Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene040178.t1 | XP_003631022.1 | 99.2 | 374 | 3 | 0 | 1 | 374 | 1 | 374 | 2.10E-172 | 615.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene040178.t1 | Q9C5G0 | 52.4 | 378 | 165 | 6 | 1 | 374 | 1 | 367 | 2.3e-87 | 323.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene040178.t1 | G7LCD1 | 99.2 | 374 | 3 | 0 | 1 | 374 | 1 | 374 | 1.5e-172 | 615.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene040178.t1 | TF | C2H2 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene40528 | MS.gene040178 | PPI |
| MS.gene046944 | MS.gene040178 | PPI |
| MS.gene92360 | MS.gene040178 | PPI |
| MS.gene024963 | MS.gene040178 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene040178.t1 | MTR_8g106220 | 99.465 | 374 | 2 | 0 | 1 | 374 | 1 | 374 | 0.0 | 754 |
| MS.gene040178.t1 | MTR_8g106220 | 94.624 | 372 | 20 | 0 | 1 | 372 | 1 | 372 | 0.0 | 714 |
| MS.gene040178.t1 | MTR_8g106220 | 94.624 | 372 | 20 | 0 | 1 | 372 | 1 | 372 | 0.0 | 712 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene040178.t1 | AT1G30970 | 64.083 | 387 | 106 | 12 | 1 | 374 | 1 | 367 | 1.13e-155 | 442 |
| MS.gene040178.t1 | AT1G30970 | 62.943 | 367 | 103 | 12 | 1 | 354 | 1 | 347 | 1.13e-140 | 405 |
| MS.gene040178.t1 | AT1G30970 | 58.696 | 322 | 100 | 12 | 66 | 374 | 14 | 315 | 2.94e-102 | 305 |
Find 133 sgRNAs with CRISPR-Local
Find 360 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTGAAGGACCACCGGTATT+TGG | 0.170439 | 4.4:+921783 | None:intergenic |
| CAGCCTCTGTTTCCTGTTGT+TGG | 0.229086 | 4.4:-922172 | MS.gene040178:CDS |
| CTAACGAAGTCTACTTAGTT+TGG | 0.266871 | 4.4:-921710 | MS.gene040178:CDS |
| GGAAACAGAGGCTGTGAAAC+TGG | 0.286298 | 4.4:+922181 | None:intergenic |
| GGAGCTTTGTTTGAGATTAC+TGG | 0.297232 | 4.4:+921750 | None:intergenic |
| ACAGCATACATTGGTCGAAT+TGG | 0.303869 | 4.4:+922581 | None:intergenic |
| ATTTCTGTACTCTCTCTTCC+AGG | 0.309747 | 4.4:+924215 | None:intergenic |
| TGTTCCTATTGACGCACATT+TGG | 0.321496 | 4.4:-922059 | MS.gene040178:CDS |
| AACTCACATTCTTATGCTTC+TGG | 0.326574 | 4.4:-921807 | MS.gene040178:CDS |
| TCTCTTCCAGGTTTCGCATT+TGG | 0.327140 | 4.4:+924227 | None:intergenic |
| TTGAAGGACCACCGGTATTT+GGG | 0.341503 | 4.4:+921784 | None:intergenic |
| ACCAGGCCCTCCTAATGCTT+GGG | 0.344462 | 4.4:-922395 | MS.gene040178:CDS |
| CTTATCTATGGCTGCATCAA+TGG | 0.344752 | 4.4:+920603 | None:intergenic |
| CTCAAGTATCCTCTTATCTA+TGG | 0.345061 | 4.4:+920591 | None:intergenic |
| ACAAGTAGTTATCAAGCAAT+AGG | 0.347700 | 4.4:-922019 | MS.gene040178:CDS |
| TATGTCCATTCACGTTCTTC+AGG | 0.364615 | 4.4:-924998 | MS.gene040178:CDS |
| GACATGGGTGCAGCGGAAAA+TGG | 0.372457 | 4.4:+922121 | None:intergenic |
| TGGAATGGTGCCACCTCCTA+TGG | 0.375927 | 4.4:-922636 | MS.gene040178:CDS |
| ACATTCTGAACAGGAAATAA+TGG | 0.376562 | 4.4:+922289 | None:intergenic |
| AATGTCTTTAACAAAATATC+AGG | 0.390175 | 4.4:-921562 | MS.gene040178:CDS |
| TACCAGGCCCTCCTAATGCT+TGG | 0.392438 | 4.4:-922396 | MS.gene040178:CDS |
| CAGCATACATTGGTCGAATT+GGG | 0.393166 | 4.4:+922582 | None:intergenic |
| AGTACAGAAATTGAAATATA+CGG | 0.394552 | 4.4:-924203 | MS.gene040178:CDS |
| ATCCCATCAACCCCATTTGC+AGG | 0.396537 | 4.4:-922659 | MS.gene040178:CDS |
| GTTCCTATTGACGCACATTT+GGG | 0.398845 | 4.4:-922058 | MS.gene040178:CDS |
| GGCACCATTCCACCTGCAAA+TGG | 0.405114 | 4.4:+922647 | None:intergenic |
| CCACCTGCAAATGGGGTTGA+TGG | 0.408036 | 4.4:+922656 | None:intergenic |
| TAACGAAGTCTACTTAGTTT+GGG | 0.411151 | 4.4:-921709 | MS.gene040178:CDS |
| GAATTGAAACAGTTGGAGGC+TGG | 0.414100 | 4.4:+922338 | None:intergenic |
| CATAAGAAGCTTTCCACTGC+TGG | 0.419731 | 4.4:-925024 | MS.gene040178:CDS |
| GGAACAACTCCCCAAGCATT+AGG | 0.420757 | 4.4:+922385 | None:intergenic |
| TATCAAGCAATAGGGATTCC+AGG | 0.422402 | 4.4:-922010 | MS.gene040178:intron |
| GGGGATTCCGCCAGATGTCT+TGG | 0.430401 | 4.4:-924174 | MS.gene040178:CDS |
| GGTGTAGATGAAGGCAGTCC+AGG | 0.433874 | 4.4:+922211 | None:intergenic |
| ATGTGGTTATTTCCAACAAC+AGG | 0.437841 | 4.4:+922160 | None:intergenic |
| AATACCGGTGGTCCTTCAAT+TGG | 0.438291 | 4.4:-921780 | MS.gene040178:CDS |
| TAATGAGCAGCCAAGACATC+TGG | 0.442885 | 4.4:+924164 | None:intergenic |
| ATGCCCAAATGTGCGTCAAT+AGG | 0.443049 | 4.4:+922055 | None:intergenic |
| GATGTCTTGGCTGCTCATTA+TGG | 0.444172 | 4.4:-924161 | MS.gene040178:CDS |
| ATTTGACGACGAGAAGATCT+TGG | 0.447592 | 4.4:-925088 | MS.gene040178:CDS |
| GCACCATTCCACCTGCAAAT+GGG | 0.451889 | 4.4:+922648 | None:intergenic |
| GGTTGATCGTGGAGGATATC+CGG | 0.456595 | 4.4:+922610 | None:intergenic |
| AACTAAGTAGACTTCGTTAG+TGG | 0.463249 | 4.4:+921713 | None:intergenic |
| GGAGGCCTCACATTCTGAAC+AGG | 0.464202 | 4.4:+922280 | None:intergenic |
| AATTGAAATATACGGAATGC+AGG | 0.468518 | 4.4:-924195 | MS.gene040178:CDS |
| AATTGAAACAGTTGGAGGCT+GGG | 0.475617 | 4.4:+922339 | None:intergenic |
| TATGCTTCTGGCCCAAATAC+CGG | 0.477985 | 4.4:-921795 | MS.gene040178:CDS |
| GAAGAAGCGCGTTGCTTCAA+AGG | 0.480211 | 4.4:-925136 | MS.gene040178:CDS |
| TTGATGCAGCCATAGATAAG+AGG | 0.483071 | 4.4:-920600 | MS.gene040178:CDS |
| AACATGACACTTAAAGTGCT+TGG | 0.485491 | 4.4:+925050 | None:intergenic |
| CCCCAAGCATTAGGAGGGCC+TGG | 0.491220 | 4.4:+922394 | None:intergenic |
| GGTTGCTGTGGGTATTGAAC+TGG | 0.492743 | 4.4:+922310 | None:intergenic |
| GGAAACCATGGCTGAGGTCG+AGG | 0.492794 | 4.4:+922361 | None:intergenic |
| TTGTTTGAGATTACTGGTGG+AGG | 0.495717 | 4.4:+921756 | None:intergenic |
| CAAGTAGTTATCAAGCAATA+GGG | 0.496128 | 4.4:-922018 | MS.gene040178:CDS |
| AGTGTACCATCAATAACTCC+TGG | 0.497457 | 4.4:-922094 | MS.gene040178:CDS |
