AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene042644

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene042644.t1 MTR_5g045560 88.304 171 20 0 1 171 1 171 2.60e-111 317
MS.gene042644.t1 MTR_5g053390 78.363 171 37 0 1 171 1 171 4.35e-96 278
MS.gene042644.t1 MTR_5g055100 78.947 171 36 0 1 171 1 171 3.68e-95 275
MS.gene042644.t1 MTR_2g085280 76.608 171 40 0 1 171 1 171 4.89e-95 275
MS.gene042644.t1 MTR_2g085250 76.608 171 40 0 1 171 1 171 5.16e-95 275
MS.gene042644.t1 MTR_1g105920 70.175 171 51 0 1 171 1 171 3.00e-86 253
MS.gene042644.t1 MTR_1g075600 72.189 169 47 0 1 169 1 169 4.21e-86 253
MS.gene042644.t1 MTR_2g030740 70.175 171 51 0 1 171 1 171 1.22e-85 251
MS.gene042644.t1 MTR_1g105910 69.006 171 53 0 1 171 1 171 5.81e-85 249
MS.gene042644.t1 MTR_8g043650 69.006 171 53 0 1 171 1 171 1.28e-84 249
MS.gene042644.t1 MTR_3g052920 68.421 171 54 0 1 171 1 171 5.32e-83 244
MS.gene042644.t1 MTR_1g077360 68.639 169 53 0 1 169 1 169 1.25e-82 244
MS.gene042644.t1 MTR_1g106070 67.836 171 55 0 1 171 1 171 2.59e-82 241
MS.gene042644.t1 MTR_3g030770 69.880 166 50 0 1 166 1 166 5.32e-81 239
MS.gene042644.t1 MTR_1g108510 69.277 166 51 0 1 166 1 166 5.61e-81 239
MS.gene042644.t1 MTR_1g012570 68.421 171 54 0 1 171 1 171 2.04e-80 238
MS.gene042644.t1 MTR_2g093190 68.675 166 52 0 1 166 1 166 1.18e-78 233
MS.gene042644.t1 MTR_1g108580 66.867 166 55 0 1 166 1 166 1.55e-76 228
MS.gene042644.t1 MTR_0121s0080 61.988 171 65 0 1 171 1 171 3.61e-70 212
MS.gene042644.t1 MTR_3g052870 61.988 171 46 2 1 171 1 152 8.27e-69 208
MS.gene042644.t1 MTR_1g105905 62.338 154 58 0 18 171 1 154 2.29e-65 199
MS.gene042644.t1 MTR_0121s0100 66.667 132 44 0 1 132 1 132 1.95e-58 179
MS.gene042644.t1 MTR_3g080940 51.875 160 77 0 9 168 9 168 5.82e-58 180
MS.gene042644.t1 MTR_3g030780 63.281 128 47 0 1 128 1 128 7.13e-55 170
MS.gene042644.t1 MTR_7g062350 56.757 148 64 0 24 171 36 183 2.46e-53 170
MS.gene042644.t1 MTR_3g067910 76.238 101 24 0 23 123 4 104 1.60e-52 163
MS.gene042644.t1 MTR_1g075570 59.211 152 48 1 18 169 1 138 6.75e-51 160
MS.gene042644.t1 MTR_8g086290 38.788 165 95 2 5 168 8 167 2.81e-33 116
MS.gene042644.t1 MTR_3g067915 79.104 67 14 0 60 126 30 96 5.78e-33 113
MS.gene042644.t1 MTR_2g105290 35.758 165 102 1 5 169 8 168 3.12e-31 111
MS.gene042644.t1 MTR_3g067875 87.500 56 7 0 18 73 1 56 1.85e-30 105
MS.gene042644.t1 MTR_7g028448 40.000 155 81 2 5 159 8 150 6.90e-30 107
