AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene042627

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene042627.t1 MTR_5g055100 87.764 237 29 0 1 237 1 237 4.10e-158 437
MS.gene042627.t1 MTR_2g085280 80.932 236 45 0 1 236 1 236 4.59e-143 400
MS.gene042627.t1 MTR_2g085250 80.932 236 45 0 1 236 1 236 1.39e-142 398
MS.gene042627.t1 MTR_5g045560 77.637 237 53 0 1 237 1 237 2.50e-127 360
MS.gene042627.t1 MTR_5g053390 75.556 225 55 0 1 225 1 225 1.36e-123 350
MS.gene042627.t1 MTR_1g077360 70.667 225 66 0 1 225 1 225 3.29e-114 327
MS.gene042627.t1 MTR_1g075600 70.222 225 67 0 1 225 1 225 1.08e-113 325
MS.gene042627.t1 MTR_8g043650 64.557 237 84 0 1 237 1 237 5.79e-113 323
MS.gene042627.t1 MTR_1g105920 68.037 219 70 0 1 219 1 219 1.35e-110 317
MS.gene042627.t1 MTR_1g012570 66.245 237 80 0 1 237 1 237 9.88e-107 308
MS.gene042627.t1 MTR_1g105910 63.291 237 87 0 1 237 1 237 1.79e-105 305
MS.gene042627.t1 MTR_2g030740 64.979 237 83 0 1 237 1 237 2.23e-105 304
MS.gene042627.t1 MTR_3g052920 64.840 219 77 0 1 219 1 219 1.12e-102 297
MS.gene042627.t1 MTR_1g105905 62.727 220 82 0 18 237 1 220 4.58e-100 290
MS.gene042627.t1 MTR_0121s0080 58.228 237 98 1 1 237 1 236 4.54e-97 283
MS.gene042627.t1 MTR_3g030770 61.277 235 73 3 1 225 1 227 1.20e-96 282
MS.gene042627.t1 MTR_1g108510 60.851 235 74 3 1 225 1 227 1.69e-94 276
MS.gene042627.t1 MTR_2g093190 60.000 235 76 3 1 225 1 227 1.84e-91 269
MS.gene042627.t1 MTR_3g052870 60.731 219 67 2 1 219 1 200 2.43e-88 260
MS.gene042627.t1 MTR_1g108580 55.230 239 90 3 1 237 1 224 1.38e-86 256
MS.gene042627.t1 MTR_1g106070 63.736 182 66 0 1 182 1 182 3.29e-82 243
MS.gene042627.t1 MTR_7g062350 52.542 236 110 2 3 237 14 248 5.56e-82 245
MS.gene042627.t1 MTR_1g075570 61.236 178 55 1 18 195 1 164 2.27e-63 195
MS.gene042627.t1 MTR_3g080940 45.685 197 103 1 1 193 1 197 1.83e-52 169
MS.gene042627.t1 MTR_0121s0100 63.281 128 47 0 1 128 1 128 8.88e-50 159
MS.gene042627.t1 MTR_3g067910 74.510 102 26 0 21 122 2 103 2.69e-49 157
MS.gene042627.t1 MTR_3g030780 61.789 123 47 0 1 123 1 123 3.94e-49 157
MS.gene042627.t1 MTR_3g067875 87.500 56 7 0 18 73 1 56 2.02e-29 105
MS.gene042627.t1 MTR_8g086290 36.145 166 96 2 5 167 8 166 2.24e-28 106
MS.gene042627.t1 MTR_2g105290 32.759 174 105 2 5 174 8 173 4.92e-28 105
MS.gene042627.t1 MTR_7g028448 38.961 154 82 2 5 158 8 149 5.06e-28 105
MS.gene042627.t1 MTR_4g036915 38.961 154 82 2 5 158 8 149 5.06e-28 105
MS.gene042627.t1 MTR_3g067915 54.945 91 41 0 33 123 3 93 6.09e-26 97.4
MS.gene042627.t1 MTR_3g067870 74.603 63 16 0 16 78 83 145 6.55e-26 99.4
MS.gene042627.t1 MTR_1g047550 51.948 77 37 0 9 85 2 78 7.44e-24 94.4
MS.gene042627.t1 MTR_8g079502 54.930 71 32 0 9 79 2 72 1.60e-23 93.6
MS.gene042627.t1 MTR_4g131030 37.423 163 90 5 9 161 2 162 2.95e-23 94.0
MS.gene042627.t1 MTR_8g051580 50.633 79 39 0 9 87 2 80 4.34e-22 89.7
MS.gene042627.t1 MTR_8g046350 53.247 77 36 0 9 85 2 78 6.41e-22 89.0
MS.gene042627.t1 MTR_1g108500 57.317 82 14 1 22 103 110 170 6.48e-22 92.8
MS.gene042627.t1 MTR_1g054265 48.101 79 41 0 9 87 2 80 8.51e-22 89.0
MS.gene042627.t1 MTR_1g063160 40.000 105 61 1 9 111 2 106 3.66e-21 87.4
MS.gene042627.t1 MTR_4g127140 35.393 178 107 3 5 175 8 184 3.31e-20 85.1