| AGATATAATCCTGCTGTACC+AGG | 0.505163 | 4.4:-922412 | MS.gene040178:CDS |
| TTAGGAGGGCCTGGTACAGC+AGG | 0.509971 | 4.4:+922403 | None:intergenic |
| GAAAGCCCAGGAGTTATTGA+TGG | 0.511119 | 4.4:+922088 | None:intergenic |
| AGGGTGCCAAATGCGAAACC+TGG | 0.511393 | 4.4:-924233 | MS.gene040178:CDS |
| GGCTGGGGAAACCATGGCTG+AGG | 0.511844 | 4.4:+922355 | None:intergenic |
| CAATCTCAGATTACTCCTCC+TGG | 0.513612 | 4.4:-922229 | MS.gene040178:CDS |
| GTAATCTGAGATTGTAGTGC+AGG | 0.514880 | 4.4:+922238 | None:intergenic |
| CACCATTCCACCTGCAAATG+GGG | 0.522457 | 4.4:+922649 | None:intergenic |
| ACTGGTGGAGGTCCAATTGA+AGG | 0.524549 | 4.4:+921768 | None:intergenic |
| CATTGGTCGAATTGGGCCCA+TGG | 0.527541 | 4.4:+922589 | None:intergenic |
| TTCCACCTCGACCTCAGCCA+TGG | 0.530637 | 4.4:-922366 | MS.gene040178:CDS |
| AACCCCATTTGCAGGTGGAA+TGG | 0.531347 | 4.4:-922651 | MS.gene040178:CDS |
| ATACTTGAGAGCAGGCTAGC+TGG | 0.531564 | 4.4:-920577 | MS.gene040178:CDS |
| TGCTGTGGGTATTGAACTGG+AGG | 0.539371 | 4.4:+922313 | None:intergenic |
| TTATCTGAATTTCGATGGGT+AGG | 0.539617 | 4.4:-925161 | None:intergenic |
| CCAGGCCCTCCTAATGCTTG+GGG | 0.544705 | 4.4:-922394 | MS.gene040178:CDS |
| ATAAGAGGATACTTGAGAGC+AGG | 0.545989 | 4.4:-920585 | MS.gene040178:CDS |
| TTAGTGGCAGGCTGAGTAGC+GGG | 0.546294 | 4.4:+921729 | None:intergenic |
| GCTGCTCATTATGGAGATGA+AGG | 0.547626 | 4.4:-924152 | MS.gene040178:intron |
| ATTGAAACAGTTGGAGGCTG+GGG | 0.549843 | 4.4:+922340 | None:intergenic |
| GCTTTGTTTGAGATTACTGG+TGG | 0.553404 | 4.4:+921753 | None:intergenic |
| GGAGGAGGAATTGAAACAGT+TGG | 0.554450 | 4.4:+922331 | None:intergenic |
| CACCTGCAAATGGGGTTGAT+GGG | 0.560328 | 4.4:+922657 | None:intergenic |
| AAGTAGACTTCGTTAGTGGC+AGG | 0.561688 | 4.4:+921717 | None:intergenic |
| GGAACATTTGAAGAAAGCCC+AGG | 0.564804 | 4.4:+922076 | None:intergenic |
| ATTGAAATATACGGAATGCA+GGG | 0.566703 | 4.4:-924194 | MS.gene040178:CDS |
| GGTTGATGGGATGTCCACCT+TGG | 0.568451 | 4.4:+922670 | None:intergenic |
| GGTTCATGATGAAAGTAGCC+AGG | 0.569158 | 4.4:-921541 | MS.gene040178:intron |
| GGAATGGTGCCACCTCCTAT+GGG | 0.569199 | 4.4:-922635 | MS.gene040178:CDS |
| GGATGACGAGGCAATGTCCA+TGG | 0.575495 | 4.4:-921688 | MS.gene040178:intron |
| GTGCCACCTCCTATGGGTAC+CGG | 0.575683 | 4.4:-922629 | MS.gene040178:CDS |
| GTGGACCTGAAGAACGTGAA+TGG | 0.577922 | 4.4:+924993 | None:intergenic |
| TATTTCCTGTTCAGAATGTG+AGG | 0.578258 | 4.4:-922285 | MS.gene040178:CDS |
| GGGACAGGAGGTGTAGATGA+AGG | 0.578656 | 4.4:+922202 | None:intergenic |
| GGCTGTGAAACTGGGACAGG+AGG | 0.579075 | 4.4:+922190 | None:intergenic |
| ACAACTCCCCAAGCATTAGG+AGG | 0.584661 | 4.4:+922388 | None:intergenic |
| GAAACAGAGGCTGTGAAACT+GGG | 0.585954 | 4.4:+922182 | None:intergenic |
| GGAGGATATCCGGTACCCAT+AGG | 0.590455 | 4.4:+922620 | None:intergenic |
| AATGGACATACCACCAGCAG+TGG | 0.591379 | 4.4:+925011 | None:intergenic |
| AGAGGCTGTGAAACTGGGAC+AGG | 0.593167 | 4.4:+922187 | None:intergenic |
| ATTGGGCCCATGGTTGATCG+TGG | 0.597019 | 4.4:+922599 | None:intergenic |
| GAGCAGGCTAGCTGGTCGCA+TGG | 0.599459 | 4.4:-920569 | MS.gene040178:CDS |
| CTACTTAGTTTGGGATGACG+AGG | 0.603278 | 4.4:-921700 | MS.gene040178:CDS |
| GAAGTAGTTGATGGCAATGG+AGG | 0.606455 | 4.4:+922262 | None:intergenic |
| ATATCCTCCACGATCAACCA+TGG | 0.608314 | 4.4:-922606 | MS.gene040178:CDS |
| AGCGCGTTGCTTCAAAGGTG+TGG | 0.608922 | 4.4:-925131 | MS.gene040178:CDS |
| AAGAAGCTTTCCACTGCTGG+TGG | 0.609186 | 4.4:-925021 | MS.gene040178:CDS |
| AGTGCAGGTGAAGTAGTTGA+TGG | 0.611818 | 4.4:+922253 | None:intergenic |
| GTGTACCATCAATAACTCCT+GGG | 0.613682 | 4.4:-922093 | MS.gene040178:CDS |
| GGATATCCGGTACCCATAGG+AGG | 0.617032 | 4.4:+922623 | None:intergenic |
| GTTGGAGGCTGGGGAAACCA+TGG | 0.620715 | 4.4:+922349 | None:intergenic |
| ACTTGAAGACATGGGTGCAG+CGG | 0.621248 | 4.4:+922114 | None:intergenic |
| AGGTCCAATTGAAGGACCAC+CGG | 0.621456 | 4.4:+921776 | None:intergenic |
| AACCATGGCTGAGGTCGAGG+TGG | 0.623423 | 4.4:+922364 | None:intergenic |
| GGAGGAATTGAAACAGTTGG+AGG | 0.628063 | 4.4:+922334 | None:intergenic |
| GTTAGTGGCAGGCTGAGTAG+CGG | 0.628691 | 4.4:+921728 | None:intergenic |
| TGATGGTACACTTGAAGACA+TGG | 0.629248 | 4.4:+922105 | None:intergenic |
| GGAAAATGGTGAACTTTGAG+TGG | 0.629363 | 4.4:+922135 | None:intergenic |
| GGTGAAGTAGTTGATGGCAA+TGG | 0.630819 | 4.4:+922259 | None:intergenic |
| TTGAAATATACGGAATGCAG+GGG | 0.631086 | 4.4:-924193 | MS.gene040178:CDS |
| TATCCTCCACGATCAACCAT+GGG | 0.633440 | 4.4:-922605 | MS.gene040178:CDS |
| ACAGGAAATAATGGTTGCTG+TGG | 0.636390 | 4.4:+922298 | None:intergenic |
| CCATCAACCCCATTTGCAGG+TGG | 0.645938 | 4.4:-922656 | MS.gene040178:CDS |
| TGTGGGTATTGAACTGGAGG+AGG | 0.646369 | 4.4:+922316 | None:intergenic |
| TGAGCAGCCAAGACATCTGG+CGG | 0.647342 | 4.4:+924167 | None:intergenic |
| TATCCGGTACCCATAGGAGG+TGG | 0.658522 | 4.4:+922626 | None:intergenic |
| CAACTCCCCAAGCATTAGGA+GGG | 0.662716 | 4.4:+922389 | None:intergenic |
| GTAGATGAAGGCAGTCCAGG+AGG | 0.667864 | 4.4:+922214 | None:intergenic |
| GCTTCTGGCCCAAATACCGG+TGG | 0.670008 | 4.4:-921792 | MS.gene040178:CDS |
| GGGCCCATGGTTGATCGTGG+AGG | 0.671495 | 4.4:+922602 | None:intergenic |
| TCTATCAAAGACAGCCAAGG+TGG | 0.677129 | 4.4:-922684 | MS.gene040178:CDS |
| TGTTCTATCAAAGACAGCCA+AGG | 0.679339 | 4.4:-922687 | MS.gene040178:CDS |
| TTTCCAACAACAGGAAACAG+AGG | 0.682132 | 4.4:+922169 | None:intergenic |
| CAGGAAATAATGGTTGCTGT+GGG | 0.694551 | 4.4:+922299 | None:intergenic |
| TGTTGTTGGAAATAACCACA+TGG | 0.708917 | 4.4:-922158 | MS.gene040178:CDS |
| GTGAACTTTGAGTGGCCATG+TGG | 0.742581 | 4.4:+922143 | None:intergenic |
