Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene042248.t1 | XP_024638386.1 | 97.7 | 392 | 9 | 0 | 1 | 392 | 1 | 392 | 4.80E-212 | 746.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene042248.t1 | Q94B38 | 77.7 | 399 | 71 | 5 | 1 | 392 | 1 | 388 | 9.0e-167 | 587.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene042248.t1 | A0A396IJA1 | 97.7 | 392 | 9 | 0 | 1 | 392 | 1 | 392 | 3.5e-212 | 746.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene03172 | MS.gene042248 | PPI |
| MS.gene003243 | MS.gene042248 | PPI |
| MS.gene74587 | MS.gene042248 | PPI |
| MS.gene042248 | MS.gene02045 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene042248.t1 | MTR_4g131800 | 90.097 | 414 | 18 | 1 | 1 | 391 | 1 | 414 | 0.0 | 701 |
| MS.gene042248.t1 | MTR_2g022700 | 87.332 | 371 | 47 | 0 | 22 | 392 | 25 | 395 | 0.0 | 639 |
| MS.gene042248.t1 | MTR_3g049400 | 78.261 | 368 | 66 | 5 | 36 | 392 | 37 | 401 | 0.0 | 556 |
| MS.gene042248.t1 | MTR_2g029180 | 51.613 | 341 | 150 | 8 | 62 | 389 | 54 | 392 | 1.02e-98 | 300 |
| MS.gene042248.t1 | MTR_4g088350 | 44.781 | 297 | 155 | 4 | 99 | 391 | 97 | 388 | 5.07e-81 | 254 |
| MS.gene042248.t1 | MTR_5g044220 | 41.159 | 328 | 174 | 5 | 75 | 391 | 74 | 393 | 5.88e-78 | 246 |
| MS.gene042248.t1 | MTR_6g005480 | 46.774 | 310 | 154 | 5 | 92 | 392 | 101 | 408 | 1.10e-75 | 241 |
| MS.gene042248.t1 | MTR_4g105630 | 41.946 | 298 | 170 | 2 | 97 | 392 | 81 | 377 | 6.06e-72 | 230 |
| MS.gene042248.t1 | MTR_4g105630 | 40.893 | 291 | 169 | 2 | 97 | 385 | 81 | 370 | 4.87e-67 | 217 |
| MS.gene042248.t1 | MTR_3g077640 | 41.049 | 324 | 181 | 4 | 78 | 392 | 80 | 402 | 5.89e-67 | 218 |
| MS.gene042248.t1 | MTR_4g088350 | 42.910 | 268 | 144 | 4 | 128 | 391 | 15 | 277 | 6.20e-66 | 211 |
| MS.gene042248.t1 | MTR_4g105630 | 38.174 | 241 | 146 | 2 | 97 | 335 | 81 | 320 | 3.66e-46 | 162 |
| MS.gene042248.t1 | MTR_4g105630 | 40.000 | 215 | 127 | 1 | 97 | 309 | 81 | 295 | 7.60e-44 | 155 |
| MS.gene042248.t1 | MTR_1g030320 | 26.557 | 305 | 185 | 7 | 108 | 392 | 21 | 306 | 6.73e-24 | 101 |
| MS.gene042248.t1 | MTR_3g072380 | 26.230 | 305 | 186 | 7 | 108 | 392 | 22 | 307 | 3.83e-23 | 99.4 |
| MS.gene042248.t1 | MTR_3g072380 | 30.357 | 168 | 107 | 3 | 108 | 268 | 22 | 186 | 6.23e-17 | 80.1 |
| MS.gene042248.t1 | MTR_3g070000 | 22.531 | 324 | 228 | 11 | 84 | 392 | 4 | 319 | 1.43e-16 | 80.5 |
| MS.gene042248.t1 | MTR_5g081710 | 22.727 | 308 | 224 | 9 | 93 | 392 | 2 | 303 | 4.93e-15 | 75.5 |
| MS.gene042248.t1 | MTR_3g462070 | 21.918 | 292 | 217 | 6 | 108 | 392 | 17 | 304 | 1.82e-14 | 73.9 |
| MS.gene042248.t1 | MTR_4g018760 | 22.526 | 293 | 216 | 6 | 107 | 392 | 19 | 307 | 2.50e-13 | 70.5 |
| MS.gene042248.t1 | MTR_4g101860 | 21.839 | 348 | 241 | 8 | 67 | 392 | 9 | 347 | 3.81e-12 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene042248.t1 | AT1G61800 | 82.500 | 360 | 50 | 2 | 38 | 392 | 37 | 388 | 0.0 | 591 |
| MS.gene042248.t1 | AT1G61800 | 81.667 | 360 | 53 | 2 | 38 | 392 | 37 | 388 | 0.0 | 585 |
| MS.gene042248.t1 | AT5G54800 | 79.539 | 347 | 60 | 2 | 49 | 391 | 48 | 387 | 0.0 | 544 |
| MS.gene042248.t1 | AT5G17630 | 50.136 | 367 | 167 | 9 | 34 | 390 | 42 | 402 | 2.06e-112 | 335 |
| MS.gene042248.t1 | AT4G03950 | 56.997 | 293 | 69 | 6 | 101 | 392 | 18 | 254 | 2.64e-92 | 279 |
| MS.gene042248.t1 | AT5G46110 | 38.211 | 369 | 204 | 6 | 33 | 391 | 43 | 397 | 9.02e-81 | 254 |
| MS.gene042248.t1 | AT5G46110 | 38.211 | 369 | 204 | 6 | 33 | 391 | 43 | 397 | 9.49e-81 | 254 |
| MS.gene042248.t1 | AT5G46110 | 44.444 | 288 | 151 | 4 | 108 | 391 | 2 | 284 | 1.05e-79 | 247 |
