 MS.gene039952:intron 35.0%
CCCTATCTTCCTACAAATAA+TGG - chr3.1:59450845-59450864 MS.gene039952:CDS 35.0%
CCGGTTGAATTTGTAATGTT+TGG - chr3.1:59452146-59452165 MS.gene039952:intron 35.0%
CCTTTCGAAAAAGAATGCAA+AGG + chr3.1:59450590-59450609 None:intergenic 35.0%
GAATAGAAGTTTACCTTCCA+AGG + chr3.1:59453278-59453297 None:intergenic 35.0%
GAATGGAAAATGTTGAATCC+AGG + chr3.1:59452586-59452605 None:intergenic 35.0%
GATTAACAAACCGTGTAAAG+AGG + chr3.1:59453032-59453051 None:intergenic 35.0%
GGAATTGCATACTATGTTCA+AGG - chr3.1:59453147-59453166 MS.gene039952:intron 35.0%
GGATCATCTATTGCAGTAAT+TGG + chr3.1:59453532-59453551 None:intergenic 35.0%
GTCTGATTCTGAATAGTCTT+TGG + chr3.1:59453464-59453483 None:intergenic 35.0%
TAACCAAAGCTTCACTTACT+TGG - chr3.1:59451070-59451089 MS.gene039952:CDS 35.0%
TGCTTCTTTCTCCAATTTGT+TGG + chr3.1:59453620-59453639 None:intergenic 35.0%
TTAGGAGAAAATCTCTACCT+TGG - chr3.1:59453258-59453277 MS.gene039952:intron 35.0%
TTCCTACAAATAATGGTGCT+GGG - chr3.1:59450852-59450871 MS.gene039952:CDS 35.0%
! GCTTCTTTCTCCAATTTGTT+GGG + chr3.1:59453619-59453638 None:intergenic 35.0%
! GGATTCAACATTTTCCATTC+TGG - chr3.1:59452586-59452605 MS.gene039952:intron 35.0%
! GTGAAGCTTTGGTTAAAAAC+TGG + chr3.1:59451065-59451084 None:intergenic 35.0%
! TGATTTTGTCTCCTCTTCAA+TGG + chr3.1:59453506-59453525 None:intergenic 35.0%
! TGTTTGGGCTCCTTTTTATT+AGG - chr3.1:59453240-59453259 MS.gene039952:intron 35.0%
!!! CCTTTGCATTCTTTTTCGAA+AGG - chr3.1:59450587-59450606 MS.gene039952:CDS 35.0%
AACAAAGGTGATAGAAGGCA+CGG + chr3.1:59451141-59451160 None:intergenic 40.0%
AATGCCGGATGACTTATAAC+CGG - chr3.1:59452127-59452146 MS.gene039952:intron 40.0%
ACCAAAGCTTCACTTACTTG+GGG - chr3.1:59451072-59451091 MS.gene039952:CDS 40.0%
ACCACCAAAGGATGAAATAG+TGG - chr3.1:59453591-59453610 MS.gene039952:CDS 40.0%
ACCATCATCAACCATTGAAG+AGG - chr3.1:59453492-59453511 MS.gene039952:CDS 40.0%
ACTATTTCATCCTTTGGTGG+TGG + chr3.1:59453592-59453611 None:intergenic 40.0%
ACTCTTTGAGCTTGTGTAAC+AGG + chr3.1:59451878-59451897 None:intergenic 40.0%
AGTATCATTGGTCGAACTAC+TGG + chr3.1:59452734-59452753 None:intergenic 40.0%
ATCCCAGCACCATTATTTGT+AGG + chr3.1:59450857-59450876 None:intergenic 40.0%
ATGGCAATTTACAAAGGACC+TGG - chr3.1:59452565-59452584 MS.gene039952:intron 40.0%
ATGGCTGGGAATTACATCTT+TGG - chr3.1:59450484-59450503 MS.gene039952:CDS 40.0%
