Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene042249.t1 | XP_024638386.1 | 97.7 | 392 | 9 | 0 | 1 | 392 | 1 | 392 | 4.80E-212 | 746.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene042249.t1 | Q94B38 | 77.7 | 399 | 71 | 5 | 1 | 392 | 1 | 388 | 9.0e-167 | 587.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene042249.t1 | A0A396IJA1 | 97.7 | 392 | 9 | 0 | 1 | 392 | 1 | 392 | 3.5e-212 | 746.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene03172 | MS.gene042249 | PPI |
| MS.gene74587 | MS.gene042249 | PPI |
| MS.gene02045 | MS.gene042249 | PPI |
| MS.gene003243 | MS.gene042249 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene042249.t1 | MTR_4g131800 | 90.097 | 414 | 18 | 1 | 1 | 391 | 1 | 414 | 0.0 | 701 |
| MS.gene042249.t1 | MTR_2g022700 | 87.332 | 371 | 47 | 0 | 22 | 392 | 25 | 395 | 0.0 | 639 |
| MS.gene042249.t1 | MTR_3g049400 | 78.261 | 368 | 66 | 5 | 36 | 392 | 37 | 401 | 0.0 | 556 |
| MS.gene042249.t1 | MTR_2g029180 | 51.613 | 341 | 150 | 8 | 62 | 389 | 54 | 392 | 1.02e-98 | 300 |
| MS.gene042249.t1 | MTR_4g088350 | 44.781 | 297 | 155 | 4 | 99 | 391 | 97 | 388 | 5.07e-81 | 254 |
| MS.gene042249.t1 | MTR_5g044220 | 41.159 | 328 | 174 | 5 | 75 | 391 | 74 | 393 | 5.88e-78 | 246 |
| MS.gene042249.t1 | MTR_6g005480 | 46.774 | 310 | 154 | 5 | 92 | 392 | 101 | 408 | 1.10e-75 | 241 |
| MS.gene042249.t1 | MTR_4g105630 | 41.946 | 298 | 170 | 2 | 97 | 392 | 81 | 377 | 6.06e-72 | 230 |
| MS.gene042249.t1 | MTR_4g105630 | 40.893 | 291 | 169 | 2 | 97 | 385 | 81 | 370 | 4.87e-67 | 217 |
| MS.gene042249.t1 | MTR_3g077640 | 41.049 | 324 | 181 | 4 | 78 | 392 | 80 | 402 | 5.89e-67 | 218 |
| MS.gene042249.t1 | MTR_4g088350 | 42.910 | 268 | 144 | 4 | 128 | 391 | 15 | 277 | 6.20e-66 | 211 |
| MS.gene042249.t1 | MTR_4g105630 | 38.174 | 241 | 146 | 2 | 97 | 335 | 81 | 320 | 3.66e-46 | 162 |
| MS.gene042249.t1 | MTR_4g105630 | 40.000 | 215 | 127 | 1 | 97 | 309 | 81 | 295 | 7.60e-44 | 155 |
| MS.gene042249.t1 | MTR_1g030320 | 26.557 | 305 | 185 | 7 | 108 | 392 | 21 | 306 | 6.73e-24 | 101 |
| MS.gene042249.t1 | MTR_3g072380 | 26.230 | 305 | 186 | 7 | 108 | 392 | 22 | 307 | 3.83e-23 | 99.4 |
| MS.gene042249.t1 | MTR_3g072380 | 30.357 | 168 | 107 | 3 | 108 | 268 | 22 | 186 | 6.23e-17 | 80.1 |
| MS.gene042249.t1 | MTR_3g070000 | 22.531 | 324 | 228 | 11 | 84 | 392 | 4 | 319 | 1.43e-16 | 80.5 |
| MS.gene042249.t1 | MTR_5g081710 | 22.727 | 308 | 224 | 9 | 93 | 392 | 2 | 303 | 4.93e-15 | 75.5 |
| MS.gene042249.t1 | MTR_3g462070 | 21.918 | 292 | 217 | 6 | 108 | 392 | 17 | 304 | 1.82e-14 | 73.9 |
| MS.gene042249.t1 | MTR_4g018760 | 22.526 | 293 | 216 | 6 | 107 | 392 | 19 | 307 | 2.50e-13 | 70.5 |
| MS.gene042249.t1 | MTR_4g101860 | 21.839 | 348 | 241 | 8 | 67 | 392 | 9 | 347 | 3.81e-12 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene042249.t1 | AT1G61800 | 82.500 | 360 | 50 | 2 | 38 | 392 | 37 | 388 | 0.0 | 591 |
| MS.gene042249.t1 | AT1G61800 | 81.667 | 360 | 53 | 2 | 38 | 392 | 37 | 388 | 0.0 | 585 |
| MS.gene042249.t1 | AT5G54800 | 79.539 | 347 | 60 | 2 | 49 | 391 | 48 | 387 | 0.0 | 544 |
| MS.gene042249.t1 | AT5G17630 | 50.136 | 367 | 167 | 9 | 34 | 390 | 42 | 402 | 2.06e-112 | 335 |
| MS.gene042249.t1 | AT4G03950 | 56.997 | 293 | 69 | 6 | 101 | 392 | 18 | 254 | 2.64e-92 | 279 |
| MS.gene042249.t1 | AT5G46110 | 38.211 | 369 | 204 | 6 | 33 | 391 | 43 | 397 | 9.02e-81 | 254 |
| MS.gene042249.t1 | AT5G46110 | 38.211 | 369 | 204 | 6 | 33 | 391 | 43 | 397 | 9.49e-81 | 254 |
| MS.gene042249.t1 | AT5G46110 | 44.444 | 288 | 151 | 4 | 108 | 391 | 2 | 284 | 1.05e-79 | 247 |
