Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene040102.t1 | XP_003631133.1 | 95.6 | 365 | 15 | 1 | 1 | 365 | 1 | 364 | 1.20E-172 | 615.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene040102.t1 | Q8VWG7 | 64.4 | 379 | 119 | 2 | 1 | 364 | 2 | 379 | 1.3e-114 | 414.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene040102.t1 | G7LE77 | 95.6 | 365 | 15 | 1 | 1 | 365 | 1 | 364 | 8.6e-173 | 615.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene96326 | MS.gene040102 | PPI |
| MS.gene012318 | MS.gene040102 | PPI |
| MS.gene040102 | MS.gene073336 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene040102.t1 | MTR_8g107460 | 96.164 | 365 | 13 | 1 | 1 | 365 | 1 | 364 | 0.0 | 719 |
| MS.gene040102.t1 | MTR_8g107460 | 97.255 | 255 | 6 | 1 | 1 | 255 | 1 | 254 | 2.12e-180 | 501 |
| MS.gene040102.t1 | MTR_4g102390 | 57.377 | 244 | 82 | 2 | 1 | 224 | 1 | 242 | 5.18e-88 | 271 |
| MS.gene040102.t1 | MTR_1g023140 | 47.748 | 111 | 58 | 0 | 251 | 361 | 2 | 112 | 1.52e-32 | 118 |
| MS.gene040102.t1 | MTR_3g112410 | 45.536 | 112 | 61 | 0 | 251 | 362 | 2 | 113 | 2.60e-30 | 112 |
| MS.gene040102.t1 | MTR_5g021180 | 44.643 | 112 | 62 | 0 | 253 | 364 | 6 | 117 | 6.34e-30 | 111 |
| MS.gene040102.t1 | MTR_7g073680 | 38.017 | 121 | 75 | 0 | 245 | 365 | 14 | 134 | 1.54e-27 | 105 |
| MS.gene040102.t1 | MTR_8g005320 | 36.885 | 122 | 75 | 1 | 240 | 359 | 9 | 130 | 1.21e-25 | 100 |
| MS.gene040102.t1 | MTR_7g009070 | 40.196 | 102 | 61 | 0 | 260 | 361 | 31 | 132 | 3.24e-25 | 99.8 |
| MS.gene040102.t1 | MTR_8g006685 | 36.885 | 122 | 75 | 1 | 240 | 359 | 78 | 199 | 4.20e-25 | 101 |
| MS.gene040102.t1 | MTR_8g006560 | 36.885 | 122 | 75 | 1 | 240 | 359 | 78 | 199 | 4.20e-25 | 101 |
| MS.gene040102.t1 | MTR_4g094690 | 44.211 | 95 | 51 | 1 | 258 | 350 | 62 | 156 | 5.81e-22 | 92.0 |
| MS.gene040102.t1 | MTR_2g078020 | 29.880 | 251 | 142 | 5 | 113 | 362 | 478 | 695 | 5.70e-21 | 94.7 |
| MS.gene040102.t1 | MTR_5g037950 | 42.157 | 102 | 59 | 0 | 257 | 358 | 21 | 122 | 5.35e-20 | 85.1 |
| MS.gene040102.t1 | MTR_5g037930 | 38.679 | 106 | 65 | 0 | 256 | 361 | 21 | 126 | 2.86e-19 | 83.2 |
| MS.gene040102.t1 | MTR_2g082590 | 33.645 | 107 | 71 | 0 | 252 | 358 | 7 | 113 | 7.41e-19 | 82.0 |
| MS.gene040102.t1 | MTR_5g037890 | 40.385 | 104 | 62 | 0 | 255 | 358 | 18 | 121 | 1.50e-16 | 75.9 |
| MS.gene040102.t1 | MTR_2g082590 | 30.000 | 120 | 71 | 1 | 252 | 358 | 7 | 126 | 1.05e-15 | 73.6 |
| MS.gene040102.t1 | MTR_4g081380 | 30.189 | 106 | 74 | 0 | 253 | 358 | 8 | 113 | 1.60e-15 | 72.8 |
| MS.gene040102.t1 | MTR_2g010750 | 31.731 | 104 | 71 | 0 | 255 | 358 | 9 | 112 | 1.82e-15 | 72.8 |
| MS.gene040102.t1 | MTR_4g088905 | 33.333 | 111 | 70 | 1 | 255 | 365 | 3 | 109 | 5.86e-14 | 73.2 |
| MS.gene040102.t1 | MTR_2g079420 | 35.461 | 141 | 73 | 7 | 223 | 358 | 42 | 169 | 2.81e-13 | 67.8 |
| MS.gene040102.t1 | MTR_3g089065 | 37.500 | 80 | 48 | 2 | 284 | 361 | 93 | 172 | 8.85e-13 | 66.2 |
| MS.gene040102.t1 | MTR_3g452710 | 33.333 | 105 | 68 | 1 | 92 | 194 | 4 | 108 | 4.33e-11 | 64.3 |
| MS.gene040102.t1 | MTR_1g114290 | 35.294 | 85 | 53 | 2 | 259 | 342 | 69 | 152 | 5.94e-11 | 61.2 |
| MS.gene040102.t1 | MTR_3g452710 | 33.333 | 105 | 68 | 1 | 92 | 194 | 4 | 108 | 7.78e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene040102.t1 | AT3G17880 | 62.269 | 379 | 127 | 2 | 1 | 364 | 2 | 379 | 1.05e-172 | 486 |
| MS.gene040102.t1 | AT3G17880 | 63.710 | 372 | 126 | 3 | 1 | 364 | 2 | 372 | 1.34e-170 | 480 |
| MS.gene040102.t1 | AT4G22670 | 56.870 | 262 | 83 | 3 | 1 | 234 | 1 | 260 | 2.24e-97 | 296 |
| MS.gene040102.t1 | AT3G51030 | 46.847 | 111 | 59 | 0 | 251 | 361 | 2 | 112 | 1.39e-31 | 115 |
| MS.gene040102.t1 | AT1G45145 | 40.909 | 110 | 65 | 0 | 254 | 363 | 4 | 113 | 1.86e-27 | 105 |
| MS.gene040102.t1 | AT1G19730 | 42.105 | 114 | 65 | 1 | 251 | 363 | 2 | 115 | 5.88e-27 | 103 |
| MS.gene040102.t1 | AT5G42980 | 43.519 | 108 | 61 | 0 | 254 | 361 | 4 | 111 | 9.79e-26 | 100 |
| MS.gene040102.t1 | AT3G08710 | 39.048 | 105 | 64 | 0 | 255 | 359 | 23 | 127 | 1.24e-25 | 100 |
| MS.gene040102.t1 | AT3G08710 | 39.048 | 105 | 64 | 0 | 255 | 359 | 23 | 127 | 1.24e-25 | 100 |