| MS.gene042248.t1 | AT5G46110 | 37.127 | 369 | 197 | 7 | 33 | 391 | 43 | 386 | 1.20e-75 | 240 |
| MS.gene042248.t1 | AT3G01550 | 42.345 | 307 | 174 | 2 | 89 | 392 | 67 | 373 | 1.52e-68 | 221 |
| MS.gene042248.t1 | AT3G01550 | 41.368 | 307 | 172 | 3 | 89 | 392 | 67 | 368 | 1.99e-64 | 210 |
| MS.gene042248.t1 | AT5G33320 | 38.650 | 326 | 191 | 3 | 74 | 391 | 75 | 399 | 5.83e-63 | 207 |
| MS.gene042248.t1 | AT1G77610 | 25.503 | 298 | 197 | 5 | 108 | 392 | 16 | 301 | 2.46e-23 | 100 |
| MS.gene042248.t1 | AT1G21870 | 25.503 | 298 | 197 | 6 | 108 | 392 | 22 | 307 | 9.72e-23 | 98.6 |
| MS.gene042248.t1 | AT5G05820 | 24.000 | 300 | 214 | 9 | 101 | 392 | 12 | 305 | 6.00e-18 | 84.3 |
| MS.gene042248.t1 | AT3G11320 | 23.333 | 300 | 216 | 9 | 101 | 392 | 12 | 305 | 3.32e-16 | 79.0 |
| MS.gene042248.t1 | AT1G12500 | 23.729 | 295 | 212 | 7 | 106 | 392 | 64 | 353 | 4.69e-14 | 73.2 |
Find 98 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTATATGTTTCAGGGTTTA+TGG | 0.101964 | 8.2:-3317716 | MS.gene042248:intron |
| CTTTCATTGCTGCCAATTAT+TGG | 0.180449 | 8.2:-3318050 | MS.gene042248:CDS |
| TTAAGCTTACCATACAAAAT+TGG | 0.184444 | 8.2:+3317492 | None:intergenic |
| GAGAAGCAGTAGAGATAATA+TGG | 0.194779 | 8.2:+3317591 | None:intergenic |
| CAGCCAGCAGCCCACATCTT+TGG | 0.196761 | 8.2:+3317541 | None:intergenic |
| TTCCCTATGCTAAATGTTAA+TGG | 0.247165 | 8.2:+3316838 | None:intergenic |
| TGAGGCCCCTAAAGTTAATT+TGG | 0.255186 | 8.2:-3318527 | MS.gene042248:CDS |
| CCAATGTGGCCTTTGTGTTT+AGG | 0.259810 | 8.2:-3317681 | MS.gene042248:CDS |
| AGCCAGCAGCCCACATCTTT+GGG | 0.269548 | 8.2:+3317542 | None:intergenic |
| AGTTTCCCTCCTTGTGAGTT+TGG | 0.275392 | 8.2:+3318795 | None:intergenic |
| GCAGCTCAGAAACTCAAAAT+TGG | 0.310246 | 8.2:-3318703 | MS.gene042248:CDS |
| AGGGCATTGTTTGGCTGAAT+TGG | 0.315373 | 8.2:+3316763 | None:intergenic |
| CTTTCCAACAGGGTGAATAA+TGG | 0.322181 | 8.2:+3318894 | None:intergenic |
| GTATATGTTTCAGGGTTTAT+GGG | 0.323201 | 8.2:-3317715 | MS.gene042248:intron |
| CTAAAATACACATTACTGTT+TGG | 0.328456 | 8.2:+3316521 | None:intergenic |
| AGTGCACAACCTCCAATAAT+TGG | 0.333090 | 8.2:+3318038 | None:intergenic |
| TGTTAATCTCATGGGCTACT+AGG | 0.338741 | 8.2:-3318555 | MS.gene042248:CDS |
| TTATTTGTGTTCTTTCCAAC+AGG | 0.349705 | 8.2:+3318883 | None:intergenic |
| GAACTTAATTTCAATATGAT+TGG | 0.357019 | 8.2:-3318002 | MS.gene042248:intron |
| TGTAAATGAAACTGCAACTT+TGG | 0.364668 | 8.2:+3318157 | None:intergenic |
| TTTCCAACAGGGTGAATAAT+GGG | 0.368520 | 8.2:+3318895 | None:intergenic |
| CTGTGACCTATCTGCTTCAT+AGG | 0.377418 | 8.2:+3318762 | None:intergenic |
| TCCACTTTGTCCCTTGCTGC+TGG | 0.380408 | 8.2:-3318589 | MS.gene042248:CDS |
| TAAGCTTACCATACAAAATT+GGG | 0.391221 | 8.2:+3317493 | None:intergenic |
| GTTGCAGTGGCACATACAAT+TGG | 0.392389 | 8.2:-3318206 | MS.gene042248:CDS |
| TTCTGAGCTGCTTGTTCACC+TGG | 0.392509 | 8.2:+3318715 | None:intergenic |
| GGTGCTGCCATTGCAATCCT+TGG | 0.398279 | 8.2:-3316739 | MS.gene042248:CDS |
| CTCTCATCATGTTAATCTCA+TGG | 0.398591 | 8.2:-3318564 | MS.gene042248:CDS |
| TCATTACCCTTTACCAACTT+TGG | 0.400604 | 8.2:-3318958 | MS.gene042248:CDS |
| GGCCCAAAGATGTGGGCTGC+TGG | 0.405747 | 8.2:-3317544 | MS.gene042248:CDS |
| TAGGAATATATTCTCAAAGA+AGG | 0.412057 | 8.2:-3317662 | MS.gene042248:CDS |
| CAAAGATGTGGGCTGCTGGC+TGG | 0.414219 | 8.2:-3317540 | MS.gene042248:CDS |
| ATGGGTAATGTGCATAGTTT+AGG | 0.414988 | 8.2:+3318913 | None:intergenic |
| GATGAACCAAAGTTGGTAAA+GGG | 0.421343 | 8.2:+3318952 | None:intergenic |
| GCAGCACCAAGGGCATTGTT+TGG | 0.422130 | 8.2:+3316754 | None:intergenic |