| GATGGTACACTTGAAGACAT+GGG | 0.786065 | 4.4:+922106 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATAATTATAATTACCAAA+AGG | + | chr4.4:924703-924722 | None:intergenic | 10.0% |
| !! | TTTAATTGTTATGATATTTA+TGG | - | chr4.4:920904-920923 | MS.gene040178:intron | 10.0% |
| !!! | AATCATTACAATTTATTTTA+TGG | - | chr4.4:924927-924946 | MS.gene040178:intron | 10.0% |
| !!! | TTGAATTTTTTTTTTTTCAT+TGG | - | chr4.4:924055-924074 | MS.gene040178:intron | 10.0% |
| !!! | TTTTTTTTTTTTTAGTAAAG+TGG | + | chr4.4:922398-922417 | None:intergenic | 10.0% |
| !! | AACAATAGATAAAATAAAGT+CGG | - | chr4.4:921143-921162 | MS.gene040178:intron | 15.0% |
| !! | ATATCATAACAATTAAAATG+AGG | + | chr4.4:920901-920920 | None:intergenic | 15.0% |
| !! | CGAATATAAAACAAATAATA+TGG | - | chr4.4:922321-922340 | MS.gene040178:CDS | 15.0% |
| !! | CTCGTAAAAAAAAATAAAAA+AGG | + | chr4.4:922953-922972 | None:intergenic | 15.0% |
| !!! | GTATTATAAAAGGTATATAT+AGG | - | chr4.4:921836-921855 | MS.gene040178:intron | 15.0% |
| !! | AAAATCACATGAATCATATA+AGG | + | chr4.4:923838-923857 | None:intergenic | 20.0% |
| !! | AATGTCTTTAACAAAATATC+AGG | - | chr4.4:924146-924165 | MS.gene040178:intron | 20.0% |
| !! | AGTACAGAAATTGAAATATA+CGG | - | chr4.4:921505-921524 | MS.gene040178:intron | 20.0% |
| !! | ATTCGAATTCTTATTCTATT+TGG | - | chr4.4:923178-923197 | MS.gene040178:intron | 20.0% |
| !! | ATTGAAATTGATCATTAATC+TGG | - | chr4.4:922704-922723 | MS.gene040178:intron | 20.0% |
| !! | CAATTTCTTCATTAACATAA+AGG | + | chr4.4:922283-922302 | None:intergenic | 20.0% |
| !! | GATAACTAATTAACTAACTA+CGG | + | chr4.4:921806-921825 | None:intergenic | 20.0% |
| !! | GTTTGATATAGTAAAAAACT+TGG | - | chr4.4:923780-923799 | MS.gene040178:intron | 20.0% |
| !! | TGGAAGTTACATTTATTTAA+AGG | - | chr4.4:924611-924630 | MS.gene040178:intron | 20.0% |
| !! | TTAAAATGGAAAATTAACAG+AGG | + | chr4.4:921695-921714 | None:intergenic | 20.0% |
| !! | TTGAAATTGATCATTAATCT+GGG | - | chr4.4:922705-922724 | MS.gene040178:intron | 20.0% |
| !! | TTGTATACACATATTAAAAG+AGG | - | chr4.4:924388-924407 | MS.gene040178:intron | 20.0% |
| !! | TTGTTTACACATATTAAATG+AGG | - | chr4.4:924276-924295 | MS.gene040178:intron | 20.0% |
| !! | TTTAGTATTTATGCTTAGTT+TGG | - | chr4.4:920999-921018 | MS.gene040178:intron | 20.0% |
| !!! | AAACACTTTAAAAGAATAGA+TGG | - | chr4.4:924430-924449 | MS.gene040178:intron | 20.0% |
| !!! | ACAACTTTTTCTTTTTCTTT+TGG | - | chr4.4:921026-921045 | MS.gene040178:intron | 20.0% |
| !!! | ATCTATTCTTTTAAAGTGTT+TGG | + | chr4.4:924431-924450 | None:intergenic | 20.0% |
| !!! | ATGTATATGTGATTTTTGTT+GGG | - | chr4.4:924801-924820 | MS.gene040178:intron | 20.0% |
| !!! | ATTATTTCGTTTTTCTTTTC+AGG | - | chr4.4:921455-921474 | MS.gene040178:intron | 20.0% |
| !!! | TATGTATATGTGATTTTTGT+TGG | - | chr4.4:924800-924819 | MS.gene040178:intron | 20.0% |
| !!! | TATGTATTATTCTGTTTTGT+TGG | - | chr4.4:922823-922842 | MS.gene040178:intron | 20.0% |
| !!! | TCTAGTGCATTAATATTTTA+AGG | + | chr4.4:921419-921438 | None:intergenic | 20.0% |
| !!! | TTATTTCGTTTTTCTTTTCA+GGG | - | chr4.4:921456-921475 | MS.gene040178:intron | 20.0% |
| ! | AAAAACGAATGAAAGAGAAA+AGG | + | chr4.4:920766-920785 | None:intergenic | 25.0% |
| ! | AAAACGAATGAAAGAGAAAA+GGG | + | chr4.4:920765-920784 | None:intergenic | 25.0% |
| ! | AAAGAAAATAAAACGTTACC+TGG | + | chr4.4:923719-923738 | None:intergenic | 25.0% |
| ! | AAATGTTTAACAGCATACAT+TGG | + | chr4.4:923139-923158 | None:intergenic | 25.0% |
| ! | AAGGGTAAAAAGAATAACAT+TGG | + | chr4.4:924837-924856 | None:intergenic | 25.0% |
| ! | AATAAATGTAACTTCCATTC+AGG | + | chr4.4:924608-924627 | None:intergenic | 25.0% |
| ! | ATAATCAAGTATGTACATCA+CGG | + | chr4.4:921379-921398 | None:intergenic | 25.0% |
| ! | ATGTTAATGAAGAAATTGAC+TGG | - | chr4.4:922285-922304 | MS.gene040178:CDS | 25.0% |
| ! | CTACAATGGAATCATTAAAA+TGG | + | chr4.4:921709-921728 | None:intergenic | 25.0% |
| ! | TACATATGCTCAGATAAATT+AGG | - | chr4.4:921296-921315 | MS.gene040178:intron | 25.0% |
| ! | TCAATAAGAACTATGAAACA+AGG | + | chr4.4:921613-921632 | None:intergenic | 25.0% |
| ! | TGAAATTGATCATTAATCTG+GGG | - | chr4.4:922706-922725 | MS.gene040178:intron | 25.0% |
| ! | TGTACTTGTAGTAGTTATTA+AGG | + | chr4.4:921654-921673 | None:intergenic | 25.0% |
| ! | TTAGTTAATTAGTTATCTGC+CGG | - | chr4.4:921809-921828 | MS.gene040178:CDS | 25.0% |
| !! | AAAAGGTATATATAGGAGTT+AGG | - | chr4.4:921843-921862 | MS.gene040178:intron | 25.0% |
| !! | AAAGGTATATATAGGAGTTA+GGG | - | chr4.4:921844-921863 | MS.gene040178:intron | 25.0% |
| !! | ACCACAACAAACAAATATTT+TGG | + | chr4.4:925025-925044 | None:intergenic | 25.0% |
| !! | CATACTACCTTTTTATTACT+TGG | - | chr4.4:924195-924214 | MS.gene040178:CDS | 25.0% |
| !! | TCCAAAATATTTGTTTGTTG+TGG | - | chr4.4:925021-925040 | MS.gene040178:CDS | 25.0% |
| !! | TTCTTATTCTATTTGGAATG+TGG | - | chr4.4:923185-923204 | MS.gene040178:intron | 25.0% |
| !! | TTTCTTTTGGTACAATAGTT+TGG | - | chr4.4:921039-921058 | MS.gene040178:intron | 25.0% |
| !! | TTTTATTGTGTACAAATGCT+GGG | + | chr4.4:924777-924796 | None:intergenic | 25.0% |
| !!! | GCTATTTTACTAATTCCTTT+TGG | - | chr4.4:924685-924704 | MS.gene040178:intron | 25.0% |
| !!! | TCTCTTTCATTCGTTTTTTA+GGG | - | chr4.4:920768-920787 | MS.gene040178:intron | 25.0% |
| !!! | TTCTCTTTCATTCGTTTTTT+AGG | - | chr4.4:920767-920786 | MS.gene040178:intron | 25.0% |
| AAACTTTCGAATCAAGCAAA+GGG | + | chr4.4:924855-924874 | None:intergenic | 30.0% | |
| AAATTCAATTCACTCAAGAG+TGG | + | chr4.4:920982-921001 | None:intergenic | 30.0% | |
