AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene073336

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene073336.t1 MTR_4g127120 98.513 269 4 0 1 269 75 343 0.0 536
MS.gene073336.t1 MTR_4g127120 35.119 168 106 2 16 182 20 185 6.94e-16 76.6
MS.gene073336.t1 MTR_2g038380 73.308 266 66 3 3 268 93 353 3.90e-134 383
MS.gene073336.t1 MTR_3g076990 49.239 197 100 0 4 200 251 447 6.61e-52 177
MS.gene073336.t1 MTR_3g076990 38.182 110 66 1 70 179 201 308 2.51e-11 63.9
MS.gene073336.t1 MTR_4g105010 44.344 221 113 2 4 214 254 474 5.15e-49 169
MS.gene073336.t1 MTR_4g105010 37.963 108 65 1 72 179 206 311 7.91e-12 65.5
MS.gene073336.t1 MTR_5g032910 45.361 194 106 0 4 197 201 394 5.69e-43 152
MS.gene073336.t1 MTR_8g072950 39.111 225 132 2 4 224 340 563 1.60e-38 142
MS.gene073336.t1 MTR_8g072950 39.524 210 108 4 9 202 253 459 6.54e-24 100
MS.gene073336.t1 MTR_5g024780 40.465 215 121 2 4 212 351 564 2.83e-38 141
MS.gene073336.t1 MTR_5g024780 39.181 171 101 2 9 179 264 431 2.48e-26 107
MS.gene073336.t1 MTR_4g098530 37.900 219 112 2 1 196 244 461 4.94e-35 131
MS.gene073336.t1 MTR_4g098530 39.080 174 103 2 9 182 183 353 2.02e-23 99.4
MS.gene073336.t1 MTR_8g062140 36.145 166 102 4 11 174 807 970 3.02e-15 75.9
MS.gene073336.t1 MTR_8g062140 32.275 189 101 4 7 170 686 872 2.01e-12 67.4
MS.gene073336.t1 MTR_8g062140 34.066 182 116 4 4 183 753 932 8.13e-11 62.8
MS.gene073336.t1 MTR_3g023830 33.523 176 111 4 3 176 48 219 4.29e-15 73.6
MS.gene073336.t1 MTR_3g023830 33.333 150 96 3 34 182 32 178 5.14e-13 67.8
MS.gene073336.t1 MTR_2g079560 35.961 203 121 6 1 198 359 557 1.44e-14 73.6
MS.gene073336.t1 MTR_2g079560 35.961 203 121 6 1 198 429 627 1.71e-14 73.6
MS.gene073336.t1 MTR_2g079560 29.808 208 119 4 1 184 118 322 1.11e-12 68.2
MS.gene073336.t1 MTR_2g079560 35.961 203 121 6 1 198 384 582 2.18e-14 73.2
MS.gene073336.t1 MTR_2g079560 30.097 206 117 4 1 182 71 273 1.63e-12 67.4
MS.gene073336.t1 MTR_2g079560 35.961 203 121 6 1 198 382 580 2.21e-14 73.2
MS.gene073336.t1 MTR_2g079560 30.097 206 117 4 1 182 71 273 1.67e-12 67.4
MS.gene073336.t1 MTR_8g062130 34.302 172 104 4 11 178 848 1014 6.22e-14 72.0
MS.gene073336.t1 MTR_8g062130 35.714 168 105 3 4 170 794 959 1.07e-12 68.2
MS.gene073336.t1 MTR_8g062130 33.155 187 97 5 9 170 729 912 1.57e-12 67.8
MS.gene073336.t1 MTR_5g085700 37.356 174 103 6 13 182 149 320 8.16e-14 71.6
MS.gene073336.t1 MTR_7g059285 33.971 209 127 8 14 217 88 290 1.05e-13 71.2
MS.gene073336.t1 MTR_3g093930 33.679 193 114 9 3 184 306 495 2.81e-13 70.1
MS.gene073336.t1 MTR_1g101250 33.166 199 125 7 1 194 508 703 2.98e-13 70.1
MS.gene073336.t1 MTR_3g465570 30.978 184 118 5 11 189 165 344 7.90e-13 68.2
MS.gene073336.t1 MTR_1g039220 33.908 174 110 5 14 183 118 290 9.55e-13 68.6
MS.gene073336.t1 MTR_1g039220 34.783 184 112 8 3 180 130 311 2.43e-11 64.3
MS.gene073336.t1 MTR_5g045910 36.207 174 106 5 25 194 105 277 1.14e-12 68.2
MS.gene073336.t1 MTR_7g067530 33.766 231 118 12 3 200 335 563 1.55e-12 67.8
MS.gene073336.t1 MTR_1g040545 34.343 198 101 8 14 183 113 309 1.85e-12 67.4
MS.gene073336.t1 MTR_1g040615 34.225 187 115 8 3 183 149 333 2.59e-12 67.4
MS.gene073336.t1 MTR_8g041100 44.094 127 65 6 4 125 234 359 5.82e-12 65.9
MS.gene073336.t1 MTR_8g047210 35.519 183 110 8 4 180 127 307 1.29e-11 65.1
MS.gene073336.t1 MTR_3g113140 33.516 182 115 6 4 180 352 532 1.41e-11 65.1
MS.gene073336.t1 MTR_1g102500 34.946 186 112 9 4 183 114 296 1.70e-11 64.7
MS.gene073336.t1 MTR_1g097580 34.270 178 110 7 11 182 81 257 1.98e-11 64.3
MS.gene073336.t1 MTR_2g055360 34.637 179 111 6 13 187 228 404 2.27e-11 64.3
MS.gene073336.t1 MTR_8g047220 34.973 183 111 8 4 180 142 322 2.46e-11 64.3
MS.gene073336.t1 MTR_8g047220 35.484 186 112 8 1 180 163 346 7.77e-11 62.8
MS.gene073336.t1 MTR_5g082290 36.145 166 96 9 14 172 161 323 3.19e-11 63.9
MS.gene073336.t1 MTR_4g130390 32.044 181 116 7 3 177 382 561 5.72e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene073336.t1 AT2G19330 70.956 272 74 4 1 268 109 379 1.19e-134 385
MS.gene073336.t1 AT2G19330 35.404 161 101 2 23 182 61 219 1.09e-14 73.6
MS.gene073336.t1 AT4G26050 66.058 274 87 5 1 268 106 379 7.33e-122 353
MS.gene073336.t1 AT4G26050 34.375 160 102 2 24 182 59 216 7.95e-15 73.9
MS.gene073336.t1 AT4G29880 66.544 272 86 4 1 268 102 372 2.76e-115 336
MS.gene073336.t1 AT4G29880 36.025 161 100 2 23 182 54 212 3.12e-17 80.9
MS.gene073336.t1 AT3G11330 49.239 197 100 0 1 197 246 442 7.84e-52 176
MS.gene073336.t1 AT3G11330 44.211 95 51 1 104 198 210 302 4.56e-11 63.2
MS.gene073336.t1 AT5G05850 48.223 197 102 0 1 197 252 448 1.74e-48 167
MS.gene073336.t1 AT3G26500 43.979 191 107 0 4 194 211 401 5.63e-46 160
MS.gene073336.t1 AT3G26500 35.638 188 110 6 39 225 154 331 1.66e-19 87.8
MS.gene073336.t1 AT1G12970 43.979 191 107 0 4 194 212 402 4.07e-45 158
MS.gene073336.t1 AT4G35470 41.981 212 119 2 4 212 320 530 2.18e-36 135
MS.gene073336.t1 AT4G35470 43.976 166 90 2 8 173 232 394 6.29e-24 100
MS.gene073336.t1 AT2G17440 39.535 215 126 2 4 215 304 517 3.78e-35 132
MS.gene073336.t1 AT2G17440 39.855 138 77 3 45 179 204 338 6.47e-12 65.9
MS.gene073336.t1 AT4G35470 42.246 187 107 1 4 190 320 505 4.58e-33 126
MS.gene073336.t1 AT4G35470 43.976 166 90 2 8 173 232 394 6.31e-24 100
MS.gene073336.t1 AT4G35470 32.283 127 83 2 1 125 363 488 4.53e-13 69.3
