AlfalfaGEDB | MS.gene042248

M. sativa cultivar XinJiangDaYe / MS.gene042248

KEGG: K15283
GO: GO:0003674 GO:0005215 GO:0005575 GO:0006810 GO:0008150 GO:0016021 GO:0022857 GO:0031224 GO:0051179 GO:0051234 GO:0055085 GO:0110165
PFAM: PF03151.19

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene042248.t1	XP_024638386.1	97.7	392	9	0	1	392	1	392	4.80E-212	746.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene042248.t1	Q94B38	77.7	399	71	5	1	392	1	388	9.0e-167	587.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene042248.t1	A0A396IJA1	97.7	392	9	0	1	392	1	392	3.5e-212	746.9

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene003243	MS.gene042248	PPI
MS.gene03172	MS.gene042248	PPI
MS.gene042248	MS.gene02045	PPI
MS.gene74587	MS.gene042248	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene042248.t1	MTR_4g131800	90.097	414	18	1	1	391	1	414	0.0	701
MS.gene042248.t1	MTR_2g022700	87.332	371	47	0	22	392	25	395	0.0	639
MS.gene042248.t1	MTR_3g049400	78.261	368	66	5	36	392	37	401	0.0	556
MS.gene042248.t1	MTR_2g029180	51.613	341	150	8	62	389	54	392	1.02e-98	300
MS.gene042248.t1	MTR_4g088350	44.781	297	155	4	99	391	97	388	5.07e-81	254
MS.gene042248.t1	MTR_5g044220	41.159	328	174	5	75	391	74	393	5.88e-78	246
MS.gene042248.t1	MTR_6g005480	46.774	310	154	5	92	392	101	408	1.10e-75	241
MS.gene042248.t1	MTR_4g105630	41.946	298	170	2	97	392	81	377	6.06e-72	230
MS.gene042248.t1	MTR_4g105630	40.893	291	169	2	97	385	81	370	4.87e-67	217
MS.gene042248.t1	MTR_3g077640	41.049	324	181	4	78	392	80	402	5.89e-67	218

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene042248.t1	AT1G61800	82.500	360	50	2	38	392	37	388	0.0	591
MS.gene042248.t1	AT1G61800	81.667	360	53	2	38	392	37	388	0.0	585
MS.gene042248.t1	AT5G54800	79.539	347	60	2	49	391	48	387	0.0	544
MS.gene042248.t1	AT5G17630	50.136	367	167	9	34	390	42	402	2.06e-112	335
MS.gene042248.t1	AT4G03950	56.997	293	69	6	101	392	18	254	2.64e-92	279
MS.gene042248.t1	AT5G46110	38.211	369	204	6	33	391	43	397	9.02e-81	254
MS.gene042248.t1	AT5G46110	38.211	369	204	6	33	391	43	397	9.49e-81	254
MS.gene042248.t1	AT5G46110	44.444	288	151	4	108	391	2	284	1.05e-79	247
MS.gene042248.t1	AT5G46110	37.127	369	197	7	33	391	43	386	1.20e-75	240
MS.gene042248.t1	AT3G01550	42.345	307	174	2	89	392	67	373	1.52e-68	221

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Find 98 sgRNAs with CRISPR-Local