| TACAAAATTGGGACCAATCT+GGG | 0.424232 | 8.2:+3317504 | None:intergenic |
| ATACAAAATTGGGACCAATC+TGG | 0.428493 | 8.2:+3317503 | None:intergenic |
| CTCCATTAACATTTAGCATA+GGG | 0.437899 | 8.2:-3316840 | MS.gene042248:CDS |
| CCTTCCACAGCAATAGCAAA+AGG | 0.450440 | 8.2:+3317565 | None:intergenic |
| AATGTGCATAGTTTAGGCCT+TGG | 0.452348 | 8.2:+3318919 | None:intergenic |
| ATGAAAGGTAAACTTGTAAA+GGG | 0.453481 | 8.2:+3318066 | None:intergenic |
| AATGAAAGGTAAACTTGTAA+AGG | 0.460416 | 8.2:+3318065 | None:intergenic |
| TGATGAACCAAAGTTGGTAA+AGG | 0.462222 | 8.2:+3318951 | None:intergenic |
| TCATTGCTGCCAATTATTGG+AGG | 0.465645 | 8.2:-3318047 | MS.gene042248:CDS |
| TATATGTTTCAGGGTTTATG+GGG | 0.470350 | 8.2:-3317714 | MS.gene042248:intron |
| TTACCCATTATTCACCCTGT+TGG | 0.474011 | 8.2:-3318898 | MS.gene042248:CDS |
| TTTACACACATAATCAAAAG+TGG | 0.474109 | 8.2:-3318140 | MS.gene042248:CDS |
| AGCAGATAGGTCACAGCCAT+TGG | 0.485312 | 8.2:-3318755 | MS.gene042248:CDS |
| TTTCAATATTTACAACAAGA+AGG | 0.489567 | 8.2:-3318644 | MS.gene042248:CDS |
| GTTAATCTCATGGGCTACTA+GGG | 0.492852 | 8.2:-3318554 | MS.gene042248:CDS |
| AGAGTTTGATGAACCAAAGT+TGG | 0.496961 | 8.2:+3318945 | None:intergenic |
| GTGGAAGTAAGCCAAGGATA+AGG | 0.497515 | 8.2:+3318607 | None:intergenic |
| TGGCACCTTCCTCTATTCAC+AGG | 0.498982 | 8.2:-3316719 | MS.gene042248:intron |
| ATGAAAGGAATGTCTGTTAG+TGG | 0.500986 | 8.2:-3317637 | MS.gene042248:CDS |
| TTGCAGTGGCACATACAATT+GGG | 0.501192 | 8.2:-3318205 | MS.gene042248:CDS |
| TCTCCATTAACATTTAGCAT+AGG | 0.504196 | 8.2:-3316841 | MS.gene042248:CDS |
| GGGAATGGACCTGTGAATAG+AGG | 0.507084 | 8.2:+3316710 | None:intergenic |
| CTTCCACAGCAATAGCAAAA+GGG | 0.507964 | 8.2:+3317566 | None:intergenic |
| TCAGTGGATGATATGTAAAG+AGG | 0.515667 | 8.2:+3318838 | None:intergenic |
| GAGCTGCTTGTTCACCTGGT+AGG | 0.516916 | 8.2:+3318719 | None:intergenic |
| GTTCATCAAACTCTATTCCA+AGG | 0.531276 | 8.2:-3318936 | MS.gene042248:CDS |
| CAAACAGCAGTGTCCCAGAT+TGG | 0.535343 | 8.2:-3317517 | MS.gene042248:CDS |
| TTCTCAAAGAAGGGAATGAA+AGG | 0.535780 | 8.2:-3317652 | MS.gene042248:CDS |
| ACCAGCAGCAAGGGACAAAG+TGG | 0.537499 | 8.2:+3318588 | None:intergenic |
| AGGAATATATTCTCAAAGAA+GGG | 0.541673 | 8.2:-3317661 | MS.gene042248:CDS |
| CCTAAACACAAAGGCCACAT+TGG | 0.548843 | 8.2:+3317681 | None:intergenic |
| CAATAATTGGCAGCAATGAA+AGG | 0.550796 | 8.2:+3318051 | None:intergenic |
| ATTCAGCCAAACAATGCCCT+TGG | 0.558227 | 8.2:-3316760 | MS.gene042248:CDS |
| TCTCATCATGTTAATCTCAT+GGG | 0.562801 | 8.2:-3318563 | MS.gene042248:CDS |
| GTTTGAGAGAAGACAAAGAG+AGG | 0.565693 | 8.2:+3318860 | None:intergenic |
| AAAATCCAAATTAACTTTAG+GGG | 0.568648 | 8.2:+3318522 | None:intergenic |
| GATGAGAGAACCAGCAGCAA+GGG | 0.572112 | 8.2:+3318579 | None:intergenic |
| ATTTAAACTGCAGGTTGCAG+TGG | 0.576270 | 8.2:-3318219 | MS.gene042248:intron |
| ATGGGCTACTAGGGTTGCTG+AGG | 0.583408 | 8.2:-3318545 | MS.gene042248:CDS |
| AGGTCAATATTAATCTCCAA+TGG | 0.584548 | 8.2:+3318739 | None:intergenic |
| AACATGGTGGGCTTTGAATG+TGG | 0.587072 | 8.2:-3318668 | MS.gene042248:CDS |
| GATTGCAATGGCAGCACCAA+GGG | 0.590233 | 8.2:+3316744 | None:intergenic |
| GATACAAGAACACTGAAAGC+AGG | 0.598642 | 8.2:+3318113 | None:intergenic |
| TTGCATGCTTACAGGAAACA+AGG | 0.604931 | 8.2:+3318492 | None:intergenic |
| CTGTGGAAGGCCCAAAGATG+TGG | 0.607847 | 8.2:-3317552 | MS.gene042248:CDS |
| GTGAATAGAGGAAGGTGCCA+AGG | 0.609003 | 8.2:+3316722 | None:intergenic |
| TTCCACAGCAATAGCAAAAG+GGG | 0.609710 | 8.2:+3317567 | None:intergenic |