| AACCTATCCGTGAAAATAAA+TGG | + | chr4.4:921950-921969 | None:intergenic | 30.0% | |
| AAGAGAAAAGGGAATATACT+TGG | + | chr4.4:920754-920773 | None:intergenic | 30.0% | |
| AAGGTATATATAGGAGTTAG+GGG | - | chr4.4:921845-921864 | MS.gene040178:intron | 30.0% | |
| AATTGAAATATACGGAATGC+AGG | - | chr4.4:921513-921532 | MS.gene040178:intron | 30.0% | |
| ACAAGTAGTTATCAAGCAAT+AGG | - | chr4.4:923689-923708 | MS.gene040178:intron | 30.0% | |
| ACATCTGTTACAGTTATACA+GGG | + | chr4.4:921765-921784 | None:intergenic | 30.0% | |
| ACATTCTGAACAGGAAATAA+TGG | + | chr4.4:923422-923441 | None:intergenic | 30.0% | |
| AGCAACTCCAAGTAATAAAA+AGG | + | chr4.4:924205-924224 | None:intergenic | 30.0% | |
| AGTTGCAGTTATTATAAGAC+TGG | - | chr4.4:922420-922439 | MS.gene040178:intron | 30.0% | |
| ATTGAAATATACGGAATGCA+GGG | - | chr4.4:921514-921533 | MS.gene040178:intron | 30.0% | |
| ATTTATCTGAGCATATGTAC+TGG | + | chr4.4:921295-921314 | None:intergenic | 30.0% | |
| CAAGTAGTTATCAAGCAATA+GGG | - | chr4.4:923690-923709 | MS.gene040178:intron | 30.0% | |
| GAAATTGATCATTAATCTGG+GGG | - | chr4.4:922707-922726 | MS.gene040178:intron | 30.0% | |
| GTTGCAGTTATTATAAGACT+GGG | - | chr4.4:922421-922440 | MS.gene040178:intron | 30.0% | |
| TAACGAAGTCTACTTAGTTT+GGG | - | chr4.4:923999-924018 | MS.gene040178:intron | 30.0% | |
| TAATCAAGTATGTACATCAC+GGG | + | chr4.4:921378-921397 | None:intergenic | 30.0% | |
| TACATCTGTTACAGTTATAC+AGG | + | chr4.4:921766-921785 | None:intergenic | 30.0% | |
| TAGCTACGTATATCTTTAGA+TGG | + | chr4.4:924669-924688 | None:intergenic | 30.0% | |
| TAGTTAATTAGTTATCTGCC+GGG | - | chr4.4:921810-921829 | MS.gene040178:CDS | 30.0% | |
| TATCCGTGAAAATAAATGGT+CGG | + | chr4.4:921946-921965 | None:intergenic | 30.0% | |
| TTGTTTATGCATGCTAAAAG+AGG | - | chr4.4:924498-924517 | MS.gene040178:intron | 30.0% | |
| ! | AATCTCAAGGATCTGAAATA+TGG | - | chr4.4:922222-922241 | MS.gene040178:CDS | 30.0% |
| ! | ACTAGTCTACTATTGTTTCA+TGG | - | chr4.4:924081-924100 | MS.gene040178:intron | 30.0% |
| ! | CTTTTATTGTGTACAAATGC+TGG | + | chr4.4:924778-924797 | None:intergenic | 30.0% |
| ! | TATGTGATTTTTGTTGGGTT+TGG | - | chr4.4:924806-924825 | MS.gene040178:intron | 30.0% |
| ! | TTTGCTTGATTCGAAAGTTT+GGG | - | chr4.4:924855-924874 | MS.gene040178:intron | 30.0% |
| !! | ATTTATTTTCACGGATAGGT+TGG | - | chr4.4:921949-921968 | MS.gene040178:intron | 30.0% |
| !! | TCAGTTTTTCGGTTGTATAA+GGG | + | chr4.4:922595-922614 | None:intergenic | 30.0% |
| !! | TTCAGTTTTTCGGTTGTATA+AGG | + | chr4.4:922596-922615 | None:intergenic | 30.0% |
| !! | TTGTTTGTTGTGGTAATTTG+TGG | - | chr4.4:925031-925050 | MS.gene040178:CDS | 30.0% |
| !! | TTTATTTTCACGGATAGGTT+GGG | - | chr4.4:921950-921969 | MS.gene040178:intron | 30.0% |
| !! | TTTTGATGCTTTGTTACTGT+AGG | - | chr4.4:924113-924132 | MS.gene040178:intron | 30.0% |
| !!! | CAAACAAATATTTTGGAGCA+TGG | + | chr4.4:925018-925037 | None:intergenic | 30.0% |
| !!! | GTTTTTTGTTCAACCCTAAT+GGG | - | chr4.4:922674-922693 | MS.gene040178:CDS | 30.0% |
| AAAAGGTAGTATGACTTACC+TGG | + | chr4.4:924188-924207 | None:intergenic | 35.0% | |
| AAATGTAACTTCCATTCAGG+TGG | + | chr4.4:924605-924624 | None:intergenic | 35.0% | |
| AACTAAGTAGACTTCGTTAG+TGG | + | chr4.4:923998-924017 | None:intergenic | 35.0% | |
| AACTCACATTCTTATGCTTC+TGG | - | chr4.4:923901-923920 | MS.gene040178:intron | 35.0% | |
| AAGCTATGCTTCCAATTTAG+GGG | - | chr4.4:924643-924662 | MS.gene040178:intron | 35.0% | |
| AATGAAAATATGAGCAGACC+AGG | + | chr4.4:922626-922645 | None:intergenic | 35.0% | |
| AATGTAACTTCCATTCAGGT+GGG | + | chr4.4:924604-924623 | None:intergenic | 35.0% | |
| AGGTATATATAGGAGTTAGG+GGG | - | chr4.4:921846-921865 | MS.gene040178:intron | 35.0% | |
| ATTGTAGTGTCAGAAATAGG+AGG | - | chr4.4:921722-921741 | MS.gene040178:CDS | 35.0% | |
| CAAACTTTCGAATCAAGCAA+AGG | + | chr4.4:924856-924875 | None:intergenic | 35.0% | |
| CAAGCTATGCTTCCAATTTA+GGG | - | chr4.4:924642-924661 | MS.gene040178:intron | 35.0% | |
| CATCTGTTACAGTTATACAG+GGG | + | chr4.4:921764-921783 | None:intergenic | 35.0% | |
| CCATCTGATTTCTTATAGGT+GGG | - | chr4.4:923869-923888 | MS.gene040178:intron | 35.0% | |
| CCTTAGTTTACAACTTGCAT+GGG | - | chr4.4:922103-922122 | MS.gene040178:CDS | 35.0% | |
| CTAACGAAGTCTACTTAGTT+TGG | - | chr4.4:923998-924017 | MS.gene040178:intron | 35.0% | |
| CTCAAGTATCCTCTTATCTA+TGG | + | chr4.4:925120-925139 | None:intergenic | 35.0% | |
| GAAAATAAATGGTCGGAGAT+GGG | + | chr4.4:921939-921958 | None:intergenic | 35.0% | |
| GAATCATATAAGGTCAACTG+AGG | + | chr4.4:923828-923847 | None:intergenic | 35.0% | |
| GTATATGTATACAGCGAACA+TGG | - | chr4.4:922514-922533 | MS.gene040178:intron | 35.0% | |
| TATTTCCTGTTCAGAATGTG+AGG | - | chr4.4:923423-923442 | MS.gene040178:intron | 35.0% | |
| TCAAGCTATGCTTCCAATTT+AGG | - | chr4.4:924641-924660 | MS.gene040178:intron | 35.0% | |
| TCCATCTGATTTCTTATAGG+TGG | - | chr4.4:923868-923887 | MS.gene040178:intron | 35.0% | |
| TCCATTGTAGTGTCAGAAAT+AGG | - | chr4.4:921719-921738 | MS.gene040178:CDS | 35.0% | |
| TCGTCCATCTGATTTCTTAT+AGG | - | chr4.4:923865-923884 | MS.gene040178:intron | 35.0% | |
| TGAAAATAAATGGTCGGAGA+TGG | + | chr4.4:921940-921959 | None:intergenic | 35.0% | |
| TGTTGTTGGAAATAACCACA+TGG | - | chr4.4:923550-923569 | MS.gene040178:intron | 35.0% | |
| TTCAATGCATAGTCCCATTA+GGG | + | chr4.4:922690-922709 | None:intergenic | 35.0% | |
| TTGAAATATACGGAATGCAG+GGG | - | chr4.4:921515-921534 | MS.gene040178:intron | 35.0% | |
| TTGTAAACTAAGGCAGAACT+TGG | + | chr4.4:922096-922115 | None:intergenic | 35.0% | |