| MS.gene040102.t1 | AT3G08710 | 39.048 | 105 | 64 | 0 | 255 | 359 | 23 | 127 | 1.24e-25 | 100 |
| MS.gene040102.t1 | AT5G39950 | 39.048 | 105 | 64 | 0 | 256 | 360 | 26 | 130 | 5.56e-24 | 96.3 |
| MS.gene040102.t1 | AT1G59730 | 40.741 | 108 | 64 | 0 | 254 | 361 | 20 | 127 | 5.81e-24 | 96.3 |
| MS.gene040102.t1 | AT1G69880 | 37.615 | 109 | 68 | 0 | 257 | 365 | 39 | 147 | 5.73e-23 | 94.0 |
| MS.gene040102.t1 | AT3G56420 | 33.333 | 108 | 72 | 0 | 255 | 362 | 40 | 147 | 5.86e-21 | 88.6 |
| MS.gene040102.t1 | AT3G56420 | 33.333 | 108 | 72 | 0 | 255 | 362 | 40 | 147 | 5.86e-21 | 88.6 |
| MS.gene040102.t1 | AT3G56420 | 33.333 | 108 | 72 | 0 | 255 | 362 | 40 | 147 | 5.86e-21 | 88.6 |
| MS.gene040102.t1 | AT2G40790 | 33.945 | 109 | 69 | 1 | 260 | 365 | 42 | 150 | 1.14e-18 | 82.4 |
| MS.gene040102.t1 | AT2G40790 | 33.945 | 109 | 69 | 1 | 260 | 365 | 42 | 150 | 1.14e-18 | 82.4 |
| MS.gene040102.t1 | AT2G35010 | 39.286 | 112 | 66 | 1 | 251 | 360 | 80 | 191 | 1.55e-18 | 83.2 |
| MS.gene040102.t1 | AT2G35010 | 39.286 | 112 | 66 | 1 | 251 | 360 | 80 | 191 | 1.55e-18 | 83.2 |
| MS.gene040102.t1 | AT1G53300 | 24.528 | 265 | 166 | 4 | 100 | 363 | 468 | 699 | 2.21e-18 | 87.0 |
| MS.gene040102.t1 | AT1G31020 | 42.718 | 103 | 57 | 1 | 260 | 360 | 54 | 156 | 1.10e-16 | 77.0 |
| MS.gene040102.t1 | AT3G58620 | 24.046 | 262 | 164 | 4 | 100 | 360 | 452 | 679 | 3.84e-15 | 77.4 |
| MS.gene040102.t1 | AT1G11530 | 31.731 | 104 | 71 | 0 | 255 | 358 | 2 | 105 | 9.89e-15 | 70.5 |
| MS.gene040102.t1 | AT2G42580 | 23.462 | 260 | 164 | 4 | 100 | 358 | 461 | 686 | 2.42e-13 | 71.6 |
| MS.gene040102.t1 | AT4G32580 | 32.941 | 85 | 57 | 0 | 281 | 365 | 25 | 109 | 4.37e-13 | 67.0 |
| MS.gene040102.t1 | AT4G04950 | 33.333 | 84 | 56 | 0 | 281 | 364 | 25 | 108 | 3.59e-12 | 67.8 |
| MS.gene040102.t1 | AT1G04190 | 29.412 | 153 | 92 | 4 | 82 | 234 | 1 | 137 | 3.40e-11 | 64.3 |
Find 67 sgRNAs with CRISPR-Local
Find 237 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCAGGTTCCGTCTTGGGTT+GGG | 0.281608 | 4.4:-142616 | None:intergenic |
| GATTGCTATGGCACTTAAAA+AGG | 0.281728 | 4.4:+143166 | MS.gene040102:CDS |
| AGCAAACCCTAAATGGATAT+TGG | 0.323083 | 4.4:+142394 | None:intergenic |
| TTGTATCCTTTGGCTGAGTC+TGG | 0.328325 | 4.4:-143053 | None:intergenic |
| TGATTCTGACACTGCCTTGA+AGG | 0.370019 | 4.4:+142941 | MS.gene040102:CDS |
| AGCTCTGGTGGCATAGAGTA+TGG | 0.382849 | 4.4:-142877 | None:intergenic |
| TCTTCAAATCTTATCTTCTC+AGG | 0.387415 | 4.4:+142494 | MS.gene040102:CDS |
| TCAACATCAGGTTCCGTCTT+GGG | 0.391246 | 4.4:-142621 | None:intergenic |
| GATAAGATTTGAAGAATTGA+AGG | 0.406427 | 4.4:-142486 | None:intergenic |
| TGAATGTGGATTCAACAAAA+TGG | 0.408169 | 4.4:-142853 | None:intergenic |
| AACCACTCTCTGATACTTCT+CGG | 0.409422 | 4.4:-145751 | None:intergenic |
| TCAGGTTCCGTCTTGGGTTG+GGG | 0.411282 | 4.4:-142615 | None:intergenic |
| GAATCACGGATAGCGGCATT+TGG | 0.421359 | 4.4:-142924 | None:intergenic |
| TATTCACTCTGTTAGTGAAC+TGG | 0.425636 | 4.4:+145620 | MS.gene040102:CDS |
| ATAGTTGTGCAGCATCCCTT+TGG | 0.428829 | 4.4:-142761 | None:intergenic |
| CGCTTGATCAAAATTACCTT+GGG | 0.441800 | 4.4:-142811 | None:intergenic |
| CAATGACCCTCCTCAAAAGA+TGG | 0.446444 | 4.4:+142710 | MS.gene040102:CDS |
| AGGATTATCAAGGGCTATGT+TGG | 0.453178 | 4.4:+143082 | MS.gene040102:CDS |
| CATTTAAAAGGGCAAGTGAT+TGG | 0.455412 | 4.4:+145597 | MS.gene040102:intron |
| CAAGGGCTATGTTGGGACTC+TGG | 0.461519 | 4.4:+143090 | MS.gene040102:CDS |
| GCATTGTCTGCTTTAAAAGA+TGG | 0.463326 | 4.4:+144317 | MS.gene040102:CDS |
| CATCAGGTTCCGTCTTGGGT+TGG | 0.464495 | 4.4:-142617 | None:intergenic |
| GTTCCGTCTTGGGTTGGGGA+GGG | 0.464783 | 4.4:-142611 | None:intergenic |
| TTCACCACTTTATACAAGCT+TGG | 0.467131 | 4.4:+145728 | MS.gene040102:CDS |
| TTTAAAAGTTGATATAGATA+AGG | 0.469297 | 4.4:+145776 | MS.gene040102:CDS |
| ACAAAATACGAGGATTATCA+AGG | 0.476963 | 4.4:+143072 | MS.gene040102:CDS |
| ATGGAAGAAACGAACCTTCA+AGG | 0.479982 | 4.4:-142955 | None:intergenic |
| ATCAACATCAGGTTCCGTCT+TGG | 0.506363 | 4.4:-142622 | None:intergenic |
| GGTTCCGTCTTGGGTTGGGG+AGG | 0.509145 | 4.4:-142612 | None:intergenic |
| GCGCTTGATCAAAATTACCT+TGG | 0.514542 | 4.4:-142812 | None:intergenic |