MS.gene042627.t1 MTR_4g094632 53.623 69 32 0 9 77 2 70 8.64e-19 80.5
MS.gene042627.t1 MTR_4g093970 45.000 100 46 2 10 101 29 127 1.19e-18 82.0
MS.gene042627.t1 MTR_3g005530 51.471 68 33 0 9 76 2 69 3.29e-18 80.5
MS.gene042627.t1 MTR_4g094638 52.174 69 33 0 9 77 2 70 8.33e-18 78.6
MS.gene042627.t1 MTR_3g452380 45.000 80 44 0 3 82 11 90 1.27e-17 79.3
MS.gene042627.t1 MTR_4g102530 50.000 72 36 0 10 81 3 74 2.76e-17 77.8
MS.gene042627.t1 MTR_8g033270 50.633 79 37 1 9 85 2 80 4.28e-17 78.2
MS.gene042627.t1 MTR_4g109830 52.174 69 32 1 9 76 2 70 6.17e-17 77.4
MS.gene042627.t1 MTR_1g053070 54.412 68 31 0 9 76 2 69 1.45e-16 76.6
MS.gene042627.t1 MTR_5g066180 50.000 68 34 0 9 76 2 69 1.85e-16 75.9
MS.gene042627.t1 MTR_7g075870 48.148 81 38 1 10 86 3 83 2.02e-16 75.5
MS.gene042627.t1 MTR_8g087860 50.000 68 34 0 9 76 18 85 2.12e-16 76.3
MS.gene042627.t1 MTR_6g464720 52.174 69 32 1 9 76 2 70 3.27e-16 75.9
MS.gene042627.t1 MTR_1g101970 52.941 68 32 0 9 76 2 69 4.46e-16 73.9
MS.gene042627.t1 MTR_2g017865 50.000 68 34 0 9 76 17 84 5.39e-16 75.1
MS.gene042627.t1 MTR_0003s0590 52.941 68 32 0 9 76 2 69 5.77e-16 75.1
MS.gene042627.t1 MTR_8g033220 46.667 75 40 0 10 84 3 77 7.21e-16 74.3
MS.gene042627.t1 MTR_8g033220 46.667 75 40 0 10 84 3 77 7.47e-16 74.3
MS.gene042627.t1 MTR_5g032150 50.000 68 34 0 9 76 2 69 1.30e-15 73.6
MS.gene042627.t1 MTR_5g032520 50.000 68 34 0 9 76 2 69 1.64e-15 73.6
MS.gene042627.t1 MTR_4g084740 48.101 79 39 2 9 86 2 79 1.87e-15 74.7
MS.gene042627.t1 MTR_2g009890 43.421 76 43 0 9 84 2 77 1.94e-15 73.9
MS.gene042627.t1 MTR_6g015975 50.725 69 33 1 9 76 2 70 2.97e-15 73.2
MS.gene042627.t1 MTR_7g016600 50.725 69 33 1 9 76 2 70 3.59e-15 72.8
MS.gene042627.t1 MTR_5g031000 45.588 68 37 0 9 76 2 69 3.68e-15 72.4
MS.gene042627.t1 MTR_5g031000 45.588 68 37 0 9 76 2 69 3.71e-15 72.8
MS.gene042627.t1 MTR_7g075870 47.561 82 38 2 10 86 3 84 4.65e-15 72.0
MS.gene042627.t1 MTR_7g016630 45.833 72 38 1 9 79 2 73 4.90e-15 72.4
MS.gene042627.t1 MTR_8g066260 47.826 69 35 1 9 76 2 70 4.99e-15 72.4
MS.gene042627.t1 MTR_5g021270 51.429 70 32 1 9 76 2 71 5.99e-15 72.0
MS.gene042627.t1 MTR_5g046790 47.826 69 35 1 9 76 2 70 6.04e-15 71.6
MS.gene042627.t1 MTR_5g021270 51.429 70 32 1 9 76 2 71 6.39e-15 72.0
MS.gene042627.t1 MTR_3g102570 49.296 71 35 1 9 78 2 72 8.52e-15 72.8
MS.gene042627.t1 MTR_7g075850 46.341 82 41 2 9 87 2 83 1.20e-14 71.2
MS.gene042627.t1 MTR_2g461710 53.571 56 26 0 9 64 2 57 1.40e-14 66.6
MS.gene042627.t1 MTR_1g038300 46.429 84 39 2 9 86 2 85 1.88e-14 70.5
MS.gene042627.t1 MTR_3g088615 45.714 70 36 1 9 76 2 71 2.62e-14 69.3
MS.gene042627.t1 MTR_5g046870 49.275 69 34 1 9 76 2 70 2.73e-14 67.4
MS.gene042627.t1 MTR_1g029670 48.485 66 33 1 9 74 2 66 4.83e-14 68.6
MS.gene042627.t1 MTR_5g066960 49.123 57 29 0 9 65 2 58 6.44e-14 64.7
MS.gene042627.t1 MTR_4g109810 26.316 247 135 6 9 230 2 226 1.74e-13 68.2
MS.gene042627.t1 MTR_3g113030 45.714 70 36 1 9 76 2 71 2.11e-13 67.8
MS.gene042627.t1 MTR_3g437790 30.769 143 80 5 26 158 30 163 2.15e-13 66.6
MS.gene042627.t1 MTR_8g097090 47.826 69 35 1 9 76 2 70 2.37e-13 67.8
MS.gene042627.t1 MTR_8g022970 29.825 171 93 5 2 158 9 166 3.41e-13 66.2
MS.gene042627.t1 MTR_3g084980 53.571 56 26 0 9 64 2 57 3.88e-13 67.0