| MS.gene042249.t1 | AT5G46110 | 37.127 | 369 | 197 | 7 | 33 | 391 | 43 | 386 | 1.20e-75 | 240 |
| MS.gene042249.t1 | AT3G01550 | 42.345 | 307 | 174 | 2 | 89 | 392 | 67 | 373 | 1.52e-68 | 221 |
| MS.gene042249.t1 | AT3G01550 | 41.368 | 307 | 172 | 3 | 89 | 392 | 67 | 368 | 1.99e-64 | 210 |
| MS.gene042249.t1 | AT5G33320 | 38.650 | 326 | 191 | 3 | 74 | 391 | 75 | 399 | 5.83e-63 | 207 |
| MS.gene042249.t1 | AT1G77610 | 25.503 | 298 | 197 | 5 | 108 | 392 | 16 | 301 | 2.46e-23 | 100 |
| MS.gene042249.t1 | AT1G21870 | 25.503 | 298 | 197 | 6 | 108 | 392 | 22 | 307 | 9.72e-23 | 98.6 |
| MS.gene042249.t1 | AT5G05820 | 24.000 | 300 | 214 | 9 | 101 | 392 | 12 | 305 | 6.00e-18 | 84.3 |
| MS.gene042249.t1 | AT3G11320 | 23.333 | 300 | 216 | 9 | 101 | 392 | 12 | 305 | 3.32e-16 | 79.0 |
| MS.gene042249.t1 | AT1G12500 | 23.729 | 295 | 212 | 7 | 106 | 392 | 64 | 353 | 4.69e-14 | 73.2 |
Find 98 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTATATGTTTCAGGGTTTA+TGG | 0.101964 | 8.2:-3359658 | MS.gene042249:intron |
| CTTTCATTGCTGCCAATTAT+TGG | 0.180449 | 8.2:-3359992 | MS.gene042249:CDS |
| TTAAGCTTACCATACAAAAT+TGG | 0.184444 | 8.2:+3359434 | None:intergenic |
| GAGAAGCAGTAGAGATAATA+TGG | 0.194779 | 8.2:+3359533 | None:intergenic |
| CAGCCAGCAGCCCACATCTT+TGG | 0.196761 | 8.2:+3359483 | None:intergenic |
| TTCCCTATGCTAAATGTTAA+TGG | 0.247165 | 8.2:+3358780 | None:intergenic |
| TGAGGCCCCTAAAGTTAATT+TGG | 0.255186 | 8.2:-3360469 | MS.gene042249:CDS |
| CCAATGTGGCCTTTGTGTTT+AGG | 0.259810 | 8.2:-3359623 | MS.gene042249:CDS |
| AGCCAGCAGCCCACATCTTT+GGG | 0.269548 | 8.2:+3359484 | None:intergenic |
| AGTTTCCCTCCTTGTGAGTT+TGG | 0.275392 | 8.2:+3360737 | None:intergenic |
| GCAGCTCAGAAACTCAAAAT+TGG | 0.310246 | 8.2:-3360645 | MS.gene042249:CDS |
| AGGGCATTGTTTGGCTGAAT+TGG | 0.315373 | 8.2:+3358705 | None:intergenic |
| CTTTCCAACAGGGTGAATAA+TGG | 0.322181 | 8.2:+3360836 | None:intergenic |
| GTATATGTTTCAGGGTTTAT+GGG | 0.323201 | 8.2:-3359657 | MS.gene042249:intron |
| CTAAAATACACATTACTGTT+TGG | 0.328456 | 8.2:+3358463 | None:intergenic |
| AGTGCACAACCTCCAATAAT+TGG | 0.333090 | 8.2:+3359980 | None:intergenic |
| TGTTAATCTCATGGGCTACT+AGG | 0.338741 | 8.2:-3360497 | MS.gene042249:CDS |
| TTATTTGTGTTCTTTCCAAC+AGG | 0.349705 | 8.2:+3360825 | None:intergenic |
| GAACTTAATTTCAATATGAT+TGG | 0.357019 | 8.2:-3359944 | MS.gene042249:intron |
| TGTAAATGAAACTGCAACTT+TGG | 0.364668 | 8.2:+3360099 | None:intergenic |
| TTTCCAACAGGGTGAATAAT+GGG | 0.368520 | 8.2:+3360837 | None:intergenic |
| CTGTGACCTATCTGCTTCAT+AGG | 0.377418 | 8.2:+3360704 | None:intergenic |
| TCCACTTTGTCCCTTGCTGC+TGG | 0.380408 | 8.2:-3360531 | MS.gene042249:CDS |
| TAAGCTTACCATACAAAATT+GGG | 0.391221 | 8.2:+3359435 | None:intergenic |
| GTTGCAGTGGCACATACAAT+TGG | 0.392389 | 8.2:-3360148 | MS.gene042249:CDS |
| TTCTGAGCTGCTTGTTCACC+TGG | 0.392509 | 8.2:+3360657 | None:intergenic |
| GGTGCTGCCATTGCAATCCT+TGG | 0.398279 | 8.2:-3358681 | MS.gene042249:CDS |
| CTCTCATCATGTTAATCTCA+TGG | 0.398591 | 8.2:-3360506 | MS.gene042249:CDS |
| TCATTACCCTTTACCAACTT+TGG | 0.400604 | 8.2:-3360900 | MS.gene042249:CDS |
| GGCCCAAAGATGTGGGCTGC+TGG | 0.405747 | 8.2:-3359486 | MS.gene042249:CDS |
| TAGGAATATATTCTCAAAGA+AGG | 0.412057 | 8.2:-3359604 | MS.gene042249:CDS |
| CAAAGATGTGGGCTGCTGGC+TGG | 0.414219 | 8.2:-3359482 | MS.gene042249:CDS |
| ATGGGTAATGTGCATAGTTT+AGG | 0.414988 | 8.2:+3360855 | None:intergenic |
| GATGAACCAAAGTTGGTAAA+GGG | 0.421343 | 8.2:+3360894 | None:intergenic |
| GCAGCACCAAGGGCATTGTT+TGG | 0.422130 | 8.2:+3358696 | None:intergenic |