| TCATCATTATCATCAACATC+AGG | 0.516507 | 4.4:-142633 | None:intergenic |
| TGAACGCTTACGAAAGCAAA+AGG | 0.522287 | 4.4:+143311 | MS.gene040102:CDS |
| GGATTATCAAGGGCTATGTT+GGG | 0.522634 | 4.4:+143083 | MS.gene040102:CDS |
| TACTTTACTGCAACATGGTG+TGG | 0.523444 | 4.4:+145690 | MS.gene040102:CDS |
| GAAGGAGTATGAAGAAGAGA+AGG | 0.524677 | 4.4:-142463 | None:intergenic |
| AGAGATTGACAGTGTGGTGG+GGG | 0.533886 | 4.4:+145866 | MS.gene040102:CDS |
| ATAAGATTTGAAGAATTGAA+GGG | 0.542023 | 4.4:-142485 | None:intergenic |
| TCAAGTAACTGAAGACCAAA+GGG | 0.543458 | 4.4:+142746 | MS.gene040102:CDS |
| TCTTCAGTTACTTGAGCAGA+GGG | 0.545983 | 4.4:-142738 | None:intergenic |
| AGGAAGATTGCTCAACATGC+CGG | 0.551486 | 4.4:+145909 | MS.gene040102:CDS |
| AAAGAGATTGACAGTGTGGT+GGG | 0.555285 | 4.4:+145864 | MS.gene040102:CDS |
| CCCATAAAATTGAGGAGCAT+AGG | 0.561420 | 4.4:+143280 | MS.gene040102:CDS |
| GTCTTCAGTTACTTGAGCAG+AGG | 0.568031 | 4.4:-142739 | None:intergenic |
| GCCAAATGCCCATAAAATTG+AGG | 0.568287 | 4.4:+143272 | MS.gene040102:CDS |
| CAGTGGATGTCGCAGCACGC+TGG | 0.569047 | 4.4:+145799 | MS.gene040102:CDS |
| GGTAGTAACTTAAAGAGAGC+CGG | 0.571487 | 4.4:-145928 | None:intergenic |
| CTCAAGTAACTGAAGACCAA+AGG | 0.574078 | 4.4:+142745 | MS.gene040102:CDS |
| TCGGCCAAGCTTGTATAAAG+TGG | 0.578240 | 4.4:-145732 | None:intergenic |
| GATTTGAAGAATTGAAGGGA+AGG | 0.584202 | 4.4:-142481 | None:intergenic |
| CATCCCTCCCCAACCCAAGA+CGG | 0.588671 | 4.4:+142608 | MS.gene040102:CDS |
| GCAATTGATGCTATATCCCA+AGG | 0.590067 | 4.4:+142795 | MS.gene040102:CDS |
| AATGACCCTCCTCAAAAGAT+GGG | 0.593153 | 4.4:+142711 | MS.gene040102:CDS |
| GCATAGAGTATGGATGAATG+TGG | 0.594896 | 4.4:-142867 | None:intergenic |
| AGTTGATATAGATAAGGCAG+TGG | 0.599194 | 4.4:+145782 | MS.gene040102:CDS |
| CAAAGAGATTGACAGTGTGG+TGG | 0.605311 | 4.4:+145863 | MS.gene040102:CDS |
| TCAAGGCAGTGTCAGAATCA+CGG | 0.606228 | 4.4:-142938 | None:intergenic |
| TTATGATGAAGAGATTGCTA+TGG | 0.616304 | 4.4:+143154 | MS.gene040102:CDS |
| TTCTGTACTTTACTGCAACA+TGG | 0.622354 | 4.4:+145685 | MS.gene040102:CDS |
| ATCAATCCAGACTCAGCCAA+AGG | 0.627906 | 4.4:+143047 | MS.gene040102:CDS |
| GTGGTGAAATGTAACGACAA+GGG | 0.632549 | 4.4:-145713 | None:intergenic |
| AAGAGATTGACAGTGTGGTG+GGG | 0.633527 | 4.4:+145865 | MS.gene040102:CDS |
| GGCCGAGAAGTATCAGAGAG+TGG | 0.634912 | 4.4:+145749 | MS.gene040102:CDS |
| CAAAATACGAGGATTATCAA+GGG | 0.635607 | 4.4:+143073 | MS.gene040102:CDS |
| AGTGTCAGAATCACGGATAG+CGG | 0.639101 | 4.4:-142931 | None:intergenic |
| AGTGGTGAAATGTAACGACA+AGG | 0.675536 | 4.4:-145714 | None:intergenic |
| GCCAAAGGATACAAAATACG+AGG | 0.683690 | 4.4:+143062 | MS.gene040102:CDS |
| TGGCAAAGAGATTGACAGTG+TGG | 0.743695 | 4.4:+145860 | MS.gene040102:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTTAACAAAATTAATAAATA+AGG | + | chr4.4:144974-144993 | MS.gene040102:intron | 10.0% |
| !!! | TTTAAAAATTATAGTTTTCA+AGG | + | chr4.4:143493-143512 | MS.gene040102:intron | 10.0% |
| !! | ACAAAAAACTTAGTAAATTA+AGG | - | chr4.4:145449-145468 | None:intergenic | 15.0% |
| !! | CAAAAAACTTAGTAAATTAA+GGG | - | chr4.4:145448-145467 | None:intergenic | 15.0% |
| !!! | ACATTTTTCTTTGTAAAAAA+TGG | + | chr4.4:145840-145859 | MS.gene040102:CDS | 15.0% |
| !!! | ATTTTTAAAAACAAACTGAA+AGG | - | chr4.4:143482-143501 | None:intergenic | 15.0% |
| !!! | TTTAAAAGTTGATATAGATA+AGG | + | chr4.4:145776-145795 | MS.gene040102:CDS | 15.0% |
| !!! | TTTACTAAGTTTTTTGTTTT+TGG | + | chr4.4:145452-145471 | MS.gene040102:intron | 15.0% |
| !!! | TTTTTAAAAACAAACTGAAA+GGG | - | chr4.4:143481-143500 | None:intergenic | 15.0% |
| !!! | TTTTTTACAAAGAAAAATGT+TGG | - | chr4.4:145840-145859 | None:intergenic | 15.0% |
| !! | AAATAAGTGTACAAAAAAAC+AGG | + | chr4.4:144833-144852 | MS.gene040102:intron | 20.0% |
| !! | ACATGAACTTATAGTTAATT+TGG | - | chr4.4:145272-145291 | None:intergenic | 20.0% |
| !! | ATAAGATTTGAAGAATTGAA+GGG | - | chr4.4:142488-142507 | None:intergenic | 20.0% |
| !! | TTTGCATAAATTTAGTGATA+GGG | + | chr4.4:145221-145240 | MS.gene040102:intron | 20.0% |
| !!! | AAAACAGCAATATTTTAGTT+TGG | - | chr4.4:143410-143429 | None:intergenic | 20.0% |