| TTGTAGTGTCAGAAATAGGA+GGG | - | chr4.4:921723-921742 | MS.gene040178:CDS | 35.0% | |
| TTGTTGGTATTATTGACGTC+AGG | - | chr4.4:922839-922858 | MS.gene040178:intron | 35.0% | |
| TTTCAATGCATAGTCCCATT+AGG | + | chr4.4:922691-922710 | None:intergenic | 35.0% | |
| ! | AACATGACACTTAAAGTGCT+TGG | + | chr4.4:920661-920680 | None:intergenic | 35.0% |
| ! | ACGGCAAACAAAAAAAGTGT+AGG | - | chr4.4:924338-924357 | MS.gene040178:intron | 35.0% |
| ! | AGGTCATCTGTTCAGTTTTT+CGG | + | chr4.4:922606-922625 | None:intergenic | 35.0% |
| ! | ATCTCCATTTTCCAAGATCA+AGG | - | chr4.4:922357-922376 | MS.gene040178:CDS | 35.0% |
| ! | ATGTGGTTATTTCCAACAAC+AGG | + | chr4.4:923551-923570 | None:intergenic | 35.0% |
| ! | CTTTGCTTGATTCGAAAGTT+TGG | - | chr4.4:924854-924873 | MS.gene040178:intron | 35.0% |
| ! | GGTCTGCTCATATTTTCATT+CGG | - | chr4.4:922626-922645 | MS.gene040178:CDS | 35.0% |
| ! | GGTTGTATAAGGGTTAGTAA+TGG | + | chr4.4:922585-922604 | None:intergenic | 35.0% |
| ! | TACCTTTTATAATACCCACC+CGG | + | chr4.4:921831-921850 | None:intergenic | 35.0% |
| ! | TCAAGGATCTGAAATATGGA+TGG | - | chr4.4:922226-922245 | MS.gene040178:CDS | 35.0% |
| ! | TCATTCGGTTTTTCCAGTTT+GGG | - | chr4.4:922641-922660 | MS.gene040178:CDS | 35.0% |
| ! | TTCATTCGGTTTTTCCAGTT+TGG | - | chr4.4:922640-922659 | MS.gene040178:CDS | 35.0% |
| ! | TTGCTTGATTCGAAAGTTTG+GGG | - | chr4.4:924856-924875 | MS.gene040178:intron | 35.0% |
| !! | ATTCGAAAGTTTGGGGTTTT+GGG | - | chr4.4:924863-924882 | MS.gene040178:intron | 35.0% |
| !! | CTCCCAATTTGTTGTTACAA+GGG | + | chr4.4:921322-921341 | None:intergenic | 35.0% |
| !! | GACCATTTATTTTCACGGAT+AGG | - | chr4.4:921945-921964 | MS.gene040178:intron | 35.0% |
| !! | GGAGCGTTTTTGTACAATTT+AGG | - | chr4.4:922860-922879 | MS.gene040178:intron | 35.0% |
| !! | TCCTATTTCTGACACTACAA+TGG | + | chr4.4:921723-921742 | None:intergenic | 35.0% |
| !! | TCTCCGACCATTTATTTTCA+CGG | - | chr4.4:921940-921959 | MS.gene040178:intron | 35.0% |
| !!! | GGTTTTTTGTTCAACCCTAA+TGG | - | chr4.4:922673-922692 | MS.gene040178:CDS | 35.0% |
| AAATGGATAGCAGAGCAAGA+AGG | - | chr4.4:922003-922022 | MS.gene040178:intron | 40.0% | |
| AAGACAGTGATGCAACAAGT+CGG | + | chr4.4:922474-922493 | None:intergenic | 40.0% | |
| AAGCATAAAGCCTACTCATC+TGG | + | chr4.4:924239-924258 | None:intergenic | 40.0% | |
| AATTGAAACAGTTGGAGGCT+GGG | + | chr4.4:923372-923391 | None:intergenic | 40.0% | |
| ACAGCATACATTGGTCGAAT+TGG | + | chr4.4:923130-923149 | None:intergenic | 40.0% | |
| ACAGGAAATAATGGTTGCTG+TGG | + | chr4.4:923413-923432 | None:intergenic | 40.0% | |
| ACGAATGAGCAAAAGTCTGT+TGG | + | chr4.4:924905-924924 | None:intergenic | 40.0% | |
| ACTTCAACCATCCTTGATCT+TGG | + | chr4.4:922371-922390 | None:intergenic | 40.0% | |
| AGAGTTTGGATCTCTTGCAT+AGG | - | chr4.4:924991-925010 | MS.gene040178:CDS | 40.0% | |
| AGATATAATCCTGCTGTACC+AGG | - | chr4.4:923296-923315 | MS.gene040178:intron | 40.0% | |
| AGGCCCTTGTAACAACAAAT+TGG | - | chr4.4:921316-921335 | MS.gene040178:intron | 40.0% | |
| AGTGTACCATCAATAACTCC+TGG | - | chr4.4:923614-923633 | MS.gene040178:intron | 40.0% | |
| ATAAGAGGATACTTGAGAGC+AGG | - | chr4.4:925123-925142 | MS.gene040178:CDS | 40.0% | |
| ATTTCTGTACTCTCTCTTCC+AGG | + | chr4.4:921496-921515 | None:intergenic | 40.0% | |
| ATTTGACGACGAGAAGATCT+TGG | - | chr4.4:920620-920639 | MS.gene040178:intron | 40.0% | |
| CAACAAATTGGGAGGTTGTT+TGG | - | chr4.4:921328-921347 | MS.gene040178:intron | 40.0% | |
| CACCATACATGTCAGGTATT+CGG | + | chr4.4:922793-922812 | None:intergenic | 40.0% | |
| CAGCATACATTGGTCGAATT+GGG | + | chr4.4:923129-923148 | None:intergenic | 40.0% | |
| CAGGAAATAATGGTTGCTGT+GGG | + | chr4.4:923412-923431 | None:intergenic | 40.0% | |
| CCATCCTTGATCTTGGAAAA+TGG | + | chr4.4:922364-922383 | None:intergenic | 40.0% | |
| CCCACCTATAAGAAATCAGA+TGG | + | chr4.4:923872-923891 | None:intergenic | 40.0% | |
| CCCATGCAAGTTGTAAACTA+AGG | + | chr4.4:922106-922125 | None:intergenic | 40.0% | |
| CCTTGTAACAACAAATTGGG+AGG | - | chr4.4:921320-921339 | MS.gene040178:intron | 40.0% | |
| CGAATGAGCAAAAGTCTGTT+GGG | + | chr4.4:924904-924923 | None:intergenic | 40.0% | |
| CTTATCTATGGCTGCATCAA+TGG | + | chr4.4:925108-925127 | None:intergenic | 40.0% | |
| GAAAAACTGAACAGATGACC+TGG | - | chr4.4:922605-922624 | MS.gene040178:CDS | 40.0% | |
| GACACAGTTGCATATATCCA+CGG | - | chr4.4:922063-922082 | MS.gene040178:CDS | 40.0% | |
| GATGGTACACTTGAAGACAT+GGG | + | chr4.4:923605-923624 | None:intergenic | 40.0% | |
| GCCTTAGTTTACAACTTGCA+TGG | - | chr4.4:922102-922121 | MS.gene040178:CDS | 40.0% | |
| GGAAAATGGTGAACTTTGAG+TGG | + | chr4.4:923576-923595 | None:intergenic | 40.0% | |
| GGAACAAGTGAATTCAGACT+TGG | - | chr4.4:924948-924967 | MS.gene040178:intron | 40.0% | |
| GGCCCTTGTAACAACAAATT+GGG | - | chr4.4:921317-921336 | MS.gene040178:intron | 40.0% | |
| GTGGATATATGCAACTGTGT+CGG | + | chr4.4:922064-922083 | None:intergenic | 40.0% | |
| GTGTACCATCAATAACTCCT+GGG | - | chr4.4:923615-923634 | MS.gene040178:intron | 40.0% | |
| GTTCCTATTGACGCACATTT+GGG | - | chr4.4:923650-923669 | MS.gene040178:intron | 40.0% | |
| TAATTAGTTATCTGCCGGGT+GGG | - | chr4.4:921814-921833 | MS.gene040178:CDS | 40.0% | |
| TACCGAATACCTGACATGTA+TGG | - | chr4.4:922788-922807 | MS.gene040178:intron | 40.0% | |
| TATATATAGGAGTTAGGGGG+TGG | - | chr4.4:921849-921868 | MS.gene040178:intron | 40.0% | |
| TATCAAGCAATAGGGATTCC+AGG | - | chr4.4:923698-923717 | MS.gene040178:intron | 40.0% | |
| TATGTCCATTCACGTTCTTC+AGG | - | chr4.4:920710-920729 | MS.gene040178:intron | 40.0% | |
| TCACATCTAACCAGATGAGT+AGG | - | chr4.4:924226-924245 | MS.gene040178:CDS | 40.0% | |