Find 170 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCCAAATTAACTTTAG+GGG	0.568648	8.2:+3318522	None:intergenic
AACAACCAAACTCACAAGGA+GGG	0.622699	8.2:-3318800	MS.gene042248:CDS
AACATGGTGGGCTTTGAATG+TGG	0.587072	8.2:-3318668	MS.gene042248:CDS
AATGAAAGGTAAACTTGTAA+AGG	0.460416	8.2:+3318065	None:intergenic
AATGTGCATAGTTTAGGCCT+TGG	0.452348	8.2:+3318919	None:intergenic
ACCAGCAGCAAGGGACAAAG+TGG	0.537499	8.2:+3318588	None:intergenic
AGAGTTTGATGAACCAAAGT+TGG	0.496961	8.2:+3318945	None:intergenic
AGCAGATAGGTCACAGCCAT+TGG	0.485312	8.2:-3318755	MS.gene042248:CDS
AGCCAGCAGCCCACATCTTT+GGG	0.269548	8.2:+3317542	None:intergenic
AGGAATATATTCTCAAAGAA+GGG	0.541673	8.2:-3317661	MS.gene042248:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAATAGAAGGAAAGGGAA+TGG	+	chr8.2:3318826-3318845	None:intergenic	30.0%
AGGTCAATATTAATCTCCAA+TGG	+	chr8.2:3316782-3316801	None:intergenic	30.0%
ATATATGTCAGTGTCTATGT+CGG	+	chr8.2:3317674-3317693	None:intergenic	30.0%
CGGACATAAAAAATAGTGAA+TGG	+	chr8.2:3318868-3318887	None:intergenic	30.0%
CTCCATTAACATTTAGCATA+GGG	-	chr8.2:3318678-3318697	MS.gene042248:CDS	30.0%
GAAAGCAAAAATAGAAGGAA+AGG	+	chr8.2:3318832-3318851	None:intergenic	30.0%
GTATATGTTTCAGGGTTTAT+GGG	-	chr8.2:3317803-3317822	MS.gene042248:intron	30.0%
TATATGTTTCAGGGTTTATG+GGG	-	chr8.2:3317804-3317823	MS.gene042248:intron	30.0%
TATTTGTGTTCTTTCCAACA+GGG	+	chr8.2:3316637-3316656	None:intergenic	30.0%
TCTCATCATGTTAATCTCAT+GGG	-	chr8.2:3316955-3316974	MS.gene042248:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.2	gene	3316533	3319007	3316533	ID=MS.gene042248
chr8.2	mRNA	3316533	3319007	3316533	ID=MS.gene042248.t1;Parent=MS.gene042248
chr8.2	exon	3318504	3319007	3318504	ID=MS.gene042248.t1.exon1;Parent=MS.gene042248.t1
chr8.2	CDS	3318504	3319007	3318504	ID=cds.MS.gene042248.t1;Parent=MS.gene042248.t1
chr8.2	exon	3318003	3318228	3318003	ID=MS.gene042248.t1.exon2;Parent=MS.gene042248.t1
chr8.2	CDS	3318003	3318228	3318003	ID=cds.MS.gene042248.t1;Parent=MS.gene042248.t1
chr8.2	exon	3317502	3317724	3317502	ID=MS.gene042248.t1.exon3;Parent=MS.gene042248.t1
chr8.2	CDS	3317502	3317724	3317502	ID=cds.MS.gene042248.t1;Parent=MS.gene042248.t1
chr8.2	exon	3316720	3316933	3316720	ID=MS.gene042248.t1.exon4;Parent=MS.gene042248.t1
chr8.2	CDS	3316720	3316933	3316720	ID=cds.MS.gene042248.t1;Parent=MS.gene042248.t1
chr8.2	exon	3316533	3316544	3316533	ID=MS.gene042248.t1.exon5;Parent=MS.gene042248.t1
chr8.2	CDS	3316533	3316544	3316533	ID=cds.MS.gene042248.t1;Parent=MS.gene042248.t1