CATGATCATCGTTGCTTGTT+TGG - chr3.1:59453224-59453243 MS.gene039952:intron 40.0%
CTCTTTGAGCTTGTGTAACA+GGG + chr3.1:59451877-59451896 None:intergenic 40.0%
CTTCCTACAAATAATGGTGC+TGG - chr3.1:59450851-59450870 MS.gene039952:CDS 40.0%
GAAGATGACTGCAAGAACAA+AGG + chr3.1:59451156-59451175 None:intergenic 40.0%
GAGAAAATCTCTACCTTGGA+AGG - chr3.1:59453262-59453281 MS.gene039952:intron 40.0%
GCAAGAACAAAGGTGATAGA+AGG + chr3.1:59451146-59451165 None:intergenic 40.0%
GGAACATTAGTAACCTTTGG+TGG - chr3.1:59452532-59452551 MS.gene039952:intron 40.0%
GTATCATTGGTCGAACTACT+GGG + chr3.1:59452733-59452752 None:intergenic 40.0%
TCAACCGGTTATAAGTCATC+CGG + chr3.1:59452134-59452153 None:intergenic 40.0%
TCCACTATTTCATCCTTTGG+TGG + chr3.1:59453595-59453614 None:intergenic 40.0%
TCTGACTCACAATATCAGTG+AGG - chr3.1:59451314-59451333 MS.gene039952:intron 40.0%
TTCTTAACCATGGGATGAGT+CGG - chr3.1:59450515-59450534 MS.gene039952:CDS 40.0%
TTGTTCTTGCAGTCATCTTC+CGG - chr3.1:59451156-59451175 MS.gene039952:CDS 40.0%
! AATAGTGGAGCCCAACAAAT+TGG - chr3.1:59453606-59453625 MS.gene039952:CDS 40.0%
! AGCGATGAAAATTTAGAGCG+AGG - chr3.1:59450664-59450683 MS.gene039952:intron 40.0%
!! AAGATAGGGAGTGTCATCTT+TGG + chr3.1:59450834-59450853 None:intergenic 40.0%
!! GATTGGCCTTCAATTTGGTA+TGG - chr3.1:59450465-59450484 MS.gene039952:CDS 40.0%
!! TATAAAGAGCACCAGCAGTT+TGG + chr3.1:59452654-59452673 None:intergenic 40.0%
!! TCCTCTTCAATGGTTGATGA+TGG + chr3.1:59453496-59453515 None:intergenic 40.0%
ACGTATATGATCGCGAGGTT+TGG - chr3.1:59452809-59452828 MS.gene039952:intron 45.0%
AGGCCTTTATACAGTGGTGT+GGG - chr3.1:59453432-59453451 MS.gene039952:intron 45.0%
ATACCCAGCAGAGCTATCAT+TGG - chr3.1:59452899-59452918 MS.gene039952:CDS 45.0%
ATTGGCAACCTTGATATGCC+TGG - chr3.1:59452917-59452936 MS.gene039952:CDS 45.0%
CATCGTTTATCGCAATGCCA+TGG - chr3.1:59450546-59450565 MS.gene039952:CDS 45.0%
CATTAGCAATGCACCACCAA+AGG + chr3.1:59452548-59452567 None:intergenic 45.0%
CCAAGCTTGTGAATGACGTT+CGG + chr3.1:59452979-59452998 None:intergenic 45.0%
CCAATGATACTTGATCGAGC+AGG - chr3.1:59452743-59452762 MS.gene039952:intron 45.0%
CCTGCTCGATCAAGTATCAT+TGG + chr3.1:59452746-59452765 None:intergenic 45.0%
CGAACGTCATTCACAAGCTT+GGG - chr3.1:59452977-59452996 MS.gene039952:CDS 45.0%
CGAAGTCAAGCCAAAGTGAT+TGG - chr3.1:59452511-59452530 MS.gene039952:intron 45.0%
GCAACGATGATCATGCAAAG+AGG + chr3.1:59453219-59453238 None:intergenic 45.0%
