AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene040901

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene040901.t1 MTR_1g033390 89.100 211 23 0 1 211 1 211 2.23e-135 378
MS.gene040901.t1 MTR_1g033360 43.216 199 112 1 10 208 16 213 6.68e-56 177
MS.gene040901.t1 MTR_1g100643 39.048 210 125 1 1 207 5 214 6.52e-55 175
MS.gene040901.t1 MTR_6g017105 37.436 195 118 1 14 204 19 213 3.25e-42 142
MS.gene040901.t1 MTR_1g100643 39.130 161 95 1 50 207 1 161 1.40e-39 134
MS.gene040901.t1 MTR_5g053250 35.762 151 92 2 45 191 56 205 8.85e-28 105
MS.gene040901.t1 MTR_5g053250 35.616 146 89 2 50 191 1 145 9.76e-26 99.0
MS.gene040901.t1 MTR_5g053250 29.032 217 118 5 10 191 17 232 5.67e-22 90.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene040901.t1 AT1G14730 50.000 202 100 1 9 210 20 220 2.66e-73 221
MS.gene040901.t1 AT4G25570 36.449 214 133 1 1 211 5 218 4.47e-53 171
MS.gene040901.t1 AT4G25570 36.449 214 133 1 1 211 46 259 3.56e-52 169
MS.gene040901.t1 AT5G38630 37.811 201 118 2 15 208 17 217 3.50e-45 150
MS.gene040901.t1 AT1G26100 33.523 176 105 4 10 183 15 180 9.58e-25 97.4

Find 46 sgRNAs with CRISPR-Local

Find 199 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCTGCTTGTTTGGTTTGC+AGG 0.165329 1.2:-17809456 MS.gene040901:intron
TTAAAATTTAACAGCTATTA+TGG 0.166099 1.2:-17809648 MS.gene040901:intron
CCGCATCTTTACAGTCTTCA+TGG 0.276421 1.2:-17809497 MS.gene040901:CDS
TTGGTTACATTCTTGGTTCC+TGG 0.284163 1.2:-17809052 MS.gene040901:CDS
GCAATATGTGCTGCATTAAC+AGG 0.288180 1.2:-17808959 MS.gene040901:CDS
GGTCTTTCAATTCTATTGTT+TGG 0.306287 1.2:-17808866 MS.gene040901:CDS
CTTCACCAGCAAGGAAAATA+AGG 0.306596 1.2:+17812254 None:intergenic
CCTTCATACTCATACTTGTT+TGG 0.309677 1.2:-17812467 MS.gene040901:CDS
AGGCTCAGGAACATCATTAA+AGG 0.317240 1.2:+17812274 None:intergenic
ATTGTCACCTTCTGCTTGTT+TGG 0.329434 1.2:-17809464 MS.gene040901:CDS
CTTGTTGCTTCTTGTGCTCC+AGG 0.336655 1.2:+17809034 None:intergenic
TCAGGTTTGGCTCATTTGTT+TGG 0.341278 1.2:-17812498 MS.gene040901:CDS
GTCTTTGTGCGGGTACCGTT+TGG 0.366595 1.2:+17809621 None:intergenic
ACATCAGACAGAAACTAATT+TGG 0.367590 1.2:-17808900 MS.gene040901:CDS
ACTAATTTGGTCACCTTCAC+TGG 0.396568 1.2:-17808887 MS.gene040901:CDS
TATCAGGAAGCTTGTTCATA+TGG 0.419940 1.2:-17809597 MS.gene040901:CDS
TACAGTCTTCATGGATGGAT+TGG 0.420550 1.2:-17809488 MS.gene040901:CDS
TGCCATTGTAATGTCAGGTT+TGG 0.435462 1.2:-17812511 MS.gene040901:CDS
TGCTGCATTAACAGGGTTGA+TGG 0.454100 1.2:-17808951 MS.gene040901:CDS
TACCCGCACAAAGACATATC+AGG 0.463004 1.2:-17809613 MS.gene040901:CDS
GGCTCAGGAACATCATTAAA+GGG 0.463466 1.2:+17812275 None:intergenic
ATTGACTATGCTTCCGTGGA+TGG 0.467721 1.2:-17812423 MS.gene040901:CDS
GCGGAATATTTAGCATATCA+TGG 0.474457 1.2:+17809516 None:intergenic
ATGAGTGCCATTGTAATGTC+AGG 0.479739 1.2:-17812516 MS.gene040901:CDS
ATCTTTACAGTCTTCATGGA+TGG 0.510201 1.2:-17809493 MS.gene040901:CDS
CAAGAGCTAGAGTGCTTCCA+TGG 0.524373 1.2:-17809015 MS.gene040901:CDS
AGCTATTATGGCATTCCAAA+CGG 0.526255 1.2:-17809636 MS.gene040901:CDS
CTTCCTGATATGTCTTTGTG+CGG 0.537316 1.2:+17809610 None:intergenic
CAGCAAGGAAAATAAGGCTC+AGG 0.541270 1.2:+17812260 None:intergenic