MS.gene042644.t1 MTR_4g036915 40.000 155 81 2 5 159 8 150 6.90e-30 107
MS.gene042644.t1 MTR_3g067870 73.016 63 17 0 16 78 83 145 6.32e-25 94.7
MS.gene042644.t1 MTR_1g108500 55.435 92 20 1 23 114 111 181 8.45e-25 98.2
MS.gene042644.t1 MTR_4g127140 35.429 175 99 3 5 169 8 178 1.23e-24 94.7
MS.gene042644.t1 MTR_1g047550 54.930 71 32 0 9 79 2 72 3.24e-24 93.6
MS.gene042644.t1 MTR_4g131030 36.765 136 67 2 9 125 2 137 4.68e-24 94.0
MS.gene042644.t1 MTR_8g079502 54.930 71 32 0 9 79 2 72 5.45e-24 92.8
MS.gene042644.t1 MTR_8g051580 43.103 116 62 2 9 122 2 115 6.26e-24 92.8
MS.gene042644.t1 MTR_1g063160 43.396 106 58 2 9 112 2 107 1.84e-23 91.3
MS.gene042644.t1 MTR_8g046350 50.649 77 38 0 9 85 2 78 5.53e-22 87.0
MS.gene042644.t1 MTR_1g054265 48.101 79 41 0 9 87 2 80 8.71e-22 86.7
MS.gene042644.t1 MTR_4g094632 37.795 127 70 3 9 128 2 126 2.01e-21 85.5
MS.gene042644.t1 MTR_4g094638 52.174 69 33 0 9 77 2 70 6.17e-19 79.7
MS.gene042644.t1 MTR_8g033270 51.899 79 37 1 9 86 2 80 1.28e-18 80.5
MS.gene042644.t1 MTR_3g005530 52.941 68 32 0 9 76 2 69 1.66e-18 79.7
MS.gene042644.t1 MTR_4g102530 49.315 73 37 0 10 82 3 75 5.25e-18 77.8
MS.gene042644.t1 MTR_1g053070 39.344 122 49 2 9 105 2 123 5.49e-18 78.6
MS.gene042644.t1 MTR_4g093970 56.061 66 29 0 10 75 29 94 5.79e-18 78.6
MS.gene042644.t1 MTR_3g452380 48.000 75 39 0 2 76 10 84 1.18e-17 77.8
MS.gene042644.t1 MTR_4g084740 40.458 131 63 4 9 125 2 131 1.44e-17 78.6
MS.gene042644.t1 MTR_5g066180 50.704 71 35 0 9 79 2 72 1.45e-17 77.0
MS.gene042644.t1 MTR_4g109830 52.174 69 32 1 9 76 2 70 2.07e-17 76.6
MS.gene042644.t1 MTR_0003s0590 54.412 68 31 0 9 76 2 69 3.75e-17 76.6
MS.gene042644.t1 MTR_7g075870 53.731 67 31 0 10 76 3 69 6.92e-17 75.1
MS.gene042644.t1 MTR_1g101970 52.941 68 32 0 9 76 2 69 1.08e-16 73.9
MS.gene042644.t1 MTR_8g087860 51.471 68 33 0 9 76 18 85 1.09e-16 75.1
MS.gene042644.t1 MTR_6g464720 52.174 69 32 1 9 76 2 70 2.40e-16 74.3
MS.gene042644.t1 MTR_2g017865 51.471 68 33 0 9 76 17 84 2.52e-16 74.3
MS.gene042644.t1 MTR_8g033220 49.296 71 36 0 10 80 3 73 2.55e-16 73.6
MS.gene042644.t1 MTR_8g033220 49.296 71 36 0 10 80 3 73 2.63e-16 73.9
MS.gene042644.t1 MTR_2g009890 46.053 76 41 0 9 84 2 77 2.81e-16 74.3
MS.gene042644.t1 MTR_6g015975 52.174 69 32 1 9 76 2 70 6.17e-16 73.2
MS.gene042644.t1 MTR_5g032150 50.746 67 33 0 10 76 3 69 6.55e-16 72.8