| TACAAAATTGGGACCAATCT+GGG | 0.424232 | 8.2:+3359446 | None:intergenic |
| ATACAAAATTGGGACCAATC+TGG | 0.428493 | 8.2:+3359445 | None:intergenic |
| CTCCATTAACATTTAGCATA+GGG | 0.437899 | 8.2:-3358782 | MS.gene042249:CDS |
| CCTTCCACAGCAATAGCAAA+AGG | 0.450440 | 8.2:+3359507 | None:intergenic |
| AATGTGCATAGTTTAGGCCT+TGG | 0.452348 | 8.2:+3360861 | None:intergenic |
| ATGAAAGGTAAACTTGTAAA+GGG | 0.453481 | 8.2:+3360008 | None:intergenic |
| AATGAAAGGTAAACTTGTAA+AGG | 0.460416 | 8.2:+3360007 | None:intergenic |
| TGATGAACCAAAGTTGGTAA+AGG | 0.462222 | 8.2:+3360893 | None:intergenic |
| TCATTGCTGCCAATTATTGG+AGG | 0.465645 | 8.2:-3359989 | MS.gene042249:CDS |
| TATATGTTTCAGGGTTTATG+GGG | 0.470350 | 8.2:-3359656 | MS.gene042249:intron |
| TTACCCATTATTCACCCTGT+TGG | 0.474011 | 8.2:-3360840 | MS.gene042249:CDS |
| TTTACACACATAATCAAAAG+TGG | 0.474109 | 8.2:-3360082 | MS.gene042249:CDS |
| AGCAGATAGGTCACAGCCAT+TGG | 0.485312 | 8.2:-3360697 | MS.gene042249:CDS |
| TTTCAATATTTACAACAAGA+AGG | 0.489567 | 8.2:-3360586 | MS.gene042249:CDS |
| GTTAATCTCATGGGCTACTA+GGG | 0.492852 | 8.2:-3360496 | MS.gene042249:CDS |
| AGAGTTTGATGAACCAAAGT+TGG | 0.496961 | 8.2:+3360887 | None:intergenic |
| GTGGAAGTAAGCCAAGGATA+AGG | 0.497515 | 8.2:+3360549 | None:intergenic |
| TGGCACCTTCCTCTATTCAC+AGG | 0.498982 | 8.2:-3358661 | MS.gene042249:intron |
| ATGAAAGGAATGTCTGTTAG+TGG | 0.500986 | 8.2:-3359579 | MS.gene042249:CDS |
| TTGCAGTGGCACATACAATT+GGG | 0.501192 | 8.2:-3360147 | MS.gene042249:CDS |
| TCTCCATTAACATTTAGCAT+AGG | 0.504196 | 8.2:-3358783 | MS.gene042249:CDS |
| GGGAATGGACCTGTGAATAG+AGG | 0.507084 | 8.2:+3358652 | None:intergenic |
| CTTCCACAGCAATAGCAAAA+GGG | 0.507964 | 8.2:+3359508 | None:intergenic |
| TCAGTGGATGATATGTAAAG+AGG | 0.515667 | 8.2:+3360780 | None:intergenic |
| GAGCTGCTTGTTCACCTGGT+AGG | 0.516916 | 8.2:+3360661 | None:intergenic |
| GTTCATCAAACTCTATTCCA+AGG | 0.531276 | 8.2:-3360878 | MS.gene042249:CDS |
| CAAACAGCAGTGTCCCAGAT+TGG | 0.535343 | 8.2:-3359459 | MS.gene042249:CDS |
| TTCTCAAAGAAGGGAATGAA+AGG | 0.535780 | 8.2:-3359594 | MS.gene042249:CDS |
| ACCAGCAGCAAGGGACAAAG+TGG | 0.537499 | 8.2:+3360530 | None:intergenic |
| AGGAATATATTCTCAAAGAA+GGG | 0.541673 | 8.2:-3359603 | MS.gene042249:CDS |
| CCTAAACACAAAGGCCACAT+TGG | 0.548843 | 8.2:+3359623 | None:intergenic |
| CAATAATTGGCAGCAATGAA+AGG | 0.550796 | 8.2:+3359993 | None:intergenic |
| ATTCAGCCAAACAATGCCCT+TGG | 0.558227 | 8.2:-3358702 | MS.gene042249:CDS |
| TCTCATCATGTTAATCTCAT+GGG | 0.562801 | 8.2:-3360505 | MS.gene042249:CDS |
| GTTTGAGAGAAGACAAAGAG+AGG | 0.565693 | 8.2:+3360802 | None:intergenic |
| AAAATCCAAATTAACTTTAG+GGG | 0.568648 | 8.2:+3360464 | None:intergenic |
| GATGAGAGAACCAGCAGCAA+GGG | 0.572112 | 8.2:+3360521 | None:intergenic |
| ATTTAAACTGCAGGTTGCAG+TGG | 0.576270 | 8.2:-3360161 | MS.gene042249:intron |
| ATGGGCTACTAGGGTTGCTG+AGG | 0.583408 | 8.2:-3360487 | MS.gene042249:CDS |
| AGGTCAATATTAATCTCCAA+TGG | 0.584548 | 8.2:+3360681 | None:intergenic |
| AACATGGTGGGCTTTGAATG+TGG | 0.587072 | 8.2:-3360610 | MS.gene042249:CDS |
| GATTGCAATGGCAGCACCAA+GGG | 0.590233 | 8.2:+3358686 | None:intergenic |
| GATACAAGAACACTGAAAGC+AGG | 0.598642 | 8.2:+3360055 | None:intergenic |
| TTGCATGCTTACAGGAAACA+AGG | 0.604931 | 8.2:+3360434 | None:intergenic |
| CTGTGGAAGGCCCAAAGATG+TGG | 0.607847 | 8.2:-3359494 | MS.gene042249:CDS |
| GTGAATAGAGGAAGGTGCCA+AGG | 0.609003 | 8.2:+3358664 | None:intergenic |
| TTCCACAGCAATAGCAAAAG+GGG | 0.609710 | 8.2:+3359509 | None:intergenic |