| !!! | AAACTATTAGAATTTGAGAT+TGG | - | chr4.4:143893-143912 | None:intergenic | 20.0% |
| !!! | AACTATTAGAATTTGAGATT+GGG | - | chr4.4:143892-143911 | None:intergenic | 20.0% |
| !!! | GCAGTTCATATAAAAATTTT+AGG | - | chr4.4:144548-144567 | None:intergenic | 20.0% |
| !!! | TTTTGCATAAATTTAGTGAT+AGG | + | chr4.4:145220-145239 | MS.gene040102:intron | 20.0% |
| !!! | TTTTTTAGATGGAATTTGTT+AGG | + | chr4.4:144888-144907 | MS.gene040102:intron | 20.0% |
| ! | ACAAAACAAGAGATTGAAAT+GGG | - | chr4.4:142572-142591 | None:intergenic | 25.0% |
| ! | AGAAAAAAATTGTGTTTGTG+TGG | - | chr4.4:143001-143020 | None:intergenic | 25.0% |
| ! | AGAATGAATTGTAGGAAATT+AGG | - | chr4.4:144174-144193 | None:intergenic | 25.0% |
| ! | AGTTGATCTATTTAGTTAAG+AGG | + | chr4.4:145478-145497 | MS.gene040102:intron | 25.0% |
| ! | GAAAGGTCTGATAAAATTTA+GGG | + | chr4.4:145095-145114 | MS.gene040102:intron | 25.0% |
| ! | GATAAGATTTGAAGAATTGA+AGG | - | chr4.4:142489-142508 | None:intergenic | 25.0% |
| ! | TGAAAGGTCTGATAAAATTT+AGG | + | chr4.4:145094-145113 | MS.gene040102:intron | 25.0% |
| ! | TTAAGGGAAGAAAAATAATC+AGG | - | chr4.4:145432-145451 | None:intergenic | 25.0% |
| !! | ACAAATCAACATATTTTGCT+GGG | + | chr4.4:143975-143994 | MS.gene040102:intron | 25.0% |
| !! | CTATTGGTAATAAATTGTCA+TGG | + | chr4.4:145063-145082 | MS.gene040102:intron | 25.0% |
| !!! | ACTATGAGAAAGTTTTTTCA+AGG | - | chr4.4:143920-143939 | None:intergenic | 25.0% |
| !!! | ATATTTTTGTTGCCATTACT+TGG | + | chr4.4:145517-145536 | MS.gene040102:intron | 25.0% |
| !!! | ATCATCGTATTTTGTTTGTA+GGG | + | chr4.4:144605-144624 | MS.gene040102:intron | 25.0% |
| !!! | TAGACAGTATTTAACTTTTG+AGG | - | chr4.4:145377-145396 | None:intergenic | 25.0% |
| !!! | TATCATCGTATTTTGTTTGT+AGG | + | chr4.4:144604-144623 | MS.gene040102:intron | 25.0% |
| !!! | TCTTATATTTTTTACTGCAC+AGG | + | chr4.4:143245-143264 | MS.gene040102:intron | 25.0% |
| !!! | TGTTTTTGAAGTGCATATAT+AGG | - | chr4.4:144237-144256 | None:intergenic | 25.0% |
| AAAATAATCAGGTGGCAAAA+AGG | - | chr4.4:145421-145440 | None:intergenic | 30.0% | |
| AAAATTGTGTTTGTGTGGAA+TGG | - | chr4.4:142996-143015 | None:intergenic | 30.0% | |
| AAATTTAGTGATAGGGTGTA+GGG | + | chr4.4:145228-145247 | MS.gene040102:intron | 30.0% | |
| AATTAAGTGACCTATTGCAT+TGG | + | chr4.4:145571-145590 | MS.gene040102:intron | 30.0% | |
| ACAAAATACGAGGATTATCA+AGG | + | chr4.4:143072-143091 | MS.gene040102:CDS | 30.0% | |
| ATCAAATATCTGGACTTAGT+AGG | + | chr4.4:143551-143570 | MS.gene040102:intron | 30.0% | |
| ATGCTGAAAAATTACTCTCA+AGG | - | chr4.4:145328-145347 | None:intergenic | 30.0% | |
| ATTGATCTGGAAGAAAGAAA+TGG | - | chr4.4:143033-143052 | None:intergenic | 30.0% | |
| CAAAATACGAGGATTATCAA+GGG | + | chr4.4:143073-143092 | MS.gene040102:CDS | 30.0% | |
| CACAAAACAAGAGATTGAAA+TGG | - | chr4.4:142573-142592 | None:intergenic | 30.0% | |
| CAGACAAAAATACACTTGAA+AGG | + | chr4.4:145889-145908 | MS.gene040102:CDS | 30.0% | |
| CTATCTCAACCTTATAAAAC+CGG | - | chr4.4:143868-143887 | None:intergenic | 30.0% | |
| CTGATAACTTCAGCTTATTT+GGG | + | chr4.4:144057-144076 | MS.gene040102:intron | 30.0% | |
| CTTAATAAAAACACTAGCTC+TGG | - | chr4.4:142895-142914 | None:intergenic | 30.0% | |
| GTTGGGTAACAATAGATTTA+GGG | + | chr4.4:143948-143967 | MS.gene040102:intron | 30.0% | |
| TAAATTTAGTGATAGGGTGT+AGG | + | chr4.4:145227-145246 | MS.gene040102:intron | 30.0% | |
| TAGATGTTGAACTAAATGCA+TGG | - | chr4.4:145046-145065 | None:intergenic | 30.0% | |
| TCATCATTATCATCAACATC+AGG | - | chr4.4:142636-142655 | None:intergenic | 30.0% | |
| TCTTCAAATCTTATCTTCTC+AGG | + | chr4.4:142494-142513 | MS.gene040102:CDS | 30.0% | |
| TGAATGTGGATTCAACAAAA+TGG | - | chr4.4:142856-142875 | None:intergenic | 30.0% | |
| TGACTAGAAGAATGAATTGT+AGG | - | chr4.4:144182-144201 | None:intergenic | 30.0% | |
| TGCTGAAAAATTACTCTCAA+GGG | - | chr4.4:145327-145346 | None:intergenic | 30.0% | |
| TGTTGGGTAACAATAGATTT+AGG | + | chr4.4:143947-143966 | MS.gene040102:intron | 30.0% | |
| TTATGATGAAGAGATTGCTA+TGG | + | chr4.4:143154-143173 | MS.gene040102:CDS | 30.0% | |
| TTGGCAATTTCAATTCCATA+AGG | - | chr4.4:144365-144384 | None:intergenic | 30.0% | |
| TTGGGTAACAATAGATTTAG+GGG | + | chr4.4:143949-143968 | MS.gene040102:intron | 30.0% | |