MS.gene073336.t1 AT3G15410 35.519 183 114 3 1 182 76 255 9.74e-19 85.9
MS.gene073336.t1 AT3G15410 32.589 224 140 5 9 231 61 274 3.89e-18 84.3
MS.gene073336.t1 AT3G15410 31.776 214 118 4 11 198 376 587 5.19e-15 75.1
MS.gene073336.t1 AT3G15410 31.868 182 121 2 1 182 122 300 1.23e-12 67.8
MS.gene073336.t1 AT3G15410 35.519 183 114 3 1 182 70 249 1.05e-18 85.9
MS.gene073336.t1 AT3G15410 32.589 224 140 5 9 231 55 268 4.42e-18 84.0
MS.gene073336.t1 AT3G15410 31.776 214 118 4 11 198 370 581 5.99e-15 74.7
MS.gene073336.t1 AT3G15410 31.868 182 121 2 1 182 116 294 1.22e-12 67.8
MS.gene073336.t1 AT2G30105 32.812 192 120 5 3 189 133 320 1.71e-15 75.9
MS.gene073336.t1 AT5G07910 32.065 184 119 4 3 184 49 228 4.24e-15 73.6
MS.gene073336.t1 AT5G07910 32.738 168 90 4 34 179 33 199 1.59e-11 63.5
MS.gene073336.t1 AT1G27180 32.432 185 117 6 11 192 927 1106 5.18e-14 72.4
MS.gene073336.t1 AT1G27180 32.432 185 117 6 11 192 765 944 5.47e-14 72.0
MS.gene073336.t1 AT1G27180 32.432 185 117 6 11 192 765 944 5.82e-14 72.0
MS.gene073336.t1 AT2G33170 32.456 228 121 10 4 200 90 315 5.93e-14 72.0
MS.gene073336.t1 AT2G33170 32.456 228 121 10 4 200 90 315 5.93e-14 72.0
MS.gene073336.t1 AT1G27180 32.432 185 117 6 11 192 763 942 6.44e-14 72.0
MS.gene073336.t1 AT1G27180 32.432 185 117 6 11 192 763 942 6.44e-14 72.0
MS.gene073336.t1 AT1G27180 32.432 185 117 6 11 192 589 768 8.57e-14 71.6
MS.gene073336.t1 AT1G27180 32.432 185 117 6 11 192 589 768 8.57e-14 71.6
MS.gene073336.t1 AT1G27180 32.432 185 117 6 11 192 589 768 8.57e-14 71.6
MS.gene073336.t1 AT3G24240 34.783 184 112 8 3 180 422 603 1.49e-12 67.8
MS.gene073336.t1 AT3G24240 34.104 173 107 7 4 170 86 257 3.09e-11 63.9
MS.gene073336.t1 AT1G69550 40.000 170 93 8 9 172 919 1085 2.79e-12 67.0
MS.gene073336.t1 AT1G69550 40.828 169 92 8 9 172 967 1132 6.90e-12 65.9
MS.gene073336.t1 AT5G62230 28.509 228 130 9 4 201 100 324 1.39e-11 65.1
MS.gene073336.t1 AT3G23110 32.018 228 127 6 7 207 121 347 1.41e-11 65.1
MS.gene073336.t1 AT5G62230 28.509 228 130 9 4 201 100 324 1.80e-11 64.7
MS.gene073336.t1 AT5G07180 29.741 232 130 10 4 205 102 330 2.13e-11 64.3
MS.gene073336.t1 AT5G07180 29.741 232 130 10 4 205 6 234 2.32e-11 64.3
MS.gene073336.t1 AT5G46330 34.409 186 114 8 4 183 221 404 2.68e-11 64.3
MS.gene073336.t1 AT5G46330 34.409 186 114 8 4 183 221 404 2.68e-11 64.3
MS.gene073336.t1 AT4G20140 32.227 211 110 9 4 183 604 812 4.02e-11 63.5
MS.gene073336.t1 AT5G49660 32.161 199 120 8 21 205 144 341 5.15e-11 63.2
MS.gene073336.t1 AT5G27060 32.258 186 98 7 1 182 147 308 8.22e-11 62.8
MS.gene073336.t1 AT5G27060 32.258 186 98 7 1 182 147 308 8.22e-11 62.8
MS.gene073336.t1 AT5G27060 32.258 186 98 7 1 182 148 309 8.38e-11 62.8

Find 78 sgRNAs with CRISPR-Local

Find 303 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTGCAATTCTCAATTGTTT+TGG 0.200816 8.1:-5904669 None:intergenic
CCAAAACAATTGAGAATTGC+AGG 0.273031 8.1:+5904669 MS.gene073336:CDS
ATTTAGATTCAAATCTTCTA+AGG 0.280529 8.1:-5909107 None:intergenic
CCCAAGACTTCTTCTTTGTT+GGG 0.301099 8.1:-5909582 None:intergenic
GAGAGGCAGCCGATGGAGTT+TGG 0.307585 8.1:-5904599 None:intergenic
ACCCAAGACTTCTTCTTTGT+TGG 0.310134 8.1:-5909583 None:intergenic
GAAAGTTCTGACTCACGTTT+AGG 0.338517 8.1:-5909327 None:intergenic
GTTGGAAGGTTGGTAAAGTA+TGG 0.343080 8.1:+5909604 MS.gene073336:CDS
AGTTGACTGATAATTTCTTT+AGG 0.345508 8.1:-5909180 None:intergenic
AGAGGCAGCCGATGGAGTTT+GGG 0.348198 8.1:-5904598 None:intergenic
AAGAGAAGTCCTACAGAGTA+TGG 0.365595 8.1:-5909367 None:intergenic
ACTTGCATCTCCCCGTCATA+TGG 0.374863 8.1:+5909705 MS.gene073336:CDS
ATGAGATTCTCAAGATCCTC+TGG 0.386944 8.1:-5909292 None:intergenic
AAGGGTATGGATGAGGTTGC+CGG 0.404699 8.1:-5904645 None:intergenic
GACTCACGTTTAGGATTTCA+AGG 0.409642 8.1:-5909318 None:intergenic
GCCAACTACCAGACACAATA+GGG 0.412601 8.1:+5909143 MS.gene073336:CDS
ATGCACGACTTAACTGTCTT+AGG 0.417931 8.1:+5909263 MS.gene073336:CDS
GAAGTCTTGGGTTGGAAGGT+TGG 0.419157 8.1:+5909594 MS.gene073336:CDS
TTAAGACAACCAATGGAATC+AGG 0.421056 8.1:-5909436 None:intergenic
AGCCAACTACCAGACACAAT+AGG 0.438497 8.1:+5909142 MS.gene073336:CDS
ACTCCATCGGCTGCCTCTCT+AGG 0.438633 8.1:+5904603 MS.gene073336:CDS
AATCCCCTCTCTACCACTTC+TGG 0.439137 8.1:-5909508 None:intergenic
CTCTCTACCACTTCTGGTGG+TGG 0.458033 8.1:-5909502 None:intergenic
AGCTCAAACCCTATTGTGTC+TGG 0.459505 8.1:-5909151 None:intergenic
CTTGCATCTCCCCGTCATAT+GGG 0.461370 8.1:+5909706 MS.gene073336:CDS
ACCCTATTGTGTCTGGTAGT+TGG 0.461801 8.1:-5909144 None:intergenic
TCTGGTGGTGGTGAAGTAAG+AGG 0.466449 8.1:-5909490 None:intergenic
GCCCAACAAAGAAGAAGTCT+TGG 0.471335 8.1:+5909581 MS.gene073336:CDS
AAGCTTGTTAAGACAACCAA+TGG 0.485092 8.1:-5909443 None:intergenic
AAGTCCTTGCCTGATTCCAT+TGG 0.489489 8.1:+5909427 MS.gene073336:CDS
AATTCTATTCCATACTCTGT+AGG 0.489506 8.1:+5909358 MS.gene073336:CDS
AGTTTGGGAGGGACCTAAGC+TGG 0.496896 8.1:-5904583 None:intergenic
CTTCAAAAGTTGAGTGTGGA+AGG 0.497449 8.1:+5909463 MS.gene073336:CDS
ATCTCACCTCACATCTCTAA+AGG 0.513034 8.1:+5909234 MS.gene073336:CDS
GGTGAGATGTGGAGCGTGGA+AGG 0.519158 8.1:-5909219 None:intergenic
GAGGGGATTGCATATAGTGA+AGG 0.521416 8.1:+5909522 MS.gene073336:CDS
ACGTGCACTCAAACCAGCTT+AGG 0.521957 8.1:+5904570 MS.gene073336:CDS
TGAAAACATCCCCATATGAC+GGG 0.524860 8.1:-5909716 None:intergenic
CCCAACAAAGAAGAAGTCTT+GGG 0.532290 8.1:+5909582 MS.gene073336:CDS