| GTCATGCCTATGAAGCAGAT+AGG | 0.618296 | 8.2:-3360710 | MS.gene042249:CDS |
| AACAACCAAACTCACAAGGA+GGG | 0.622699 | 8.2:-3360742 | MS.gene042249:CDS |
| ATATGTTTCAGGGTTTATGG+GGG | 0.623221 | 8.2:-3359655 | MS.gene042249:intron |
| TGATGAGAGAACCAGCAGCA+AGG | 0.629327 | 8.2:+3360520 | None:intergenic |
| GACAAAGTGGAAGTAAGCCA+AGG | 0.631812 | 8.2:+3360543 | None:intergenic |
| GAAGGTGCCAAGGATTGCAA+TGG | 0.634289 | 8.2:+3358674 | None:intergenic |
| GAACACGATGAAGAGAATCT+CGG | 0.638378 | 8.2:-3358760 | MS.gene042249:CDS |
| ATGGACCTGTGAATAGAGGA+AGG | 0.642169 | 8.2:+3358656 | None:intergenic |
| GAGATTAATATTGACCTACC+AGG | 0.648457 | 8.2:-3360675 | MS.gene042249:CDS |
| GGATTGCAATGGCAGCACCA+AGG | 0.661338 | 8.2:+3358685 | None:intergenic |
| TATTTGTGTTCTTTCCAACA+GGG | 0.663249 | 8.2:+3360826 | None:intergenic |
| GCAGTAGAGATAATATGGAG+AGG | 0.668394 | 8.2:+3359538 | None:intergenic |
| TGTGGAAGGCCCAAAGATGT+GGG | 0.679025 | 8.2:-3359493 | MS.gene042249:CDS |
| GAATATATTCCTAAACACAA+AGG | 0.680902 | 8.2:+3359614 | None:intergenic |
| CAACAACCAAACTCACAAGG+AGG | 0.683879 | 8.2:-3360743 | MS.gene042249:CDS |
| TCTCAACAACCAAACTCACA+AGG | 0.695316 | 8.2:-3360746 | MS.gene042249:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATCCAAATTAACTTTA+GGG | + | chr8.2:3358942-3358961 | None:intergenic | 15.0% |
| !! | AAGCAATAAAATTAAGAAAA+AGG | + | chr8.2:3359007-3359026 | None:intergenic | 15.0% |
| !! | ACATGTATATATAAAATGAA+CGG | + | chr8.2:3360830-3360849 | None:intergenic | 15.0% |
| !!! | AAAATTGATTTTGAATGAAT+TGG | - | chr8.2:3359116-3359135 | MS.gene042249:intron | 15.0% |
| !!! | TACATAAAAACTTTTATGAT+TGG | + | chr8.2:3360099-3360118 | None:intergenic | 15.0% |
| !!! | TTTCTTTTTATTTATTTCAC+AGG | - | chr8.2:3360916-3360935 | MS.gene042249:CDS | 15.0% |
| !! | AAAAGACCTTAGAAATATAA+TGG | + | chr8.2:3360036-3360055 | None:intergenic | 20.0% |
| !! | AAAATCCAAATTAACTTTAG+GGG | + | chr8.2:3358941-3358960 | None:intergenic | 20.0% |
| !! | AATAAGAAAGCAAAAATAGA+AGG | + | chr8.2:3360779-3360798 | None:intergenic | 20.0% |
| !! | ACTATATTCACTTATTTACA+TGG | - | chr8.2:3359485-3359504 | MS.gene042249:CDS | 20.0% |
| !! | CAAAAATCCAAATTAACTTT+AGG | + | chr8.2:3358943-3358962 | None:intergenic | 20.0% |
| !! | GAACTTAATTTCAATATGAT+TGG | - | chr8.2:3359458-3359477 | MS.gene042249:CDS | 20.0% |
| !! | TTTCAATATTTACAACAAGA+AGG | - | chr8.2:3358816-3358835 | MS.gene042249:CDS | 20.0% |
| !!! | AATATTGATTTAGTACTGAA+TGG | - | chr8.2:3359215-3359234 | MS.gene042249:intron | 20.0% |
| !!! | ATATTGATTTAGTACTGAAT+GGG | - | chr8.2:3359216-3359235 | MS.gene042249:intron | 20.0% |
| !!! | CTAAAGTTAATTTGGATTTT+TGG | - | chr8.2:3358941-3358960 | MS.gene042249:intron | 20.0% |
| !!! | TCATATCCATTATATTTCTA+AGG | - | chr8.2:3360027-3360046 | MS.gene042249:CDS | 20.0% |
| ! | AAAGCAAAAATAGAAGGAAA+GGG | + | chr8.2:3360773-3360792 | None:intergenic | 25.0% |
| ! | AATGAAAGGTAAACTTGTAA+AGG | + | chr8.2:3359398-3359417 | None:intergenic | 25.0% |
| ! | AGGAATATATTCTCAAAGAA+GGG | - | chr8.2:3359799-3359818 | MS.gene042249:intron | 25.0% |
| ! | ATATGTCTTGTATATGTTTC+AGG | - | chr8.2:3359736-3359755 | MS.gene042249:intron | 25.0% |
| ! | ATGAAAGGTAAACTTGTAAA+GGG | + | chr8.2:3359397-3359416 | None:intergenic | 25.0% |
| ! | ATGAAATAGTACACAACAAT+GGG | + | chr8.2:3360011-3360030 | None:intergenic | 25.0% |
| ! | ATGTTCTGTTTATAGTAGAT+TGG | - | chr8.2:3359528-3359547 | MS.gene042249:CDS | 25.0% |
| ! | ATTATCAATATTCATGGTCA+AGG | + | chr8.2:3360429-3360448 | None:intergenic | 25.0% |