MS.gene042627.t1 MTR_4g093030 33.607 122 61 2 9 114 2 119 6.74e-13 64.7
MS.gene042627.t1 MTR_4g051538 38.202 89 55 0 1 89 1 89 1.19e-11 62.8
MS.gene042627.t1 MTR_4g036050 41.429 70 40 1 9 77 2 71 1.64e-11 61.2
MS.gene042627.t1 MTR_4g036050 41.429 70 40 1 9 77 2 71 1.81e-11 61.6
MS.gene042627.t1 MTR_4g036050 41.429 70 40 1 9 77 2 71 1.83e-11 61.6
MS.gene042627.t1 MTR_4g036050 41.429 70 40 1 9 77 2 71 1.93e-11 61.6
MS.gene042627.t1 MTR_3g109930 30.818 159 96 5 27 178 20 171 5.34e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene042627.t1 AT5G60440 49.735 189 88 3 5 190 3 187 1.60e-53 174
MS.gene042627.t1 AT1G65360 43.684 190 98 4 5 192 3 185 4.42e-42 143
MS.gene042627.t1 AT2G24840 48.101 158 77 2 9 163 63 218 2.19e-38 134
MS.gene042627.t1 AT1G01530 41.053 190 104 3 4 192 2 184 2.63e-38 134
MS.gene042627.t1 AT4G36590 37.131 237 124 8 5 226 3 229 5.04e-36 128
MS.gene042627.t1 AT3G04100 27.551 196 138 2 2 193 7 202 2.74e-25 99.0
MS.gene042627.t1 AT2G34440 52.113 71 34 0 9 79 2 72 6.29e-22 89.4
MS.gene042627.t1 AT1G72350 35.542 166 69 5 9 169 43 175 8.35e-22 90.1
MS.gene042627.t1 AT3G66656 57.353 68 29 0 9 76 2 69 1.55e-21 88.6
MS.gene042627.t1 AT4G37940 32.948 173 85 5 9 154 2 170 4.01e-19 82.8
MS.gene042627.t1 AT2G45660 54.412 68 31 0 10 77 3 70 1.14e-18 80.5
MS.gene042627.t1 AT2G45650 55.882 68 30 0 9 76 2 69 1.43e-18 82.4
MS.gene042627.t1 AT5G51870 54.167 72 33 0 5 76 21 92 2.32e-18 80.5
MS.gene042627.t1 AT2G45660 54.412 68 31 0 10 77 3 70 3.30e-18 80.5
MS.gene042627.t1 AT4G37940 32.240 183 87 6 9 154 2 184 4.17e-18 80.5
MS.gene042627.t1 AT2G22630 32.240 183 87 6 9 154 2 184 5.30e-18 80.1
MS.gene042627.t1 AT2G22630 32.240 183 87 6 9 154 2 184 5.30e-18 80.1
MS.gene042627.t1 AT4G22950 48.611 72 37 0 10 81 3 74 6.83e-18 78.6
MS.gene042627.t1 AT4G09960 50.000 68 34 0 9 76 2 69 8.40e-18 79.3
MS.gene042627.t1 AT1G28460 30.286 175 108 5 5 170 4 173 8.66e-18 78.6
MS.gene042627.t1 AT4G09960 50.000 68 34 0 9 76 2 69 9.92e-18 79.3
MS.gene042627.t1 AT4G09960 50.000 68 34 0 9 76 3 70 1.06e-17 79.3
MS.gene042627.t1 AT4G09960 50.000 68 34 0 9 76 12 79 1.23e-17 79.3
MS.gene042627.t1 AT5G51870 55.224 67 30 0 10 76 3 69 1.46e-17 77.8
MS.gene042627.t1 AT5G51870 55.224 67 30 0 10 76 3 69 1.89e-17 78.2
MS.gene042627.t1 AT4G09960 50.000 68 34 0 9 76 28 95 1.90e-17 79.3
MS.gene042627.t1 AT4G22950 49.296 71 36 0 10 80 3 73 2.26e-17 78.2
MS.gene042627.t1 AT4G22950 49.296 71 36 0 10 80 3 73 2.26e-17 78.2
MS.gene042627.t1 AT5G51870 54.286 70 32 0 7 76 10 79 2.43e-17 78.6
MS.gene042627.t1 AT5G51870 55.224 67 30 0 10 76 3 69 3.27e-17 77.8
MS.gene042627.t1 AT5G23260 36.242 149 67 4 5 125 14 162 3.89e-17 78.6
MS.gene042627.t1 AT5G10140 50.725 69 33 1 9 76 2 70 4.51e-17 76.3
MS.gene042627.t1 AT4G09960 50.000 68 34 0 9 76 97 164 4.67e-17 79.3
MS.gene042627.t1 AT5G10140 30.208 192 120 3 9 199 2 180 5.49e-17 76.6
MS.gene042627.t1 AT5G62165 52.239 67 32 0 10 76 3 69 5.70e-17 74.3
MS.gene042627.t1 AT5G10140 50.725 69 33 1 9 76 2 70 6.53e-17 76.3
MS.gene042627.t1 AT3G57390 54.412 68 31 0 9 76 2 69 6.66e-17 77.4
MS.gene042627.t1 AT5G62165 52.239 67 32 0 10 76 3 69 7.01e-17 75.5
MS.gene042627.t1 AT5G62165 52.239 67 32 0 10 76 3 69 7.01e-17 75.5
MS.gene042627.t1 AT5G62165 52.239 67 32 0 10 76 3 69 7.01e-17 75.5