GGCTGGTTTCTTGAAACTGA+GGG 0.543574 1.2:-17808924 MS.gene040901:CDS
CCAAACAAGTATGAGTATGA+AGG 0.550105 1.2:+17812467 None:intergenic
ACAGGGTTGATGGAGAAGGC+TGG 0.560279 1.2:-17808941 MS.gene040901:CDS
GTGCTTCCATGGCACAAAGT+TGG 0.562421 1.2:-17809004 MS.gene040901:CDS
TTACCACCAACTTTGTGCCA+TGG 0.569979 1.2:+17808998 None:intergenic
TTCCTGATATGTCTTTGTGC+GGG 0.571362 1.2:+17809611 None:intergenic
CTTCCATGGCACAAAGTTGG+TGG 0.575822 1.2:-17809001 MS.gene040901:CDS
TAGAATTGAAAGACCAGTGA+AGG 0.581454 1.2:+17808874 None:intergenic
TGCATATACCTTCACCAGCA+AGG 0.583434 1.2:+17812245 None:intergenic
ATTAACAGGGTTGATGGAGA+AGG 0.597536 1.2:-17808945 MS.gene040901:CDS
AGGCTGGTTTCTTGAAACTG+AGG 0.602429 1.2:-17808925 MS.gene040901:CDS
AGGGATTGACTATGCTTCCG+TGG 0.627678 1.2:-17812427 MS.gene040901:CDS
CTGCAAACCAAACAAGCAGA+AGG 0.637468 1.2:+17809457 None:intergenic
CCATGAAGACTGTAAAGATG+CGG 0.657005 1.2:+17809497 None:intergenic
AGCCAAACCTGACATTACAA+TGG 0.660651 1.2:+17812509 None:intergenic
CAATATGTGCTGCATTAACA+GGG 0.682347 1.2:-17808958 MS.gene040901:CDS
GAAGACGCGAAATCCATCCA+CGG 0.694348 1.2:+17812410 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATATATATATATATAT+TGG + chr1.2:17811672-17811653 None:intergenic 0.0%
!! GAAAAATAATTGAAAAAATA+CGG + chr1.2:17811202-17811221 None:intergenic 10.0%
!! TAGAAAAACAATTTAATTAA+GGG + chr1.2:17809362-17809381 None:intergenic 10.0%
!! TCTAAAAAAAATTAAAATTC+TGG - chr1.2:17810611-17810630 MS.gene040901:intron 10.0%
!! TTAATGAAAAATAAAAATTC+TGG - chr1.2:17810655-17810674 MS.gene040901:intron 10.0%
!!! TCATATATAAATGTTTTTTT+AGG - chr1.2:17811930-17811949 MS.gene040901:intron 10.0%
!!! TTAAAAAAAATTCGAAATTT+TGG - chr1.2:17810685-17810704 MS.gene040901:intron 10.0%
!! AAAAAAATTGAAAACAATTC+TGG + chr1.2:17811299-17811318 None:intergenic 15.0%
!! ACGGAAAAATTTAAAAATTT+AGG + chr1.2:17811183-17811202 None:intergenic 15.0%
!! ATATATCTCAATTTATTCAT+TGG - chr1.2:17811667-17811686 MS.gene040901:intron 15.0%
!! ATTGAAAAAATTGAAAATTC+TGG + chr1.2:17811024-17811043 None:intergenic 15.0%
!! CTAGAAAAACAATTTAATTA+AGG + chr1.2:17809363-17809382 None:intergenic 15.0%
!! TAAAATATTAGAGATGTTAT+GGG + chr1.2:17809899-17809918 None:intergenic 15.0%
!! TTAAAAATTTCGAAAATATC+TGG + chr1.2:17811073-17811092 None:intergenic 15.0%
!! TTAAAATTTAACAGCTATTA+TGG - chr1.2:17811700-17811719 MS.gene040901:intron 15.0%
!!! AAAAAATTCTGAAAAAAATC+TGG - chr1.2:17810518-17810537 MS.gene040901:intron 15.0%
!!! AAAAACAATCAAATAGTTTT+AGG - chr1.2:17812129-17812148 MS.gene040901:intron 15.0%
!!! AAAAGAGTTATTTTTTTTAG+GGG - chr1.2:17811578-17811597 MS.gene040901:intron 15.0%
!!! AAAAGAGTTATTTTTTTTAG+GGG + chr1.2:17811597-17811578 None:intergenic 15.0%
!!! AATACTAATGAAAATTTTTC+CGG + chr1.2:17810867-17810886 None:intergenic 15.0%
!!! AATTTTCGAAAAAAAAATTC+TGG - chr1.2:17810569-17810588 MS.gene040901:intron 15.0%
!!! ATTTTCATTAGTATTTTTTC+CGG - chr1.2:17810845-17810864 MS.gene040901:intron 15.0%
!!! ATTTTTGTGTATTTATAAAC+CGG + chr1.2:17810945-17810964 None:intergenic 15.0%
!!! CGAATTTTAGAATTTAAATA+GGG + chr1.2:17812005-17812024 None:intergenic 15.0%