AGAAGAAGTCTTGGGTTGGA+AGG 0.539561 8.1:+5909590 MS.gene073336:CDS
GAGTATAATAGATCGATTGA+CGG 0.550835 8.1:+5909682 MS.gene073336:CDS
TCAATCGATCTATTATACTC+AGG 0.552308 8.1:-5909679 None:intergenic
CCCCTCTCTACCACTTCTGG+TGG 0.553716 8.1:-5909505 None:intergenic
TACTTCACCACCACCAGAAG+TGG 0.555354 8.1:+5909495 MS.gene073336:CDS
ACAAAGAAGAAGTCTTGGGT+TGG 0.563875 8.1:+5909586 MS.gene073336:CDS
GGAACATTCAATGTTAGAAG+TGG 0.566799 8.1:+5909625 MS.gene073336:CDS
TTGCATCTCCCCGTCATATG+GGG 0.571122 8.1:+5909707 MS.gene073336:CDS
GGCAGCCGATGGAGTTTGGG+AGG 0.572183 8.1:-5904595 None:intergenic
TGAGATTCTCAAGATCCTCT+GGG 0.572662 8.1:-5909291 None:intergenic
ACTGCTGAACATGGTGGTGT+TGG 0.579811 8.1:+5904547 None:intergenic
GAGCCTAGAGAGGCAGCCGA+TGG 0.581325 8.1:-5904606 None:intergenic
GTGAGGTGAGATGTGGAGCG+TGG 0.581524 8.1:-5909223 None:intergenic
CAATCGATCTATTATACTCA+GGG 0.582276 8.1:-5909678 None:intergenic
CAAGCTTCAAAAGTTGAGTG+TGG 0.584306 8.1:+5909459 MS.gene073336:CDS
CTGGTGGTGGTGAAGTAAGA+GGG 0.587315 8.1:-5909489 None:intergenic
ACCACCAGAAGTGGTAGAGA+GGG 0.591895 8.1:+5909504 MS.gene073336:CDS
GTGAAAACATCCCCATATGA+CGG 0.592554 8.1:-5909717 None:intergenic
AGGTCCCTCCCAAACTCCAT+CGG 0.602549 8.1:+5904590 MS.gene073336:CDS
CACCACCAGAAGTGGTAGAG+AGG 0.603029 8.1:+5909503 MS.gene073336:CDS
CGTAGTTACTTCAGCAACTG+AGG 0.603271 8.1:+5909760 MS.gene073336:CDS
TTGTGCAACAAGATGAATGC+TGG 0.613480 8.1:+5909550 MS.gene073336:CDS
TTCAAAAGTTGAGTGTGGAA+GGG 0.614481 8.1:+5909464 MS.gene073336:CDS
GCAGCCGATGGAGTTTGGGA+GGG 0.624510 8.1:-5904594 None:intergenic
TCAAAAGCTTGAGCCTAGAG+AGG 0.635179 8.1:-5904616 None:intergenic
TGGAGCTCGTGAAGAACATG+AGG 0.639837 8.1:+5909645 MS.gene073336:CDS
CTAAAACCTTTAGAGATGTG+AGG 0.644830 8.1:-5909240 None:intergenic
CGAGGGGAGAAGAGCCGACG+AGG 0.646003 8.1:-5909739 None:intergenic
TAGAGATGTGAGGTGAGATG+TGG 0.648878 8.1:-5909230 None:intergenic
GCTAACATCAAGTTCAGTGA+GGG 0.655080 8.1:-5909392 None:intergenic
ACAACCAATGGAATCAGGCA+AGG 0.661152 8.1:-5909431 None:intergenic
AGTTGCTGAAGTAACTACGA+GGG 0.664531 8.1:-5909756 None:intergenic
CTGTCTTAGGTCTCTCCCAG+AGG 0.676632 8.1:+5909276 MS.gene073336:CDS
GTTGCTGAAGTAACTACGAG+GGG 0.693808 8.1:-5909755 None:intergenic
CAGTTGCTGAAGTAACTACG+AGG 0.693890 8.1:-5909757 None:intergenic
TCGATCTATTATACTCAGGG+AGG 0.695905 8.1:-5909675 None:intergenic
AGCTAACATCAAGTTCAGTG+AGG 0.697554 8.1:-5909393 None:intergenic
CCACCAGAAGTGGTAGAGAG+GGG 0.704955 8.1:+5909505 MS.gene073336:CDS
GAAAACATCCCCATATGACG+GGG 0.718629 8.1:-5909715 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTATTATTATTATTATTAT+TGG - chr8.1:5908915-5908934 None:intergenic 0.0%
!! AAATTACAAATTTAAAAATG+AGG - chr8.1:5908469-5908488 None:intergenic 10.0%
!! TCAATTTGATAAAAAAAAAA+GGG - chr8.1:5907483-5907502 None:intergenic 10.0%
!! TTTAGAAAATTTAGAAAAAT+AGG + chr8.1:5908759-5908778 MS.gene073336:intron 10.0%
!!! AATTAAATTCTTATTTTGTA+TGG + chr8.1:5905451-5905470 MS.gene073336:intron 10.0%
!!! ATTTTTAAGAGAAAAAATAT+AGG - chr8.1:5906212-5906231 None:intergenic 10.0%
!!! TTTTTAAGAGAAAAAATATA+GGG - chr8.1:5906211-5906230 None:intergenic 10.0%
!! AAAAGATAAAGAAAAAACAA+AGG - chr8.1:5906384-5906403 None:intergenic 15.0%
!! AAATAGATTTATTTGTATGA+CGG + chr8.1:5905117-5905136 MS.gene073336:intron 15.0%
!! AACATTTAACATAAATTATG+AGG + chr8.1:5908545-5908564 MS.gene073336:intron 15.0%
!! ATATATACTTGATGTATAAA+TGG - chr8.1:5904882-5904901 None:intergenic 15.0%
!! ATATTTAAAAGTTGGATTAT+AGG - chr8.1:5906329-5906348 None:intergenic 15.0%
!! ATATTTAGAAGTTGAATTAT+AGG - chr8.1:5906047-5906066 None:intergenic 15.0%
!! ATGTGTAAAAAAAATTAAGA+AGG - chr8.1:5906149-5906168 None:intergenic 15.0%
!! ATTATTATTATTGGTAGAAA+GGG - chr8.1:5908906-5908925 None:intergenic 15.0%
!! ATTGACAAAAAAATTATTCA+AGG - chr8.1:5909012-5909031 None:intergenic 15.0%
!! GTCAATTTGATAAAAAAAAA+AGG - chr8.1:5907484-5907503 None:intergenic 15.0%
!! TATTAACAAAGTTATTGAAA+TGG + chr8.1:5907973-5907992 MS.gene073336:intron 15.0%
!! TATTATTATTATTGGTAGAA+AGG - chr8.1:5908907-5908926 None:intergenic 15.0%
!! TCATAATTTATGTTAAATGT+TGG - chr8.1:5908546-5908565 None:intergenic 15.0%
!! TGTGTAAAAAAAATTAAGAA+GGG - chr8.1:5906148-5906167 None:intergenic 15.0%
!! TTGACCAAAAATAAATAAAA+TGG - chr8.1:5904849-5904868 None:intergenic 15.0%
!! TTTCAAAATTAAGTTAAATG+AGG - chr8.1:5907850-5907869 None:intergenic 15.0%
!!! AATGTGGTTTAATTTTTAAA+TGG + chr8.1:5907645-5907664 MS.gene073336:intron 15.0%
!!! AGAAGTAATAATAATTTTGA+AGG + chr8.1:5905610-5905629 MS.gene073336:intron 15.0%
!!! AGGAAAATTTATTTTTGATT+GGG - chr8.1:5906309-5906328 None:intergenic 15.0%
!!! CTATTTCAATAATTTTTTCA+TGG + chr8.1:5907379-5907398 MS.gene073336:intron 15.0%
!!! GTTTGTTTTAATTTGTTTTT+AGG - chr8.1:5905944-5905963 None:intergenic 15.0%
!!! TAAAATTATGCAATTTTGAT+CGG + chr8.1:5908504-5908523 MS.gene073336:intron 15.0%
!!! TAGGAAAATTTATTTTTGAT+TGG - chr8.1:5906310-5906329 None:intergenic 15.0%
!!! TATGCTATTTAATTTGTTTA+TGG - chr8.1:5907018-5907037 None:intergenic 15.0%
!!! TATTTTATAATATGACATAG+TGG - chr8.1:5907145-5907164 None:intergenic 15.0%
!!! TGCATAATTTTAAATTTTAG+AGG - chr8.1:5908496-5908515 None:intergenic 15.0%
!!! TTAGTTTTCAAATAATTACA+TGG + chr8.1:5905295-5905314 MS.gene073336:intron 15.0%
!!! TTGTTTTTTCTTTATCTTTT+TGG + chr8.1:5906384-5906403 MS.gene073336:intron 15.0%
!! AAAAATAGAGCACATTATAA+TGG - chr8.1:5904967-5904986 None:intergenic 20.0%