| ! | ATAGGATCAGAGGTATAATA+TGG | - | chr4.4:144440-144459 | None:intergenic | 30.0% |
| ! | CGTGTGAAATGGAATTTTAA+AGG | + | chr4.4:144031-144050 | MS.gene040102:intron | 30.0% |
| ! | GACAAATCAACATATTTTGC+TGG | + | chr4.4:143974-143993 | MS.gene040102:intron | 30.0% |
| ! | GCATTTAGTTCAACATCTAT+TGG | + | chr4.4:145047-145066 | MS.gene040102:intron | 30.0% |
| ! | TATAAAAATTTTAGGCTGCG+AGG | - | chr4.4:144540-144559 | None:intergenic | 30.0% |
| !! | TCAAGTTGAATACCAAGTAA+TGG | - | chr4.4:145532-145551 | None:intergenic | 30.0% |
| !! | TCATCGTATTTTGTTTGTAG+GGG | + | chr4.4:144606-144625 | MS.gene040102:intron | 30.0% |
| !! | TCTCATAGTTAGTCTTTGTT+GGG | + | chr4.4:143931-143950 | MS.gene040102:intron | 30.0% |
| !! | TTCTCATAGTTAGTCTTTGT+TGG | + | chr4.4:143930-143949 | MS.gene040102:intron | 30.0% |
| !!! | ATCTCTTGTTTTGTGTAGTT+TGG | + | chr4.4:142578-142597 | MS.gene040102:intron | 30.0% |
| !!! | TCTCTTGTTTTGTGTAGTTT+GGG | + | chr4.4:142579-142598 | MS.gene040102:intron | 30.0% |
| AAAAAAACAGGCAAGAGGAT+AGG | + | chr4.4:144845-144864 | MS.gene040102:intron | 35.0% | |
| AAATAGATGTGTCCTGAACA+CGG | + | chr4.4:143809-143828 | MS.gene040102:intron | 35.0% | |
| AACCTAATACAGCAAATGAG+CGG | + | chr4.4:144924-144943 | MS.gene040102:intron | 35.0% | |
| AAGAAAACTAGAACATGGCA+AGG | - | chr4.4:144086-144105 | None:intergenic | 35.0% | |
| AAGGGATTGACATACGAATA+AGG | + | chr4.4:144758-144777 | MS.gene040102:intron | 35.0% | |
| ACTACTTGAAATCCCTGTTT+AGG | + | chr4.4:144573-144592 | MS.gene040102:intron | 35.0% | |
| ACTGCAAGAAAACTAGAACA+TGG | - | chr4.4:144091-144110 | None:intergenic | 35.0% | |
| AGCAATTCAACGACAAGATT+TGG | - | chr4.4:144384-144403 | None:intergenic | 35.0% | |
| AGGGAAGAAAAATAATCAGG+TGG | - | chr4.4:145429-145448 | None:intergenic | 35.0% | |
| ATGACCAGTGTTAGATATTC+TGG | + | chr4.4:144657-144676 | MS.gene040102:intron | 35.0% | |
| ATGGAACAAGTTAGGAGAAA+TGG | - | chr4.4:142977-142996 | None:intergenic | 35.0% | |
| CAAACCAGAATATCTAACAC+TGG | - | chr4.4:144664-144683 | None:intergenic | 35.0% | |
| CAAATGAGCGGGAAAATATT+AGG | + | chr4.4:144936-144955 | MS.gene040102:intron | 35.0% | |
| CAACAGGATAGGAATGAAAT+TGG | + | chr4.4:144788-144807 | MS.gene040102:intron | 35.0% | |
| CAAGACAGATAGATCATAGA+TGG | - | chr4.4:143530-143549 | None:intergenic | 35.0% | |
| CAAGAGGATAGGAATGAAAT+TGG | + | chr4.4:144856-144875 | MS.gene040102:intron | 35.0% | |
| CAATTTCATTCCTATCCTGT+TGG | - | chr4.4:144790-144809 | None:intergenic | 35.0% | |
| CAGATAGATCATAGATGGAT+AGG | - | chr4.4:143525-143544 | None:intergenic | 35.0% | |
| CATCTATGATCTATCTGTCT+TGG | + | chr4.4:143528-143547 | MS.gene040102:intron | 35.0% | |
| CATTTAAAAGGGCAAGTGAT+TGG | + | chr4.4:145597-145616 | MS.gene040102:intron | 35.0% | |
| CGCTTGATCAAAATTACCTT+GGG | - | chr4.4:142814-142833 | None:intergenic | 35.0% | |
| GAGTCTATCCAAGTTCTATT+TGG | + | chr4.4:143720-143739 | MS.gene040102:intron | 35.0% | |
| GATAAACACAGACCTAAACA+GGG | - | chr4.4:144588-144607 | None:intergenic | 35.0% | |
| GATTGCTATGGCACTTAAAA+AGG | + | chr4.4:143166-143185 | MS.gene040102:CDS | 35.0% | |
| GATTTGAAGAATTGAAGGGA+AGG | - | chr4.4:142484-142503 | None:intergenic | 35.0% | |
| GCTGATAACTTCAGCTTATT+TGG | + | chr4.4:144056-144075 | MS.gene040102:intron | 35.0% | |
| TAATCTCGTCTGAAGAAAGT+AGG | - | chr4.4:143199-143218 | None:intergenic | 35.0% | |
| TATAGTATGCGCATCAGTTA+TGG | - | chr4.4:143441-143460 | None:intergenic | 35.0% | |
| TATTCACTCTGTTAGTGAAC+TGG | + | chr4.4:145620-145639 | MS.gene040102:CDS | 35.0% | |
| TCAAGTAACTGAAGACCAAA+GGG | + | chr4.4:142746-142765 | MS.gene040102:CDS | 35.0% | |
| TCTGTCTTGGATCAAATATC+TGG | + | chr4.4:143541-143560 | MS.gene040102:intron | 35.0% | |
| TCTTCTAGTCATCAAAGTTC+CGG | + | chr4.4:144191-144210 | MS.gene040102:intron | 35.0% | |
| TGATAAACACAGACCTAAAC+AGG | - | chr4.4:144589-144608 | None:intergenic | 35.0% | |
| TGCATCTTTATCCTGCAAAA+AGG | - | chr4.4:144300-144319 | None:intergenic | 35.0% | |
| TGTACAAAAAAACAGGCAAG+AGG | + | chr4.4:144840-144859 | MS.gene040102:intron | 35.0% | |
| TGTCGTTGAATTGCTTATTC+TGG | + | chr4.4:144389-144408 | MS.gene040102:intron | 35.0% | |