MS.gene042627.t1 AT3G57230 47.059 68 36 0 9 76 2 69 8.76e-17 75.1
MS.gene042627.t1 AT5G10140 50.725 69 33 1 9 76 2 70 8.81e-17 75.9
MS.gene042627.t1 AT5G62165 52.239 67 32 0 10 76 3 69 9.41e-17 75.1
MS.gene042627.t1 AT5G62165 52.239 67 32 0 10 76 3 69 9.41e-17 75.1
MS.gene042627.t1 AT5G62165 52.239 67 32 0 10 76 3 69 9.41e-17 75.1
MS.gene042627.t1 AT5G62165 52.239 67 32 0 10 76 3 69 9.41e-17 75.1
MS.gene042627.t1 AT5G62165 52.239 67 32 0 10 76 3 69 9.41e-17 75.1
MS.gene042627.t1 AT5G23260 46.739 92 43 2 5 90 14 105 1.05e-16 77.4
MS.gene042627.t1 AT3G30260 30.822 146 71 4 9 124 2 147 1.06e-16 77.0
MS.gene042627.t1 AT5G23260 36.000 150 68 4 9 130 2 151 1.24e-16 77.0
MS.gene042627.t1 AT3G57390 54.412 68 31 0 9 76 2 69 1.37e-16 77.0
MS.gene042627.t1 AT4G18960 48.000 75 39 0 2 76 11 85 1.40e-16 76.6
MS.gene042627.t1 AT3G61120 52.941 68 32 0 9 76 2 69 1.74e-16 76.3
MS.gene042627.t1 AT2G42830 46.053 76 41 0 1 76 9 84 1.93e-16 76.3
MS.gene042627.t1 AT2G42830 46.053 76 41 0 1 76 9 84 1.93e-16 76.3
MS.gene042627.t1 AT5G62165 52.239 67 32 0 10 76 3 69 1.97e-16 75.5
MS.gene042627.t1 AT5G62165 52.239 67 32 0 10 76 3 69 1.97e-16 75.5
MS.gene042627.t1 AT1G29962 27.545 167 107 4 5 157 4 170 2.06e-16 75.1
MS.gene042627.t1 AT5G62165 52.239 67 32 0 10 76 3 69 2.28e-16 75.5
MS.gene042627.t1 AT5G62165 52.239 67 32 0 10 76 3 69 2.28e-16 75.5
MS.gene042627.t1 AT5G62165 52.239 67 32 0 10 76 3 69 2.28e-16 75.5
MS.gene042627.t1 AT2G22540 50.000 68 34 0 9 76 2 69 2.49e-16 75.9
MS.gene042627.t1 AT2G22540 50.000 68 34 0 9 76 2 69 2.49e-16 75.9
MS.gene042627.t1 AT3G57230 47.059 68 36 0 9 76 2 69 2.51e-16 75.9
MS.gene042627.t1 AT3G57230 47.059 68 36 0 9 76 2 69 2.51e-16 75.9
MS.gene042627.t1 AT3G58780 49.296 71 36 0 6 76 14 84 2.69e-16 75.9
MS.gene042627.t1 AT3G58780 49.296 71 36 0 6 76 20 90 3.24e-16 75.9
MS.gene042627.t1 AT4G24540 52.941 68 32 0 9 76 2 69 3.26e-16 75.1
MS.gene042627.t1 AT4G37940 48.529 68 35 0 9 76 2 69 3.52e-16 73.9
MS.gene042627.t1 AT5G23260 47.727 88 40 2 9 90 2 89 3.89e-16 75.5
MS.gene042627.t1 AT5G51860 52.239 67 32 0 10 76 3 69 4.96e-16 74.3
MS.gene042627.t1 AT3G58780 46.667 75 40 0 2 76 10 84 5.58e-16 75.5
MS.gene042627.t1 AT5G51860 52.239 67 32 0 10 76 3 69 7.01e-16 73.9
MS.gene042627.t1 AT5G13790 50.000 68 34 0 9 76 2 69 7.40e-16 75.1
MS.gene042627.t1 AT5G13790 50.000 68 34 0 9 76 2 69 7.72e-16 75.1
MS.gene042627.t1 AT3G54340 48.571 70 34 1 9 76 2 71 8.49e-16 74.3
MS.gene042627.t1 AT1G77980 41.573 89 51 1 9 96 2 90 9.36e-16 75.5
MS.gene042627.t1 AT1G22130 38.384 99 60 1 9 106 2 100 1.92e-15 74.7
MS.gene042627.t1 AT5G60910 49.275 69 34 1 9 76 2 70 2.37e-15 73.2
MS.gene042627.t1 AT5G65050 49.275 69 34 1 9 76 2 70 2.60e-15 72.0
MS.gene042627.t1 AT1G77950 44.737 76 40 2 9 83 2 76 3.87e-15 72.8
MS.gene042627.t1 AT1G77950 44.737 76 40 2 9 83 2 76 3.87e-15 72.8
MS.gene042627.t1 AT1G77950 44.737 76 40 2 9 83 2 76 3.87e-15 72.8
MS.gene042627.t1 AT1G77950 44.737 76 40 2 9 83 2 76 3.87e-15 72.8
MS.gene042627.t1 AT4G11880 48.611 72 36 1 10 80 3 74 4.30e-15 71.2
MS.gene042627.t1 AT4G11880 48.611 72 36 1 10 80 3 74 4.30e-15 71.2
MS.gene042627.t1 AT2G14210 49.275 69 34 1 9 76 2 70 4.84e-15 72.4
MS.gene042627.t1 AT2G14210 49.275 69 34 1 9 76 2 70 6.19e-15 72.0