| GTCATGCCTATGAAGCAGAT+AGG | 0.618296 | 8.2:-3318768 | MS.gene042248:CDS |
| AACAACCAAACTCACAAGGA+GGG | 0.622699 | 8.2:-3318800 | MS.gene042248:CDS |
| ATATGTTTCAGGGTTTATGG+GGG | 0.623221 | 8.2:-3317713 | MS.gene042248:intron |
| TGATGAGAGAACCAGCAGCA+AGG | 0.629327 | 8.2:+3318578 | None:intergenic |
| GACAAAGTGGAAGTAAGCCA+AGG | 0.631812 | 8.2:+3318601 | None:intergenic |
| GAAGGTGCCAAGGATTGCAA+TGG | 0.634289 | 8.2:+3316732 | None:intergenic |
| GAACACGATGAAGAGAATCT+CGG | 0.638378 | 8.2:-3316818 | MS.gene042248:CDS |
| ATGGACCTGTGAATAGAGGA+AGG | 0.642169 | 8.2:+3316714 | None:intergenic |
| GAGATTAATATTGACCTACC+AGG | 0.648457 | 8.2:-3318733 | MS.gene042248:CDS |
| GGATTGCAATGGCAGCACCA+AGG | 0.661338 | 8.2:+3316743 | None:intergenic |
| TATTTGTGTTCTTTCCAACA+GGG | 0.663249 | 8.2:+3318884 | None:intergenic |
| GCAGTAGAGATAATATGGAG+AGG | 0.668394 | 8.2:+3317596 | None:intergenic |
| TGTGGAAGGCCCAAAGATGT+GGG | 0.679025 | 8.2:-3317551 | MS.gene042248:CDS |
| GAATATATTCCTAAACACAA+AGG | 0.680902 | 8.2:+3317672 | None:intergenic |
| CAACAACCAAACTCACAAGG+AGG | 0.683879 | 8.2:-3318801 | MS.gene042248:CDS |
| TCTCAACAACCAAACTCACA+AGG | 0.695316 | 8.2:-3318804 | MS.gene042248:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATCCAAATTAACTTTA+GGG | + | chr8.2:3317000-3317019 | None:intergenic | 15.0% |
| !! | AAGCAATAAAATTAAGAAAA+AGG | + | chr8.2:3317065-3317084 | None:intergenic | 15.0% |
| !! | ACATGTATATATAAAATGAA+CGG | + | chr8.2:3318888-3318907 | None:intergenic | 15.0% |
| !!! | AAAATTGATTTTGAATGAAT+TGG | - | chr8.2:3317174-3317193 | MS.gene042248:intron | 15.0% |
| !!! | TACATAAAAACTTTTATGAT+TGG | + | chr8.2:3318157-3318176 | None:intergenic | 15.0% |
| !!! | TTTCTTTTTATTTATTTCAC+AGG | - | chr8.2:3318974-3318993 | MS.gene042248:CDS | 15.0% |
| !! | AAAAGACCTTAGAAATATAA+TGG | + | chr8.2:3318094-3318113 | None:intergenic | 20.0% |
| !! | AAAATCCAAATTAACTTTAG+GGG | + | chr8.2:3316999-3317018 | None:intergenic | 20.0% |
| !! | AATAAGAAAGCAAAAATAGA+AGG | + | chr8.2:3318837-3318856 | None:intergenic | 20.0% |
| !! | ACTATATTCACTTATTTACA+TGG | - | chr8.2:3317543-3317562 | MS.gene042248:CDS | 20.0% |
| !! | CAAAAATCCAAATTAACTTT+AGG | + | chr8.2:3317001-3317020 | None:intergenic | 20.0% |
| !! | GAACTTAATTTCAATATGAT+TGG | - | chr8.2:3317516-3317535 | MS.gene042248:CDS | 20.0% |
| !! | TTTCAATATTTACAACAAGA+AGG | - | chr8.2:3316874-3316893 | MS.gene042248:CDS | 20.0% |
| !!! | AATATTGATTTAGTACTGAA+TGG | - | chr8.2:3317273-3317292 | MS.gene042248:intron | 20.0% |
| !!! | ATATTGATTTAGTACTGAAT+GGG | - | chr8.2:3317274-3317293 | MS.gene042248:intron | 20.0% |
| !!! | CTAAAGTTAATTTGGATTTT+TGG | - | chr8.2:3316999-3317018 | MS.gene042248:intron | 20.0% |
| !!! | TCATATCCATTATATTTCTA+AGG | - | chr8.2:3318085-3318104 | MS.gene042248:CDS | 20.0% |
| ! | AAAGCAAAAATAGAAGGAAA+GGG | + | chr8.2:3318831-3318850 | None:intergenic | 25.0% |
| ! | AATGAAAGGTAAACTTGTAA+AGG | + | chr8.2:3317456-3317475 | None:intergenic | 25.0% |
| ! | AGGAATATATTCTCAAAGAA+GGG | - | chr8.2:3317857-3317876 | MS.gene042248:intron | 25.0% |
| ! | ATATGTCTTGTATATGTTTC+AGG | - | chr8.2:3317794-3317813 | MS.gene042248:intron | 25.0% |
| ! | ATGAAAGGTAAACTTGTAAA+GGG | + | chr8.2:3317455-3317474 | None:intergenic | 25.0% |
| ! | ATGAAATAGTACACAACAAT+GGG | + | chr8.2:3318069-3318088 | None:intergenic | 25.0% |
| ! | ATGTTCTGTTTATAGTAGAT+TGG | - | chr8.2:3317586-3317605 | MS.gene042248:CDS | 25.0% |
| ! | ATTATCAATATTCATGGTCA+AGG | + | chr8.2:3318487-3318506 | None:intergenic | 25.0% |