| ! | CATTTGACTAATGAACTTAT+GGG | - | chr8.2:3360511-3360530 | MS.gene042249:CDS | 25.0% |
| ! | GAATATATTCCTAAACACAA+AGG | + | chr8.2:3359791-3359810 | None:intergenic | 25.0% |
| ! | TAAGCTTACCATACAAAATT+GGG | + | chr8.2:3359970-3359989 | None:intergenic | 25.0% |
| ! | TAGGAATATATTCTCAAAGA+AGG | - | chr8.2:3359798-3359817 | MS.gene042249:intron | 25.0% |
| ! | TATGAAATAGTACACAACAA+TGG | + | chr8.2:3360012-3360031 | None:intergenic | 25.0% |
| ! | TATGTCTTGTATATGTTTCA+GGG | - | chr8.2:3359737-3359756 | MS.gene042249:intron | 25.0% |
| ! | TATTCACTTATTTACATGGT+TGG | - | chr8.2:3359489-3359508 | MS.gene042249:CDS | 25.0% |
| ! | TCATTTGACTAATGAACTTA+TGG | - | chr8.2:3360510-3360529 | MS.gene042249:CDS | 25.0% |
| ! | TGTTCTGTTTATAGTAGATT+GGG | - | chr8.2:3359529-3359548 | MS.gene042249:CDS | 25.0% |
| ! | TTAAGCTTACCATACAAAAT+TGG | + | chr8.2:3359971-3359990 | None:intergenic | 25.0% |
| ! | TTTACACACATAATCAAAAG+TGG | - | chr8.2:3359320-3359339 | MS.gene042249:intron | 25.0% |
| !! | TAATTTTATTGTTGACACAC+AGG | + | chr8.2:3360860-3360879 | None:intergenic | 25.0% |
| !!! | AATTCTGAAGTCAAAATTAC+AGG | - | chr8.2:3359158-3359177 | MS.gene042249:intron | 25.0% |
| !!! | AGAAGCATTATCAATATTCA+TGG | + | chr8.2:3360435-3360454 | None:intergenic | 25.0% |
| !!! | AGTTAATTTGGATTTTTGGA+AGG | - | chr8.2:3358945-3358964 | MS.gene042249:intron | 25.0% |
| !!! | ATATTTCTAAGGTCTTTTTG+TGG | - | chr8.2:3360038-3360057 | MS.gene042249:CDS | 25.0% |
| !!! | ATTGATAATGCTTCTTCAAA+AGG | - | chr8.2:3360440-3360459 | MS.gene042249:intron | 25.0% |
| !!! | TATTGATTTAGTACTGAATG+GGG | - | chr8.2:3359217-3359236 | MS.gene042249:intron | 25.0% |
| !!! | TTATGGGTAGTAATTTTTTC+AGG | - | chr8.2:3360527-3360546 | MS.gene042249:CDS | 25.0% |
| !!! | TTATTTACATGGTTGGTTTT+CGG | - | chr8.2:3359496-3359515 | MS.gene042249:CDS | 25.0% |
| !!! | TTGATAATGCTTCTTCAAAA+GGG | - | chr8.2:3360441-3360460 | MS.gene042249:intron | 25.0% |
| AAAAATAGAAGGAAAGGGAA+TGG | + | chr8.2:3360768-3360787 | None:intergenic | 30.0% | |
| AGGTCAATATTAATCTCCAA+TGG | + | chr8.2:3358724-3358743 | None:intergenic | 30.0% | |
| ATATATGTCAGTGTCTATGT+CGG | + | chr8.2:3359616-3359635 | None:intergenic | 30.0% | |
| CGGACATAAAAAATAGTGAA+TGG | + | chr8.2:3360810-3360829 | None:intergenic | 30.0% | |
| CTCCATTAACATTTAGCATA+GGG | - | chr8.2:3360620-3360639 | MS.gene042249:CDS | 30.0% | |
| GAAAGCAAAAATAGAAGGAA+AGG | + | chr8.2:3360774-3360793 | None:intergenic | 30.0% | |
| GTATATGTTTCAGGGTTTAT+GGG | - | chr8.2:3359745-3359764 | MS.gene042249:intron | 30.0% | |
| TATATGTTTCAGGGTTTATG+GGG | - | chr8.2:3359746-3359765 | MS.gene042249:intron | 30.0% | |
| TATTTGTGTTCTTTCCAACA+GGG | + | chr8.2:3358579-3358598 | None:intergenic | 30.0% | |
| TCTCATCATGTTAATCTCAT+GGG | - | chr8.2:3358897-3358916 | MS.gene042249:intron | 30.0% | |
| TCTCCATTAACATTTAGCAT+AGG | - | chr8.2:3360619-3360638 | MS.gene042249:CDS | 30.0% | |
| TGTAAATGAAACTGCAACTT+TGG | + | chr8.2:3359306-3359325 | None:intergenic | 30.0% | |
| TGTATATGTTTCAGGGTTTA+TGG | - | chr8.2:3359744-3359763 | MS.gene042249:intron | 30.0% | |
| TTATTTGTGTTCTTTCCAAC+AGG | + | chr8.2:3358580-3358599 | None:intergenic | 30.0% | |
| TTCCCTATGCTAAATGTTAA+TGG | + | chr8.2:3360625-3360644 | None:intergenic | 30.0% | |
| TTTCTATAAGCTCTCTCATA+GGG | - | chr8.2:3360249-3360268 | MS.gene042249:intron | 30.0% | |
| ! | CTTGTATCAAGATTTTTGCT+TGG | - | chr8.2:3359362-3359381 | MS.gene042249:intron | 30.0% |
| ! | TTTGTATTTTGCAACATGGT+GGG | - | chr8.2:3358780-3358799 | MS.gene042249:CDS | 30.0% |
| !! | TAGTAGATTGGGTTGATAAT+AGG | - | chr8.2:3359540-3359559 | MS.gene042249:CDS | 30.0% |