!!! GAAAAGAGTTATTTTTTTTA+GGG - chr1.2:17811577-17811596 MS.gene040901:intron 15.0%
!!! GAAAAGAGTTATTTTTTTTA+GGG + chr1.2:17811596-17811577 None:intergenic 15.0%
!!! TAAAAAAAATAACTCTTTTC+AGG - chr1.2:17810141-17810160 MS.gene040901:intron 15.0%
!!! TAAAAAAAATAACTCTTTTC+AGG + chr1.2:17810160-17810141 None:intergenic 15.0%
!!! TCGAATTTTAGAATTTAAAT+AGG + chr1.2:17812006-17812025 None:intergenic 15.0%
!!! TGAAAAGAGTTATTTTTTTT+AGG - chr1.2:17811576-17811595 MS.gene040901:intron 15.0%
!!! TGAAAAGAGTTATTTTTTTT+AGG + chr1.2:17811595-17811576 None:intergenic 15.0%
!!! TTTTTTAGGTAAAAATAGTT+TGG - chr1.2:17811944-17811963 MS.gene040901:intron 15.0%
!! AATAAAAAAATTTACACACG+TGG + chr1.2:17810241-17810260 None:intergenic 20.0%
!! ACAAAAAATTATGTGTATTC+CGG - chr1.2:17810923-17810942 MS.gene040901:intron 20.0%
!! ATATCTGGAAAATTTGAAAA+CGG + chr1.2:17811058-17811077 None:intergenic 20.0%
!! CTAAAATATTAGAGATGTTA+TGG + chr1.2:17809900-17809919 None:intergenic 20.0%
!! TAAATTTCATTTGCATATAG+AGG + chr1.2:17809504-17809523 None:intergenic 20.0%
!! TCTTGAAAAGCAAATATATA+TGG - chr1.2:17810065-17810084 MS.gene040901:intron 20.0%
!! TTTAACATACATGATCATAT+GGG + chr1.2:17809691-17809710 None:intergenic 20.0%
!!! AAAGAGTTATTTTTTTTAGG+GGG - chr1.2:17811579-17811598 MS.gene040901:intron 20.0%
!!! AAAGAGTTATTTTTTTTAGG+GGG + chr1.2:17811598-17811579 None:intergenic 20.0%
!!! AAATAGTTTTAGGATATGTT+CGG - chr1.2:17812139-17812158 MS.gene040901:intron 20.0%
!!! AATTTTCATTATGTGTATTC+CGG - chr1.2:17810897-17810916 MS.gene040901:intron 20.0%
!!! ACACATAATTTTTTGTAAAC+CGG + chr1.2:17810919-17810938 None:intergenic 20.0%
!!! AGAAAGTGTTAAAAAAGAAT+AGG - chr1.2:17809710-17809729 MS.gene040901:intron 20.0%
!!! ATGATTTTGACCATAAAAAA+AGG - chr1.2:17809871-17809890 MS.gene040901:intron 20.0%
!!! ATTGAAAATTCTGGAAAATA+CGG + chr1.2:17811015-17811034 None:intergenic 20.0%
!!! ATTTCAATGTGTTTTTTTTG+AGG - chr1.2:17812029-17812048 MS.gene040901:intron 20.0%
!!! ATTTTCATTCGTATTTTTTC+TGG + chr1.2:17810970-17810989 None:intergenic 20.0%
!!! GATATACTGACTTTAATAAT+AGG - chr1.2:17812232-17812251 MS.gene040901:intron 20.0%
!!! GTTTTTTTTGAGGTTTTATA+GGG - chr1.2:17812039-17812058 MS.gene040901:intron 20.0%
!!! TGGTAAAGTACTATTTTTTA+TGG - chr1.2:17812367-17812386 MS.gene040901:intron 20.0%
!!! TGTTTTTTTTGAGGTTTTAT+AGG - chr1.2:17812038-17812057 MS.gene040901:intron 20.0%
!!! TTGTTTTCTAGAAAGAAAAA+GGG + chr1.2:17809312-17809331 None:intergenic 20.0%
!!! TTTTCATTAGTATTTTTTCC+GGG - chr1.2:17810846-17810865 MS.gene040901:intron 20.0%
!!! TTTTCATTCGTATTTTTTCT+GGG + chr1.2:17810969-17810988 None:intergenic 20.0%
! CTTTAACATACATGATCATA+TGG + chr1.2:17809692-17809711 None:intergenic 25.0%
! TACACATAATGAAAATTTCC+CGG + chr1.2:17810894-17810913 None:intergenic 25.0%
! TATGTAACATTTGACAACAA+AGG + chr1.2:17808996-17809015 None:intergenic 25.0%
!! AAAGTTGATCATCACAATTT+CGG - chr1.2:17809944-17809963 MS.gene040901:intron 25.0%
!! ATATTGTTGATTAATTGCAG+TGG - chr1.2:17812264-17812283 MS.gene040901:CDS 25.0%
!! CAAAATCATCTCCTTTTAAT+GGG + chr1.2:17809860-17809879 None:intergenic 25.0%
!! TATTGTTGATTAATTGCAGT+GGG - chr1.2:17812265-17812284 MS.gene040901:CDS 25.0%