MS.gene042627.t1 AT4G11880 48.611 72 36 1 10 80 3 74 6.39e-15 71.6
MS.gene042627.t1 AT4G11880 48.611 72 36 1 10 80 3 74 6.39e-15 71.6
MS.gene042627.t1 AT1G26310 46.377 69 36 1 9 76 2 70 6.58e-15 72.4
MS.gene042627.t1 AT5G65050 49.275 69 34 1 9 76 2 70 6.77e-15 70.9
MS.gene042627.t1 AT5G65050 49.275 69 34 1 9 76 2 70 6.83e-15 71.2
MS.gene042627.t1 AT5G65050 49.275 69 34 1 9 76 2 70 7.46e-15 70.9
MS.gene042627.t1 AT1G17310 52.632 76 34 1 8 83 47 120 7.97e-15 71.2
MS.gene042627.t1 AT5G15800 50.725 69 33 1 9 76 2 70 8.19e-15 72.0
MS.gene042627.t1 AT1G69120 46.377 69 36 1 9 76 2 70 8.35e-15 71.6
MS.gene042627.t1 AT2G03710 42.000 100 50 3 9 100 2 101 9.50e-15 72.0
MS.gene042627.t1 AT2G03710 42.000 100 50 3 9 100 2 101 9.66e-15 70.5
MS.gene042627.t1 AT2G03710 42.000 100 50 3 9 100 2 101 9.67e-15 71.6
MS.gene042627.t1 AT1G17310 52.632 76 34 1 8 83 58 131 1.17e-14 71.2
MS.gene042627.t1 AT5G20240 47.143 70 35 1 9 76 2 71 1.20e-14 69.3
MS.gene042627.t1 AT5G15800 50.725 69 33 1 9 76 2 70 1.36e-14 71.6
MS.gene042627.t1 AT5G20240 47.143 70 35 1 9 76 2 71 1.53e-14 70.5
MS.gene042627.t1 AT1G69120 46.377 69 36 1 9 76 2 70 1.71e-14 71.2
MS.gene042627.t1 AT5G65060 47.826 69 35 1 9 76 2 70 5.10e-14 68.6
MS.gene042627.t1 AT5G65060 47.826 69 35 1 9 76 2 70 5.17e-14 68.6
MS.gene042627.t1 AT5G65060 47.826 69 35 1 9 76 2 70 5.29e-14 68.6
MS.gene042627.t1 AT5G65070 42.169 83 44 2 9 90 2 81 6.38e-14 67.4
MS.gene042627.t1 AT2G22540 57.143 56 24 0 9 64 2 57 6.64e-14 69.3
MS.gene042627.t1 AT5G65070 31.210 157 77 6 9 138 2 154 8.94e-14 68.2
MS.gene042627.t1 AT1G28450 28.409 176 112 6 5 168 4 177 9.15e-14 67.8
MS.gene042627.t1 AT1G71692 47.143 70 36 1 9 77 2 71 1.15e-13 68.2
MS.gene042627.t1 AT3G58780 50.820 61 30 0 6 66 14 74 1.26e-13 68.6
MS.gene042627.t1 AT3G02310 46.377 69 36 1 9 76 2 70 1.59e-13 67.4
MS.gene042627.t1 AT1G47760 31.304 115 69 2 9 115 2 114 1.78e-13 67.0
MS.gene042627.t1 AT3G58780 47.692 65 34 0 2 66 10 74 1.81e-13 68.6
MS.gene042627.t1 AT5G65070 42.169 83 44 2 9 90 2 81 2.20e-13 67.8
MS.gene042627.t1 AT1G24260 55.357 56 25 0 9 64 2 57 2.48e-13 67.8
MS.gene042627.t1 AT5G65070 42.169 83 44 2 9 90 2 81 2.50e-13 67.0
MS.gene042627.t1 AT1G24260 47.826 69 35 1 9 76 2 70 2.55e-13 67.8
MS.gene042627.t1 AT1G24260 47.826 69 35 1 9 76 2 70 2.69e-13 67.8
MS.gene042627.t1 AT3G02310 46.377 69 36 1 9 76 2 70 3.47e-13 67.4
MS.gene042627.t1 AT5G65080 40.230 87 48 2 1 86 1 84 1.86e-12 64.3
MS.gene042627.t1 AT5G65070 49.123 57 29 0 9 65 2 58 2.43e-12 64.7
MS.gene042627.t1 AT4G37435 41.667 72 41 1 9 79 2 73 1.69e-11 61.6
MS.gene042627.t1 AT1G18750 37.662 77 46 1 9 83 2 78 1.87e-11 63.5
MS.gene042627.t1 AT1G18750 37.662 77 46 1 9 83 2 78 2.21e-11 63.2
MS.gene042627.t1 AT1G18750 37.662 77 46 1 9 83 2 78 2.34e-11 63.2
MS.gene042627.t1 AT5G65080 43.548 62 35 0 1 62 1 62 2.77e-11 61.2
MS.gene042627.t1 AT5G49490 38.636 88 47 2 5 85 41 128 6.78e-11 61.2
MS.gene042627.t1 AT2G26320 41.892 74 41 1 5 76 14 87 7.53e-11 58.2

Find 57 sgRNAs with CRISPR-Local

Find 62 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GACCTTATTCATCTCATAAA+TGG 0.175011 5.2:+46693738 None:intergenic
TTTGTTTGGTTTCAACAATT+TGG 0.192492 5.2:-46693500 MS.gene042627:CDS
GAACCATTTCCAACATAAAA+TGG 0.249437 5.2:+46693616 None:intergenic