GCCTTCAATTTGGTATGGCT+GGG - chr3.1:59450470-59450489 MS.gene039952:CDS 45.0%
GCTCTATGCTCCTCTTTACA+CGG - chr3.1:59453019-59453038 MS.gene039952:intron 45.0%
GCTTTGGTTAAAAACTGGCC+TGG + chr3.1:59451060-59451079 None:intergenic 45.0%
GGAGCTGTTATCATTGCACT+AGG - chr3.1:59453412-59453431 MS.gene039952:intron 45.0%
GGCTCCACTATTTCATCCTT+TGG + chr3.1:59453598-59453617 None:intergenic 45.0%
TAGGCCTTTATACAGTGGTG+TGG - chr3.1:59453431-59453450 MS.gene039952:intron 45.0%
TATGTAAACTAGGCCCTGGT+TGG - chr3.1:59452084-59452103 MS.gene039952:intron 45.0%
TCCCAGCCATACCAAATTGA+AGG + chr3.1:59450474-59450493 None:intergenic 45.0%
TCCCCAAGTAAGTGAAGCTT+TGG + chr3.1:59451076-59451095 None:intergenic 45.0%
TCTCATAACCACCAAACTGC+TGG - chr3.1:59452640-59452659 MS.gene039952:intron 45.0%
TGCACTAGGCCTTTATACAG+TGG - chr3.1:59453426-59453445 MS.gene039952:intron 45.0%
TGCATACTATGTTCAAGGGC+TGG - chr3.1:59453152-59453171 MS.gene039952:intron 45.0%
TTCCCCACACCACTGTATAA+AGG + chr3.1:59453438-59453457 None:intergenic 45.0%
TTGAGCTTGTGTAACAGGGA+CGG + chr3.1:59451873-59451892 None:intergenic 45.0%
! AACAGGGACGGATTTGAACT+GGG + chr3.1:59451861-59451880 None:intergenic 45.0%
! AGCAGTTTGGTGGTTATGAG+AGG + chr3.1:59452641-59452660 None:intergenic 45.0%
! GTTGGAGCGTCTTAAATGCA+AGG - chr3.1:59452483-59452502 MS.gene039952:intron 45.0%
! TAACAGGGACGGATTTGAAC+TGG + chr3.1:59451862-59451881 None:intergenic 45.0%
! TTGCCAATGATAGCTCTGCT+GGG + chr3.1:59452905-59452924 None:intergenic 45.0%
!! CTTTGGTGGTGCATTGCTAA+TGG - chr3.1:59452546-59452565 MS.gene039952:intron 45.0%
!! TTTCATCCTTTGGTGGTGGT+TGG + chr3.1:59453588-59453607 None:intergenic 45.0%
!! ATTAAACTAATTATTATATA+TGG + chr3.1:59451222-59451241 None:intergenic 5.0%
!! TAAGAATTAAAAAAAAAAAA+AGG - chr3.1:59451634-59451653 MS.gene039952:intron 5.0%
!!! AAGTAAAAAAATAATAATTT+TGG - chr3.1:59451814-59451833 MS.gene039952:intron 5.0%
ATACTTGATCGAGCAGGCCA+AGG - chr3.1:59452749-59452768 MS.gene039952:intron 50.0%
CATTCACAAGCTTGGGCCAT+TGG - chr3.1:59452984-59453003 MS.gene039952:intron 50.0%
CCGAACGTCATTCACAAGCT+TGG - chr3.1:59452976-59452995 MS.gene039952:CDS 50.0%
GAGCCTATAATCCCAGCCAA+TGG + chr3.1:59453003-59453022 None:intergenic 50.0%
GATTTGAACTGGGCATGGTG+TGG + chr3.1:59451851-59451870 None:intergenic 50.0%
GGAAAACCAACCACCACCAA+AGG - chr3.1:59453579-59453598 MS.gene039952:CDS 50.0%