!! TCAAAATCATCTCCTTTTAA+TGG + chr1.2:17809861-17809880 None:intergenic 25.0%
!! TCTCAATTTATTCATTGGTT+TGG - chr1.2:17811672-17811691 MS.gene040901:intron 25.0%
!!! CTCTTTGAAACATACTTTAA+TGG + chr1.2:17809197-17809216 None:intergenic 25.0%
!!! GTTGTTTTCTAGAAAGAAAA+AGG + chr1.2:17809313-17809332 None:intergenic 25.0%
!!! TATTGGCTTAATTACACTTT+TGG + chr1.2:17811636-17811655 None:intergenic 25.0%
AAACATACACTTAGTTGTCA+TGG - chr1.2:17810037-17810056 MS.gene040901:intron 30.0%
AACTAAATGTGCCCATTAAA+AGG - chr1.2:17809846-17809865 MS.gene040901:intron 30.0%
ACATCAGACAGAAACTAATT+TGG - chr1.2:17812448-17812467 MS.gene040901:CDS 30.0%
ATTCTAAATCCAAACTGCAT+AGG - chr1.2:17812078-17812097 MS.gene040901:intron 30.0%
ATTCTCATTTAAACATGCAC+CGG + chr1.2:17809567-17809586 None:intergenic 30.0%
CTTTGATGTTTATTGTTTGC+AGG - chr1.2:17809046-17809065 MS.gene040901:CDS 30.0%
GGTCTTTCAATTCTATTGTT+TGG - chr1.2:17812482-17812501 MS.gene040901:CDS 30.0%
GGTTGTTTACAGAAAATTGA+AGG - chr1.2:17812160-17812179 MS.gene040901:intron 30.0%
TTAGTATATATGTCGAGCTT+AGG - chr1.2:17810792-17810811 MS.gene040901:intron 30.0%
TTCTAAATCCAAACTGCATA+GGG - chr1.2:17812079-17812098 MS.gene040901:intron 30.0%
TTTGTCCCATTTAAACTAAC+CGG - chr1.2:17809545-17809564 MS.gene040901:CDS 30.0%
! ATCACAACTTTTGGATACTT+AGG - chr1.2:17811607-17811626 MS.gene040901:intron 30.0%
! GAAGTGTCTATTAAATTCAG+AGG + chr1.2:17809742-17809761 None:intergenic 30.0%
! TCACAACTTTTGGATACTTA+GGG - chr1.2:17811608-17811627 MS.gene040901:intron 30.0%
! TGAATCCATCTCTTTTCATA+TGG + chr1.2:17809764-17809783 None:intergenic 30.0%
! TTTCTAGAAAGAAAAAGGGA+GGG + chr1.2:17809308-17809327 None:intergenic 30.0%
!! ACAGAAAATTGAAGGTGTTT+AGG - chr1.2:17812168-17812187 MS.gene040901:intron 30.0%
!! CACTTGATTGCTATTGTTTT+TGG - chr1.2:17811779-17811798 MS.gene040901:intron 30.0%
!! TTCACTTTTGGTTGCAATTT+TGG - chr1.2:17810173-17810192 MS.gene040901:intron 30.0%
!! TTCACTTTTGGTTGCAATTT+TGG + chr1.2:17810192-17810173 None:intergenic 30.0%
!! TTTTAATGGGCACATTTAGT+TGG + chr1.2:17809847-17809866 None:intergenic 30.0%
!! TTTTCTAGAAAGAAAAAGGG+AGG + chr1.2:17809309-17809328 None:intergenic 30.0%
!!! GTTATGGGTACCTTTTTTTA+TGG + chr1.2:17809884-17809903 None:intergenic 30.0%
AGCTATTATGGCATTCCAAA+CGG - chr1.2:17811712-17811731 MS.gene040901:intron 35.0%
ATCTTTACAGTCTTCATGGA+TGG - chr1.2:17811855-17811874 MS.gene040901:intron 35.0%
CAACCAAAAGTGAACTTAAG+GGG - chr1.2:17811551-17811570 MS.gene040901:intron 35.0%
CAACCAAAAGTGAACTTAAG+GGG + chr1.2:17811570-17811551 None:intergenic 35.0%
CAATATGTGCTGCATTAACA+GGG - chr1.2:17812390-17812409 MS.gene040901:intron 35.0%
CACTTCCATATGAAAAGAGA+TGG - chr1.2:17809756-17809775 MS.gene040901:intron 35.0%
CCAAACAAGTATGAGTATGA+AGG + chr1.2:17808884-17808903 None:intergenic 35.0%
CCTTCATACTCATACTTGTT+TGG - chr1.2:17808881-17808900 MS.gene040901:CDS 35.0%
GCAACCAAAAGTGAACTTAA+GGG - chr1.2:17811550-17811569 MS.gene040901:intron 35.0%
GCAACCAAAAGTGAACTTAA+GGG + chr1.2:17811569-17811550 None:intergenic 35.0%
GCGGAATATTTAGCATATCA+TGG + chr1.2:17811835-17811854 None:intergenic 35.0%
GTATCCAAAAGTTGTGATTC+AGG + chr1.2:17811605-17811624 None:intergenic 35.0%