!! AATAGATTTATTTGTATGAC+GGG + chr8.1:5905118-5905137 MS.gene073336:intron 20.0%
!! AATTTATGTTAAATGTTGGA+TGG - chr8.1:5908542-5908561 None:intergenic 20.0%
!! ACTTCTCTTATAATATAACA+CGG + chr8.1:5907508-5907527 MS.gene073336:intron 20.0%
!! ATGTGTTTGGAAAATTATAA+GGG + chr8.1:5908015-5908034 MS.gene073336:intron 20.0%
!! ATTCAACTTCTAAATATCAA+AGG + chr8.1:5906050-5906069 MS.gene073336:intron 20.0%
!! ATTTAACATAAATTATGAGG+TGG + chr8.1:5908548-5908567 MS.gene073336:intron 20.0%
!! ATTTAGATTCAAATCTTCTA+AGG - chr8.1:5909110-5909129 None:intergenic 20.0%
!! CTCTTTAGATATTTAAAAGT+TGG - chr8.1:5906337-5906356 None:intergenic 20.0%
!! GTGTAAAAAAAATTAAGAAG+GGG - chr8.1:5906147-5906166 None:intergenic 20.0%
!! TAAATTAAAACAAACTCACT+CGG + chr8.1:5906231-5906250 MS.gene073336:intron 20.0%
!! TAAGCATCTATGTTAAATAT+CGG + chr8.1:5908683-5908702 MS.gene073336:intron 20.0%
!! TATAAAAATTCGTATATCTC+CGG - chr8.1:5905399-5905418 None:intergenic 20.0%
!! TATACATCAAGTATATATGT+TGG + chr8.1:5904884-5904903 MS.gene073336:intron 20.0%
!! TATTGAAATGGATAAAATGA+GGG + chr8.1:5907985-5908004 MS.gene073336:intron 20.0%
!! TGAAATGAAATTGAATGATA+GGG + chr8.1:5905583-5905602 MS.gene073336:intron 20.0%
!! TGTTATCAAATATTATGAAG+TGG - chr8.1:5907358-5907377 None:intergenic 20.0%
!! TGTTTAGTTAAAAAATAGAG+CGG - chr8.1:5907453-5907472 None:intergenic 20.0%
!! TTATTATTATTGGTAGAAAG+GGG - chr8.1:5908905-5908924 None:intergenic 20.0%
!! TTATTGAAATGGATAAAATG+AGG + chr8.1:5907984-5908003 MS.gene073336:intron 20.0%
!! TTGAAATGAAATTGAATGAT+AGG + chr8.1:5905582-5905601 MS.gene073336:intron 20.0%
!! TTTCATGACAAAAAAAAGAT+AGG - chr8.1:5906732-5906751 None:intergenic 20.0%
!!! AAATTGTAGTTTTCAAAGTT+AGG - chr8.1:5906461-5906480 None:intergenic 20.0%
!!! AACTTTGAAAACTACAATTT+TGG + chr8.1:5906461-5906480 MS.gene073336:intron 20.0%
!!! AAGTATGAAAACTACAATTT+TGG - chr8.1:5906655-5906674 None:intergenic 20.0%
!!! AATTGTAGTTTTCAAAGTTA+GGG - chr8.1:5906460-5906479 None:intergenic 20.0%
!!! AATTGTAGTTTTCATACTTA+AGG + chr8.1:5906656-5906675 MS.gene073336:intron 20.0%
!!! ATTGTAGTTTTCATACTTAA+GGG + chr8.1:5906657-5906676 MS.gene073336:intron 20.0%
!!! ATTTGGTTATTAAAGTACTT+TGG + chr8.1:5905270-5905289 MS.gene073336:intron 20.0%
!!! CAATTTAATTTCAGCTATTT+TGG - chr8.1:5907951-5907970 None:intergenic 20.0%
!!! GAAGCCATTTTATTTATTTT+TGG + chr8.1:5904842-5904861 MS.gene073336:intron 20.0%
!!! GATTTTAAAGATATAGTTCT+TGG + chr8.1:5905180-5905199 MS.gene073336:intron 20.0%
!!! GTTCTTTAAGAAAATCTAAA+GGG + chr8.1:5908046-5908065 MS.gene073336:intron 20.0%
!!! TAAAGATTTTTTTTTCCCTT+TGG + chr8.1:5905151-5905170 MS.gene073336:intron 20.0%
!!! TAAATTCTTATTTTGTATGG+TGG + chr8.1:5905454-5905473 MS.gene073336:intron 20.0%
!!! TACAAAAATGAGAAGAATTT+TGG - chr8.1:5907721-5907740 None:intergenic 20.0%
!!! TCTCTAAGAAAAACAATTAA+TGG + chr8.1:5906950-5906969 MS.gene073336:intron 20.0%
!!! TGTTCTTTAAGAAAATCTAA+AGG + chr8.1:5908045-5908064 MS.gene073336:intron 20.0%
!!! TTTTTAGGAGAGAAAAAATA+GGG - chr8.1:5905929-5905948 None:intergenic 20.0%
!!! TTTTTGATTACAAAAGTCAA+AGG - chr8.1:5905673-5905692 None:intergenic 20.0%
! AAAAAATGTAGAGAAAAGAC+AGG - chr8.1:5908833-5908852 None:intergenic 25.0%
! AAAAATCACCAAGTGAAAAA+TGG - chr8.1:5907603-5907622 None:intergenic 25.0%
! AAATATGTTTACAAACAGAC+CGG - chr8.1:5905254-5905273 None:intergenic 25.0%
! AACAGAGAATCAAAGAAATT+AGG + chr8.1:5907119-5907138 MS.gene073336:intron 25.0%
! ACATAATAAATCAGATCAAG+TGG + chr8.1:5906833-5906852 MS.gene073336:intron 25.0%
! ACGTGTCAAAAAATTAAGAA+GGG - chr8.1:5905865-5905884 None:intergenic 25.0%
! ACTTGATCTGATTTATTATG+TGG - chr8.1:5906834-5906853 None:intergenic 25.0%
! AGAGATCAAAATTGTCTAAT+TGG + chr8.1:5908710-5908729 MS.gene073336:intron 25.0%
! AGTTGACTGATAATTTCTTT+AGG - chr8.1:5909183-5909202 None:intergenic 25.0%
! ATAGATTTATTTGTATGACG+GGG + chr8.1:5905119-5905138 MS.gene073336:intron 25.0%
! ATTGAAATGGATAAAATGAG+GGG + chr8.1:5907986-5908005 MS.gene073336:intron 25.0%
! CATGTATTTCTTATAAACAC+CGG + chr8.1:5905377-5905396 MS.gene073336:intron 25.0%
! CTATATGAATTGAGAAAATC+AGG - chr8.1:5908132-5908151 None:intergenic 25.0%
! GAAATGAAATTGAATGATAG+GGG + chr8.1:5905584-5905603 MS.gene073336:intron 25.0%
! GATATTTAACATAGATGCTT+AGG - chr8.1:5908684-5908703 None:intergenic 25.0%
! GATCAATAAGAGGAAAAAAA+TGG - chr8.1:5905331-5905350 None:intergenic 25.0%
! GATGTGTTTGGAAAATTATA+AGG + chr8.1:5908014-5908033 MS.gene073336:intron 25.0%
! GTTATTTAAGAAGACCTTAA+GGG - chr8.1:5907422-5907441 None:intergenic 25.0%
! GTTTAGTTAAAAAATAGAGC+GGG - chr8.1:5907452-5907471 None:intergenic 25.0%
! TCAAAAAAGTGATTTGAACT+CGG + chr8.1:5905686-5905705 MS.gene073336:intron 25.0%
! TCATACTCGTAATTAACAAA+TGG - chr8.1:5907551-5907570 None:intergenic 25.0%
! TGTGTTTGGAAAATTATAAG+GGG + chr8.1:5908016-5908035 MS.gene073336:intron 25.0%
!! AAAAATGAGAAGAATTTTGG+TGG - chr8.1:5907718-5907737 None:intergenic 25.0%
!! ATTGTAGTTTTCAAAGTTAG+GGG - chr8.1:5906459-5906478 None:intergenic 25.0%
!! CAAGTATATATGTTGGATTT+TGG + chr8.1:5904891-5904910 MS.gene073336:intron 25.0%
!! GAATTTTGTTACGATAGATT+TGG - chr8.1:5906865-5906884 None:intergenic 25.0%
!! TGTTATTTAAGAAGACCTTA+AGG - chr8.1:5907423-5907442 None:intergenic 25.0%
!! TTGTAGTTTTCATACTTAAG+GGG + chr8.1:5906658-5906677 MS.gene073336:intron 25.0%