GGCCTTCAATTTGGTATGGC+TGG - chr3.1:59450469-59450488 MS.gene039952:CDS 50.0%
GGCCTTTATACAGTGGTGTG+GGG - chr3.1:59453433-59453452 MS.gene039952:intron 50.0%
GTCCATGTTCGTCTTGTGCA+GGG + chr3.1:59453349-59453368 None:intergenic 50.0%
TAGATGAACACAAGCAGGGG+CGG - chr3.1:59451290-59451309 MS.gene039952:intron 50.0%
TGTCCATGTTCGTCTTGTGC+AGG + chr3.1:59453350-59453369 None:intergenic 50.0%
! GTTGCCAATGATAGCTCTGC+TGG + chr3.1:59452906-59452925 None:intergenic 50.0%
!! AAAGAGCACCAGCAGTTTGG+TGG + chr3.1:59452651-59452670 None:intergenic 50.0%
!! CGCGAGGTTTGGTTCTTATG+TGG - chr3.1:59452820-59452839 MS.gene039952:intron 50.0%
GCAACCTTGATATGCCTGGC+GGG - chr3.1:59452921-59452940 MS.gene039952:CDS 55.0%
GGCAACCTTGATATGCCTGG+CGG - chr3.1:59452920-59452939 MS.gene039952:CDS 55.0%
GTCCCTGCACAAGACGAACA+TGG - chr3.1:59453344-59453363 MS.gene039952:intron 55.0%
! AAAGGGCGCAAGAGCGATCA+CGG + chr3.1:59450572-59450591 None:intergenic 55.0%
! ACAAGCTTGGGCCATTGGCT+GGG - chr3.1:59452989-59453008 MS.gene039952:intron 55.0%
! ACACGAACCGACTCATCCCA+TGG + chr3.1:59450525-59450544 None:intergenic 55.0%
! GGACGGATTTGAACTGGGCA+TGG + chr3.1:59451856-59451875 None:intergenic 55.0%
! GGGCCATTGGCTGGGATTAT+AGG - chr3.1:59452997-59453016 MS.gene039952:intron 55.0%
! GGGCTGGTGATGCAAATGAG+AGG - chr3.1:59453168-59453187 MS.gene039952:intron 55.0%
ACCTTGATATGCCTGGCGGG+AGG - chr3.1:59452924-59452943 MS.gene039952:CDS 60.0%
AGCAACTGCGGTGGCACTTG+TGG - chr3.1:59452953-59452972 MS.gene039952:CDS 60.0%
CACAAGCTTGGGCCATTGGC+TGG - chr3.1:59452988-59453007 MS.gene039952:intron 60.0%
TCCTCCCGCCAGGCATATCA+AGG + chr3.1:59452928-59452947 None:intergenic 60.0%
! AGGAGCACAAGCAACTGCGG+TGG - chr3.1:59452944-59452963 MS.gene039952:CDS 60.0%
! GGGAGGAGCACAAGCAACTG+CGG - chr3.1:59452941-59452960 MS.gene039952:CDS 60.0%
CGCAAGAGCGATCACGGCCA+TGG + chr3.1:59450566-59450585 None:intergenic 65.0%
TTGCTTGTGCTCCTCCCGCC+AGG + chr3.1:59452938-59452957 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 59450397 59453666 59450397 ID=MS.gene039952
chr3.1 mRNA 59450397 59453666 59450397 ID=MS.gene039952.t1;Parent=MS.gene039952
chr3.1 exon 59453455 59453666 59453455 ID=MS.gene039952.t1.exon1;Parent=MS.gene039952.t1
chr3.1 CDS 59453455 59453666 59453455 ID=cds.MS.gene039952.t1;Parent=MS.gene039952.t1
chr3.1 exon 59453180 59453242 59453180 ID=MS.gene039952.t1.exon2;Parent=MS.gene039952.t1