Gene Sequence

>MS.gene042248

ATGATATCACAAGTCAAGTATACATCATCATTACCCTTTACCAACTTTGGTTCATCAAACTCTATTCCAAGGCCTAAACTATGCACATTACCCATTATTCACCCTGTTGGAAAGAACACAAATAACCTCTCTTTGTCTTCTCTCAAACCTCTTTACATATCATCCACTGAAAACTTCAGTTTCTCAACAACCAAACTCACAAGGAGGGAAACTGAGTGTCATGCCTATGAAGCAGATAGGTCACAGCCATTGGAGATTAATATTGACCTACCAGGTGAACAAGCAGCTCAGAAACTCAAAATTGGTTTGTATTTTGCAACATGGTGGGCTTTGAATGTGGTTTTCAATATTTACAACAAGAAGGTTTTGAATGCTTTTCCTTATCCTTGGCTTACTTCCACTTTGTCCCTTGCTGCTGGTTCTCTCATCATGTTAATCTCATGGGCTACTAGGGTTGCTGAGGCCCCTAAAGTTAATTTGGATTTTTGGAAGGCCTTGTTTCCTGTAAGCATGCAAACTCTTTTGGTTTCCTTTTTCTTAATTTTATTGCTTTTCACATCATATGATAAAATTGATTCTTACATGTATGAATGTTTCTGAGTTAATTTTGACTTCAGAATTAAGTGTGTTTCTGCAGTGATAAAATTGATTTTGAATGAATTGGTTATGTAAGAAACACACTTAATTCTGAAGTCAAAATTACAGGAACAAACTCTAAGATTCTTGCTTTCGAAGTACGGAATATTGATTTAGTACTGAATGGGGAATTTAAACTGCAGGTTGCAGTGGCACATACAATTGGGCATGTTGCAGCTACTGTGAGTATGTCCAAAGTTGCAGTTTCATTTACACACATAATCAAAAGTGGAGAACCTGCTTTCAGTGTTCTTGTATCAAGATTTTTGCTTGGTGAAGCATTCCCTTTACAAGTTTACCTTTCATTGCTGCCAATTATTGGAGGTTGTGCACTTGCTGCTGTCACAGAACTTAATTTCAATATGATTGGTAAGACTATATTCACTTATTTACATGGTTGGTTTTCGGATGCTGATTATGTTCTGTTTATAGTAGATTGGGTTGATAATAGGATGTGAAACTATATAACACTAACACTTCCAATTGAAGGTGTGTTAGGTATCCGACATAGACACTGACATATATACTTACATTCAATCGTTCTATTTTCTCTTATTAATACCAGTGTCGACATATCAGTGTCATGTATGTGTTTCACAGATGTTAAATATGTAGTTTGTTGACAATATGTCTTGTATATGTTTCAGGGTTTATGGGGGCTATGATATCCAATGTGGCCTTTGTGTTTAGGAATATATTCTCAAAGAAGGGAATGAAAGGAATGTCTGTTAGTGGAATGAACTATTATGCTTGCCTCTCCATATTATCTCTACTGCTTCTCACCCCTTTTGCTATTGCTGTGGAAGGCCCAAAGATGTGGGCTGCTGGCTGGCAAACAGCAGTGTCCCAGATTGGTCCCAATTTTGTATGGTAAGCTTAACAATCTACACATCTCAACCCATTGTTGTGTACTATTTCATATCCATTATATTTCTAAGGTCTTTTTGTGGATAAACAACTTAAATAAAAGTTTATATCTTAAACGCCAATCATAAAAGTTTTTATGTATAAGCTATTTCTATAACAAAAATAAGATAAGTCAAATTGTTTTCATATTAGCTTTAAGCTGTTTTCATAAGCTATCCTAAAGAGCTTATGGATATGAGTTGAAAGCAACTTATAGACATGTTATAAGTTGTTTCTATAAGCTCTCTCATAGGGTCTAACAAATGCACTGTGGGTCCAAACAGACCCTTAGTCGAACTGTTTTACAGTCTTTTTAAAAGTTAAACATTCATTCGAAAGATATGCGCAAACCATACTAGTGTGTGGAGATCATGGTGATTTAATTCACATAAGTCAGTAATTGAGTAGTCCTTGACCATGAATATTGATAATGCTTCTTCAAAAGGGTCTATGGAGCTAGAAGAATTATTCTATAGTGATTGTGAAGTGTTTGTCATTTGACTAATGAACTTATGGGTAGTAATTTTTTCAGGTGGGTAGCTGCACAAAGTGTGTTCTATCACTTGTACAATCAAGTCTCTTATATGTCTCTTGATCAGATTTCTCCATTAACATTTAGCATAGGGAACACGATGAAGAGAATCTCGGTTATTGTCTCTTCGATCATTATCTTTCACACGCCAATTCAGCCAAACAATGCCCTTGGTGCTGCCATTGCAATCCTTGGCACCTTCCTCTATTCACAGGTCCATTCCCTTTCCTTCTATTTTTGCTTTCTTATTCAGTATAACCATTCACTATTTTTTATGTCCGTTCATTTTATATATACATGTGCGCGCGCCTGTGTGTCAACAATAAAATTATATTTCTCAATACTTGTGACAAAACTAATTTGTTTGTTTCTTTTTATTTATTTCACAGGCCAAACAGTAA

Protein sequence

>MS.gene042248.t1

MISQVKYTSSLPFTNFGSSNSIPRPKLCTLPIIHPVGKNTNNLSLSSLKPLYISSTENFSFSTTKLTRRETECHAYEADRSQPLEINIDLPGEQAAQKLKIGLYFATWWALNVVFNIYNKKVLNAFPYPWLTSTLSLAAGSLIMLISWATRVAEAPKVNLDFWKALFPVAVAHTIGHVAATVSMSKVAVSFTHIIKSGEPAFSVLVSRFLLGEAFPLQVYLSLLPIIGGCALAAVTELNFNMIGFMGAMISNVAFVFRNIFSKKGMKGMSVSGMNYYACLSILSLLLLTPFAIAVEGPKMWAAGWQTAVSQIGPNFVWWVAAQSVFYHLYNQVSYMSLDQISPLTFSIGNTMKRISVIVSSIIIFHTPIQPNNALGAAIAILGTFLYSQAKQ