ATTGCATGATGTCATCGTTT+TGG 0.268048 5.2:+46693908 None:intergenic
TCTATGATCGTTTCAACATT+TGG 0.289536 5.2:+46693955 None:intergenic
CAACATAAAATGGAAGGGTT+TGG 0.295108 5.2:+46693626 None:intergenic
TTGTTTGGTTTCAACAATTT+GGG 0.306327 5.2:-46693499 MS.gene042627:CDS
GTTGAATCTTGTTGAGGATT+TGG 0.322565 5.2:+46693565 None:intergenic
TTGTTGCTCAACATGCTGAT+AGG 0.333786 5.2:-46693672 MS.gene042627:CDS
CCTGATTTGTCTTTCGCACC+TGG 0.338707 5.2:+46693782 None:intergenic
ATTATACAAGAAGGCTTTAG+AGG 0.340263 5.2:-46693707 MS.gene042627:CDS
AACATAAAATGGAAGGGTTT+GGG 0.353082 5.2:+46693627 None:intergenic
TGCTGATAGGGTTGAAATGC+AGG 0.408645 5.2:-46693659 MS.gene042627:CDS
ATGTTGCAACCACATTTGTT+TGG 0.415267 5.2:-46693514 MS.gene042627:CDS
ACCTTATTCATCTCATAAAT+GGG 0.419947 5.2:+46693739 None:intergenic
TCCCATTTATGAGATGAATA+AGG 0.420859 5.2:-46693740 MS.gene042627:CDS
AGTGAGCTTTGCACCCTTTG+TGG 0.424656 5.2:-46694036 MS.gene042627:CDS
GTTGGAAATGGTTCATCCTC+TGG 0.431923 5.2:-46693607 MS.gene042627:CDS
TTCAACAATTTGGGAGAAGA+AGG 0.443069 5.2:-46693490 MS.gene042627:CDS
CGCAATATATGCACCACAAA+GGG 0.465418 5.2:+46694023 None:intergenic
AACAAATGTGGTTGCAACAT+AGG 0.466580 5.2:+46693517 None:intergenic
CCTTCTTGTATAATTCAAGT+TGG 0.484620 5.2:+46693716 None:intergenic
TGACATCATGCAATTAATTG+AGG 0.491229 5.2:-46693899 MS.gene042627:CDS
CCAGGTGCGAAAGACAAATC+AGG 0.504787 5.2:-46693782 MS.gene042627:CDS
GCTCGCGCACCTTGGCTCTA+CGG 0.510044 5.2:+46693872 None:intergenic
ACAAATGTGGTTGCAACATA+GGG 0.521813 5.2:+46693518 None:intergenic
GAAGGTGGACATGGTCCCCA+TGG 0.528388 5.2:-46693472 MS.gene042627:CDS
GCCAAGGTGCGCGAGCTCAA+TGG 0.535008 5.2:-46693865 MS.gene042627:CDS
ACCATTGAGCTCGCGCACCT+TGG 0.535093 5.2:+46693864 None:intergenic
CCAACTTGAATTATACAAGA+AGG 0.537115 5.2:-46693716 MS.gene042627:CDS
CATTTCCAACATAAAATGGA+AGG 0.542188 5.2:+46693620 None:intergenic
AACAATTTGGGAGAAGAAGG+TGG 0.543368 5.2:-46693487 MS.gene042627:CDS
GAGCTCAATGGTATATTGAC+TGG 0.544330 5.2:-46693853 MS.gene042627:CDS
TGTTGCTCAACATGCTGATA+GGG 0.545180 5.2:-46693671 MS.gene042627:CDS
CTTTCTCGAAGCGCCGTAGT+GGG 0.553366 5.2:-46694074 MS.gene042627:CDS
CCGTGAGAATGAGCTAATCC+AGG 0.557926 5.2:-46693800 MS.gene042627:CDS
ATTTCCAACATAAAATGGAA+GGG 0.561384 5.2:+46693621 None:intergenic
GCTCATATCAAAAGAACCCA+TGG 0.571548 5.2:+46693455 None:intergenic
GGATTTGGCTGATGCTCAAG+AGG 0.571835 5.2:+46693580 None:intergenic
ACTTTCTCGAAGCGCCGTAG+TGG 0.571963 5.2:-46694075 MS.gene042627:CDS
ACTGGTATGAAAGATGCAAT+CGG 0.573096 5.2:-46693835 MS.gene042627:CDS
GCGTTAATCATATTCTCACC+TGG 0.578489 5.2:-46694003 MS.gene042627:CDS
TTGGGAGAAGAAGGTGGACA+TGG 0.599597 5.2:-46693481 MS.gene042627:CDS
CTCATATCAAAAGAACCCAT+GGG 0.612341 5.2:+46693456 None:intergenic
TGTGCTTTAGCCATGTCAAG+CGG 0.619256 5.2:-46694165 None:intergenic
GGAAAGGTTGAATCTTGTTG+AGG 0.620573 5.2:+46693559 None:intergenic
TCAAGCGGAAAGAAAACTCA+AGG 0.621333 5.2:-46694150 MS.gene042627:CDS
AAGGTGGACATGGTCCCCAT+GGG 0.627258 5.2:-46693471 MS.gene042627:CDS
CCTGGATTAGCTCATTCTCA+CGG 0.627343 5.2:+46693800 None:intergenic
CTTTCTTGAAGAGCCCACTA+CGG 0.627906 5.2:+46694061 None:intergenic
ACGCAATATATGCACCACAA+AGG 0.628806 5.2:+46694022 None:intergenic
AATGAAAATACTTTCTCACC+AGG 0.642771 5.2:+46693985 None:intergenic