!! TTTAAAATCTTGTCACCAAA+GGG - chr8.1:5905169-5905188 None:intergenic 25.0%
!! TTTTCAAAATGTTGCGATTA+TGG - chr8.1:5906560-5906579 None:intergenic 25.0%
!!! AAAATGAGAAGAATTTTGGT+GGG - chr8.1:5907717-5907736 None:intergenic 25.0%
!!! CAACATTTTGAAAAGATAAG+GGG + chr8.1:5906566-5906585 MS.gene073336:intron 25.0%
!!! GCAACATTTTGAAAAGATAA+GGG + chr8.1:5906565-5906584 MS.gene073336:intron 25.0%
!!! GTTTTTAGGAGAGAAAAAAT+AGG - chr8.1:5905930-5905949 None:intergenic 25.0%
!!! TTTCATATTTTTTTGTGACC+CGG - chr8.1:5906924-5906943 None:intergenic 25.0%
!!! TTTTAGAGTCATCTTTCTAA+AGG - chr8.1:5907204-5907223 None:intergenic 25.0%
!!! TTTTAGGAGAGAAAAAATAG+GGG - chr8.1:5905928-5905947 None:intergenic 25.0%
!!! TTTTCTTTCCATTTTTCACT+TGG + chr8.1:5907592-5907611 MS.gene073336:intron 25.0%
AATAAGTTTACACACAGAGT+AGG - chr8.1:5908319-5908338 None:intergenic 30.0%
AATTCTATTCCATACTCTGT+AGG + chr8.1:5909358-5909377 MS.gene073336:CDS 30.0%
ACATATTTCCCTTAAGTTAG+GGG + chr8.1:5906596-5906615 MS.gene073336:intron 30.0%
AGACATATTTCCCTTAAGTT+AGG + chr8.1:5906594-5906613 MS.gene073336:intron 30.0%
AGAGCAAAGAAAAATCTTAC+CGG + chr8.1:5905232-5905251 MS.gene073336:intron 30.0%
AGTTCTTGGTCAAAATTAAG+TGG + chr8.1:5905194-5905213 MS.gene073336:intron 30.0%
ATAAGTTTACACACAGAGTA+GGG - chr8.1:5908318-5908337 None:intergenic 30.0%
ATTTAACATAGATGCTTAGG+TGG - chr8.1:5908681-5908700 None:intergenic 30.0%
CAATCGATCTATTATACTCA+GGG - chr8.1:5909681-5909700 None:intergenic 30.0%
CACCAAATAGAATCAAACAT+CGG - chr8.1:5907770-5907789 None:intergenic 30.0%
CGTGTCAAAAAATTAAGAAG+GGG - chr8.1:5905864-5905883 None:intergenic 30.0%
GAAATAGATAAAGAGACTGA+AGG + chr8.1:5906770-5906789 MS.gene073336:intron 30.0%
GACATATTTCCCTTAAGTTA+GGG + chr8.1:5906595-5906614 MS.gene073336:intron 30.0%
GACGTGTCAAAAAATTAAGA+AGG - chr8.1:5905866-5905885 None:intergenic 30.0%
GAGTATAATAGATCGATTGA+CGG + chr8.1:5909682-5909701 MS.gene073336:CDS 30.0%
GGTCTGTTTGTAAACATATT+TGG + chr8.1:5905253-5905272 MS.gene073336:intron 30.0%
GTGAAAAATGGAAAGAAAAG+TGG - chr8.1:5907591-5907610 None:intergenic 30.0%
GTGGATGTTAAGTATTAATG+TGG + chr8.1:5908567-5908586 MS.gene073336:intron 30.0%
TACTCTGTGTGTAAACTTAT+TGG + chr8.1:5908318-5908337 MS.gene073336:intron 30.0%
TAGATTTATTTGTATGACGG+GGG + chr8.1:5905120-5905139 MS.gene073336:intron 30.0%
TCAACTAAACTCTCGAATTA+TGG - chr8.1:5905720-5905739 None:intergenic 30.0%
TCAATCGATCTATTATACTC+AGG - chr8.1:5909682-5909701 None:intergenic 30.0%
TCATATGACACAAGACAAAA+TGG - chr8.1:5905638-5905657 None:intergenic 30.0%
TTTAGGAGAGAAAAAATAGG+GGG - chr8.1:5905927-5905946 None:intergenic 30.0%
! AAATTAAACCACATTGACTG+AGG - chr8.1:5907640-5907659 None:intergenic 30.0%
! AAGGGGTAAGATTGTATTTT+TGG - chr8.1:5905847-5905866 None:intergenic 30.0%
! CTGCAATTCTCAATTGTTTT+GGG - chr8.1:5904671-5904690 None:intergenic 30.0%
! CTTTCAAAAAGTTGCGATTT+TGG + chr8.1:5906432-5906451 MS.gene073336:intron 30.0%
! CTTTCAAAAAGTTGCGATTT+TGG - chr8.1:5906451-5906432 None:intergenic 30.0%
! TTGTAGTTTTCAAAGTTAGG+GGG - chr8.1:5906458-5906477 None:intergenic 30.0%
!! CAAACAAAACACTTTGAAAC+CGG + chr8.1:5907073-5907092 MS.gene073336:intron 30.0%
!! CGCAACATTTTGAAAAGATA+AGG + chr8.1:5906564-5906583 MS.gene073336:intron 30.0%
!! CGCAACTTTTTGAAAGATAA+GGG + chr8.1:5906688-5906707 MS.gene073336:intron 30.0%
!! CGCAACTTTTTGAAAGATAA+GGG - chr8.1:5906707-5906688 None:intergenic 30.0%
!! CTTTAAAATCTTGTCACCAA+AGG - chr8.1:5905170-5905189 None:intergenic 30.0%
!! GCAACTTTTTGAAAGATAAG+GGG + chr8.1:5906689-5906708 MS.gene073336:intron 30.0%
!! GCAACTTTTTGAAAGATAAG+GGG - chr8.1:5906708-5906689 None:intergenic 30.0%
!! TCGCAACTTTTTGAAAGATA+AGG + chr8.1:5906687-5906706 MS.gene073336:intron 30.0%
!! TCGCAACTTTTTGAAAGATA+AGG - chr8.1:5906706-5906687 None:intergenic 30.0%
!! TGTTGAGAAAGTACACTTTT+TGG + chr8.1:5908349-5908368 MS.gene073336:intron 30.0%
!! TTAGACAATTTTGATCTCTC+CGG - chr8.1:5908709-5908728 None:intergenic 30.0%
!!! AATTCTCAATTGTTTTGGGA+AGG - chr8.1:5904667-5904686 None:intergenic 30.0%
!!! ATTCTCAATTGTTTTGGGAA+GGG - chr8.1:5904666-5904685 None:intergenic 30.0%
AAATGTAGAGAAAAGACAGG+TGG - chr8.1:5908830-5908849 None:intergenic 35.0%
AACTACACTAACATCCCTTA+AGG + chr8.1:5907405-5907424 MS.gene073336:intron 35.0%
AATGTAGAGAAAAGACAGGT+GGG - chr8.1:5908829-5908848 None:intergenic 35.0%
ACTTAGGTACAACGAAAAAC+GGG + chr8.1:5906804-5906823 MS.gene073336:intron 35.0%
AGAGCATATTTCCCTAAACA+TGG + chr8.1:5906625-5906644 MS.gene073336:intron 35.0%
AGCATATTTCCCTAAACATG+GGG + chr8.1:5906627-5906646 MS.gene073336:intron 35.0%
ATGAAATTGAATGATAGGGG+TGG + chr8.1:5905587-5905606 MS.gene073336:intron 35.0%
CATATTTCCCTTAAGTTAGG+GGG + chr8.1:5906597-5906616 MS.gene073336:intron 35.0%
CATCTATGTTAAATATCGGC+CGG + chr8.1:5908687-5908706 MS.gene073336:intron 35.0%
CCAAAACAATTGAGAATTGC+AGG + chr8.1:5904669-5904688 MS.gene073336:CDS 35.0%
CCAAATATGTTGAGATCTAC+CGG - chr8.1:5907095-5907114 None:intergenic 35.0%
CGATGTTTGATTCTATTTGG+TGG + chr8.1:5907768-5907787 MS.gene073336:intron 35.0%
GACTTAGGTACAACGAAAAA+CGG + chr8.1:5906803-5906822 MS.gene073336:intron 35.0%
GAGCATATTTCCCTAAACAT+GGG + chr8.1:5906626-5906645 MS.gene073336:intron 35.0%
GCAATTACAGAAGAGATCAA+AGG - chr8.1:5907748-5907767 None:intergenic 35.0%
GGAACATTCAATGTTAGAAG+TGG + chr8.1:5909625-5909644 MS.gene073336:CDS 35.0%
GTTGATGCAAAAGACACAAA+AGG - chr8.1:5905902-5905921 None:intergenic 35.0%