| TTAAATGCCACCAATGCAAT+AGG | - | chr4.4:145584-145603 | None:intergenic | 35.0% | |
| TTCACCACTTTATACAAGCT+TGG | + | chr4.4:145728-145747 | MS.gene040102:CDS | 35.0% | |
| TTCTGTACTTTACTGCAACA+TGG | + | chr4.4:145685-145704 | MS.gene040102:CDS | 35.0% | |
| TTTCAATTCCATAAGGCAGA+AGG | - | chr4.4:144358-144377 | None:intergenic | 35.0% | |
| ! | AATCAACATATTTTGCTGGG+CGG | + | chr4.4:143978-143997 | MS.gene040102:intron | 35.0% |
| ! | AGTTGATATAGATAAGGCAG+TGG | + | chr4.4:145782-145801 | MS.gene040102:CDS | 35.0% |
| ! | CAGTGTTAGATATTCTGGTT+TGG | + | chr4.4:144662-144681 | MS.gene040102:intron | 35.0% |
| ! | CCTATGCTCCTCAATTTTAT+GGG | - | chr4.4:143283-143302 | None:intergenic | 35.0% |
| ! | CTTACTTGAGCTTCATTTTG+TGG | - | chr4.4:143366-143385 | None:intergenic | 35.0% |
| ! | GGGTCAAATATCTAGTTTGA+TGG | - | chr4.4:144715-144734 | None:intergenic | 35.0% |
| ! | TCATTTTGTGGTTGCTTCTT+CGG | - | chr4.4:143354-143373 | None:intergenic | 35.0% |
| ! | TCCTATGCTCCTCAATTTTA+TGG | - | chr4.4:143284-143303 | None:intergenic | 35.0% |
| ! | TCCTCAATTTTATGGGCATT+TGG | - | chr4.4:143276-143295 | None:intergenic | 35.0% |
| ! | TCCTCGTATTTTGTATCCTT+TGG | - | chr4.4:143066-143085 | None:intergenic | 35.0% |
| ! | TGCATTGGTGGCATTTAAAA+GGG | + | chr4.4:145586-145605 | MS.gene040102:intron | 35.0% |
| ! | TTGCATTGGTGGCATTTAAA+AGG | + | chr4.4:145585-145604 | MS.gene040102:intron | 35.0% |
| ! | TTGTGGCAATGCTTACATTT+TGG | + | chr4.4:145137-145156 | MS.gene040102:intron | 35.0% |
| !! | AATAAAAACACTAGCTCTGG+TGG | - | chr4.4:142892-142911 | None:intergenic | 35.0% |
| !! | GCATTGTCTGCTTTAAAAGA+TGG | + | chr4.4:144317-144336 | MS.gene040102:CDS | 35.0% |
| !!! | TGTTCTAGTTTTCTTGCAGT+AGG | + | chr4.4:144091-144110 | MS.gene040102:intron | 35.0% |
| AAAGAGATTGACAGTGTGGT+GGG | + | chr4.4:145864-145883 | MS.gene040102:CDS | 40.0% | |
| AACCACTCTCTGATACTTCT+CGG | - | chr4.4:145754-145773 | None:intergenic | 40.0% | |
| AAGGATATAGCCAACAGGAT+AGG | + | chr4.4:144777-144796 | MS.gene040102:intron | 40.0% | |
| AATAGATGTGTCCTGAACAC+GGG | + | chr4.4:143810-143829 | MS.gene040102:intron | 40.0% | |
| AATGACCCTCCTCAAAAGAT+GGG | + | chr4.4:142711-142730 | MS.gene040102:CDS | 40.0% | |
| ACCTAATACAGCAAATGAGC+GGG | + | chr4.4:144925-144944 | MS.gene040102:intron | 40.0% | |
| AGGATTATCAAGGGCTATGT+TGG | + | chr4.4:143082-143101 | MS.gene040102:CDS | 40.0% | |
| AGTGGTGAAATGTAACGACA+AGG | - | chr4.4:145717-145736 | None:intergenic | 40.0% | |
| ATGCGCATCAGTTATGGATA+GGG | - | chr4.4:143435-143454 | None:intergenic | 40.0% | |
| ATGGAAGAAACGAACCTTCA+AGG | - | chr4.4:142958-142977 | None:intergenic | 40.0% | |
| ATGTCTTTCCTTCTGCCTTA+TGG | + | chr4.4:144347-144366 | MS.gene040102:intron | 40.0% | |
| CCCTTTACAATAAACCTGTG+CGG | - | chr4.4:144743-144762 | None:intergenic | 40.0% | |
| CCGCACAGGTTTATTGTAAA+GGG | + | chr4.4:144740-144759 | MS.gene040102:intron | 40.0% | |
| CCTTATAAAACCGGCATGAA+AGG | - | chr4.4:143859-143878 | None:intergenic | 40.0% | |
| CGAATAAGGATATAGCCAAC+AGG | + | chr4.4:144772-144791 | MS.gene040102:intron | 40.0% | |
| CTCAAGTAACTGAAGACCAA+AGG | + | chr4.4:142745-142764 | MS.gene040102:CDS | 40.0% | |
| GAGACTCTTAACAGAAACTC+AGG | - | chr4.4:143619-143638 | None:intergenic | 40.0% | |
| GATAAAACGCAAACCATGCT+TGG | + | chr4.4:145170-145189 | MS.gene040102:intron | 40.0% | |
| GCAATTGATGCTATATCCCA+AGG | + | chr4.4:142795-142814 | MS.gene040102:CDS | 40.0% | |
| GCATAGAGTATGGATGAATG+TGG | - | chr4.4:142870-142889 | None:intergenic | 40.0% | |
| GCCAAAGGATACAAAATACG+AGG | + | chr4.4:143062-143081 | MS.gene040102:CDS | 40.0% | |
| GCCAAATGCCCATAAAATTG+AGG | + | chr4.4:143272-143291 | MS.gene040102:CDS | 40.0% | |
| GCGCTTGATCAAAATTACCT+TGG | - | chr4.4:142815-142834 | None:intergenic | 40.0% | |
| GGATTATCAAGGGCTATGTT+GGG | + | chr4.4:143083-143102 | MS.gene040102:CDS | 40.0% | |
| GGTAACAATAGATTTAGGGG+TGG | + | chr4.4:143952-143971 | MS.gene040102:intron | 40.0% | |
| GTGGTGAAATGTAACGACAA+GGG | - | chr4.4:145716-145735 | None:intergenic | 40.0% | |
| TAAGTGACCTATTGCATTGG+TGG | + | chr4.4:145574-145593 | MS.gene040102:intron | 40.0% | |