MS.gene042644.t1 MTR_5g032520 50.746 67 33 0 10 76 3 69 8.18e-16 72.4
MS.gene042644.t1 MTR_7g016600 52.174 69 32 1 9 76 2 70 8.81e-16 72.8
MS.gene042644.t1 MTR_5g031000 48.529 68 35 0 9 76 2 69 1.02e-15 72.0
MS.gene042644.t1 MTR_5g031000 48.529 68 35 0 9 76 2 69 1.06e-15 72.4
MS.gene042644.t1 MTR_5g021270 51.429 70 32 1 9 76 2 71 1.09e-15 72.0
MS.gene042644.t1 MTR_8g022970 31.481 162 86 3 10 159 19 167 1.14e-15 71.2
MS.gene042644.t1 MTR_5g021270 51.429 70 32 1 9 76 2 71 1.17e-15 72.0
MS.gene042644.t1 MTR_7g075870 52.941 68 31 1 10 76 3 70 1.17e-15 71.6
MS.gene042644.t1 MTR_1g029670 33.775 151 76 5 9 157 2 130 1.29e-15 70.9
MS.gene042644.t1 MTR_8g066260 47.826 69 35 1 9 76 2 70 1.72e-15 71.6
MS.gene042644.t1 MTR_3g102570 51.429 70 33 1 9 77 2 71 1.82e-15 72.8
MS.gene042644.t1 MTR_5g046790 47.826 69 35 1 9 76 2 70 2.12e-15 70.9
MS.gene042644.t1 MTR_7g016630 45.833 72 38 1 9 79 2 73 2.23e-15 71.6
MS.gene042644.t1 MTR_2g461710 55.357 56 25 0 9 64 2 57 2.93e-15 67.0
MS.gene042644.t1 MTR_1g038300 33.333 156 70 5 9 130 2 157 3.51e-15 70.9
MS.gene042644.t1 MTR_5g046870 50.725 69 33 1 9 76 2 70 4.07e-15 68.2
MS.gene042644.t1 MTR_3g088615 45.714 70 36 1 9 76 2 71 5.46e-15 69.3
MS.gene042644.t1 MTR_7g075850 47.561 82 40 2 9 87 2 83 7.07e-15 70.5
MS.gene042644.t1 MTR_3g109930 33.108 148 85 4 17 159 12 150 1.46e-14 68.2
MS.gene042644.t1 MTR_5g066960 49.153 59 30 0 9 67 2 60 2.54e-14 64.3
MS.gene042644.t1 MTR_3g113030 49.206 63 32 0 9 71 2 64 3.55e-14 68.2
MS.gene042644.t1 MTR_4g109810 55.357 56 25 0 9 64 2 57 5.82e-14 67.8
MS.gene042644.t1 MTR_3g437790 31.690 142 82 4 26 159 30 164 6.01e-14 66.6
MS.gene042644.t1 MTR_8g097090 49.275 69 34 1 9 76 2 70 7.44e-14 67.4
MS.gene042644.t1 MTR_3g084980 55.357 56 25 0 9 64 2 57 8.26e-14 67.4
MS.gene042644.t1 MTR_4g036050 29.054 148 88 3 10 156 3 134 1.30e-13 65.5
MS.gene042644.t1 MTR_4g036050 29.054 148 88 3 10 156 3 134 1.36e-13 65.9
MS.gene042644.t1 MTR_4g036050 28.859 149 89 3 9 156 2 134 1.44e-13 65.9
MS.gene042644.t1 MTR_4g036050 28.859 149 89 3 9 156 2 134 1.52e-13 65.9
MS.gene042644.t1 MTR_4g051538 39.326 89 54 0 1 89 1 89 4.83e-13 65.1
MS.gene042644.t1 MTR_4g093030 41.667 84 33 2 9 76 2 85 1.23e-12 62.8
MS.gene042644.t1 MTR_4g108720 34.711 121 72 4 9 125 2 119 1.88e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene042644.t1 AT5G60440 53.086 162 73 2 5 163 3 164 1.10e-54 175