TGCCGATGTTTGATTCTATT+TGG + chr8.1:5907765-5907784 MS.gene073336:intron 35.0%
TTAAGACAACCAATGGAATC+AGG - chr8.1:5909439-5909458 None:intergenic 35.0%
TTATTGTTCCTCAGTCAATG+TGG + chr8.1:5907629-5907648 MS.gene073336:intron 35.0%
TTCAAAAGTTGAGTGTGGAA+GGG + chr8.1:5909464-5909483 MS.gene073336:CDS 35.0%
TTCGAATCTGATCATGATGT+GGG - chr8.1:5905074-5905093 None:intergenic 35.0%
TTTATGGAGTTGTTGACACT+TGG - chr8.1:5907002-5907021 None:intergenic 35.0%
TTTCGAATCTGATCATGATG+TGG - chr8.1:5905075-5905094 None:intergenic 35.0%
! AACTTTGAAAACTGCTGAGA+AGG + chr8.1:5906490-5906509 MS.gene073336:intron 35.0%
! CCTGCAATTCTCAATTGTTT+TGG - chr8.1:5904672-5904691 None:intergenic 35.0%
! CTAAAACCTTTAGAGATGTG+AGG - chr8.1:5909243-5909262 None:intergenic 35.0%
! CTCAGCAGTTTTCAAAGTTA+GGG - chr8.1:5906489-5906508 None:intergenic 35.0%
! CTTTTAACCCCCTAACTTAA+GGG - chr8.1:5906607-5906626 None:intergenic 35.0%
! TCAGCAGTTTTCAAAGTTAG+GGG - chr8.1:5906488-5906507 None:intergenic 35.0%
! TCTCAGCAGTTTTCAAAGTT+AGG - chr8.1:5906490-5906509 None:intergenic 35.0%
! TCTTTTAACCCCCTAACTTA+AGG - chr8.1:5906608-5906627 None:intergenic 35.0%
! TTTTTCGTTGTACCTAAGTC+AGG - chr8.1:5906803-5906822 None:intergenic 35.0%
!! AAGCTTGTTAAGACAACCAA+TGG - chr8.1:5909446-5909465 None:intergenic 35.0%
!! GGATTTTGATATTGTGCTGA+CGG - chr8.1:5906981-5907000 None:intergenic 35.0%
!! GGCCATTTTGAAAAGATAAG+GGG + chr8.1:5906534-5906553 MS.gene073336:intron 35.0%
!! GGGCCATTTTGAAAAGATAA+GGG + chr8.1:5906533-5906552 MS.gene073336:intron 35.0%
!!! TGTTTTGTTTGTCTACACTC+TGG - chr8.1:5907064-5907083 None:intergenic 35.0%
!!! TTCAAAATGGCCCCTTTTTT+TGG - chr8.1:5906526-5906545 None:intergenic 35.0%
AAAGAAACGTGAGAGTGATG+TGG - chr8.1:5908638-5908657 None:intergenic 40.0%
AAGAGAAGTCCTACAGAGTA+TGG - chr8.1:5909370-5909389 None:intergenic 40.0%
ACAAAGAAGAAGTCTTGGGT+TGG + chr8.1:5909586-5909605 MS.gene073336:CDS 40.0%
ACCCAAGACTTCTTCTTTGT+TGG - chr8.1:5909586-5909605 None:intergenic 40.0%
AGCTAACATCAAGTTCAGTG+AGG - chr8.1:5909396-5909415 None:intergenic 40.0%
AGTTGCTGAAGTAACTACGA+GGG - chr8.1:5909759-5909778 None:intergenic 40.0%
ATCTCACCTCACATCTCTAA+AGG + chr8.1:5909234-5909253 MS.gene073336:CDS 40.0%
ATGAGATTCTCAAGATCCTC+TGG - chr8.1:5909295-5909314 None:intergenic 40.0%
ATGCACGACTTAACTGTCTT+AGG + chr8.1:5909263-5909282 MS.gene073336:CDS 40.0%
CAAGCTTCAAAAGTTGAGTG+TGG + chr8.1:5909459-5909478 MS.gene073336:CDS 40.0%
CCCAACAAAGAAGAAGTCTT+GGG + chr8.1:5909582-5909601 MS.gene073336:CDS 40.0%
CCCAAGACTTCTTCTTTGTT+GGG - chr8.1:5909585-5909604 None:intergenic 40.0%
CCGGTAGATCTCAACATATT+TGG + chr8.1:5907092-5907111 MS.gene073336:intron 40.0%
CTCTGTGGAGTCAAATTTCA+TGG - chr8.1:5909087-5909106 None:intergenic 40.0%
CTGTGTTTGAATGAGTGTCT+AGG + chr8.1:5904775-5904794 MS.gene073336:intron 40.0%
CTTAGGTACAACGAAAAACG+GGG + chr8.1:5906805-5906824 MS.gene073336:intron 40.0%
CTTCAAAAGTTGAGTGTGGA+AGG + chr8.1:5909463-5909482 MS.gene073336:CDS 40.0%
GAAATGGATAAAATGAGGGG+AGG + chr8.1:5907989-5908008 MS.gene073336:intron 40.0%
GCATATTTCCCTAAACATGG+GGG + chr8.1:5906628-5906647 MS.gene073336:intron 40.0%
GCTAACATCAAGTTCAGTGA+GGG - chr8.1:5909395-5909414 None:intergenic 40.0%
GTGAAAACATCCCCATATGA+CGG - chr8.1:5909720-5909739 None:intergenic 40.0%
TCGATCTATTATACTCAGGG+AGG - chr8.1:5909678-5909697 None:intergenic 40.0%
TGAAAACATCCCCATATGAC+GGG - chr8.1:5909719-5909738 None:intergenic 40.0%
TGAGATTCTCAAGATCCTCT+GGG - chr8.1:5909294-5909313 None:intergenic 40.0%
TTGTGCAACAAGATGAATGC+TGG + chr8.1:5909550-5909569 MS.gene073336:CDS 40.0%
TTTACCATGCTTGCACTTAG+CGG + chr8.1:5908655-5908674 MS.gene073336:intron 40.0%
! CAGCAGTTTTCAAAGTTAGG+GGG - chr8.1:5906487-5906506 None:intergenic 40.0%
! CTCAAGCTTTTGAATGTCTC+CGG + chr8.1:5904626-5904645 MS.gene073336:CDS 40.0%
! GAAAGTTCTGACTCACGTTT+AGG - chr8.1:5909330-5909349 None:intergenic 40.0%
! GACTCACGTTTAGGATTTCA+AGG - chr8.1:5909321-5909340 None:intergenic 40.0%
! GGCCCCTTATCTTTTCAAAA+TGG - chr8.1:5906539-5906558 None:intergenic 40.0%
!! AATTTTGGTCCCCCATGTTT+AGG - chr8.1:5906640-5906659 None:intergenic 40.0%
!! ATGAGAAGAATTTTGGTGGG+TGG - chr8.1:5907714-5907733 None:intergenic 40.0%
!! ATTTTGGTCCCCCATGTTTA+GGG - chr8.1:5906639-5906658 None:intergenic 40.0%
!! GGGGCCATTTTGAAAAGATA+AGG + chr8.1:5906532-5906551 MS.gene073336:intron 40.0%
!! GTTGGAAGGTTGGTAAAGTA+TGG + chr8.1:5909604-5909623 MS.gene073336:CDS 40.0%
!! TCAAATCTTCTAAGGCTCTG+TGG - chr8.1:5909102-5909121 None:intergenic 40.0%
!!! CAATTGTTTTGGGAAGGGTA+TGG - chr8.1:5904661-5904680 None:intergenic 40.0%
AAGTCCTTGCCTGATTCCAT+TGG + chr8.1:5909427-5909446 MS.gene073336:CDS 45.0%
ACAACCAATGGAATCAGGCA+AGG - chr8.1:5909434-5909453 None:intergenic 45.0%
ACCCTATTGTGTCTGGTAGT+TGG - chr8.1:5909147-5909166 None:intergenic 45.0%
AGCCAACTACCAGACACAAT+AGG + chr8.1:5909142-5909161 MS.gene073336:CDS 45.0%
AGCTCAAACCCTATTGTGTC+TGG - chr8.1:5909154-5909173 None:intergenic 45.0%
CAGTTGCTGAAGTAACTACG+AGG - chr8.1:5909760-5909779 None:intergenic 45.0%
CGACACGTGTCCAAAAAAAG+GGG + chr8.1:5906513-5906532 MS.gene073336:intron 45.0%
GAAAACATCCCCATATGACG+GGG - chr8.1:5909718-5909737 None:intergenic 45.0%
GACACGTCGTGATCAATAAG+AGG - chr8.1:5905341-5905360 None:intergenic 45.0%
GAGGGGATTGCATATAGTGA+AGG + chr8.1:5909522-5909541 MS.gene073336:CDS 45.0%