| ! | CATTTGACTAATGAACTTAT+GGG | - | chr8.2:3318569-3318588 | MS.gene042248:CDS | 25.0% |
| ! | GAATATATTCCTAAACACAA+AGG | + | chr8.2:3317849-3317868 | None:intergenic | 25.0% |
| ! | TAAGCTTACCATACAAAATT+GGG | + | chr8.2:3318028-3318047 | None:intergenic | 25.0% |
| ! | TAGGAATATATTCTCAAAGA+AGG | - | chr8.2:3317856-3317875 | MS.gene042248:intron | 25.0% |
| ! | TATGAAATAGTACACAACAA+TGG | + | chr8.2:3318070-3318089 | None:intergenic | 25.0% |
| ! | TATGTCTTGTATATGTTTCA+GGG | - | chr8.2:3317795-3317814 | MS.gene042248:intron | 25.0% |
| ! | TATTCACTTATTTACATGGT+TGG | - | chr8.2:3317547-3317566 | MS.gene042248:CDS | 25.0% |
| ! | TCATTTGACTAATGAACTTA+TGG | - | chr8.2:3318568-3318587 | MS.gene042248:CDS | 25.0% |
| ! | TGTTCTGTTTATAGTAGATT+GGG | - | chr8.2:3317587-3317606 | MS.gene042248:CDS | 25.0% |
| ! | TTAAGCTTACCATACAAAAT+TGG | + | chr8.2:3318029-3318048 | None:intergenic | 25.0% |
| ! | TTTACACACATAATCAAAAG+TGG | - | chr8.2:3317378-3317397 | MS.gene042248:intron | 25.0% |
| !! | TAATTTTATTGTTGACACAC+AGG | + | chr8.2:3318918-3318937 | None:intergenic | 25.0% |
| !!! | AATTCTGAAGTCAAAATTAC+AGG | - | chr8.2:3317216-3317235 | MS.gene042248:intron | 25.0% |
| !!! | AGAAGCATTATCAATATTCA+TGG | + | chr8.2:3318493-3318512 | None:intergenic | 25.0% |
| !!! | AGTTAATTTGGATTTTTGGA+AGG | - | chr8.2:3317003-3317022 | MS.gene042248:intron | 25.0% |
| !!! | ATATTTCTAAGGTCTTTTTG+TGG | - | chr8.2:3318096-3318115 | MS.gene042248:CDS | 25.0% |
| !!! | ATTGATAATGCTTCTTCAAA+AGG | - | chr8.2:3318498-3318517 | MS.gene042248:intron | 25.0% |
| !!! | TATTGATTTAGTACTGAATG+GGG | - | chr8.2:3317275-3317294 | MS.gene042248:intron | 25.0% |
| !!! | TTATGGGTAGTAATTTTTTC+AGG | - | chr8.2:3318585-3318604 | MS.gene042248:CDS | 25.0% |
| !!! | TTATTTACATGGTTGGTTTT+CGG | - | chr8.2:3317554-3317573 | MS.gene042248:CDS | 25.0% |
| !!! | TTGATAATGCTTCTTCAAAA+GGG | - | chr8.2:3318499-3318518 | MS.gene042248:intron | 25.0% |
| AAAAATAGAAGGAAAGGGAA+TGG | + | chr8.2:3318826-3318845 | None:intergenic | 30.0% | |
| AGGTCAATATTAATCTCCAA+TGG | + | chr8.2:3316782-3316801 | None:intergenic | 30.0% | |
| ATATATGTCAGTGTCTATGT+CGG | + | chr8.2:3317674-3317693 | None:intergenic | 30.0% | |
| CGGACATAAAAAATAGTGAA+TGG | + | chr8.2:3318868-3318887 | None:intergenic | 30.0% | |
| CTCCATTAACATTTAGCATA+GGG | - | chr8.2:3318678-3318697 | MS.gene042248:CDS | 30.0% | |
| GAAAGCAAAAATAGAAGGAA+AGG | + | chr8.2:3318832-3318851 | None:intergenic | 30.0% | |
| GTATATGTTTCAGGGTTTAT+GGG | - | chr8.2:3317803-3317822 | MS.gene042248:intron | 30.0% | |
| TATATGTTTCAGGGTTTATG+GGG | - | chr8.2:3317804-3317823 | MS.gene042248:intron | 30.0% | |
| TATTTGTGTTCTTTCCAACA+GGG | + | chr8.2:3316637-3316656 | None:intergenic | 30.0% | |
| TCTCATCATGTTAATCTCAT+GGG | - | chr8.2:3316955-3316974 | MS.gene042248:intron | 30.0% | |
| TCTCCATTAACATTTAGCAT+AGG | - | chr8.2:3318677-3318696 | MS.gene042248:CDS | 30.0% | |
| TGTAAATGAAACTGCAACTT+TGG | + | chr8.2:3317364-3317383 | None:intergenic | 30.0% | |
| TGTATATGTTTCAGGGTTTA+TGG | - | chr8.2:3317802-3317821 | MS.gene042248:intron | 30.0% | |
| TTATTTGTGTTCTTTCCAAC+AGG | + | chr8.2:3316638-3316657 | None:intergenic | 30.0% | |
| TTCCCTATGCTAAATGTTAA+TGG | + | chr8.2:3318683-3318702 | None:intergenic | 30.0% | |
| TTTCTATAAGCTCTCTCATA+GGG | - | chr8.2:3318307-3318326 | MS.gene042248:intron | 30.0% | |
| ! | CTTGTATCAAGATTTTTGCT+TGG | - | chr8.2:3317420-3317439 | MS.gene042248:intron | 30.0% |
| ! | TTTGTATTTTGCAACATGGT+GGG | - | chr8.2:3316838-3316857 | MS.gene042248:CDS | 30.0% |
| !! | TAGTAGATTGGGTTGATAAT+AGG | - | chr8.2:3317598-3317617 | MS.gene042248:CDS | 30.0% |