TGAGGATTACCGTAGAGCCA+AGG 0.649629 5.2:-46693881 MS.gene042627:CDS
GCTGATAGGGTTGAAATGCA+GGG 0.657468 5.2:-46693658 MS.gene042627:CDS
ATGCTCAAGAGGCATGCCAG+AGG 0.675147 5.2:+46693591 None:intergenic
TTGTTGAAACCAAACAAATG+TGG 0.685209 5.2:+46693505 None:intergenic
TCATATCAAAAGAACCCATG+GGG 0.745957 5.2:+46693457 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! ACCTTATTCATCTCATAAAT+GGG + chr5.2:46693879-46693898 None:intergenic 25.0%
! ATTTCCAACATAAAATGGAA+GGG + chr5.2:46693997-46694016 None:intergenic 25.0%
!! TTGTTTGGTTTCAACAATTT+GGG - chr5.2:46694116-46694135 MS.gene042627:CDS 25.0%
!! TTTGTTTGGTTTCAACAATT+TGG - chr5.2:46694115-46694134 MS.gene042627:CDS 25.0%
AACATAAAATGGAAGGGTTT+GGG + chr5.2:46693991-46694010 None:intergenic 30.0%
AATGAAAATACTTTCTCACC+AGG + chr5.2:46693633-46693652 None:intergenic 30.0%
CATTTCCAACATAAAATGGA+AGG + chr5.2:46693998-46694017 None:intergenic 30.0%
CCAACTTGAATTATACAAGA+AGG - chr5.2:46693899-46693918 MS.gene042627:CDS 30.0%
CCTTCTTGTATAATTCAAGT+TGG + chr5.2:46693902-46693921 None:intergenic 30.0%
GAACCATTTCCAACATAAAA+TGG + chr5.2:46694002-46694021 None:intergenic 30.0%
GACCTTATTCATCTCATAAA+TGG + chr5.2:46693880-46693899 None:intergenic 30.0%
TCCCATTTATGAGATGAATA+AGG - chr5.2:46693875-46693894 MS.gene042627:CDS 30.0%
TCTATGATCGTTTCAACATT+TGG + chr5.2:46693663-46693682 None:intergenic 30.0%
TGACATCATGCAATTAATTG+AGG - chr5.2:46693716-46693735 MS.gene042627:CDS 30.0%
TTGTTGAAACCAAACAAATG+TGG + chr5.2:46694113-46694132 None:intergenic 30.0%
! AGACAAATCAGGAACATTTT+TGG - chr5.2:46693844-46693863 MS.gene042627:CDS 30.0%
! ATTATACAAGAAGGCTTTAG+AGG - chr5.2:46693908-46693927 MS.gene042627:CDS 30.0%
! CTTCCATTTTATGTTGGAAA+TGG - chr5.2:46693996-46694015 MS.gene042627:CDS 30.0%
!!! GGTGAGAAAGTATTTTCATT+TGG - chr5.2:46693633-46693652 MS.gene042627:CDS 30.0%
AACAAATGTGGTTGCAACAT+AGG + chr5.2:46694101-46694120 None:intergenic 35.0%
ACAAATGTGGTTGCAACATA+GGG + chr5.2:46694100-46694119 None:intergenic 35.0%
ACTGGTATGAAAGATGCAAT+CGG - chr5.2:46693780-46693799 MS.gene042627:CDS 35.0%
ATGAAAAAACTCTGCTGGAA+AGG + chr5.2:46694075-46694094 None:intergenic 35.0%
ATGTTGCAACCACATTTGTT+TGG - chr5.2:46694101-46694120 MS.gene042627:CDS 35.0%
CAACATAAAATGGAAGGGTT+TGG + chr5.2:46693992-46694011 None:intergenic 35.0%
GTTGAATCTTGTTGAGGATT+TGG + chr5.2:46694053-46694072 None:intergenic 35.0%
TTCAACAATTTGGGAGAAGA+AGG - chr5.2:46694125-46694144 MS.gene042627:CDS 35.0%
! ATTGCATGATGTCATCGTTT+TGG + chr5.2:46693710-46693729 None:intergenic 35.0%
! CAAACCCTTCCATTTTATGT+TGG - chr5.2:46693990-46694009 MS.gene042627:CDS 35.0%
! TTGCATGATGTCATCGTTTT+GGG + chr5.2:46693709-46693728 None:intergenic 35.0%
!! CAAATCAGGAACATTTTTGG+TGG - chr5.2:46693847-46693866 MS.gene042627:CDS 35.0%
AACAATTTGGGAGAAGAAGG+TGG - chr5.2:46694128-46694147 MS.gene042627:CDS 40.0%
ACGCAATATATGCACCACAA+AGG + chr5.2:46693596-46693615 None:intergenic 40.0%
CGCAATATATGCACCACAAA+GGG + chr5.2:46693595-46693614 None:intergenic 40.0%
GAGCTCAATGGTATATTGAC+TGG - chr5.2:46693762-46693781 MS.gene042627:CDS 40.0%
GCGTTAATCATATTCTCACC+TGG - chr5.2:46693612-46693631 MS.gene042627:CDS 40.0%
GGAAAGGTTGAATCTTGTTG+AGG + chr5.2:46694059-46694078 None:intergenic 40.0%
GGGTTATGAAAAAACTCTGC+TGG + chr5.2:46694080-46694099 None:intergenic 40.0%