MS.gene042644.t1 AT2G24840 46.914 162 73 3 9 163 63 218 4.53e-42 141
MS.gene042644.t1 AT1G01530 46.250 160 83 2 4 162 2 159 5.76e-38 130
MS.gene042644.t1 AT1G65360 45.283 159 84 2 5 162 3 159 1.48e-36 126
MS.gene042644.t1 AT4G36590 41.975 162 88 2 5 160 3 164 9.39e-34 119
MS.gene042644.t1 AT3G04100 35.119 168 93 5 2 159 7 168 8.12e-28 103
MS.gene042644.t1 AT1G72350 60.274 73 27 1 9 81 43 113 1.88e-22 90.1
MS.gene042644.t1 AT2G34440 52.113 71 34 0 9 79 2 72 3.26e-22 88.2
MS.gene042644.t1 AT1G28460 33.125 160 101 3 5 161 4 160 2.37e-21 86.3
MS.gene042644.t1 AT3G66656 54.412 68 31 0 9 76 2 69 2.70e-21 85.9
MS.gene042644.t1 AT2G45650 57.353 68 29 0 9 76 2 69 1.12e-19 83.2
MS.gene042644.t1 AT2G45660 55.882 68 30 0 10 77 3 70 2.42e-19 80.1
MS.gene042644.t1 AT5G51870 55.556 72 32 0 5 76 21 92 3.04e-19 80.9
MS.gene042644.t1 AT2G45660 55.882 68 30 0 10 77 3 70 7.32e-19 80.5
MS.gene042644.t1 AT5G51870 56.716 67 29 0 10 76 3 69 1.69e-18 78.6
MS.gene042644.t1 AT4G22950 49.315 73 37 0 10 82 3 75 2.28e-18 78.2
MS.gene042644.t1 AT5G51870 56.716 67 29 0 10 76 3 69 2.39e-18 79.0
MS.gene042644.t1 AT1G29962 30.864 162 105 4 5 161 4 163 2.51e-18 78.2
MS.gene042644.t1 AT4G09960 51.471 68 33 0 9 76 2 69 3.51e-18 78.6
MS.gene042644.t1 AT5G51870 55.714 70 31 0 7 76 10 79 3.65e-18 79.0
MS.gene042644.t1 AT4G09960 51.471 68 33 0 9 76 3 70 4.24e-18 78.6
MS.gene042644.t1 AT4G09960 51.471 68 33 0 9 76 2 69 4.25e-18 78.6
MS.gene042644.t1 AT5G51870 56.716 67 29 0 10 76 3 69 4.62e-18 78.2
MS.gene042644.t1 AT4G09960 51.471 68 33 0 9 76 12 79 5.27e-18 78.6
MS.gene042644.t1 AT4G22950 50.704 71 35 0 10 80 3 73 8.04e-18 77.8
MS.gene042644.t1 AT4G22950 50.704 71 35 0 10 80 3 73 8.04e-18 77.8
MS.gene042644.t1 AT4G09960 51.471 68 33 0 9 76 28 95 8.97e-18 78.2
MS.gene042644.t1 AT3G57230 50.000 68 34 0 9 76 2 69 1.15e-17 75.5
MS.gene042644.t1 AT5G62165 53.731 67 31 0 10 76 3 69 1.21e-17 74.3
MS.gene042644.t1 AT5G62165 53.731 67 31 0 10 76 3 69 1.76e-17 75.5
MS.gene042644.t1 AT5G62165 53.731 67 31 0 10 76 3 69 1.76e-17 75.5
MS.gene042644.t1 AT5G62165 53.731 67 31 0 10 76 3 69 1.76e-17 75.5
MS.gene042644.t1 AT4G09960 51.471 68 33 0 9 76 97 164 1.81e-17 78.6
MS.gene042644.t1 AT3G57390 54.412 68 31 0 9 76 2 69 2.54e-17 76.6
MS.gene042644.t1 AT5G62165 53.731 67 31 0 10 76 3 69 2.59e-17 74.7
MS.gene042644.t1 AT5G62165 53.731 67 31 0 10 76 3 69 2.59e-17 74.7