| !!! | TTGGTTTGTATTTTGCAACA+TGG | - | chr8.2:3316834-3316853 | MS.gene042248:CDS | 30.0% |
| AAAAGAGTTTGCATGCTTAC+AGG | + | chr8.2:3317037-3317056 | None:intergenic | 35.0% | |
| AAGCTATCCTAAAGAGCTTA+TGG | - | chr8.2:3318245-3318264 | MS.gene042248:intron | 35.0% | |
| ACACTAACACTTCCAATTGA+AGG | - | chr8.2:3317636-3317655 | MS.gene042248:CDS | 35.0% | |
| ACTGTAAAACAGTTCGACTA+AGG | + | chr8.2:3318364-3318383 | None:intergenic | 35.0% | |
| AGAGTTTGATGAACCAAAGT+TGG | + | chr8.2:3316576-3316595 | None:intergenic | 35.0% | |
| AGATTCTTGCTTTCGAAGTA+CGG | - | chr8.2:3317250-3317269 | MS.gene042248:intron | 35.0% | |
| ATACAAAATTGGGACCAATC+TGG | + | chr8.2:3318018-3318037 | None:intergenic | 35.0% | |
| ATACCTAACACACCTTCAAT+TGG | + | chr8.2:3317651-3317670 | None:intergenic | 35.0% | |
| ATATGTTTCAGGGTTTATGG+GGG | - | chr8.2:3317805-3317824 | MS.gene042248:intron | 35.0% | |
| ATGAAAGGAATGTCTGTTAG+TGG | - | chr8.2:3317881-3317900 | MS.gene042248:intron | 35.0% | |
| ATGGGTAATGTGCATAGTTT+AGG | + | chr8.2:3316608-3316627 | None:intergenic | 35.0% | |
| CAATAATTGGCAGCAATGAA+AGG | + | chr8.2:3317470-3317489 | None:intergenic | 35.0% | |
| CTCATATCCATAAGCTCTTT+AGG | + | chr8.2:3318255-3318274 | None:intergenic | 35.0% | |
| CTCTCATCATGTTAATCTCA+TGG | - | chr8.2:3316954-3316973 | MS.gene042248:intron | 35.0% | |
| CTGTAAAACAGTTCGACTAA+GGG | + | chr8.2:3318363-3318382 | None:intergenic | 35.0% | |
| CTTTCATTGCTGCCAATTAT+TGG | - | chr8.2:3317468-3317487 | MS.gene042248:intron | 35.0% | |
| GAGAAGCAGTAGAGATAATA+TGG | + | chr8.2:3317930-3317949 | None:intergenic | 35.0% | |
| GAGATTAATATTGACCTACC+AGG | - | chr8.2:3316785-3316804 | MS.gene042248:CDS | 35.0% | |
| GTTCATCAAACTCTATTCCA+AGG | - | chr8.2:3316582-3316601 | MS.gene042248:intron | 35.0% | |
| GTTTCTATAAGCTCTCTCAT+AGG | - | chr8.2:3318306-3318325 | MS.gene042248:intron | 35.0% | |
| TACAAAATTGGGACCAATCT+GGG | + | chr8.2:3318017-3318036 | None:intergenic | 35.0% | |
| TCAGTGGATGATATGTAAAG+AGG | + | chr8.2:3316683-3316702 | None:intergenic | 35.0% | |
| TCATTACCCTTTACCAACTT+TGG | - | chr8.2:3316560-3316579 | MS.gene042248:intron | 35.0% | |
| TTCTCAAAGAAGGGAATGAA+AGG | - | chr8.2:3317866-3317885 | MS.gene042248:intron | 35.0% | |
| TTTCCAACAGGGTGAATAAT+GGG | + | chr8.2:3316626-3316645 | None:intergenic | 35.0% | |
| ! | GTTTGTATTTTGCAACATGG+TGG | - | chr8.2:3316837-3316856 | MS.gene042248:CDS | 35.0% |
| ! | TGAATGCTTTTCCTTATCCT+TGG | - | chr8.2:3316900-3316919 | MS.gene042248:CDS | 35.0% |
| ! | TGAGAAACTGAAGTTTTCAG+TGG | + | chr8.2:3316699-3316718 | None:intergenic | 35.0% |
| ! | TGTAAGCATGCAAACTCTTT+TGG | - | chr8.2:3317036-3317055 | MS.gene042248:intron | 35.0% |
| !! | AGATTGGTCCCAATTTTGTA+TGG | - | chr8.2:3318017-3318036 | MS.gene042248:CDS | 35.0% |
| !! | GATGAACCAAAGTTGGTAAA+GGG | + | chr8.2:3316569-3316588 | None:intergenic | 35.0% |
| !! | TGATGAACCAAAGTTGGTAA+AGG | + | chr8.2:3316570-3316589 | None:intergenic | 35.0% |
| !!! | GGGTAGTAATTTTTTCAGGT+GGG | - | chr8.2:3318589-3318608 | MS.gene042248:CDS | 35.0% |
| !!! | TGGGTAGTAATTTTTTCAGG+TGG | - | chr8.2:3318588-3318607 | MS.gene042248:CDS | 35.0% |
| AACAACCAAACTCACAAGGA+GGG | - | chr8.2:3316718-3316737 | MS.gene042248:intron | 40.0% | |
| AATGTGCATAGTTTAGGCCT+TGG | + | chr8.2:3316602-3316621 | None:intergenic | 40.0% | |
| AGTGCACAACCTCCAATAAT+TGG | + | chr8.2:3317483-3317502 | None:intergenic | 40.0% | |
| ATACTAGTGTGTGGAGATCA+TGG | - | chr8.2:3318427-3318446 | MS.gene042248:intron | 40.0% | |