| TCATATAAGGTCAACTGAGG+TGG | + | chr4.4:923825-923844 | None:intergenic | 40.0% | |
| TCTTTAGATGGCCCCTAAAT+TGG | + | chr4.4:924657-924676 | None:intergenic | 40.0% | |
| TGATGGTACACTTGAAGACA+TGG | + | chr4.4:923606-923625 | None:intergenic | 40.0% | |
| TGTTCCTATTGACGCACATT+TGG | - | chr4.4:923649-923668 | MS.gene040178:intron | 40.0% | |
| TGTTCTATCAAAGACAGCCA+AGG | - | chr4.4:923021-923040 | MS.gene040178:intron | 40.0% | |
| TTAATTAGTTATCTGCCGGG+TGG | - | chr4.4:921813-921832 | MS.gene040178:CDS | 40.0% | |
| TTGATGCAGCCATAGATAAG+AGG | - | chr4.4:925108-925127 | MS.gene040178:CDS | 40.0% | |
| TTTCCAACAACAGGAAACAG+AGG | + | chr4.4:923542-923561 | None:intergenic | 40.0% | |
| ! | AGAAGGGGCTACTTAGATTT+TGG | - | chr4.4:922029-922048 | MS.gene040178:CDS | 40.0% |
| ! | CAGGAGCATAAGAAATCTCA+AGG | - | chr4.4:922209-922228 | MS.gene040178:CDS | 40.0% |
| ! | CCATTTTCCAAGATCAAGGA+TGG | - | chr4.4:922361-922380 | MS.gene040178:CDS | 40.0% |
| ! | GTAATCTGAGATTGTAGTGC+AGG | + | chr4.4:923473-923492 | None:intergenic | 40.0% |
| ! | TGATGCTTTGTTACTGTAGG+AGG | - | chr4.4:924116-924135 | MS.gene040178:intron | 40.0% |
| ! | TTCAAGAGTATGACTGACCA+TGG | + | chr4.4:924040-924059 | None:intergenic | 40.0% |
| ! | TTGTTTGAGATTACTGGTGG+AGG | + | chr4.4:923955-923974 | None:intergenic | 40.0% |
| !! | CCTCCCAATTTGTTGTTACA+AGG | + | chr4.4:921323-921342 | None:intergenic | 40.0% |
| !! | GATTCGAAAGTTTGGGGTTT+TGG | - | chr4.4:924862-924881 | MS.gene040178:intron | 40.0% |
| !! | GCTTTGTTTGAGATTACTGG+TGG | + | chr4.4:923958-923977 | None:intergenic | 40.0% |
| !! | GGAGCTTTGTTTGAGATTAC+TGG | + | chr4.4:923961-923980 | None:intergenic | 40.0% |
| !!! | ACTTGGTGACGTTTTCTTTG+TGG | + | chr4.4:920737-920756 | None:intergenic | 40.0% |
| AAACCAGTCACAGTGGTTCA+AGG | + | chr4.4:923742-923761 | None:intergenic | 45.0% | |
| AAGTAGACTTCGTTAGTGGC+AGG | + | chr4.4:923994-924013 | None:intergenic | 45.0% | |
| AATACCGGTGGTCCTTCAAT+TGG | - | chr4.4:923928-923947 | MS.gene040178:intron | 45.0% | |
| AGAGCAAGAAGGAGAAGAAG+GGG | - | chr4.4:922014-922033 | MS.gene040178:CDS | 45.0% | |
| AGTGCAGGTGAAGTAGTTGA+TGG | + | chr4.4:923458-923477 | None:intergenic | 45.0% | |
| ATATCCTCCACGATCAACCA+TGG | - | chr4.4:923102-923121 | MS.gene040178:intron | 45.0% | |
| ATGCCCAAATGTGCGTCAAT+AGG | + | chr4.4:923656-923675 | None:intergenic | 45.0% | |
| ATTGAAACAGTTGGAGGCTG+GGG | + | chr4.4:923371-923390 | None:intergenic | 45.0% | |
| ATTGAAGGACCACCGGTATT+TGG | + | chr4.4:923928-923947 | None:intergenic | 45.0% | |
| CAATCTCAGATTACTCCTCC+TGG | - | chr4.4:923479-923498 | MS.gene040178:intron | 45.0% | |
| CAGAGCAAGAAGGAGAAGAA+GGG | - | chr4.4:922013-922032 | MS.gene040178:CDS | 45.0% | |
| CATAAGAAGCTTTCCACTGC+TGG | - | chr4.4:920684-920703 | MS.gene040178:intron | 45.0% | |
| CGAATACCTGACATGTATGG+TGG | - | chr4.4:922791-922810 | MS.gene040178:intron | 45.0% | |
| GAAACAGAGGCTGTGAAACT+GGG | + | chr4.4:923529-923548 | None:intergenic | 45.0% | |
| GAAAGCCCAGGAGTTATTGA+TGG | + | chr4.4:923623-923642 | None:intergenic | 45.0% | |
| GAATTGAAACAGTTGGAGGC+TGG | + | chr4.4:923373-923392 | None:intergenic | 45.0% | |
| GATGTCTTGGCTGCTCATTA+TGG | - | chr4.4:921547-921566 | MS.gene040178:CDS | 45.0% | |
| GCTGCTCATTATGGAGATGA+AGG | - | chr4.4:921556-921575 | MS.gene040178:CDS | 45.0% | |
| GGAACATTTGAAGAAAGCCC+AGG | + | chr4.4:923635-923654 | None:intergenic | 45.0% | |
| GGAGGAATTGAAACAGTTGG+AGG | + | chr4.4:923377-923396 | None:intergenic | 45.0% | |
| GGAGGAGGAATTGAAACAGT+TGG | + | chr4.4:923380-923399 | None:intergenic | 45.0% | |
| GGTTCATGATGAAAGTAGCC+AGG | - | chr4.4:924167-924186 | MS.gene040178:CDS | 45.0% | |
| GTATACAGCGAACATGGTAG+CGG | - | chr4.4:922520-922539 | MS.gene040178:intron | 45.0% | |
| GTGTACAAATGCTGGGATGA+AGG | + | chr4.4:924770-924789 | None:intergenic | 45.0% | |
| TAATGAGCAGCCAAGACATC+TGG | + | chr4.4:921547-921566 | None:intergenic | 45.0% | |
| TATCCTCCACGATCAACCAT+GGG | - | chr4.4:923103-923122 | MS.gene040178:intron | 45.0% | |
| TATGCTTCTGGCCCAAATAC+CGG | - | chr4.4:923913-923932 | MS.gene040178:intron | 45.0% | |
| TCAGAAATAGGAGGGATGCA+GGG | - | chr4.4:921731-921750 | MS.gene040178:CDS | 45.0% | |
| TCAGCTTCTTTCGCAGAGTT+TGG | - | chr4.4:924977-924996 | MS.gene040178:CDS | 45.0% | |
| TCTATCAAAGACAGCCAAGG+TGG | - | chr4.4:923024-923043 | MS.gene040178:intron | 45.0% | |
| TCTCTTCCAGGTTTCGCATT+TGG | + | chr4.4:921484-921503 | None:intergenic | 45.0% | |
| TGCCGGGTGGGTATTATAAA+AGG | - | chr4.4:921826-921845 | MS.gene040178:intron | 45.0% | |
| TGTCGAAAAACCAGTCACAG+TGG | + | chr4.4:923749-923768 | None:intergenic | 45.0% | |
| TTCTTATGCTCCTGATGTGC+AGG | + | chr4.4:922203-922222 | None:intergenic | 45.0% | |
| TTGAAGGACCACCGGTATTT+GGG | + | chr4.4:923927-923946 | None:intergenic | 45.0% | |
| TTGCATATATCCACGGACCA+CGG | - | chr4.4:922070-922089 | MS.gene040178:CDS | 45.0% | |
| TTTCCTTGAACCACTGTGAC+TGG | - | chr4.4:923736-923755 | MS.gene040178:intron | 45.0% | |
| ! | CTACTTAGTTTGGGATGACG+AGG | - | chr4.4:924008-924027 | MS.gene040178:intron | 45.0% |
| ! | TTGGAAGCATAGCTTGACAG+TGG | + | chr4.4:924638-924657 | None:intergenic | 45.0% |
| !! | ATTTTCACGGATAGGTTGGG+TGG | - | chr4.4:921953-921972 | MS.gene040178:intron | 45.0% |
| !! | GAAGTAGTTGATGGCAATGG+AGG | + | chr4.4:923449-923468 | None:intergenic | 45.0% |
| !! | GCTACTTAGATTTTGGCCGT+CGG | - | chr4.4:922036-922055 | MS.gene040178:CDS | 45.0% |
| !! | GGTGAAGTAGTTGATGGCAA+TGG | + | chr4.4:923452-923471 | None:intergenic | 45.0% |