TAGAATTGAAAGACCAGTGA+AGG + chr1.2:17812477-17812496 None:intergenic 35.0%
TAGATTAACGATGACTTCCA+AGG + chr1.2:17810018-17810037 None:intergenic 35.0%
TGCAACCAAAAGTGAACTTA+AGG - chr1.2:17811549-17811568 MS.gene040901:intron 35.0%
TGCAACCAAAAGTGAACTTA+AGG + chr1.2:17811568-17811549 None:intergenic 35.0%
! ACAACTTTTGGATACTTAGG+GGG - chr1.2:17811610-17811629 MS.gene040901:intron 35.0%
! ATCGCAACTTTTGGATACTT+AGG + chr1.2:17810111-17810130 None:intergenic 35.0%
! CACAACTTTTGGATACTTAG+GGG - chr1.2:17811609-17811628 MS.gene040901:intron 35.0%
! TATAGGGTTTTCATGCAGTT+CGG - chr1.2:17812055-17812074 MS.gene040901:intron 35.0%
! TATCAGGAAGCTTGTTCATA+TGG - chr1.2:17811751-17811770 MS.gene040901:intron 35.0%
! TCGCAACTTTTGGATACTTA+GGG + chr1.2:17810110-17810129 None:intergenic 35.0%
!! ATGCACCGGTTAGTTTAAAT+GGG + chr1.2:17809553-17809572 None:intergenic 35.0%
!! GATTAATTGCAGTGGGTTTT+TGG - chr1.2:17812272-17812291 MS.gene040901:CDS 35.0%
!!! GCTATTGTTTTTGGCATAGT+TGG - chr1.2:17811788-17811807 MS.gene040901:intron 35.0%
!!! TTTTGGCTTGGTTACATTCT+TGG - chr1.2:17812289-17812308 MS.gene040901:intron 35.0%
ACAATGTCACCCTATTTCCT+TGG - chr1.2:17809998-17810017 MS.gene040901:intron 40.0%
ACGATGACTTCCAAGGAAAT+AGG + chr1.2:17810011-17810030 None:intergenic 40.0%
ACTAATTTGGTCACCTTCAC+TGG - chr1.2:17812461-17812480 MS.gene040901:CDS 40.0%
AGCCAAACCTGACATTACAA+TGG + chr1.2:17808842-17808861 None:intergenic 40.0%
AGGCTCAGGAACATCATTAA+AGG + chr1.2:17809077-17809096 None:intergenic 40.0%
ATTGTCACCTTCTGCTTGTT+TGG - chr1.2:17811884-17811903 MS.gene040901:intron 40.0%
CCATGAAGACTGTAAAGATG+CGG + chr1.2:17811854-17811873 None:intergenic 40.0%
CGATGACTTCCAAGGAAATA+GGG + chr1.2:17810010-17810029 None:intergenic 40.0%
CTTCACCAGCAAGGAAAATA+AGG + chr1.2:17809097-17809116 None:intergenic 40.0%
CTTCCTGATATGTCTTTGTG+CGG + chr1.2:17811741-17811760 None:intergenic 40.0%
GCAATATGTGCTGCATTAAC+AGG - chr1.2:17812389-17812408 MS.gene040901:intron 40.0%
GGCTCAGGAACATCATTAAA+GGG + chr1.2:17809076-17809095 None:intergenic 40.0%
GTATCCAAAAGTTGCGATTC+AGG - chr1.2:17810113-17810132 MS.gene040901:intron 40.0%
TACAGTCTTCATGGATGGAT+TGG - chr1.2:17811860-17811879 MS.gene040901:intron 40.0%
TAGTAAGATATGACTCCGAG+AGG + chr1.2:17809140-17809159 None:intergenic 40.0%
TGCCATTGTAATGTCAGGTT+TGG - chr1.2:17808837-17808856 MS.gene040901:CDS 40.0%
TTCCTGATATGTCTTTGTGC+GGG + chr1.2:17811740-17811759 None:intergenic 40.0%
TTGGTTACATTCTTGGTTCC+TGG - chr1.2:17812296-17812315 MS.gene040901:intron 40.0%
! ATGAGTGCCATTGTAATGTC+AGG - chr1.2:17808832-17808851 MS.gene040901:CDS 40.0%
! CGCAACTTTTGGATACTTAG+GGG + chr1.2:17810109-17810128 None:intergenic 40.0%
! CTGTTGACTGGGTCAAAATT+GGG + chr1.2:17810207-17810226 None:intergenic 40.0%
! GCAACTTTTGGATACTTAGG+GGG + chr1.2:17810108-17810127 None:intergenic 40.0%
! GGTTGTTACATTTTCGCGAA+GGG - chr1.2:17808902-17808921 MS.gene040901:CDS 40.0%
! TCAGGTTTGGCTCATTTGTT+TGG - chr1.2:17808850-17808869 MS.gene040901:CDS 40.0%
! TCTGTTGACTGGGTCAAAAT+TGG + chr1.2:17810208-17810227 None:intergenic 40.0%
! TGGTTGTTACATTTTCGCGA+AGG - chr1.2:17808901-17808920 MS.gene040901:CDS 40.0%