| ATGATCTCCACACACTAGTA+TGG | + | chr8.2:3318428-3318447 | None:intergenic | 40.0% | |
| ATTTAAACTGCAGGTTGCAG+TGG | - | chr8.2:3317299-3317318 | MS.gene042248:intron | 40.0% | |
| CTTCCACAGCAATAGCAAAA+GGG | + | chr8.2:3317955-3317974 | None:intergenic | 40.0% | |
| CTTTCCAACAGGGTGAATAA+TGG | + | chr8.2:3316627-3316646 | None:intergenic | 40.0% | |
| GAACACGATGAAGAGAATCT+CGG | - | chr8.2:3318700-3318719 | MS.gene042248:CDS | 40.0% | |
| GAATGGGGAATTTAAACTGC+AGG | - | chr8.2:3317290-3317309 | MS.gene042248:intron | 40.0% | |
| GATACAAGAACACTGAAAGC+AGG | + | chr8.2:3317408-3317427 | None:intergenic | 40.0% | |
| GCAGCTCAGAAACTCAAAAT+TGG | - | chr8.2:3316815-3316834 | MS.gene042248:CDS | 40.0% | |
| GCAGTAGAGATAATATGGAG+AGG | + | chr8.2:3317925-3317944 | None:intergenic | 40.0% | |
| GTTTGAGAGAAGACAAAGAG+AGG | + | chr8.2:3316661-3316680 | None:intergenic | 40.0% | |
| TCATTGCTGCCAATTATTGG+AGG | - | chr8.2:3317471-3317490 | MS.gene042248:intron | 40.0% | |
| TCTCAACAACCAAACTCACA+AGG | - | chr8.2:3316714-3316733 | MS.gene042248:intron | 40.0% | |
| TGAGGCCCCTAAAGTTAATT+TGG | - | chr8.2:3316991-3317010 | MS.gene042248:intron | 40.0% | |
| TGCTTCTTCAAAAGGGTCTA+TGG | - | chr8.2:3318506-3318525 | MS.gene042248:CDS | 40.0% | |
| TTACCCATTATTCACCCTGT+TGG | - | chr8.2:3316620-3316639 | MS.gene042248:intron | 40.0% | |
| TTCCACAGCAATAGCAAAAG+GGG | + | chr8.2:3317954-3317973 | None:intergenic | 40.0% | |
| TTGCAGTGGCACATACAATT+GGG | - | chr8.2:3317313-3317332 | MS.gene042248:intron | 40.0% | |
| TTGCATGCTTACAGGAAACA+AGG | + | chr8.2:3317029-3317048 | None:intergenic | 40.0% | |
| ! | CTTCCAATTGAAGGTGTGTT+AGG | - | chr8.2:3317645-3317664 | MS.gene042248:CDS | 40.0% |
| ! | GTTAATCTCATGGGCTACTA+GGG | - | chr8.2:3316964-3316983 | MS.gene042248:intron | 40.0% |
| ! | TGTTAATCTCATGGGCTACT+AGG | - | chr8.2:3316963-3316982 | MS.gene042248:intron | 40.0% |
| AGGGTCTAACAAATGCACTG+TGG | - | chr8.2:3318326-3318345 | MS.gene042248:intron | 45.0% | |
| AGTTCGACTAAGGGTCTGTT+TGG | + | chr8.2:3318354-3318373 | None:intergenic | 45.0% | |
| AGTTTCCCTCCTTGTGAGTT+TGG | + | chr8.2:3316726-3316745 | None:intergenic | 45.0% | |
| ATGGACCTGTGAATAGAGGA+AGG | + | chr8.2:3318807-3318826 | None:intergenic | 45.0% | |
| ATTCAGCCAAACAATGCCCT+TGG | - | chr8.2:3318758-3318777 | MS.gene042248:CDS | 45.0% | |
| CAACAACCAAACTCACAAGG+AGG | - | chr8.2:3316717-3316736 | MS.gene042248:intron | 45.0% | |
| CCAATGTGGCCTTTGTGTTT+AGG | - | chr8.2:3317837-3317856 | MS.gene042248:intron | 45.0% | |
| CCTAAACACAAAGGCCACAT+TGG | + | chr8.2:3317840-3317859 | None:intergenic | 45.0% | |
| CCTTCCACAGCAATAGCAAA+AGG | + | chr8.2:3317956-3317975 | None:intergenic | 45.0% | |
| CTGTGACCTATCTGCTTCAT+AGG | + | chr8.2:3316759-3316778 | None:intergenic | 45.0% | |
| GACAAAGTGGAAGTAAGCCA+AGG | + | chr8.2:3316920-3316939 | None:intergenic | 45.0% | |
| GGGTCTAACAAATGCACTGT+GGG | - | chr8.2:3318327-3318346 | MS.gene042248:intron | 45.0% | |
| GTCATGCCTATGAAGCAGAT+AGG | - | chr8.2:3316750-3316769 | MS.gene042248:CDS | 45.0% | |
| GTGGAAGTAAGCCAAGGATA+AGG | + | chr8.2:3316914-3316933 | None:intergenic | 45.0% | |
| GTTGCAGTGGCACATACAAT+TGG | - | chr8.2:3317312-3317331 | MS.gene042248:intron | 45.0% | |
| TGACACTGATATGTCGACAC+TGG | + | chr8.2:3317733-3317752 | None:intergenic | 45.0% | |
| !! | AACATGGTGGGCTTTGAATG+TGG | - | chr8.2:3316850-3316869 | MS.gene042248:CDS | 45.0% |
| !! | AGGGCATTGTTTGGCTGAAT+TGG | + | chr8.2:3318758-3318777 | None:intergenic | 45.0% |
| !!! | CCTTTTGCTATTGCTGTGGA+AGG | - | chr8.2:3317953-3317972 | MS.gene042248:intron | 45.0% |