chr3.1 CDS 59453180 59453242 59453180 ID=cds.MS.gene039952.t1;Parent=MS.gene039952.t1
chr3.1 exon 59452886 59453002 59452886 ID=MS.gene039952.t1.exon3;Parent=MS.gene039952.t1
chr3.1 CDS 59452886 59453002 59452886 ID=cds.MS.gene039952.t1;Parent=MS.gene039952.t1
chr3.1 exon 59451346 59451580 59451346 ID=MS.gene039952.t1.exon4;Parent=MS.gene039952.t1
chr3.1 CDS 59451346 59451580 59451346 ID=cds.MS.gene039952.t1;Parent=MS.gene039952.t1
chr3.1 exon 59451023 59451181 59451023 ID=MS.gene039952.t1.exon5;Parent=MS.gene039952.t1
chr3.1 CDS 59451023 59451181 59451023 ID=cds.MS.gene039952.t1;Parent=MS.gene039952.t1
chr3.1 exon 59450780 59450931 59450780 ID=MS.gene039952.t1.exon6;Parent=MS.gene039952.t1
chr3.1 CDS 59450780 59450931 59450780 ID=cds.MS.gene039952.t1;Parent=MS.gene039952.t1
chr3.1 exon 59450397 59450658 59450397 ID=MS.gene039952.t1.exon7;Parent=MS.gene039952.t1
chr3.1 CDS 59450397 59450658 59450397 ID=cds.MS.gene039952.t1;Parent=MS.gene039952.t1
Gene Sequence

>MS.gene039952

ATGAGTGCCAAAAATCAGATTTCTAGATTATTTCTTCTATTTATTAATGCTAAACCATATCTCTTAATGATTGGCCTTCAATTTGGTATGGCTGGGAATTACATCTTTGGTAAAGATATTCTTAACCATGGGATGAGTCGGTTCGTGTTCATCGTTTATCGCAATGCCATGGCCGTGATCGCTCTTGCGCCCTTTGCATTCTTTTTCGAAAGGTATCTTAATGTGTTAGTCACGACTACTCTTTTACTATCAGAACAAAATTAAATTAGCGATGAAAATTTAGAGCGAGGAAAAAAGTGAATTTTTCTCTCTCTAACTCTGTCACTAAATTTAGTAACGAGAAGAAATCTATAATTATATCAATAAGACGTGTGATTCAATTTCGGTATTACATTTCTAAAAAAAGTTATTTAATGATTTTCAGGAAGAGTAGGCCAAAGATGACACTCCCTATCTTCCTACAAATAATGGTGCTGGGATTTCTAGAGTAATGATCTAAGACCGCAAATACTTATGTACATAATGATCTAGCTAAAAGAATACAAATATATTTAATTACTAATTACTTGAAGTTTATGCCTATTTTGGCAAAATTGTGTTATTCTACAGGATATGAGTTAATTATCATCTTAACCTTGTTAATTACATGGTTAATTATGACCAGGCCAGTTTTTAACCAAAGCTTCACTTACTTGGGGATGAAGTATACTTCAGCTTCATTCACATCTGCTATTATGAATGCCGTGCCTTCTATCACCTTTGTTCTTGCAGTCATCTTCCGGTAACTAACTTACTAACTAGAATTAATCAATTTTATTTCATCCATATATAATAATTAGTTTAATTAAAGTGATACTAATAATCATTTTACCGTATTTGAGTCTCTCTAAATTTAGATGAACACAAGCAGGGGCGGATCTGACTCACAATATCAGTGAGGCAAAAAAATTCCATCAGATAATTAAATAATACTAAATTTAATAAAGACGTTAAAAGAGATCAATCAAATGCTCTAGCAGAATACTCGCGTTCTTTTTGTTTAAGCAAGTCGCAATTGCGTAGAAATTAAAAAATAAAAAGATCTATGTATTGATATATGAATAAAAATATAGACAGATGAACAAATTGCACAAAACATTATTTATGTATTAAATACGAGTAAAAATATAGACATGTGTATAAATTAAAAATAAAATCGATCCCCGTATTAATATATAAGTTAAAGTATAGACACATGTAAGAATTAAAAAAAAAAAAAGGTTCCTTTACTAATATATGAGTAAAAATACAGACATGTGTATATATTAAAAAAAAAAGTTCATATATTAATATATGAATAAAAATATAGACACATGTATAAATATAAAAGATGTTTGTATTAATATATGAATAAAATTACAAAGTAAACTAATAAAAAAAGTAAAAAAATAATAATTTTGGTGTGGCACTTACCACACCATGCCCAGTTCAAATCCGTCCCTGTTACACAAGCTCAAAGAGTACTTGTGTAGTTATTTTTATATTTAAACAAAATTTAACACATGCTCAAGTTTGATAAGTAATGACACTTTTTTCTATAAATTTTGTGGCGGCTTACATCGTACCTTAATGATTTACGAAATAAGCTACATAATTTACGGAAAAAATGTCATTATTTATGTAAAATATTTCAATAGAACATGAAATTTATGTAAACTAGGCCCTGGTTGGTTAAACATAACATATGAGTTAATGCCGGATGACTTATAACCGGTTGAATTTGTAATGTTTGGTAAAATTAGTGGTTGAAATAGCTTTTTTTTGAAAGAAAAAAAAAAGAAGCTATTTCAAAATTAGTGGTTAAAAAAAAATAGCTTATAAATATGAAATGATACTAAAAAATGTGCATTTTTATGATTAAGATCGAAGTGGTAAAATAGAGATAAAAAGTGATAAGCTTTAAGCTACTTGACATAACTTATCAAAACCGTTATAAGCTCATTAAAATAAACTATAATCTCATGTAAAAATGACAATTACTATACAGATTTTTTTTAATGATACGAACTTATAAGCTATAAGTCATAAATTCAATTTTTTTGTTTAGGTTGGAGCGTCTTAAATGCAAGGAAATTCGAAGTCAAGCCAAAGTGATTGGAACATTAGTAACCTTTGGTGGTGCATTGCTAATGGCAATTTACAAAGGACCTGGATTCAACATTTTCCATTCTGGAACTCAAAATCAAAATGCAACTCACGAATCCTCTCATAACCACCAAACTGCTGGTGCTCTTTATATACTAATGGGTTGTGTGGCTTTATCTTCTTTCTACATTTTACAGGTAAACTAATGACCCAGTAGTTCGACCAATGATACTTGATCGAGCAGGCCAAGGATCCAATTCTTAAAACACTTAACTAATTAATAAATTAACGTATATGATCGCGAGGTTTGGTTCTTATGTGGATTATTATTTCTAAATTGTTTGTGGGAATTTTAATGCAGTCGATAACGGTAAAAGCATACCCAGCAGAGCTATCATTGGCAACCTTGATATGCCTGGCGGGAGGAGCACAAGCAACTGCGGTGGCACTTGTGGCCGAACGTCATTCACAAGCTTGGGCCATTGGCTGGGATTATAGGCTCTATGCTCCTCTTTACACGGTTTGTTAATCAGTTAATTAGTTTGTCATTCACAAGCTTAGTTAGAAAAAAATTCAAATAATTTTTTTAATCAGTTTCTTAATTTATATAGGGAATAGTTAGTTCAGGAATTGCATACTATGTTCAAGGGCTGGTGATGCAAATGAGAGGTCCAGTTTTTGCAACAGCTTTTAATCCTCTTTGCATGATCATCGTTGCTTGTTTGGGCTCCTTTTTATTAGGAGAAAATCTCTACCTTGGAAGGTAAACTTCTATTCTTAATTTCTCAATTTATGTTTAACAGTAAAACTTATTAATAATCAGGTCCCTGCACAAGACGAACATGGACACATTTTATATAATTTATGTTTTCAATTCATTGCAGTATCATAGGAGCTGTTATCATTGCACTAGGCCTTTATACAGTGGTGTGGGGAAAAGCCAAAGACTATTCAGAATCAGACACCAAATTACCATCATCAACCATTGAAGAGGAGACAAAATCAATGCCAATTACTGCAATAGATGATCCCAAAATTGATATTATTGCTGTAAATTTGGAAAACCAACCACCACCAAAGGATGAAATAGTGGAGCCCAACAAATTGGAGAAAGAAGCAGAGTTGTATGTAGCAATAACGGTTTAA
Protein sequence

>MS.gene039952.t1

MSAKNQISRLFLLFINAKPYLLMIGLQFGMAGNYIFGKDILNHGMSRFVFIVYRNAMAVIALAPFAFFFERKSRPKMTLPIFLQIMVLGFLEPVFNQSFTYLGMKYTSASFTSAIMNAVPSITFVLAVIFRLERLKCKEIRSQAKVIGTLVTFGGALLMAIYKGPGFNIFHSGTQNQNATHESSHNHQTAGALYILMGCVALSSFYILQSITVKAYPAELSLATLICLAGGAQATAVALVAERHSQAWAIGWDYRLYAPLYTGIVSSGIAYYVQGLVMQMRGPVFATAFNPLCMIIVACLGSFLLGENLYLGSIIGAVIIALGLYTVVWGKAKDYSESDTKLPSSTIEEETKSMPITAIDDPKIDIIAVNLENQPPPKDEIVEPNKLEKEAELYVAITV