!! ATTAACAGGGTTGATGGAGA+AGG - chr1.2:17812403-17812422 MS.gene040901:intron 40.0%
!! CATGCACCGGTTAGTTTAAA+TGG + chr1.2:17809554-17809573 None:intergenic 40.0%
!! CTTATTTTCCTTGCTGGTGA+AGG - chr1.2:17809095-17809114 MS.gene040901:intron 40.0%
ACTGGGTCAAAATTGGGCTA+GGG - chr1.2:17811517-17811536 MS.gene040901:intron 45.0%
ACTGGGTCAAAATTGGGCTA+GGG + chr1.2:17811536-17811517 None:intergenic 45.0%
ATTGACTATGCTTCCGTGGA+TGG - chr1.2:17808925-17808944 MS.gene040901:CDS 45.0%
CAGCAAGGAAAATAAGGCTC+AGG + chr1.2:17809091-17809110 None:intergenic 45.0%
CCGCATCTTTACAGTCTTCA+TGG - chr1.2:17811851-17811870 MS.gene040901:intron 45.0%
CTGCAAACCAAACAAGCAGA+AGG + chr1.2:17811894-17811913 None:intergenic 45.0%
TAAGATATGACTCCGAGAGG+AGG + chr1.2:17809137-17809156 None:intergenic 45.0%
TACCCGCACAAAGACATATC+AGG - chr1.2:17811735-17811754 MS.gene040901:intron 45.0%
TGCATATACCTTCACCAGCA+AGG + chr1.2:17809106-17809125 None:intergenic 45.0%
TGCTGCATTAACAGGGTTGA+TGG - chr1.2:17812397-17812416 MS.gene040901:intron 45.0%
TTACCACCAACTTTGTGCCA+TGG + chr1.2:17812353-17812372 None:intergenic 45.0%
! AGGCCCCTTAAGTTCACTTT+TGG - chr1.2:17810161-17810180 MS.gene040901:intron 45.0%
! AGGCCCCTTAAGTTCACTTT+TGG + chr1.2:17810180-17810161 None:intergenic 45.0%
!! AGCGTTGACTGGGTCAAAAT+TGG - chr1.2:17811510-17811529 MS.gene040901:intron 45.0%
!! AGGCTGGTTTCTTGAAACTG+AGG - chr1.2:17812423-17812442 MS.gene040901:CDS 45.0%
!! CTTCTGCTTGTTTGGTTTGC+AGG - chr1.2:17811892-17811911 MS.gene040901:intron 45.0%
!! GCGTTGACTGGGTCAAAATT+GGG - chr1.2:17811511-17811530 MS.gene040901:intron 45.0%
!! GGCTGGTTTCTTGAAACTGA+GGG - chr1.2:17812424-17812443 MS.gene040901:CDS 45.0%
!!! ATTGCAGTGGGTTTTTGGCT+TGG - chr1.2:17812277-17812296 MS.gene040901:CDS 45.0%
!!! CTGAGCCTTATTTTCCTTGC+TGG - chr1.2:17809089-17809108 MS.gene040901:intron 45.0%
!! AAAAAAATATTAAAAAATTC+TGG + chr1.2:17811492-17811473 None:intergenic 5.0%
!! AAAAAAATATTATAAAATTC+TGG - chr1.2:17810400-17810419 MS.gene040901:intron 5.0%
!! GAAAAATTAATAAAAAAATT+GGG + chr1.2:17811310-17811329 None:intergenic 5.0%
!! TAAAAAATAAATAAAAATTC+TGG + chr1.2:17811440-17811459 None:intergenic 5.0%
!! TGAAAAATTAATAAAAAAAT+TGG + chr1.2:17811311-17811330 None:intergenic 5.0%
!! TTTAAAAAATAAAAAAATTC+TGG - chr1.2:17810449-17810468 MS.gene040901:intron 5.0%
AGGGATTGACTATGCTTCCG+TGG - chr1.2:17808921-17808940 MS.gene040901:CDS 50.0%
AGGGCACGCGAGAAACTTAT+AGG + chr1.2:17811986-17812005 None:intergenic 50.0%
CTTCCATGGCACAAAGTTGG+TGG - chr1.2:17812347-17812366 MS.gene040901:intron 50.0%
GAAGACGCGAAATCCATCCA+CGG + chr1.2:17808941-17808960 None:intergenic 50.0%
GACTGGGTCAAAATTGGGCT+AGG - chr1.2:17811516-17811535 MS.gene040901:intron 50.0%
GACTGGGTCAAAATTGGGCT+AGG + chr1.2:17811535-17811516 None:intergenic 50.0%
GCGTGAGAAGCTCATATGGT+AGG - chr1.2:17812103-17812122 MS.gene040901:intron 50.0%
GGGCACGCGAGAAACTTATA+GGG + chr1.2:17811985-17812004 None:intergenic 50.0%
GTGCTTCCATGGCACAAAGT+TGG - chr1.2:17812344-17812363 MS.gene040901:intron 50.0%
! CAAGAGCTAGAGTGCTTCCA+TGG - chr1.2:17812333-17812352 MS.gene040901:intron 50.0%