| TACTTTACTGCAACATGGTG+TGG | + | chr4.4:145690-145709 | MS.gene040102:CDS | 40.0% | |
| TATCCTGCAAAAAGGTCATG+AGG | - | chr4.4:144292-144311 | None:intergenic | 40.0% | |
| TATGCGCATCAGTTATGGAT+AGG | - | chr4.4:143436-143455 | None:intergenic | 40.0% | |
| TCACTTATAAACCCGTGTTC+AGG | - | chr4.4:143824-143843 | None:intergenic | 40.0% | |
| TCCGCACAGGTTTATTGTAA+AGG | + | chr4.4:144739-144758 | MS.gene040102:intron | 40.0% | |
| TCTTCAGTTACTTGAGCAGA+GGG | - | chr4.4:142741-142760 | None:intergenic | 40.0% | |
| TGAACGCTTACGAAAGCAAA+AGG | + | chr4.4:143311-143330 | MS.gene040102:CDS | 40.0% | |
| TGAACTAAATGCATGGAGCA+AGG | - | chr4.4:145039-145058 | None:intergenic | 40.0% | |
| TGATGCGCATACTATACTAC+TGG | + | chr4.4:143445-143464 | MS.gene040102:intron | 40.0% | |
| TGTCATGGCTGAAAGATGAA+AGG | + | chr4.4:145078-145097 | MS.gene040102:intron | 40.0% | |
| TGTGTGGAATGGAACAAGTT+AGG | - | chr4.4:142985-143004 | None:intergenic | 40.0% | |
| TTCAAATCACTGACCAAGCA+TGG | - | chr4.4:145186-145205 | None:intergenic | 40.0% | |
| ! | ATTCCTCATGACCTTTTTGC+AGG | + | chr4.4:144286-144305 | MS.gene040102:intron | 40.0% |
| ! | CCCATAAAATTGAGGAGCAT+AGG | + | chr4.4:143280-143299 | MS.gene040102:CDS | 40.0% |
| ! | GAAGGAGTATGAAGAAGAGA+AGG | - | chr4.4:142466-142485 | None:intergenic | 40.0% |
| !! | AGTTTGTTGCTCGTGTGAAA+TGG | + | chr4.4:144020-144039 | MS.gene040102:intron | 40.0% |
| !! | TTCCTTTGTTTGCTGTGTTG+TGG | + | chr4.4:145120-145139 | MS.gene040102:intron | 40.0% |
| !!! | CCTTTCATGCCGGTTTTATA+AGG | + | chr4.4:143856-143875 | MS.gene040102:intron | 40.0% |
| !!! | GGTGCGATGCATTTTTTAGA+TGG | + | chr4.4:144877-144896 | MS.gene040102:intron | 40.0% |
| AAGAGATTGACAGTGTGGTG+GGG | + | chr4.4:145865-145884 | MS.gene040102:CDS | 45.0% | |
| AGGAAGATTGCTCAACATGC+CGG | + | chr4.4:145909-145928 | MS.gene040102:CDS | 45.0% | |
| AGTCATCAAAGTTCCGGCAA+TGG | + | chr4.4:144197-144216 | MS.gene040102:intron | 45.0% | |
| AGTGTCAGAATCACGGATAG+CGG | - | chr4.4:142934-142953 | None:intergenic | 45.0% | |
| ATAGTTGTGCAGCATCCCTT+TGG | - | chr4.4:142764-142783 | None:intergenic | 45.0% | |
| ATCAACATCAGGTTCCGTCT+TGG | - | chr4.4:142625-142644 | None:intergenic | 45.0% | |
| ATCAATCCAGACTCAGCCAA+AGG | + | chr4.4:143047-143066 | MS.gene040102:CDS | 45.0% | |
| CAAAGAGATTGACAGTGTGG+TGG | + | chr4.4:145863-145882 | MS.gene040102:CDS | 45.0% | |
| CAACTTCTGCGTGTCATGAA+CGG | - | chr4.4:144475-144494 | None:intergenic | 45.0% | |
| CAAGTTCTATTTGGCCACTC+GGG | + | chr4.4:143729-143748 | MS.gene040102:intron | 45.0% | |
| CAATGACCCTCCTCAAAAGA+TGG | + | chr4.4:142710-142729 | MS.gene040102:CDS | 45.0% | |
| CATACCCTAACACCCAAGAT+TGG | - | chr4.4:143770-143789 | None:intergenic | 45.0% | |
| CCAAGTTCTATTTGGCCACT+CGG | + | chr4.4:143728-143747 | MS.gene040102:intron | 45.0% | |
| CTGTCCAATCTTGGGTGTTA+GGG | + | chr4.4:143763-143782 | MS.gene040102:intron | 45.0% | |
| GCAATACTCACCTTTCATGC+CGG | + | chr4.4:143846-143865 | MS.gene040102:intron | 45.0% | |
| GTCTTCAGTTACTTGAGCAG+AGG | - | chr4.4:142742-142761 | None:intergenic | 45.0% | |
| TCAACATCAGGTTCCGTCTT+GGG | - | chr4.4:142624-142643 | None:intergenic | 45.0% | |
| TCAAGGCAGTGTCAGAATCA+CGG | - | chr4.4:142941-142960 | None:intergenic | 45.0% | |
| TCGGCCAAGCTTGTATAAAG+TGG | - | chr4.4:145735-145754 | None:intergenic | 45.0% | |
| TGATTCTGACACTGCCTTGA+AGG | + | chr4.4:142941-142960 | MS.gene040102:CDS | 45.0% | |
| TGCCACAACACAGCAAACAA+AGG | - | chr4.4:145125-145144 | None:intergenic | 45.0% | |
| TGGCAAAGAGATTGACAGTG+TGG | + | chr4.4:145860-145879 | MS.gene040102:CDS | 45.0% | |
| TTAGTGATAGGGTGTAGGGA+AGG | + | chr4.4:145232-145251 | MS.gene040102:intron | 45.0% | |
| TTGTATCCTTTGGCTGAGTC+TGG | - | chr4.4:143056-143075 | None:intergenic | 45.0% | |
| ! | AAAATTTTAGGCTGCGAGGC+AGG | - | chr4.4:144536-144555 | None:intergenic | 45.0% |
| ! | ATTTTGCTGGGCGGCATTTT+GGG | + | chr4.4:143987-144006 | MS.gene040102:intron | 45.0% |
| ! | TATTTTGCTGGGCGGCATTT+TGG | + | chr4.4:143986-144005 | MS.gene040102:intron | 45.0% |
| !! | GATCACCCATCTTTTGAGGA+GGG | - | chr4.4:142719-142738 | None:intergenic | 45.0% |
| !! | TCCCGCTCATTTGCTGTATT+AGG | - | chr4.4:144929-144948 | None:intergenic | 45.0% |