GCCAACTACCAGACACAATA+GGG + chr8.1:5909143-5909162 MS.gene073336:CDS 45.0%
GCCCAACAAAGAAGAAGTCT+TGG + chr8.1:5909581-5909600 MS.gene073336:CDS 45.0%
GCGACACGTGTCCAAAAAAA+GGG + chr8.1:5906512-5906531 MS.gene073336:intron 45.0%
GTTGCTGAAGTAACTACGAG+GGG - chr8.1:5909758-5909777 None:intergenic 45.0%
TAGAGATGTGAGGTGAGATG+TGG - chr8.1:5909233-5909252 None:intergenic 45.0%
TCAAAAGCTTGAGCCTAGAG+AGG - chr8.1:5904619-5904638 None:intergenic 45.0%
TCAACAAACGAACCCGTACA+CGG + chr8.1:5906890-5906909 MS.gene073336:intron 45.0%
! TGGTGGCGTATCAAGAAAGA+TGG + chr8.1:5905471-5905490 MS.gene073336:intron 45.0%
!! AGAAGAAGTCTTGGGTTGGA+AGG + chr8.1:5909590-5909609 MS.gene073336:CDS 45.0%
!! ATTTTGGTGGGTGGACATTG+TGG - chr8.1:5907705-5907724 None:intergenic 45.0%
!! GAAGGCATTAGACCTGACTT+AGG + chr8.1:5906788-5906807 MS.gene073336:intron 45.0%
!! TTTTGGGAAGGGTATGGATG+AGG - chr8.1:5904655-5904674 None:intergenic 45.0%
!! AATTAATAAAAATATACATA+TGG - chr8.1:5905558-5905577 None:intergenic 5.0%
!!! TTTATATATTTTTTTTTCTT+TGG + chr8.1:5905015-5905034 MS.gene073336:intron 5.0%
AACAAACCCGTGCTAAGCAC+GGG - chr8.1:5908215-5908234 None:intergenic 50.0%
AATCCCCTCTCTACCACTTC+TGG - chr8.1:5909511-5909530 None:intergenic 50.0%
AATTAACCCGTGCGTAGCAC+GGG + chr8.1:5908189-5908208 MS.gene073336:intron 50.0%
ACCACCAGAAGTGGTAGAGA+GGG + chr8.1:5909504-5909523 MS.gene073336:CDS 50.0%
ACGTGCACTCAAACCAGCTT+AGG + chr8.1:5904570-5904589 MS.gene073336:CDS 50.0%
ACTTGCATCTCCCCGTCATA+TGG + chr8.1:5909705-5909724 MS.gene073336:CDS 50.0%
CAACAAACCCGTGCTAAGCA+CGG - chr8.1:5908216-5908235 None:intergenic 50.0%
CAACAAACGAACCCGTACAC+GGG + chr8.1:5906891-5906910 MS.gene073336:intron 50.0%
CTTGCATCTCCCCGTCATAT+GGG + chr8.1:5909706-5909725 MS.gene073336:CDS 50.0%
GAATTAACCCGTGCGTAGCA+CGG + chr8.1:5908188-5908207 MS.gene073336:intron 50.0%
GGCGACACGTGTCCAAAAAA+AGG + chr8.1:5906511-5906530 MS.gene073336:intron 50.0%
TACTTCACCACCACCAGAAG+TGG + chr8.1:5909495-5909514 MS.gene073336:CDS 50.0%
TGGAGCTCGTGAAGAACATG+AGG + chr8.1:5909645-5909664 MS.gene073336:CDS 50.0%
TTGCATCTCCCCGTCATATG+GGG + chr8.1:5909707-5909726 MS.gene073336:CDS 50.0%
! AAGGGTATGGATGAGGTTGC+CGG - chr8.1:5904648-5904667 None:intergenic 50.0%
! ACGCACGGGTTAATTCGAAG+TGG - chr8.1:5908184-5908203 None:intergenic 50.0%
! TGGGGATGTTTTCACCTCGT+CGG + chr8.1:5909725-5909744 MS.gene073336:CDS 50.0%
!! CTGGTGGTGGTGAAGTAAGA+GGG - chr8.1:5909492-5909511 None:intergenic 50.0%
!! GAAGTCTTGGGTTGGAAGGT+TGG + chr8.1:5909594-5909613 MS.gene073336:CDS 50.0%
!! TCTGGTGGTGGTGAAGTAAG+AGG - chr8.1:5909493-5909512 None:intergenic 50.0%
!! TGAGGGGAGGTTGATGTGTT+TGG + chr8.1:5908002-5908021 MS.gene073336:intron 50.0%
AGAGGCAGCCGATGGAGTTT+GGG - chr8.1:5904601-5904620 None:intergenic 55.0%
AGGTCCCTCCCAAACTCCAT+CGG + chr8.1:5904590-5904609 MS.gene073336:CDS 55.0%
AGTTTGGGAGGGACCTAAGC+TGG - chr8.1:5904586-5904605 None:intergenic 55.0%
CACCACCAGAAGTGGTAGAG+AGG + chr8.1:5909503-5909522 MS.gene073336:CDS 55.0%
CCACCAGAAGTGGTAGAGAG+GGG + chr8.1:5909505-5909524 MS.gene073336:CDS 55.0%
CTCTCTACCACTTCTGGTGG+TGG - chr8.1:5909505-5909524 None:intergenic 55.0%
CTGTCTTAGGTCTCTCCCAG+AGG + chr8.1:5909276-5909295 MS.gene073336:CDS 55.0%
CCCCTCTCTACCACTTCTGG+TGG - chr8.1:5909508-5909527 None:intergenic 60.0%
GAGAGGCAGCCGATGGAGTT+TGG - chr8.1:5904602-5904621 None:intergenic 60.0%
GCAGCCGATGGAGTTTGGGA+GGG - chr8.1:5904597-5904616 None:intergenic 60.0%
GGTGAGATGTGGAGCGTGGA+AGG - chr8.1:5909222-5909241 None:intergenic 60.0%
GTGAGGTGAGATGTGGAGCG+TGG - chr8.1:5909226-5909245 None:intergenic 60.0%
GTGGCCGCTAAGTGCAAGCA+TGG - chr8.1:5908662-5908681 None:intergenic 60.0%
! ACTCCATCGGCTGCCTCTCT+AGG + chr8.1:5904603-5904622 MS.gene073336:CDS 60.0%
CCCGGTTTCGTGCCCGTGTA+CGG - chr8.1:5906906-5906925 None:intergenic 65.0%
CCCGTACACGGGCACGAAAC+CGG + chr8.1:5906902-5906921 MS.gene073336:intron 65.0%
CCGGTTTCGTGCCCGTGTAC+GGG - chr8.1:5906905-5906924 None:intergenic 65.0%
CCGTACACGGGCACGAAACC+GGG + chr8.1:5906903-5906922 MS.gene073336:intron 65.0%
GAGCCTAGAGAGGCAGCCGA+TGG - chr8.1:5904609-5904628 None:intergenic 65.0%
GGCAGCCGATGGAGTTTGGG+AGG - chr8.1:5904598-5904617 None:intergenic 65.0%
CACGGGCCCGTGCTTAGCAC+GGG + chr8.1:5908206-5908225 MS.gene073336:intron 70.0%
CGAGGGGAGAAGAGCCGACG+AGG - chr8.1:5909742-5909761 None:intergenic 70.0%
GCACGGGCCCGTGCTTAGCA+CGG + chr8.1:5908205-5908224 MS.gene073336:intron 70.0%
CACGGGCCCGTGCTACGCAC+GGG - chr8.1:5908198-5908217 None:intergenic 75.0%
GCACGGGCCCGTGCTACGCA+CGG - chr8.1:5908199-5908218 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr8.1 gene 5904557 5909780 5904557 ID=MS.gene073336
chr8.1 mRNA 5904557 5909780 5904557 ID=MS.gene073336.t1;Parent=MS.gene073336
chr8.1 exon 5904557 5904690 5904557 ID=MS.gene073336.t1.exon1;Parent=MS.gene073336.t1
chr8.1 CDS 5904557 5904690 5904557 ID=cds.MS.gene073336.t1;Parent=MS.gene073336.t1
chr8.1 exon 5909105 5909780 5909105 ID=MS.gene073336.t1.exon2;Parent=MS.gene073336.t1
chr8.1 CDS 5909105 5909780 5909105 ID=cds.MS.gene073336.t1;Parent=MS.gene073336.t1
Gene Sequence

>MS.gene073336