MS.gene042644.t1 AT5G62165 53.731 67 31 0 10 76 3 69 2.59e-17 74.7
MS.gene042644.t1 AT5G62165 53.731 67 31 0 10 76 3 69 2.59e-17 74.7
MS.gene042644.t1 AT5G62165 53.731 67 31 0 10 76 3 69 2.59e-17 74.7
MS.gene042644.t1 AT2G22540 34.783 161 87 5 10 169 3 146 2.90e-17 76.6
MS.gene042644.t1 AT2G22540 34.783 161 87 5 10 169 3 146 2.90e-17 76.6
MS.gene042644.t1 AT1G28450 29.586 169 109 4 5 163 4 172 2.94e-17 75.5
MS.gene042644.t1 AT5G13790 52.941 68 32 0 9 76 2 69 4.09e-17 76.6
MS.gene042644.t1 AT5G13790 52.941 68 32 0 9 76 2 69 4.28e-17 76.6
MS.gene042644.t1 AT3G57230 50.000 68 34 0 9 76 2 69 4.76e-17 75.9
MS.gene042644.t1 AT3G57230 50.000 68 34 0 9 76 2 69 4.76e-17 75.9
MS.gene042644.t1 AT3G57390 54.412 68 31 0 9 76 2 69 4.82e-17 76.3
MS.gene042644.t1 AT5G62165 53.731 67 31 0 10 76 3 69 5.60e-17 75.1
MS.gene042644.t1 AT5G62165 53.731 67 31 0 10 76 3 69 5.60e-17 75.1
MS.gene042644.t1 AT4G37940 51.471 68 33 0 9 76 2 69 6.49e-17 75.1
MS.gene042644.t1 AT4G37940 51.471 68 33 0 9 76 2 69 6.64e-17 75.5
MS.gene042644.t1 AT5G62165 53.731 67 31 0 10 76 3 69 6.72e-17 75.1
MS.gene042644.t1 AT5G62165 53.731 67 31 0 10 76 3 69 6.72e-17 75.1
MS.gene042644.t1 AT5G62165 53.731 67 31 0 10 76 3 69 6.72e-17 75.1
MS.gene042644.t1 AT4G37940 51.471 68 33 0 9 76 2 69 6.88e-17 74.3
MS.gene042644.t1 AT5G23260 47.727 88 40 2 5 86 14 101 7.15e-17 75.9
MS.gene042644.t1 AT5G23260 47.727 88 40 2 5 86 14 101 7.36e-17 75.9
MS.gene042644.t1 AT4G18960 49.333 75 38 0 2 76 11 85 7.49e-17 75.9
MS.gene042644.t1 AT2G42830 51.471 68 33 0 9 76 17 84 1.17e-16 75.1
MS.gene042644.t1 AT2G42830 51.471 68 33 0 9 76 17 84 1.20e-16 75.1
MS.gene042644.t1 AT3G61120 52.941 68 32 0 9 76 2 69 1.27e-16 75.1
MS.gene042644.t1 AT5G51860 53.731 67 31 0 10 76 3 69 1.36e-16 73.9
MS.gene042644.t1 AT5G10140 48.611 72 36 1 9 79 2 73 1.38e-16 73.2
MS.gene042644.t1 AT3G58780 51.471 68 33 0 9 76 17 84 1.60e-16 74.7
MS.gene042644.t1 AT3G58780 51.471 68 33 0 9 76 23 90 1.65e-16 74.7
MS.gene042644.t1 AT5G51860 53.731 67 31 0 10 76 3 69 2.00e-16 73.9
MS.gene042644.t1 AT3G30260 31.724 145 69 4 9 123 2 146 2.08e-16 74.3
MS.gene042644.t1 AT5G10140 48.611 72 36 1 9 79 2 73 2.09e-16 73.2
MS.gene042644.t1 AT4G24540 52.941 68 32 0 9 76 2 69 2.12e-16 73.9
MS.gene042644.t1 AT3G54340 50.000 70 33 1 9 76 2 71 2.19e-16 73.9
MS.gene042644.t1 AT5G23260 48.810 84 37 2 9 86 2 85 2.30e-16 74.3
MS.gene042644.t1 AT5G23260 48.810 84 37 2 9 86 2 85 2.45e-16 73.9