| !! | GGTTGTTTGGTTTGTTGGTC+AGG | - | chr4.4:921341-921360 | MS.gene040178:intron | 45.0% |
| !! | TGGGAGGTTGTTTGGTTTGT+TGG | - | chr4.4:921336-921355 | MS.gene040178:intron | 45.0% |
| !! | TTCCAGTTTGGGTTGAGGTT+CGG | - | chr4.4:922652-922671 | MS.gene040178:CDS | 45.0% |
| !!! | GGTTTTTCCAGTTTGGGTTG+AGG | - | chr4.4:922647-922666 | MS.gene040178:CDS | 45.0% |
| !! | AATCATTTAAAAAAAATAAA+CGG | - | chr4.4:924319-924338 | MS.gene040178:intron | 5.0% |
| AAATAGGAGGGATGCAGGGA+AGG | - | chr4.4:921735-921754 | MS.gene040178:CDS | 50.0% | |
| AACCCCATTTGCAGGTGGAA+TGG | - | chr4.4:923057-923076 | MS.gene040178:intron | 50.0% | |
| AACCGAACCTCAACCCAAAC+TGG | + | chr4.4:922657-922676 | None:intergenic | 50.0% | |
| AAGAAGCTTTCCACTGCTGG+TGG | - | chr4.4:920687-920706 | MS.gene040178:intron | 50.0% | |
| AATCGCCTTCAACCGTGAGA+AGG | - | chr4.4:922177-922196 | MS.gene040178:CDS | 50.0% | |
| AATGGACATACCACCAGCAG+TGG | + | chr4.4:920700-920719 | None:intergenic | 50.0% | |
| ACAACTCCCCAAGCATTAGG+AGG | + | chr4.4:923323-923342 | None:intergenic | 50.0% | |
| ACTGGTGGAGGTCCAATTGA+AGG | + | chr4.4:923943-923962 | None:intergenic | 50.0% | |
| ACTTGAAGACATGGGTGCAG+CGG | + | chr4.4:923597-923616 | None:intergenic | 50.0% | |
| AGGTCCAATTGAAGGACCAC+CGG | + | chr4.4:923935-923954 | None:intergenic | 50.0% | |
| AGTGAATTCAGACTTGGCCC+AGG | - | chr4.4:924954-924973 | MS.gene040178:intron | 50.0% | |
| ATACTTGAGAGCAGGCTAGC+TGG | - | chr4.4:925131-925150 | MS.gene040178:CDS | 50.0% | |
| ATCCCATCAACCCCATTTGC+AGG | - | chr4.4:923049-923068 | MS.gene040178:intron | 50.0% | |
| CAACAGCCACCATACATGTC+AGG | + | chr4.4:922800-922819 | None:intergenic | 50.0% | |
| CAACTCCCCAAGCATTAGGA+GGG | + | chr4.4:923322-923341 | None:intergenic | 50.0% | |
| CACCATCTAGAGAAATCCGC+CGG | - | chr4.4:921899-921918 | MS.gene040178:intron | 50.0% | |
| CACCATTCCACCTGCAAATG+GGG | + | chr4.4:923062-923081 | None:intergenic | 50.0% | |
| CAGCCTCTGTTTCCTGTTGT+TGG | - | chr4.4:923536-923555 | MS.gene040178:intron | 50.0% | |
| CATTCAGGTGGGAGGCAAAA+GGG | + | chr4.4:924593-924612 | None:intergenic | 50.0% | |
| CTGGTCGCATGGCATTCTAA+CGG | - | chr4.4:925150-925169 | MS.gene040178:CDS | 50.0% | |
| GACAAACGGTTGGATCCAGT+CGG | - | chr4.4:921871-921890 | MS.gene040178:intron | 50.0% | |
| GCACCATTCCACCTGCAAAT+GGG | + | chr4.4:923063-923082 | None:intergenic | 50.0% | |
| GCAGAGCAAGAAGGAGAAGA+AGG | - | chr4.4:922012-922031 | MS.gene040178:CDS | 50.0% | |
| GGAAACAGAGGCTGTGAAAC+TGG | + | chr4.4:923530-923549 | None:intergenic | 50.0% | |
| GGAACAACTCCCCAAGCATT+AGG | + | chr4.4:923326-923345 | None:intergenic | 50.0% | |
| GGGATGAAGGATCACGAAGT+TGG | + | chr4.4:924757-924776 | None:intergenic | 50.0% | |
| GGTTGAAGGCGATTAAGCGA+CGG | + | chr4.4:922171-922190 | None:intergenic | 50.0% | |
| GGTTGATCGTGGAGGATATC+CGG | + | chr4.4:923101-923120 | None:intergenic | 50.0% | |
| GTAACTTCCATTCAGGTGGG+AGG | + | chr4.4:924601-924620 | None:intergenic | 50.0% | |
| GTCAGAAATAGGAGGGATGC+AGG | - | chr4.4:921730-921749 | MS.gene040178:CDS | 50.0% | |
| GTGAACTTTGAGTGGCCATG+TGG | + | chr4.4:923568-923587 | None:intergenic | 50.0% | |
| GTGGACCTGAAGAACGTGAA+TGG | + | chr4.4:920718-920737 | None:intergenic | 50.0% | |
| TCTGCGAAAGAAGCTGACCT+GGG | + | chr4.4:924974-924993 | None:intergenic | 50.0% | |
| ! | CACCTGCAAATGGGGTTGAT+GGG | + | chr4.4:923054-923073 | None:intergenic | 50.0% |
| ! | CTAGATGGTGGTTTACCGAC+TGG | + | chr4.4:921889-921908 | None:intergenic | 50.0% |
| ! | GAAGAAGCGCGTTGCTTCAA+AGG | - | chr4.4:920572-920591 | MS.gene040178:CDS | 50.0% |
| !! | GGTTGCTGTGGGTATTGAAC+TGG | + | chr4.4:923401-923420 | None:intergenic | 50.0% |
| !! | TGCTGTGGGTATTGAACTGG+AGG | + | chr4.4:923398-923417 | None:intergenic | 50.0% |
| !! | TGGTAGCGGTCAGTTTGTCA+TGG | - | chr4.4:922534-922553 | MS.gene040178:intron | 50.0% |
| !! | TGTGGGTATTGAACTGGAGG+AGG | + | chr4.4:923395-923414 | None:intergenic | 50.0% |
| ACCAGGCCCTCCTAATGCTT+GGG | - | chr4.4:923313-923332 | MS.gene040178:intron | 55.0% | |
| ACTAAGGCAGAACTTGGCCG+TGG | + | chr4.4:922090-922109 | None:intergenic | 55.0% | |
| AGAGGCTGTGAAACTGGGAC+AGG | + | chr4.4:923524-923543 | None:intergenic | 55.0% | |
| AGCGCGTTGCTTCAAAGGTG+TGG | - | chr4.4:920577-920596 | MS.gene040178:CDS | 55.0% | |
| ATCTAGAGAAATCCGCCGGC+CGG | - | chr4.4:921903-921922 | MS.gene040178:intron | 55.0% | |
| ATTGGGCCCATGGTTGATCG+TGG | + | chr4.4:923112-923131 | None:intergenic | 55.0% | |
| CATTGGTCGAATTGGGCCCA+TGG | + | chr4.4:923122-923141 | None:intergenic | 55.0% | |
| CCACCTGCAAATGGGGTTGA+TGG | + | chr4.4:923055-923074 | None:intergenic | 55.0% | |
| CCATCAACCCCATTTGCAGG+TGG | - | chr4.4:923052-923071 | MS.gene040178:intron | 55.0% | |
| CCATTCAGGTGGGAGGCAAA+AGG | + | chr4.4:924594-924613 | None:intergenic | 55.0% | |
| CTCTGCGAAAGAAGCTGACC+TGG | + | chr4.4:924975-924994 | None:intergenic | 55.0% | |
| CTGATGTGCAGGCCTTCTCA+CGG | + | chr4.4:922192-922211 | None:intergenic | 55.0% | |
| GACATGGGTGCAGCGGAAAA+TGG | + | chr4.4:923590-923609 | None:intergenic | 55.0% | |
| GGAGGATATCCGGTACCCAT+AGG | + | chr4.4:923091-923110 | None:intergenic | 55.0% | |
| GGAGGCCTCACATTCTGAAC+AGG | + | chr4.4:923431-923450 | None:intergenic | 55.0% | |
| GGAGTTAGGGGGTGGACAAA+CGG | - | chr4.4:921857-921876 | MS.gene040178:intron | 55.0% | |
| GGATATCCGGTACCCATAGG+AGG | + | chr4.4:923088-923107 | None:intergenic | 55.0% | |
| GGATGACGAGGCAATGTCCA+TGG | - | chr4.4:924020-924039 | MS.gene040178:intron | 55.0% | |
| GGCACCATTCCACCTGCAAA+TGG | + | chr4.4:923064-923083 | None:intergenic | 55.0% | |