| !!! | TTGGTTTGTATTTTGCAACA+TGG | - | chr8.2:3358776-3358795 | MS.gene042249:CDS | 30.0% |
| AAAAGAGTTTGCATGCTTAC+AGG | + | chr8.2:3358979-3358998 | None:intergenic | 35.0% | |
| AAGCTATCCTAAAGAGCTTA+TGG | - | chr8.2:3360187-3360206 | MS.gene042249:intron | 35.0% | |
| ACACTAACACTTCCAATTGA+AGG | - | chr8.2:3359578-3359597 | MS.gene042249:CDS | 35.0% | |
| ACTGTAAAACAGTTCGACTA+AGG | + | chr8.2:3360306-3360325 | None:intergenic | 35.0% | |
| AGAGTTTGATGAACCAAAGT+TGG | + | chr8.2:3358518-3358537 | None:intergenic | 35.0% | |
| AGATTCTTGCTTTCGAAGTA+CGG | - | chr8.2:3359192-3359211 | MS.gene042249:intron | 35.0% | |
| ATACAAAATTGGGACCAATC+TGG | + | chr8.2:3359960-3359979 | None:intergenic | 35.0% | |
| ATACCTAACACACCTTCAAT+TGG | + | chr8.2:3359593-3359612 | None:intergenic | 35.0% | |
| ATATGTTTCAGGGTTTATGG+GGG | - | chr8.2:3359747-3359766 | MS.gene042249:intron | 35.0% | |
| ATGAAAGGAATGTCTGTTAG+TGG | - | chr8.2:3359823-3359842 | MS.gene042249:intron | 35.0% | |
| ATGGGTAATGTGCATAGTTT+AGG | + | chr8.2:3358550-3358569 | None:intergenic | 35.0% | |
| CAATAATTGGCAGCAATGAA+AGG | + | chr8.2:3359412-3359431 | None:intergenic | 35.0% | |
| CTCATATCCATAAGCTCTTT+AGG | + | chr8.2:3360197-3360216 | None:intergenic | 35.0% | |
| CTCTCATCATGTTAATCTCA+TGG | - | chr8.2:3358896-3358915 | MS.gene042249:intron | 35.0% | |
| CTGTAAAACAGTTCGACTAA+GGG | + | chr8.2:3360305-3360324 | None:intergenic | 35.0% | |
| CTTTCATTGCTGCCAATTAT+TGG | - | chr8.2:3359410-3359429 | MS.gene042249:intron | 35.0% | |
| GAGAAGCAGTAGAGATAATA+TGG | + | chr8.2:3359872-3359891 | None:intergenic | 35.0% | |
| GAGATTAATATTGACCTACC+AGG | - | chr8.2:3358727-3358746 | MS.gene042249:CDS | 35.0% | |
| GTTCATCAAACTCTATTCCA+AGG | - | chr8.2:3358524-3358543 | MS.gene042249:intron | 35.0% | |
| GTTTCTATAAGCTCTCTCAT+AGG | - | chr8.2:3360248-3360267 | MS.gene042249:intron | 35.0% | |
| TACAAAATTGGGACCAATCT+GGG | + | chr8.2:3359959-3359978 | None:intergenic | 35.0% | |
| TCAGTGGATGATATGTAAAG+AGG | + | chr8.2:3358625-3358644 | None:intergenic | 35.0% | |
| TCATTACCCTTTACCAACTT+TGG | - | chr8.2:3358502-3358521 | MS.gene042249:intron | 35.0% | |
| TTCTCAAAGAAGGGAATGAA+AGG | - | chr8.2:3359808-3359827 | MS.gene042249:intron | 35.0% | |
| TTTCCAACAGGGTGAATAAT+GGG | + | chr8.2:3358568-3358587 | None:intergenic | 35.0% | |
| ! | GTTTGTATTTTGCAACATGG+TGG | - | chr8.2:3358779-3358798 | MS.gene042249:CDS | 35.0% |
| ! | TGAATGCTTTTCCTTATCCT+TGG | - | chr8.2:3358842-3358861 | MS.gene042249:CDS | 35.0% |
| ! | TGAGAAACTGAAGTTTTCAG+TGG | + | chr8.2:3358641-3358660 | None:intergenic | 35.0% |
| ! | TGTAAGCATGCAAACTCTTT+TGG | - | chr8.2:3358978-3358997 | MS.gene042249:intron | 35.0% |
| !! | AGATTGGTCCCAATTTTGTA+TGG | - | chr8.2:3359959-3359978 | MS.gene042249:CDS | 35.0% |
| !! | GATGAACCAAAGTTGGTAAA+GGG | + | chr8.2:3358511-3358530 | None:intergenic | 35.0% |
| !! | TGATGAACCAAAGTTGGTAA+AGG | + | chr8.2:3358512-3358531 | None:intergenic | 35.0% |
| !!! | GGGTAGTAATTTTTTCAGGT+GGG | - | chr8.2:3360531-3360550 | MS.gene042249:CDS | 35.0% |
| !!! | TGGGTAGTAATTTTTTCAGG+TGG | - | chr8.2:3360530-3360549 | MS.gene042249:CDS | 35.0% |
| AACAACCAAACTCACAAGGA+GGG | - | chr8.2:3358660-3358679 | MS.gene042249:intron | 40.0% | |
| AATGTGCATAGTTTAGGCCT+TGG | + | chr8.2:3358544-3358563 | None:intergenic | 40.0% | |
| AGTGCACAACCTCCAATAAT+TGG | + | chr8.2:3359425-3359444 | None:intergenic | 40.0% | |
| ATACTAGTGTGTGGAGATCA+TGG | - | chr8.2:3360369-3360388 | MS.gene042249:intron | 40.0% | |