MS.gene042644.t1 AT5G10140 48.611 72 36 1 9 79 2 73 2.56e-16 73.2
MS.gene042644.t1 AT3G58780 50.704 71 35 0 6 76 14 84 3.14e-16 74.3
MS.gene042644.t1 AT5G10140 48.611 72 36 1 9 79 2 73 3.30e-16 72.8
MS.gene042644.t1 AT1G77980 53.521 71 32 1 9 78 2 72 3.71e-16 74.7
MS.gene042644.t1 AT5G60910 49.275 69 34 1 9 76 2 70 6.63e-16 73.2
MS.gene042644.t1 AT1G26310 49.275 69 34 1 9 76 2 70 7.26e-16 73.2
MS.gene042644.t1 AT4G11880 50.000 72 35 1 10 80 3 74 7.49e-16 71.6
MS.gene042644.t1 AT4G11880 50.000 72 35 1 10 80 3 74 7.49e-16 71.6
MS.gene042644.t1 AT1G77950 49.296 71 35 1 9 78 2 72 9.50e-16 72.8
MS.gene042644.t1 AT1G77950 49.296 71 35 1 9 78 2 72 9.50e-16 72.8
MS.gene042644.t1 AT1G77950 49.296 71 35 1 9 78 2 72 9.50e-16 72.8
MS.gene042644.t1 AT1G77950 49.296 71 35 1 9 78 2 72 9.50e-16 72.8
MS.gene042644.t1 AT2G22630 50.000 68 34 0 9 76 2 69 9.71e-16 72.4
MS.gene042644.t1 AT2G22630 50.000 68 34 0 9 76 2 69 9.71e-16 72.4
MS.gene042644.t1 AT1G22130 40.541 111 62 2 9 115 2 112 1.08e-15 73.6
MS.gene042644.t1 AT4G11880 50.000 72 35 1 10 80 3 74 1.14e-15 72.0
MS.gene042644.t1 AT4G11880 50.000 72 35 1 10 80 3 74 1.14e-15 72.0
MS.gene042644.t1 AT2G14210 49.275 69 34 1 9 76 2 70 2.24e-15 71.6
MS.gene042644.t1 AT5G15800 52.174 69 32 1 9 76 2 70 2.27e-15 71.6
MS.gene042644.t1 AT1G69120 46.377 69 36 1 9 76 2 70 2.51e-15 71.2
MS.gene042644.t1 AT2G14210 49.275 69 34 1 9 76 2 70 2.94e-15 71.2
MS.gene042644.t1 AT1G17310 56.757 74 30 1 8 81 47 118 3.34e-15 70.9
MS.gene042644.t1 AT5G15800 52.174 69 32 1 9 76 2 70 3.85e-15 71.2
MS.gene042644.t1 AT5G65050 47.826 69 35 1 9 76 2 70 4.29e-15 69.7
MS.gene042644.t1 AT1G69120 46.377 69 36 1 9 76 2 70 4.59e-15 70.9
MS.gene042644.t1 AT1G17310 56.757 74 30 1 8 81 58 129 4.84e-15 70.5
MS.gene042644.t1 AT2G03710 51.429 70 32 2 9 76 2 71 5.35e-15 69.7
MS.gene042644.t1 AT5G20240 48.571 70 34 1 9 76 2 71 5.63e-15 68.6
MS.gene042644.t1 AT1G71692 49.275 69 34 1 10 77 3 71 6.40e-15 69.7
MS.gene042644.t1 AT2G22540 34.161 161 83 6 10 169 3 141 6.69e-15 70.1
MS.gene042644.t1 AT5G20240 48.571 70 34 1 9 76 2 71 9.14e-15 69.3
MS.gene042644.t1 AT5G65050 47.826 69 35 1 9 76 2 70 1.08e-14 68.9
MS.gene042644.t1 AT5G65050 47.826 69 35 1 9 76 2 70 1.14e-14 68.6
MS.gene042644.t1 AT5G65050 47.826 69 35 1 9 76 2 70 1.32e-14 68.6
MS.gene042644.t1 AT2G03710 50.000 70 33 1 9 76 2 71 1.47e-14 69.7