! CTGGGTCAAAATTGGGCTAG+GGG - chr1.2:17811518-17811537 MS.gene040901:intron 50.0%
! CTGGGTCAAAATTGGGCTAG+GGG + chr1.2:17811537-17811518 None:intergenic 50.0%
! CTTGTTGCTTCTTGTGCTCC+AGG + chr1.2:17812317-17812336 None:intergenic 50.0%
! GGGGCCTGAATCACAACTTT+TGG - chr1.2:17811598-17811617 MS.gene040901:intron 50.0%
! TGGGTCAAAATTGGGCTAGG+GGG - chr1.2:17811519-17811538 MS.gene040901:intron 50.0%
! TGGGTCAAAATTGGGCTAGG+GGG + chr1.2:17811538-17811519 None:intergenic 50.0%
TGCACTGCACTTCCTCCTCT+CGG - chr1.2:17809122-17809141 MS.gene040901:intron 55.0%
! CGCTGACGTGTCTGTTGACT+GGG + chr1.2:17810218-17810237 None:intergenic 55.0%
! GGGGCCTGAATCGCAACTTT+TGG + chr1.2:17810120-17810139 None:intergenic 55.0%
! GTCTTTGTGCGGGTACCGTT+TGG + chr1.2:17811730-17811749 None:intergenic 55.0%
!! ACAGGGTTGATGGAGAAGGC+TGG - chr1.2:17812407-17812426 MS.gene040901:CDS 55.0%
CTCACGCGCCCTATGCAGTT+TGG + chr1.2:17812090-17812109 None:intergenic 60.0%
GGGCGCGTGAGAAGCTCATA+TGG - chr1.2:17812099-17812118 MS.gene040901:intron 60.0%
TGACCCAGTCAACGCTGACG+TGG + chr1.2:17811506-17811525 None:intergenic 60.0%
! GCGCTGACGTGTCTGTTGAC+TGG + chr1.2:17810219-17810238 None:intergenic 60.0%
!! CGTCCACGTCAGCGTTGACT+GGG - chr1.2:17811500-17811519 MS.gene040901:intron 60.0%
!! GCGTCCACGTCAGCGTTGAC+TGG - chr1.2:17811499-17811518 MS.gene040901:intron 65.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 17808832 17812538 17808832 ID=MS.gene040901
chr1.2 mRNA 17808832 17812538 17808832 ID=MS.gene040901.t1;Parent=MS.gene040901
chr1.2 exon 17812407 17812538 17812407 ID=MS.gene040901.t1.exon1;Parent=MS.gene040901.t1
chr1.2 CDS 17812407 17812538 17812407 ID=cds.MS.gene040901.t1;Parent=MS.gene040901.t1
chr1.2 exon 17812254 17812302 17812254 ID=MS.gene040901.t1.exon2;Parent=MS.gene040901.t1
chr1.2 CDS 17812254 17812302 17812254 ID=cds.MS.gene040901.t1;Parent=MS.gene040901.t1
chr1.2 exon 17809457 17809656 17809457 ID=MS.gene040901.t1.exon3;Parent=MS.gene040901.t1
chr1.2 CDS 17809457 17809656 17809457 ID=cds.MS.gene040901.t1;Parent=MS.gene040901.t1
chr1.2 exon 17808832 17809086 17808832 ID=MS.gene040901.t1.exon4;Parent=MS.gene040901.t1
chr1.2 CDS 17808832 17809086 17808832 ID=cds.MS.gene040901.t1;Parent=MS.gene040901.t1
Gene Sequence

>MS.gene040901

ATGAGTGCCATTGTAATGTCAGGTTTGGCTCATTTGTTTGGAATCTTGTCCTTCATACTCATACTTGTTTGGTTGTTACATTTTCGCGAAGGGATTGACTATGCTTCCGTGGATGGATTTCGCGTCTTCAATGTAAATTAATTTCATGTTTTTTTTTCATTCCTTTGTTGTCAAATGTTACATAATCTATGATGTAAAACTTGTGTTTATTTATCTTTGATGTTTATTGTTTGCAGGTACACCCTTTAATGATGTTCCTGAGCCTTATTTTCCTTGCTGGTGAAGGTATATGCACTGCACTTCCTCCTCTCGGAGTCATATCTTACTAGAATGCTAGTTATCTACATCATGATATATACACACCATTAAAGTATGTTTCAAAGAGTTATTTTTTTAATAGTTTATTTAGACTTTATCTTATGACATAAACACTTTATCAAGTATCAACAGCTTATAAAAATAATTACACATATCCCTCCCTTTTTCTTTCTAGAAAACAACTACACATAATGCTTATATTCAATAAGCCCTTAATTAAATTGTTTTTCTAGAAACAATATGAATTTATGATACATTAAAATAATTAATAAACATAGTCATTATTTTGCTAAAAAAAAAACGTAGTCATTATTATCTTTAGACAATGCACTTATGCAAGAGTTACTATATCCTCTATATGCAAATGAAATTTAATTAATTCAATTTAGCATTATTTTGTCCCATTTAAACTAACCGGTGCATGTTTAAATGAGAATTGCTTTTATTAGATGAAATCAATATAAATCTCATCACTTTTTGTGTGATTCATTTTTAAAGTATGAGACTAACATTGATTTACTCGTTATAATTAATATTTCCCATATGATCATGTATGTTAAAGAAAGTGTTAAAAAAGAATAGGTGAGATCCTCTGAATTTAATAGACACTTCCATATGAAAAGAGATGGATTCATAAAATAAAATAATAATATTTTAAAAATAATATCATTTTATTCTATGAATTTATCTCTCTCCAACTAAATGTGCCCATTAAAAGGAGATGATTTTGACCATAAAAAAAGGTACCCATAACATCTCTAATATTTTAGATTGATGATGAGTTTGATAGAATAAAAGTTGATCATCACAATTTCGGTAAAAGTAATATTTTACAATTTCAACAAAACACAATGTCACCCTATTTCCTTGGAAGTCATCGTTAATCTAAACATACACTTAGTTGTCATGGTGTTTTCTTGAAAAGCAAATATATATGGCTTAATTACACTTTTGACCCCCTAAGTATCCAAAAGTTGCGATTCAGGCCCCCTAAAAAAAATAACTCTTTTCAGGCCCCTTAAGTTCACTTTTGGTTGCAATTTTGGCCCCCTAGCCCAATTTTGACCCAGTCAACAGACACGTCAGCGCCACGTGTGTAAATTTTTTTATTTTATTTTTTTAATTAGTAAAAAATAAAAAAAAAATATTTTTGTAATTAAAAAAATGTTTTTTTATTACAGAAATAAAAATGTTTTTTTTAATTACAAAAAAATTGAAAAAAAAAATCTGAAAATTAATACAAAAATTGAAAAAAAATATTATAAAATTCTGGAAAATTGAAAAATAAATAAAATTTTTTTTAAAAAATAAAAAAATTCTGGATAATTGAAAAATCAATAAAAAATGATTAAAAAAATAAAATAATCTAAAAAATTCTGAAAAAAATCTGGAAAAAATTATGAAAAAATAAAATTTCGAAATTTTCGAAAAAAAAATTCTGGAAAAAAATCTCTAAAAAATTCTAAAAAAAATTAAAATTCTGGAAAAATGAAATTTTTGAAATTTTAATGAAAAATAAAAATTCTGGAAAATATTTAAAAAAAATTCGAAATTTTGGAAAAAATTAAAAAGATTAATCATTTTTAAAAAAATGAAATTTTTGAAATTTTCATTAGTATTTCTCGAAATTTCGAAATTTTCATTAGTATATATGTCGAGCTTAGGTTTTTTCAGTGTATTTTTCGAAACTTCTAAATTTTCATTAGTATTTTTTCCGGAAAAATTTTCATTAGTATTTTTTCCGGGAAATTTTCATTATGTGTATTCCGGTTTACAAAAAATTATGTGTATTCCGGTTTATAAATACACAAAAATTCCCAGAAAAAATACGAATGAAAATTTCGAAATTTTTTAAATATTTTCCGTATTTTCCAGAATTTTCAATTTTTTCAATTTTCGAGAATTCCGTTTTCAAATTTTCCAGATATTTTCGAAATTTTTAAATTTTTTTAATTTTTTTCAATTTTTAAATTTTTTTAATACTAATGAATTTTCAATTTTTTAATCATTTTTTATTTTTATTAATTTTTCCTAAATTTTTAAATTTTTCCGTATTTTTTCAATTATTTTTCATTTTTATTAATTTTTCAATTTTCCAGAATTTTTTAATATTTTTTTTCAATTTCTTTATTAATTTTTCAATTTTCCAGAATTGTTTTCAATTTTTTTATTAATTTTTCAATTTTTCAGAATTTTTTAATATTTTTTTCCCAATTTTTTTATTAATTTTTCAATTTTTTAGAATTTTTAAAAAAAAATCAATTTTTTTTATTAATTTTTCATTTTTCCAGAATTTTTATTTATTTTTTAATTACAAAATTAAAAAAAAATATTAAAAAATTCAAATATGCGTCCACGTCAGCGTTGACTGGGTCAAAATTGGGCTAGGGGGCCAAAATTGCAACCAAAAGTGAACTTAAGGGGCCTGAAAAGAGTTATTTTTTTTAGGGGGCCTGAATCACAACTTTTGGATACTTAGGGGGCCAAAAGTGTAATTAAGCCAATATATATATATATATATATCTCAATTTATTCATTGGTTTGGTGTTGTTAAAATTTAACAGCTATTATGGCATTCCAAACGGTACCCGCACAAAGACATATCAGGAAGCTTGTTCATATGGCACTACACTTGATTGCTATTGTTTTTGGCATAGTTGGTTTGTGTGCAGTTTTCAAGTTCCATGATATGCTAAATATTCCGCATCTTTACAGTCTTCATGGATGGATTGGTATTGTCACCTTCTGCTTGTTTGGTTTGCAGGTAAACTTCATATCAATCATATATAAATGTTTTTTTAGGTAAAAATAGTTTGGTCGTTACTTTTTTCACCCTATAAGTTTCTCGCGTGCCCTATTTAAATTCTAAAATTCGAAATATTTCAATGTGTTTTTTTTGAGGTTTTATAGGGTTTTCATGCAGTTCGGATTCTAAATCCAAACTGCATAGGGCGCGTGAGAAGCTCATATGGTAGGAAAAAAAACAATCAAATAGTTTTAGGATATGTTCGGTTGTTTACAGAAAATTGAAGGTGTTTAGGCTTTATTTTGATAAATAGCTTATCTCACAACTTCTTATCATGATATACTGACTTTAATAATAGGTATAAGTTCATATTGTTGATTAATTGCAGTGGGTTTTTGGCTTGGTTACATTCTTGGTTCCTGGAGCACAAGAAGCAACAAGAGCTAGAGTGCTTCCATGGCACAAAGTTGGTGGTAAAGTACTATTTTTTATGGCAATATGTGCTGCATTAACAGGGTTGATGGAGAAGGCTGGTTTCTTGAAACTGAGGGCACATCAGACAGAAACTAATTTGGTCACCTTCACTGGTCTTTCAATTCTATTGTTTGGTGTTTTTGTCTACGTGTCTATTAGTGTTCGTTAA
Protein sequence

>MS.gene040901.t1

MSAIVMSGLAHLFGILSFILILVWLLHFREGIDYASVDGFRVFNVHPLMMFLSLIFLAGEAIMAFQTVPAQRHIRKLVHMALHLIAIVFGIVGLCAVFKFHDMLNIPHLYSLHGWIGIVTFCLFGLQWVFGLVTFLVPGAQEATRARVLPWHKVGGKVLFFMAICAALTGLMEKAGFLKLRAHQTETNLVTFTGLSILLFGVFVYVSISVR