| AGCAGATAGGTCACAGCCAT+TGG | - | chr8.2:3316763-3316782 | MS.gene042248:CDS | 50.0% | |
| CAAACAGCAGTGTCCCAGAT+TGG | - | chr8.2:3318001-3318020 | MS.gene042248:intron | 50.0% | |
| GATGAGAGAACCAGCAGCAA+GGG | + | chr8.2:3316942-3316961 | None:intergenic | 50.0% | |
| GATTGCAATGGCAGCACCAA+GGG | + | chr8.2:3318777-3318796 | None:intergenic | 50.0% | |
| GCGCAAACCATACTAGTGTG+TGG | - | chr8.2:3318418-3318437 | MS.gene042248:intron | 50.0% | |
| GGGAATGGACCTGTGAATAG+AGG | + | chr8.2:3318811-3318830 | None:intergenic | 50.0% | |
| GGGGGCTATGATATCCAATG+TGG | - | chr8.2:3317823-3317842 | MS.gene042248:intron | 50.0% | |
| TGATGAGAGAACCAGCAGCA+AGG | + | chr8.2:3316943-3316962 | None:intergenic | 50.0% | |
| TGGCACCTTCCTCTATTCAC+AGG | - | chr8.2:3318799-3318818 | MS.gene042248:CDS | 50.0% | |
| TGTGGAAGGCCCAAAGATGT+GGG | - | chr8.2:3317967-3317986 | MS.gene042248:intron | 50.0% | |
| TTCTGAGCTGCTTGTTCACC+TGG | + | chr8.2:3316806-3316825 | None:intergenic | 50.0% | |
| !! | GAAGGTGCCAAGGATTGCAA+TGG | + | chr8.2:3318789-3318808 | None:intergenic | 50.0% |
| !! | GTGAATAGAGGAAGGTGCCA+AGG | + | chr8.2:3318799-3318818 | None:intergenic | 50.0% |
| !!! | CACCCCTTTTGCTATTGCTG+TGG | - | chr8.2:3317949-3317968 | MS.gene042248:intron | 50.0% |
| ACCAGCAGCAAGGGACAAAG+TGG | + | chr8.2:3316933-3316952 | None:intergenic | 55.0% | |
| AGCCAGCAGCCCACATCTTT+GGG | + | chr8.2:3317979-3317998 | None:intergenic | 55.0% | |
| CTGTGGAAGGCCCAAAGATG+TGG | - | chr8.2:3317966-3317985 | MS.gene042248:intron | 55.0% | |
| GAGCTGCTTGTTCACCTGGT+AGG | + | chr8.2:3316802-3316821 | None:intergenic | 55.0% | |
| GGATTGCAATGGCAGCACCA+AGG | + | chr8.2:3318778-3318797 | None:intergenic | 55.0% | |
| TCCACTTTGTCCCTTGCTGC+TGG | - | chr8.2:3316929-3316948 | MS.gene042248:intron | 55.0% | |
| ! | ATGGGCTACTAGGGTTGCTG+AGG | - | chr8.2:3316973-3316992 | MS.gene042248:intron | 55.0% |
| ! | GGTGCTGCCATTGCAATCCT+TGG | - | chr8.2:3318779-3318798 | MS.gene042248:CDS | 55.0% |
| !! | GCAGCACCAAGGGCATTGTT+TGG | + | chr8.2:3318767-3318786 | None:intergenic | 55.0% |
| CAGCCAGCAGCCCACATCTT+TGG | + | chr8.2:3317980-3317999 | None:intergenic | 60.0% | |
| ! | CAAAGATGTGGGCTGCTGGC+TGG | - | chr8.2:3317978-3317997 | MS.gene042248:intron | 60.0% |
| ! | GGCCCAAAGATGTGGGCTGC+TGG | - | chr8.2:3317974-3317993 | MS.gene042248:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 3316533 | 3319007 | 3316533 | ID=MS.gene042248 |
| chr8.2 | mRNA | 3316533 | 3319007 | 3316533 | ID=MS.gene042248.t1;Parent=MS.gene042248 |
| chr8.2 | exon | 3318504 | 3319007 | 3318504 | ID=MS.gene042248.t1.exon1;Parent=MS.gene042248.t1 |
| chr8.2 | CDS | 3318504 | 3319007 | 3318504 | ID=cds.MS.gene042248.t1;Parent=MS.gene042248.t1 |
| chr8.2 | exon | 3318003 | 3318228 | 3318003 | ID=MS.gene042248.t1.exon2;Parent=MS.gene042248.t1 |
| chr8.2 | CDS | 3318003 | 3318228 | 3318003 | ID=cds.MS.gene042248.t1;Parent=MS.gene042248.t1 |
| chr8.2 | exon | 3317502 | 3317724 | 3317502 | ID=MS.gene042248.t1.exon3;Parent=MS.gene042248.t1 |
| chr8.2 | CDS | 3317502 | 3317724 | 3317502 | ID=cds.MS.gene042248.t1;Parent=MS.gene042248.t1 |
| chr8.2 | exon | 3316720 | 3316933 | 3316720 | ID=MS.gene042248.t1.exon4;Parent=MS.gene042248.t1 |
| chr8.2 | CDS | 3316720 | 3316933 | 3316720 | ID=cds.MS.gene042248.t1;Parent=MS.gene042248.t1 |
| chr8.2 | exon | 3316533 | 3316544 | 3316533 | ID=MS.gene042248.t1.exon5;Parent=MS.gene042248.t1 |
| chr8.2 | CDS | 3316533 | 3316544 | 3316533 | ID=cds.MS.gene042248.t1;Parent=MS.gene042248.t1 |
| Gene Sequence |
| Protein sequence |