| ATGATCTCCACACACTAGTA+TGG | + | chr8.2:3360370-3360389 | None:intergenic | 40.0% | |
| ATTTAAACTGCAGGTTGCAG+TGG | - | chr8.2:3359241-3359260 | MS.gene042249:intron | 40.0% | |
| CTTCCACAGCAATAGCAAAA+GGG | + | chr8.2:3359897-3359916 | None:intergenic | 40.0% | |
| CTTTCCAACAGGGTGAATAA+TGG | + | chr8.2:3358569-3358588 | None:intergenic | 40.0% | |
| GAACACGATGAAGAGAATCT+CGG | - | chr8.2:3360642-3360661 | MS.gene042249:CDS | 40.0% | |
| GAATGGGGAATTTAAACTGC+AGG | - | chr8.2:3359232-3359251 | MS.gene042249:intron | 40.0% | |
| GATACAAGAACACTGAAAGC+AGG | + | chr8.2:3359350-3359369 | None:intergenic | 40.0% | |
| GCAGCTCAGAAACTCAAAAT+TGG | - | chr8.2:3358757-3358776 | MS.gene042249:CDS | 40.0% | |
| GCAGTAGAGATAATATGGAG+AGG | + | chr8.2:3359867-3359886 | None:intergenic | 40.0% | |
| GTTTGAGAGAAGACAAAGAG+AGG | + | chr8.2:3358603-3358622 | None:intergenic | 40.0% | |
| TCATTGCTGCCAATTATTGG+AGG | - | chr8.2:3359413-3359432 | MS.gene042249:intron | 40.0% | |
| TCTCAACAACCAAACTCACA+AGG | - | chr8.2:3358656-3358675 | MS.gene042249:intron | 40.0% | |
| TGAGGCCCCTAAAGTTAATT+TGG | - | chr8.2:3358933-3358952 | MS.gene042249:intron | 40.0% | |
| TGCTTCTTCAAAAGGGTCTA+TGG | - | chr8.2:3360448-3360467 | MS.gene042249:CDS | 40.0% | |
| TTACCCATTATTCACCCTGT+TGG | - | chr8.2:3358562-3358581 | MS.gene042249:intron | 40.0% | |
| TTCCACAGCAATAGCAAAAG+GGG | + | chr8.2:3359896-3359915 | None:intergenic | 40.0% | |
| TTGCAGTGGCACATACAATT+GGG | - | chr8.2:3359255-3359274 | MS.gene042249:intron | 40.0% | |
| TTGCATGCTTACAGGAAACA+AGG | + | chr8.2:3358971-3358990 | None:intergenic | 40.0% | |
| ! | CTTCCAATTGAAGGTGTGTT+AGG | - | chr8.2:3359587-3359606 | MS.gene042249:CDS | 40.0% |
| ! | GTTAATCTCATGGGCTACTA+GGG | - | chr8.2:3358906-3358925 | MS.gene042249:intron | 40.0% |
| ! | TGTTAATCTCATGGGCTACT+AGG | - | chr8.2:3358905-3358924 | MS.gene042249:intron | 40.0% |
| AGGGTCTAACAAATGCACTG+TGG | - | chr8.2:3360268-3360287 | MS.gene042249:intron | 45.0% | |
| AGTTCGACTAAGGGTCTGTT+TGG | + | chr8.2:3360296-3360315 | None:intergenic | 45.0% | |
| AGTTTCCCTCCTTGTGAGTT+TGG | + | chr8.2:3358668-3358687 | None:intergenic | 45.0% | |
| ATGGACCTGTGAATAGAGGA+AGG | + | chr8.2:3360749-3360768 | None:intergenic | 45.0% | |
| ATTCAGCCAAACAATGCCCT+TGG | - | chr8.2:3360700-3360719 | MS.gene042249:CDS | 45.0% | |
| CAACAACCAAACTCACAAGG+AGG | - | chr8.2:3358659-3358678 | MS.gene042249:intron | 45.0% | |
| CCAATGTGGCCTTTGTGTTT+AGG | - | chr8.2:3359779-3359798 | MS.gene042249:intron | 45.0% | |
| CCTAAACACAAAGGCCACAT+TGG | + | chr8.2:3359782-3359801 | None:intergenic | 45.0% | |
| CCTTCCACAGCAATAGCAAA+AGG | + | chr8.2:3359898-3359917 | None:intergenic | 45.0% | |
| CTGTGACCTATCTGCTTCAT+AGG | + | chr8.2:3358701-3358720 | None:intergenic | 45.0% | |
| GACAAAGTGGAAGTAAGCCA+AGG | + | chr8.2:3358862-3358881 | None:intergenic | 45.0% | |
| GGGTCTAACAAATGCACTGT+GGG | - | chr8.2:3360269-3360288 | MS.gene042249:intron | 45.0% | |
| GTCATGCCTATGAAGCAGAT+AGG | - | chr8.2:3358692-3358711 | MS.gene042249:CDS | 45.0% | |
| GTGGAAGTAAGCCAAGGATA+AGG | + | chr8.2:3358856-3358875 | None:intergenic | 45.0% | |
| GTTGCAGTGGCACATACAAT+TGG | - | chr8.2:3359254-3359273 | MS.gene042249:intron | 45.0% | |
| TGACACTGATATGTCGACAC+TGG | + | chr8.2:3359675-3359694 | None:intergenic | 45.0% | |
| !! | AACATGGTGGGCTTTGAATG+TGG | - | chr8.2:3358792-3358811 | MS.gene042249:CDS | 45.0% |
| !! | AGGGCATTGTTTGGCTGAAT+TGG | + | chr8.2:3360700-3360719 | None:intergenic | 45.0% |
| !!! | CCTTTTGCTATTGCTGTGGA+AGG | - | chr8.2:3359895-3359914 | MS.gene042249:intron | 45.0% |