| !! | TTTTGAGGAGGGTCATTGTC+AGG | - | chr4.4:142708-142727 | None:intergenic | 45.0% |
| AACACCCAAGATTGGACAGC+TGG | - | chr4.4:143762-143781 | None:intergenic | 50.0% | |
| AATAAACCTGTGCGGAGCAC+GGG | - | chr4.4:144735-144754 | None:intergenic | 50.0% | |
| AGAGATTGACAGTGTGGTGG+GGG | + | chr4.4:145866-145885 | MS.gene040102:CDS | 50.0% | |
| AGCCAACAACTTGCCATTGC+CGG | - | chr4.4:144213-144232 | None:intergenic | 50.0% | |
| ATCAGGTTCCGTCTTGGGTT+GGG | - | chr4.4:142619-142638 | None:intergenic | 50.0% | |
| CAATAAACCTGTGCGGAGCA+CGG | - | chr4.4:144736-144755 | None:intergenic | 50.0% | |
| CCGAGTGGCCAAATAGAACT+TGG | - | chr4.4:143731-143750 | None:intergenic | 50.0% | |
| GCTGTCCAATCTTGGGTGTT+AGG | + | chr4.4:143762-143781 | MS.gene040102:intron | 50.0% | |
| TGAGGCGGTAATAGGATCAG+AGG | - | chr4.4:144450-144469 | None:intergenic | 50.0% | |
| TGGCTGAGTCTGGATTGATC+TGG | - | chr4.4:143046-143065 | None:intergenic | 50.0% | |
| TTCCGGCAATGGCAAGTTGT+TGG | + | chr4.4:144208-144227 | MS.gene040102:intron | 50.0% | |
| ! | AGCTCTGGTGGCATAGAGTA+TGG | - | chr4.4:142880-142899 | None:intergenic | 50.0% |
| ! | GAATCACGGATAGCGGCATT+TGG | - | chr4.4:142927-142946 | None:intergenic | 50.0% |
| ! | GAGGGATCACCCATCTTTTG+AGG | - | chr4.4:142723-142742 | None:intergenic | 50.0% |
| !! | GCGGCATTTTGGGTCTTAGT+TGG | + | chr4.4:143997-144016 | MS.gene040102:intron | 50.0% |
| !! | GGATCACCCATCTTTTGAGG+AGG | - | chr4.4:142720-142739 | None:intergenic | 50.0% |
| ACGCTCCAGCTGTCCAATCT+TGG | + | chr4.4:143754-143773 | MS.gene040102:intron | 55.0% | |
| CAAGGGCTATGTTGGGACTC+TGG | + | chr4.4:143090-143109 | MS.gene040102:CDS | 55.0% | |
| CATCAGGTTCCGTCTTGGGT+TGG | - | chr4.4:142620-142639 | None:intergenic | 55.0% | |
| CGCTCCAGCTGTCCAATCTT+GGG | + | chr4.4:143755-143774 | MS.gene040102:intron | 55.0% | |
| GAACGGCATGAGGCGGTAAT+AGG | - | chr4.4:144458-144477 | None:intergenic | 55.0% | |
| GTGTCATGAACGGCATGAGG+CGG | - | chr4.4:144465-144484 | None:intergenic | 55.0% | |
| TGCGTGTCATGAACGGCATG+AGG | - | chr4.4:144468-144487 | None:intergenic | 55.0% | |
| ! | TCAGGTTCCGTCTTGGGTTG+GGG | - | chr4.4:142618-142637 | None:intergenic | 55.0% |
| !! | GGCCGAGAAGTATCAGAGAG+TGG | + | chr4.4:145749-145768 | MS.gene040102:CDS | 55.0% |
| ATTTGACCCGTGCTCCGCAC+AGG | + | chr4.4:144726-144745 | MS.gene040102:intron | 60.0% | |
| CATCCCTCCCCAACCCAAGA+CGG | + | chr4.4:142608-142627 | MS.gene040102:CDS | 60.0% | |
| !! | GTTCCGTCTTGGGTTGGGGA+GGG | - | chr4.4:142614-142633 | None:intergenic | 60.0% |
| CAGCTGGAGCGTAACCCGAG+TGG | - | chr4.4:143746-143765 | None:intergenic | 65.0% | |
| CAGTGGATGTCGCAGCACGC+TGG | + | chr4.4:145799-145818 | MS.gene040102:CDS | 65.0% | |
| !! | GGTTCCGTCTTGGGTTGGGG+AGG | - | chr4.4:142615-142634 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 142406 | 145941 | 142406 | ID=MS.gene040102 |
| chr4.4 | mRNA | 142406 | 145941 | 142406 | ID=MS.gene040102.t1;Parent=MS.gene040102 |
| chr4.4 | exon | 142406 | 142515 | 142406 | ID=MS.gene040102.t1.exon1;Parent=MS.gene040102.t1 |
| chr4.4 | CDS | 142406 | 142515 | 142406 | ID=cds.MS.gene040102.t1;Parent=MS.gene040102.t1 |
| chr4.4 | exon | 142596 | 142962 | 142596 | ID=MS.gene040102.t1.exon2;Parent=MS.gene040102.t1 |
| chr4.4 | CDS | 142596 | 142962 | 142596 | ID=cds.MS.gene040102.t1;Parent=MS.gene040102.t1 |
| chr4.4 | exon | 143047 | 143187 | 143047 | ID=MS.gene040102.t1.exon3;Parent=MS.gene040102.t1 |
| chr4.4 | CDS | 143047 | 143187 | 143047 | ID=cds.MS.gene040102.t1;Parent=MS.gene040102.t1 |
| chr4.4 | exon | 143267 | 143380 | 143267 | ID=MS.gene040102.t1.exon4;Parent=MS.gene040102.t1 |
| chr4.4 | CDS | 143267 | 143380 | 143267 | ID=cds.MS.gene040102.t1;Parent=MS.gene040102.t1 |
| chr4.4 | exon | 144308 | 144338 | 144308 | ID=MS.gene040102.t1.exon5;Parent=MS.gene040102.t1 |
| chr4.4 | CDS | 144308 | 144338 | 144308 | ID=cds.MS.gene040102.t1;Parent=MS.gene040102.t1 |
| chr4.4 | exon | 145607 | 145941 | 145607 | ID=MS.gene040102.t1.exon6;Parent=MS.gene040102.t1 |
| chr4.4 | CDS | 145607 | 145941 | 145607 | ID=cds.MS.gene040102.t1;Parent=MS.gene040102.t1 |
| Gene Sequence |
| Protein sequence |