ATGGTGGTGTTGGACGTGCACTCAAACCAGCTTAGGTCCCTCCCAAACTCCATCGGCTGCCTCTCTAGGCTCAAGCTTTTGAATGTCTCCGGCAACCTCATCCATACCCTTCCCAAAACAATTGAGAATTGCAGGTTTTATATTCATCTTTTCTCTCTCTTTTTTTTTTAGTGATAAAATTAAATAATTATATTTGCACTAGTTTTTCTTCATACAAACTGTGTTTGAATGAGTGTCTAGGCAATCTATGCTTCTTTTTATGTTCACACAAAAGTCTTAAAGCAAGAAGCCATTTTATTTATTTTTGGTCAAAAGCAACAAACCATTTATACATCAAGTATATATGTTGGATTTTGGTATGATATTCTGTCAACACTTCTAGCTTGTAAACAACACAGTGTGAACATCCATTATAATGTGCTCTATTTTTTTTTATTTTTTTTTTGCGTGTTTCTTAATTTATATATTTTTTTTTCTTTGGTGACACTATGATATGACTATAAAATTAGTAAATCCCACATCATGATCAGATTCGAAAGCTTAAGAAGTCATAAAGTATTAAATAGATTTATTTGTATGACGGGGGAATGATTTTAAAGATTTTTTTTTCCCTTTGGTGACAAGATTTTAAAGATATAGTTCTTGGTCAAAATTAAGTGGTCTATCTGTTTTTTAAGAGCAAAGAAAAATCTTACCGGTCTGTTTGTAAACATATTTGGTTATTAAAGTACTTTGGATTTAGTTTTCAAATAATTACATGGACAATCTAAACCATTTTTTTCCTCTTATTGATCACGACGTGTCAATTTCATATTAATAACATGTATTTCTTATAAACACCGGAGATATACGAATTTTTATACTGATCAAGTAACTGTCAAGAAAATGTACATAAATTAAATTCTTATTTTGTATGGTGGCGTATCAAGAAAGATGGATATTCTCATAAGAAGCATATTCATTGTCAGATATATTAAATTTCATTCAATACATGTGTTCCATATGTATATTTTTATTAATTTATATTGAAATGAAATTGAATGATAGGGGTGGAGAAGTAATAATAATTTTGAAGGCTCCATTTTGTCTTGTGTCATATGATCATACTAGTAACCTTTGACTTTTGTAATCAAAAAAGTGATTTGAACTCGGTCAAAACTCCATAATTCGAGAGTTTAGTTGAATACATATTTATAGTTTAATTATTTTAATATAAAATAAAATTTTGCAATAATTTTGCTTACATCTATTCTCTATCTATTCTCTAATTATAAAACTTAATGTCTACCAAAAATACAATCTTACCCCTTCTTAATTTTTTGACACGTCATCAAAATTATATCCTTTTGTGTCTTTTGCATCAACTTCCCCCTATTTTTTCTCTCCTAAAAACAAATTAAAACAAACTCACTCGATAAAACACACTAACTTAATCTTTTTTTAAACAACAAACAAACTTATTCTTAATCTCAATCAAAACAAATTTTCCTATAATTCAACTTCTAAATATCAAAGGAAATAAAAAAACAAATTACAATCTTCTATTCTCTAATTCTAAAATTAATGTCTACCAAAAATACAATCTTACCCCTTCTTAATTTTTTTTACACATCATCAAAAGTATATCCTTTTGTGTCTTTTGCATCAACTTCCCTATATTTTTTCTCTTAAAAATAAATTAAAACAAACTCACTCGGTAAAACACACTAACTTAATCTTTTTTTTAGAACAAACAAACTTAATCTTAATCCCAATCAAAAATAAATTTTCCTATAATCCAACTTTTAAATATCTAAAGAGTTAAAAAAAATTACAAAATATTTGCCTTTGTTTTTTCTTTATCTTTTTGGCTAAAGTGCAACTTTAGCCCCTTATCTTTCAAAAAGTTGCGATTTTGGCCCCCTAACTTTGAAAACTACAATTTTGGCCCCCTAACTTTGAAAACTGCTGAGAAGGCGACACGTGTCCAAAAAAAGGGGCCATTTTGAAAAGATAAGGGGCCATAATCGCAACATTTTGAAAAGATAAGGGGTCAATAGACATATTTCCCTTAAGTTAGGGGGTTAAAAGAGCATATTTCCCTAAACATGGGGGACCAAAATTGTAGTTTTCATACTTAAGGGGCCAAAATCGCAACTTTTTGAAAGATAAGGGGTCAGAGTTGCACTTTAGCCTATCTTTTTTTTGTCATGAAAAATCATATTAAATAAAAAGAAATAGATAAAGAGACTGAAGGCATTAGACCTGACTTAGGTACAACGAAAAACGGGGATACCACATAATAAATCAGATCAAGTGGATCGATCCAAATCTATCGTAACAAAATTCACTAATCAACAAACGAACCCGTACACGGGCACGAAACCGGGTCACAAAAAAATATGAAAAGTGAATCTCTAAGAAAAACAATTAATGGATCGACCGTCAGCACAATATCAAAATCCAAGTGTCAACAACTCCATAAACAAATTAAATAGCATAAAAGCTCTTTCGAGCTTGAAGAACCAGAGTGTAGACAAACAAAACACTTTGAAACCGGTAGATCTCAACATATTTGGAAACAACAGAGAATCAAAGAAATTAGGCCACTATGTCATATTATAAAATATTATTTTTTTATTGTTGTAAAATATTAATTATCATACCTTTAGAAAGATGACTCTAAAAAACACTGAAAACATGATAAATGAGTCACTAAATAATATTGTTGTACAATTCATACACGAGACTCATAACGACATCTTTATCAATAATGAAATCTTCACTATTTTAAACATTTCTACAATTTTTTTAGTTTACCACTTCATAATATTTGATAACAACTATTTCAATAATTTTTTCATGGACAAACTACACTAACATCCCTTAAGGTCTTCTTAAATAACACAAACACCCGCTCTATTTTTTAACTAAACACTAATCTCCCTTTTTTTTTTATCAAATTGACAAGCACTTCTCTTATAATATAACACGGTTTAAACTTTGTTAATTCCATTTGTTAATTACGAGTATGAAGTCATTTAATTTTCGACCACTTTTCTTTCCATTTTTCACTTGGTGATTTTTCTCAACTTATTGTTCCTCAGTCAATGTGGTTTAATTTTTAAATGGATATATCGAAGATGATCTTATTTTCATTGATCAACCACAATGTCCACCCACCAAAATTCTTCTCATTTTTGTATTCTCCTTTGATCTCTTCTGTAATTGCCGATGTTTGATTCTATTTGGTGGTAAAAACAAATGTTGTTATAGTTTCTCTATTGCAAAAAAAAAAAAAAAAACAAAAACCTCATTTAACTTAATTTTGAAAAGAGAAAACAGATACAAACAAATCAAGAAAAAACATCATTTAACTTAATTGTGAAAAGAGAAAATAGATACAAACAAACCAAAATAGCTGAAATTAAATTGTATATTAACAAAGTTATTGAAATGGATAAAATGAGGGGAGGTTGATGTGTTTGGAAAATTATAAGGGGTACTTATGTTCTTTAAGAAAATCTAAAGGGAAGTCAAAGTAATTTGTTCTTTTATCATTAATGTCAACTTTATCTTTAGTTTTTTTTTTTCCTGATTTTCTCAATTCATATAGTATTGCAATGCGCTTTGATGCATAGTTCACCACTTCGAATTAACCCGTGCGTAGCACGGGCCCGTGCTTAGCACGGGTTTGTTGCTAGTAGTATATGTATTTAATCAAAATTCAGTATCAAAAAAAATTTCTTTTAATTTTTGAATCTAATGTAGCAGTTGTACCCTACTCTGTGTGTAAACTTATTGGATTTCTTTTGTTGAGAAAGTACACTTTTTGGATTCTGCAATTCTTCATCGAATTGAACAGTTAAATTGACGTAGAGAATTTAAATACACTTTTGACTCTTTTATTTTTTTCATTCAAGATTTTGTCCTCATTTTTAAATTTGTAATTTTGATCCTCTAAAATTTAAAATTATGCAATTTTGATCGGCTATCAATTTTGCCATCCAACATTTAACATAAATTATGAGGTGGATGTTAAGTATTAATGTGGCAAAAACACGTAGATATGACGTGTAAGTAAACAAACACTTTGTAGCCACATCACTCTCACGTTTCTTTACCATGCTTGCACTTAGCGGCCACCTAAGCATCTATGTTAAATATCGGCCGGAGAGATCAAAATTGTCTAATTGGAAAAATTAGAAGATCAAAATTGAAGATTTAGAAAATTTAGAAAAATAGGAAGACTACAAGTCTATTTAAGCTTAAAAAGTAAAAAGTGAGACTCCCACCTGTCTTTTCTCTACATTTTTTTTATTTTGATTTTGTTTTAAAATTATTAATATTTTAAGAACTTGAAACTCCCCTTTCTACCAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATTAAGACTCTCTTAATAACTTTTGTCTCTTGCACTTTTTTAGACTCCTTGAATAATTTTTTTGTCAATTGCAATCTTATTAGTTTCAAAATTATTATGATTTCAATTAACATGTTGTATTCCATGAAATTTGACTCCACAGAGCCTTAGAAGATTTGAATCTAAATTTCAACAAGTTGAGCCAACTACCAGACACAATAGGGTTTGAGCTAATAAACCTAAAGAAATTATCAGTCAACTCTAACAAGCTGATCTTCCTTCCACGCTCCACATCTCACCTCACATCTCTAAAGGTTTTAGATGCACGACTTAACTGTCTTAGGTCTCTCCCAGAGGATCTTGAGAATCTCATCAACCTTGAAATCCTAAACGTGAGTCAGAACTTTCAATATTTGAATTCTATTCCATACTCTGTAGGACTTCTCTTGTCCCTCACTGAACTTGATGTTAGCTACAATAAGATCAAGTCCTTGCCTGATTCCATTGGTTGTCTTAACAAGCTTCAAAAGTTGAGTGTGGAAGGGAACCCTCTTACTTCACCACCACCAGAAGTGGTAGAGAGGGGATTGCATATAGTGAAGGAGTACTTGTGCAACAAGATGAATGCTGGTCATCAAAGCCCAACAAAGAAGAAGTCTTGGGTTGGAAGGTTGGTAAAGTATGGAACATTCAATGTTAGAAGTGGAGCTCGTGAAGAACATGAGGCTTTCATCCTCCCTGAGTATAATAGATCGATTGACGGACTTGCATCTCCCCGTCATATGGGGATGTTTTCACCTCGTCGGCTCTTCTCCCCTCGTAGTTACTTCAGCAACTGA
Protein sequence

>MS.gene073336.t1

MVVLDVHSNQLRSLPNSIGCLSRLKLLNVSGNLIHTLPKTIENCRALEDLNLNFNKLSQLPDTIGFELINLKKLSVNSNKLIFLPRSTSHLTSLKVLDARLNCLRSLPEDLENLINLEILNVSQNFQYLNSIPYSVGLLLSLTELDVSYNKIKSLPDSIGCLNKLQKLSVEGNPLTSPPPEVVERGLHIVKEYLCNKMNAGHQSPTKKKSWVGRLVKYGTFNVRSGAREEHEAFILPEYNRSIDGLASPRHMGMFSPRRLFSPRSYFSN