TCAAGCGGAAAGAAAACTCA+AGG - chr5.2:46693465-46693484 MS.gene042627:CDS 40.0%
TGTTGCTCAACATGCTGATA+GGG - chr5.2:46693944-46693963 MS.gene042627:CDS 40.0%
TTGTTGCTCAACATGCTGAT+AGG - chr5.2:46693943-46693962 MS.gene042627:CDS 40.0%
CTTTCTTGAAGAGCCCACTA+CGG + chr5.2:46693557-46693576 None:intergenic 45.0%
GCTGATAGGGTTGAAATGCA+GGG - chr5.2:46693957-46693976 MS.gene042627:CDS 45.0%
GTTGGAAATGGTTCATCCTC+TGG - chr5.2:46694008-46694027 MS.gene042627:CDS 45.0%
TGCTGATAGGGTTGAAATGC+AGG - chr5.2:46693956-46693975 MS.gene042627:CDS 45.0%
!! ATGATGTCATCGTTTTGGGC+TGG + chr5.2:46693705-46693724 None:intergenic 45.0%
!! CCTGGATTAGCTCATTCTCA+CGG + chr5.2:46693818-46693837 None:intergenic 45.0%
AGTGAGCTTTGCACCCTTTG+TGG - chr5.2:46693579-46693598 MS.gene042627:CDS 50.0%
CCAGGTGCGAAAGACAAATC+AGG - chr5.2:46693833-46693852 MS.gene042627:CDS 50.0%
CCGTGAGAATGAGCTAATCC+AGG - chr5.2:46693815-46693834 MS.gene042627:CDS 50.0%
GGATTTGGCTGATGCTCAAG+AGG + chr5.2:46694038-46694057 None:intergenic 50.0%
TGAGGATTACCGTAGAGCCA+AGG - chr5.2:46693734-46693753 MS.gene042627:CDS 50.0%
TTGGGAGAAGAAGGTGGACA+TGG - chr5.2:46694134-46694153 MS.gene042627:CDS 50.0%
! CCTGATTTGTCTTTCGCACC+TGG + chr5.2:46693836-46693855 None:intergenic 50.0%
AAGGTGGACATGGTCCCCAT+GGG - chr5.2:46694144-46694163 MS.gene042627:CDS 55.0%
! ATGCTCAAGAGGCATGCCAG+AGG + chr5.2:46694027-46694046 None:intergenic 55.0%
!! ACTTTCTCGAAGCGCCGTAG+TGG - chr5.2:46693540-46693559 MS.gene042627:CDS 55.0%
!! CTTTCTCGAAGCGCCGTAGT+GGG - chr5.2:46693541-46693560 MS.gene042627:CDS 55.0%
ACCATTGAGCTCGCGCACCT+TGG + chr5.2:46693754-46693773 None:intergenic 60.0%
GAAGGTGGACATGGTCCCCA+TGG - chr5.2:46694143-46694162 MS.gene042627:CDS 60.0%
GCCAAGGTGCGCGAGCTCAA+TGG - chr5.2:46693750-46693769 MS.gene042627:CDS 65.0%
!! GCTCGCGCACCTTGGCTCTA+CGG + chr5.2:46693746-46693765 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 46693462 46694175 46693462 ID=MS.gene042627
chr5.2 mRNA 46693462 46694175 46693462 ID=MS.gene042627.t1;Parent=MS.gene042627
chr5.2 exon 46693462 46694175 46693462 ID=MS.gene042627.t1.exon1;Parent=MS.gene042627.t1
chr5.2 CDS 46693462 46694175 46693462 ID=cds.MS.gene042627.t1;Parent=MS.gene042627.t1
Gene Sequence

>MS.gene042627

ATGTCAAGCGGAAAGAAAACTCAAGGTCGTAAAAAGATTGAGATGAAAAAGATGAGCAATGAAAGCAACTTGCAAGTGACTTTCTCGAAGCGCCGTAGTGGGCTCTTCAAGAAAGCTAGTGAGCTTTGCACCCTTTGTGGTGCATATATTGCGTTAATCATATTCTCACCTGGTGAGAAAGTATTTTCATTTGGTCATCCAAATGTTGAAACGATCATAGATCGTTATCTCTCTCAAGTTCCAGCCCAAAACGATGACATCATGCAATTAATTGAGGATTACCGTAGAGCCAAGGTGCGCGAGCTCAATGGTATATTGACTGGTATGAAAGATGCAATCGGCATCAATAAGAACCGTGAGAATGAGCTAATCCAGGTGCGAAAGACAAATCAGGAACATTTTTGGTGGACTCGTCCCATTTATGAGATGAATAAGGTCCAACTTGAATTATACAAGAAGGCTTTAGAGGATCTTCTTAAACTTGTTGCTCAACATGCTGATAGGGTTGAAATGCAGGGTACTTCTACCCAAACCCTTCCATTTTATGTTGGAAATGGTTCATCCTCTGGCATGCCTCTTGAGCATCAGCCAAATCCTCAACAAGATTCAACCTTTCCAGCAGAGTTTTTTCATAACCCTATGTTGCAACCACATTTGTTTGGTTTCAACAATTTGGGAGAAGAAGGTGGACATGGTCCCCATGGGTTCTTTTGA
Protein sequence

>MS.gene042627.t1

MSSGKKTQGRKKIEMKKMSNESNLQVTFSKRRSGLFKKASELCTLCGAYIALIIFSPGEKVFSFGHPNVETIIDRYLSQVPAQNDDIMQLIEDYRRAKVRELNGILTGMKDAIGINKNRENELIQVRKTNQEHFWWTRPIYEMNKVQLELYKKALEDLLKLVAQHADRVEMQGTSTQTLPFYVGNGSSSGMPLEHQPNPQQDSTFPAEFFHNPMLQPHLFGFNNLGEEGGHGPHGFF