MS.gene042644.t1 AT2G03710 50.000 70 33 1 9 76 2 71 1.53e-14 69.7
MS.gene042644.t1 AT3G02310 47.826 69 35 1 9 76 2 70 3.00e-14 67.8
MS.gene042644.t1 AT5G65060 47.826 69 35 1 9 76 2 70 3.83e-14 67.4
MS.gene042644.t1 AT5G65060 47.826 69 35 1 9 76 2 70 4.34e-14 67.4
MS.gene042644.t1 AT5G65060 47.826 69 35 1 9 76 2 70 4.48e-14 67.0
MS.gene042644.t1 AT1G24260 57.143 56 24 0 9 64 2 57 5.68e-14 67.8
MS.gene042644.t1 AT1G24260 57.143 56 24 0 9 64 2 57 5.99e-14 67.8
MS.gene042644.t1 AT1G24260 57.143 56 24 0 9 64 2 57 6.18e-14 67.8
MS.gene042644.t1 AT5G65070 41.250 80 43 2 9 87 2 78 8.82e-14 65.5
MS.gene042644.t1 AT3G58780 53.448 58 27 0 9 66 17 74 9.25e-14 67.0
MS.gene042644.t1 AT1G47760 33.913 115 66 2 9 115 2 114 9.81e-14 66.2
MS.gene042644.t1 AT3G02310 47.826 69 35 1 9 76 2 70 1.12e-13 67.0
MS.gene042644.t1 AT3G58780 53.333 60 28 0 6 65 14 73 1.37e-13 67.0
MS.gene042644.t1 AT4G37435 36.842 95 55 2 9 98 2 96 2.12e-13 65.5
MS.gene042644.t1 AT5G65070 43.478 69 38 1 9 76 2 70 2.48e-13 65.5
MS.gene042644.t1 AT5G65070 43.478 69 38 1 9 76 2 70 5.24e-13 65.1
MS.gene042644.t1 AT5G65070 43.478 69 38 1 9 76 2 70 8.06e-13 64.3
MS.gene042644.t1 AT5G65080 31.429 140 68 4 9 123 9 145 1.52e-12 63.2
MS.gene042644.t1 AT5G65070 49.123 57 29 0 9 65 2 58 2.39e-12 63.2
MS.gene042644.t1 AT5G49490 40.909 88 45 2 5 85 41 128 5.22e-12 62.8
MS.gene042644.t1 AT5G49420 32.353 136 61 4 5 136 3 111 6.49e-12 62.8
MS.gene042644.t1 AT1G46408 45.455 77 38 2 10 82 5 81 7.05e-12 62.4
MS.gene042644.t1 AT2G03060 31.073 177 101 9 9 168 2 174 7.29e-12 62.8
MS.gene042644.t1 AT2G03060 31.073 177 101 9 9 168 2 174 8.51e-12 62.8
MS.gene042644.t1 AT2G03060 31.073 177 101 9 9 168 2 174 8.51e-12 62.8
MS.gene042644.t1 AT2G03060 31.073 177 101 9 9 168 2 174 8.51e-12 62.8
MS.gene042644.t1 AT1G18750 40.260 77 43 2 9 83 2 77 1.22e-11 62.4
MS.gene042644.t1 AT2G26320 40.541 74 42 1 5 76 14 87 1.23e-11 58.9
MS.gene042644.t1 AT1G18750 40.260 77 43 2 9 83 2 77 1.34e-11 62.0
MS.gene042644.t1 AT5G38620 32.331 133 57 4 10 136 6 111 1.39e-11 62.0
MS.gene042644.t1 AT1G18750 40.260 77 43 2 9 83 2 77 1.41e-11 62.0
MS.gene042644.t1 AT5G65080 43.548 62 35 0 1 62 1 62 2.56e-11 60.1
MS.gene042644.t1 AT1G60920 45.882 85 38 5 10 86 5 89 2.82e-11 59.7

Find 32 sgRNAs with CRISPR-Local

Find 38 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCGCATGATGTCATCATTT+TGG 0.158385 5.2:-46397401 None:intergenic