| AGCAGATAGGTCACAGCCAT+TGG | - | chr8.2:3358705-3358724 | MS.gene042249:CDS | 50.0% | |
| CAAACAGCAGTGTCCCAGAT+TGG | - | chr8.2:3359943-3359962 | MS.gene042249:intron | 50.0% | |
| GATGAGAGAACCAGCAGCAA+GGG | + | chr8.2:3358884-3358903 | None:intergenic | 50.0% | |
| GATTGCAATGGCAGCACCAA+GGG | + | chr8.2:3360719-3360738 | None:intergenic | 50.0% | |
| GCGCAAACCATACTAGTGTG+TGG | - | chr8.2:3360360-3360379 | MS.gene042249:intron | 50.0% | |
| GGGAATGGACCTGTGAATAG+AGG | + | chr8.2:3360753-3360772 | None:intergenic | 50.0% | |
| GGGGGCTATGATATCCAATG+TGG | - | chr8.2:3359765-3359784 | MS.gene042249:intron | 50.0% | |
| TGATGAGAGAACCAGCAGCA+AGG | + | chr8.2:3358885-3358904 | None:intergenic | 50.0% | |
| TGGCACCTTCCTCTATTCAC+AGG | - | chr8.2:3360741-3360760 | MS.gene042249:CDS | 50.0% | |
| TGTGGAAGGCCCAAAGATGT+GGG | - | chr8.2:3359909-3359928 | MS.gene042249:intron | 50.0% | |
| TTCTGAGCTGCTTGTTCACC+TGG | + | chr8.2:3358748-3358767 | None:intergenic | 50.0% | |
| !! | GAAGGTGCCAAGGATTGCAA+TGG | + | chr8.2:3360731-3360750 | None:intergenic | 50.0% |
| !! | GTGAATAGAGGAAGGTGCCA+AGG | + | chr8.2:3360741-3360760 | None:intergenic | 50.0% |
| !!! | CACCCCTTTTGCTATTGCTG+TGG | - | chr8.2:3359891-3359910 | MS.gene042249:intron | 50.0% |
| ACCAGCAGCAAGGGACAAAG+TGG | + | chr8.2:3358875-3358894 | None:intergenic | 55.0% | |
| AGCCAGCAGCCCACATCTTT+GGG | + | chr8.2:3359921-3359940 | None:intergenic | 55.0% | |
| CTGTGGAAGGCCCAAAGATG+TGG | - | chr8.2:3359908-3359927 | MS.gene042249:intron | 55.0% | |
| GAGCTGCTTGTTCACCTGGT+AGG | + | chr8.2:3358744-3358763 | None:intergenic | 55.0% | |
| GGATTGCAATGGCAGCACCA+AGG | + | chr8.2:3360720-3360739 | None:intergenic | 55.0% | |
| TCCACTTTGTCCCTTGCTGC+TGG | - | chr8.2:3358871-3358890 | MS.gene042249:intron | 55.0% | |
| ! | ATGGGCTACTAGGGTTGCTG+AGG | - | chr8.2:3358915-3358934 | MS.gene042249:intron | 55.0% |
| ! | GGTGCTGCCATTGCAATCCT+TGG | - | chr8.2:3360721-3360740 | MS.gene042249:CDS | 55.0% |
| !! | GCAGCACCAAGGGCATTGTT+TGG | + | chr8.2:3360709-3360728 | None:intergenic | 55.0% |
| CAGCCAGCAGCCCACATCTT+TGG | + | chr8.2:3359922-3359941 | None:intergenic | 60.0% | |
| ! | CAAAGATGTGGGCTGCTGGC+TGG | - | chr8.2:3359920-3359939 | MS.gene042249:intron | 60.0% |
| ! | GGCCCAAAGATGTGGGCTGC+TGG | - | chr8.2:3359916-3359935 | MS.gene042249:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 3358475 | 3360949 | 3358475 | ID=MS.gene042249 |
| chr8.2 | mRNA | 3358475 | 3360949 | 3358475 | ID=MS.gene042249.t1;Parent=MS.gene042249 |
| chr8.2 | exon | 3360446 | 3360949 | 3360446 | ID=MS.gene042249.t1.exon1;Parent=MS.gene042249.t1 |
| chr8.2 | CDS | 3360446 | 3360949 | 3360446 | ID=cds.MS.gene042249.t1;Parent=MS.gene042249.t1 |
| chr8.2 | exon | 3359945 | 3360170 | 3359945 | ID=MS.gene042249.t1.exon2;Parent=MS.gene042249.t1 |
| chr8.2 | CDS | 3359945 | 3360170 | 3359945 | ID=cds.MS.gene042249.t1;Parent=MS.gene042249.t1 |
| chr8.2 | exon | 3359444 | 3359666 | 3359444 | ID=MS.gene042249.t1.exon3;Parent=MS.gene042249.t1 |
| chr8.2 | CDS | 3359444 | 3359666 | 3359444 | ID=cds.MS.gene042249.t1;Parent=MS.gene042249.t1 |
| chr8.2 | exon | 3358662 | 3358875 | 3358662 | ID=MS.gene042249.t1.exon4;Parent=MS.gene042249.t1 |
| chr8.2 | CDS | 3358662 | 3358875 | 3358662 | ID=cds.MS.gene042249.t1;Parent=MS.gene042249.t1 |
| chr8.2 | exon | 3358475 | 3358486 | 3358475 | ID=MS.gene042249.t1.exon5;Parent=MS.gene042249.t1 |
| chr8.2 | CDS | 3358475 | 3358486 | 3358475 | ID=cds.MS.gene042249.t1;Parent=MS.gene042249.t1 |
| Gene Sequence |
| Protein sequence |