| GGTGTAGATGAAGGCAGTCC+AGG | + | chr4.4:923500-923519 | None:intergenic | 55.0% | |
| GTAGATGAAGGCAGTCCAGG+AGG | + | chr4.4:923497-923516 | None:intergenic | 55.0% | |
| GTTAGTGGCAGGCTGAGTAG+CGG | + | chr4.4:923983-924002 | None:intergenic | 55.0% | |
| TACCAGGCCCTCCTAATGCT+TGG | - | chr4.4:923312-923331 | MS.gene040178:intron | 55.0% | |
| TATCCGGTACCCATAGGAGG+TGG | + | chr4.4:923085-923104 | None:intergenic | 55.0% | |
| TGAGCAGCCAAGACATCTGG+CGG | + | chr4.4:921544-921563 | None:intergenic | 55.0% | |
| TTAGGGGGTGGACAAACGGT+TGG | - | chr4.4:921861-921880 | MS.gene040178:intron | 55.0% | |
| TTAGTGGCAGGCTGAGTAGC+GGG | + | chr4.4:923982-924001 | None:intergenic | 55.0% | |
| ! | AGGGTGCCAAATGCGAAACC+TGG | - | chr4.4:921475-921494 | MS.gene040178:intron | 55.0% |
| ! | CCTTTTGCCTCCCACCTGAA+TGG | - | chr4.4:924591-924610 | MS.gene040178:intron | 55.0% |
| ! | CGGCGGATTTCTCTAGATGG+TGG | + | chr4.4:921901-921920 | None:intergenic | 55.0% |
| ! | GGAGATGGGCCGAGATTTTC+CGG | + | chr4.4:921925-921944 | None:intergenic | 55.0% |
| ! | GGGACAGGAGGTGTAGATGA+AGG | + | chr4.4:923509-923528 | None:intergenic | 55.0% |
| ! | GGGTTCTAACGAAAGCGGGT+GGG | - | chr4.4:921977-921996 | MS.gene040178:intron | 55.0% |
| ! | TTCACGGATAGGTTGGGTGG+CGG | - | chr4.4:921956-921975 | MS.gene040178:intron | 55.0% |
| !! | CGAAAGCGGGTGGGTTGAAA+TGG | - | chr4.4:921986-922005 | MS.gene040178:intron | 55.0% |
| !! | GGAATGGTGCCACCTCCTAT+GGG | - | chr4.4:923073-923092 | MS.gene040178:intron | 55.0% |
| !! | GGTTGATGGGATGTCCACCT+TGG | + | chr4.4:923041-923060 | None:intergenic | 55.0% |
| !! | GTGGCGGGTTCTAACGAAAG+CGG | - | chr4.4:921972-921991 | MS.gene040178:intron | 55.0% |
| !! | TGGAATGGTGCCACCTCCTA+TGG | - | chr4.4:923072-923091 | MS.gene040178:intron | 55.0% |
| !! | TGGCGGGTTCTAACGAAAGC+GGG | - | chr4.4:921973-921992 | MS.gene040178:intron | 55.0% |
| AACCATGGCTGAGGTCGAGG+TGG | + | chr4.4:923347-923366 | None:intergenic | 60.0% | |
| ATCCGCCGGCCGGAAAATCT+CGG | - | chr4.4:921913-921932 | MS.gene040178:intron | 60.0% | |
| CCAGGCCCTCCTAATGCTTG+GGG | - | chr4.4:923314-923333 | MS.gene040178:intron | 60.0% | |
| CGTGAGAAGGCCTGCACATC+AGG | - | chr4.4:922190-922209 | MS.gene040178:CDS | 60.0% | |
| GCAGGCCTTCTCACGGTTGA+AGG | + | chr4.4:922185-922204 | None:intergenic | 60.0% | |
| GCTTCTGGCCCAAATACCGG+TGG | - | chr4.4:923916-923935 | MS.gene040178:intron | 60.0% | |
| GGAAACCATGGCTGAGGTCG+AGG | + | chr4.4:923350-923369 | None:intergenic | 60.0% | |
| GGCTGTGAAACTGGGACAGG+AGG | + | chr4.4:923521-923540 | None:intergenic | 60.0% | |
| GGGGATTCCGCCAGATGTCT+TGG | - | chr4.4:921534-921553 | MS.gene040178:intron | 60.0% | |
| GTGCCACCTCCTATGGGTAC+CGG | - | chr4.4:923079-923098 | MS.gene040178:intron | 60.0% | |
| GTTGGAGGCTGGGGAAACCA+TGG | + | chr4.4:923362-923381 | None:intergenic | 60.0% | |
| TAGGAGGGATGCAGGGAAGG+AGG | - | chr4.4:921738-921757 | MS.gene040178:CDS | 60.0% | |
| TTAGGAGGGCCTGGTACAGC+AGG | + | chr4.4:923308-923327 | None:intergenic | 60.0% | |
| TTCCACCTCGACCTCAGCCA+TGG | - | chr4.4:923342-923361 | MS.gene040178:intron | 60.0% | |
| ! | ATGGGCCGAGATTTTCCGGC+CGG | + | chr4.4:921921-921940 | None:intergenic | 60.0% |
| ! | CGGGTTCTAACGAAAGCGGG+TGG | - | chr4.4:921976-921995 | MS.gene040178:intron | 60.0% |
| ! | GGCCGGCGGATTTCTCTAGA+TGG | + | chr4.4:921904-921923 | None:intergenic | 60.0% |
| ! | TCACGGATAGGTTGGGTGGC+GGG | - | chr4.4:921957-921976 | MS.gene040178:intron | 60.0% |
| ! | TGCAACTGTGTCGGCACCGA+CGG | + | chr4.4:922055-922074 | None:intergenic | 60.0% |
| CAGAACTTGGCCGTGGTCCG+TGG | + | chr4.4:922083-922102 | None:intergenic | 65.0% | |
| CCCCAAGCATTAGGAGGGCC+TGG | + | chr4.4:923317-923336 | None:intergenic | 65.0% | |
| GGCTGGGGAAACCATGGCTG+AGG | + | chr4.4:923356-923375 | None:intergenic | 65.0% | |
| GGGCCCATGGTTGATCGTGG+AGG | + | chr4.4:923109-923128 | None:intergenic | 65.0% | |
| ! | GAGCAGGCTAGCTGGTCGCA+TGG | - | chr4.4:925139-925158 | MS.gene040178:CDS | 65.0% |
| ! | GGCCGAGATTTTCCGGCCGG+CGG | + | chr4.4:921918-921937 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 920561 | 925169 | 920561 | ID=MS.gene040178 |
| chr4.4 | mRNA | 920561 | 925169 | 920561 | ID=MS.gene040178.t1;Parent=MS.gene040178 |
| chr4.4 | exon | 924976 | 925169 | 924976 | ID=MS.gene040178.t1.exon1;Parent=MS.gene040178.t1 |
| chr4.4 | CDS | 924976 | 925169 | 924976 | ID=cds.MS.gene040178.t1;Parent=MS.gene040178.t1 |
| chr4.4 | exon | 924153 | 924253 | 924153 | ID=MS.gene040178.t1.exon2;Parent=MS.gene040178.t1 |
| chr4.4 | CDS | 924153 | 924253 | 924153 | ID=cds.MS.gene040178.t1;Parent=MS.gene040178.t1 |
| chr4.4 | exon | 922590 | 922716 | 922590 | ID=MS.gene040178.t1.exon3;Parent=MS.gene040178.t1 |
| chr4.4 | CDS | 922590 | 922716 | 922590 | ID=cds.MS.gene040178.t1;Parent=MS.gene040178.t1 |
| chr4.4 | exon | 922011 | 922432 | 922011 | ID=MS.gene040178.t1.exon4;Parent=MS.gene040178.t1 |
| chr4.4 | CDS | 922011 | 922432 | 922011 | ID=cds.MS.gene040178.t1;Parent=MS.gene040178.t1 |
| chr4.4 | exon | 921689 | 921843 | 921689 | ID=MS.gene040178.t1.exon5;Parent=MS.gene040178.t1 |
| chr4.4 | CDS | 921689 | 921843 | 921689 | ID=cds.MS.gene040178.t1;Parent=MS.gene040178.t1 |
| chr4.4 | exon | 921542 | 921595 | 921542 | ID=MS.gene040178.t1.exon6;Parent=MS.gene040178.t1 |
| chr4.4 | CDS | 921542 | 921595 | 921542 | ID=cds.MS.gene040178.t1;Parent=MS.gene040178.t1 |
| chr4.4 | exon | 920561 | 920632 | 920561 | ID=MS.gene040178.t1.exon7;Parent=MS.gene040178.t1 |
| chr4.4 | CDS | 920561 | 920632 | 920561 | ID=cds.MS.gene040178.t1;Parent=MS.gene040178.t1 |
| Gene Sequence |
| Protein sequence |