TCTATGACCGTTTCAACATT+TGG 0.298799 5.2:-46397354 None:intergenic
TGCTGATAAGGTTGAAATCT+AGG 0.351465 5.2:+46397650 MS.gene042644:CDS
TGAATCATTCAAGAAGGCTT+TGG 0.361264 5.2:+46397599 MS.gene042644:CDS
CTATGACCGTTTCAACATTT+GGG 0.365857 5.2:-46397353 None:intergenic
GGTGGACTTGTCCATTTGAT+AGG 0.370680 5.2:+46397559 MS.gene042644:CDS
CCCCGTTATTCTTTCGCAGT+TGG 0.393777 5.2:-46397527 None:intergenic
GCCAACTGCGAAAGAATAAC+GGG 0.412211 5.2:+46397526 MS.gene042644:CDS
TAGCAATGAACGCAACCTTC+AGG 0.413542 5.2:+46397209 MS.gene042644:CDS
AGTGAGCTTTGCACCCTTTG+TGG 0.424656 5.2:+46397273 MS.gene042644:CDS
ACAAAATTCATCCTATCAAA+TGG 0.436863 5.2:-46397570 None:intergenic
TGTTGCACATTATGCTGATA+AGG 0.451161 5.2:+46397638 MS.gene042644:CDS
CCTTCTTGAATGATTCAAGT+TGG 0.473474 5.2:-46397593 None:intergenic
CCAACTTGAATCATTCAAGA+AGG 0.481167 5.2:+46397593 MS.gene042644:CDS
CATAGATCGTTATCTCTCTC+AGG 0.489608 5.2:+46397371 MS.gene042644:CDS
ATCATTCAAGAAGGCTTTGG+AGG 0.496315 5.2:+46397602 MS.gene042644:CDS
AGCCAACTGCGAAAGAATAA+CGG 0.500112 5.2:+46397525 MS.gene042644:CDS
TGGTCACCCAAATGTTGAAA+CGG 0.524927 5.2:+46397347 MS.gene042644:CDS
AGCGATATATGCACCACAAA+GGG 0.537976 5.2:-46397286 None:intergenic
GCTCGCGCACACTAGCATTA+CGG 0.539420 5.2:-46397437 None:intergenic
GCTGATAAGGTTGAAATCTA+GGG 0.554774 5.2:+46397651 MS.gene042644:CDS
ACTTTCTCAAAGCGCCGTAG+TGG 0.560981 5.2:+46397234 MS.gene042644:CDS
CTTTCTCAAAGCGCCGTAGT+GGG 0.568304 5.2:+46397235 MS.gene042644:CDS
AATGAAAAGACCTTCTCACT+AGG 0.596511 5.2:-46397324 None:intergenic
TGACATCATGCGATTCATAG+AGG 0.604612 5.2:+46397410 MS.gene042644:CDS
TATATTCTCACCTAGTGAGA+AGG 0.609022 5.2:+46397314 MS.gene042644:CDS
CTTTCTTGAAGAGCCCACTA+CGG 0.627906 5.2:-46397248 None:intergenic
GCTTTGAGAAAGTCACCTGA+AGG 0.631860 5.2:-46397224 None:intergenic
GAGCGATATATGCACCACAA+AGG 0.634962 5.2:-46397287 None:intergenic
GTTGGCTCAGATCATTCGCA+CGG 0.646465 5.2:-46397509 None:intergenic
TGTGCTTTAACCATGTCGAG+CGG 0.692771 5.2:+46397144 None:intergenic
CCAACTGCGAAAGAATAACG+GGG 0.752571 5.2:+46397527 MS.gene042644:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! ACAAAATTCATCCTATCAAA+TGG - chr5.2:46397573-46397592 None:intergenic 25.0%
!!! TCTTTTTCATCTCAATCTTT+TGG - chr5.2:46397188-46397207 None:intergenic 25.0%
AATGAAAAGACCTTCTCACT+AGG - chr5.2:46397327-46397346 None:intergenic 35.0%
CCAACTTGAATCATTCAAGA+AGG + chr5.2:46397593-46397612 MS.gene042644:CDS 35.0%
CCTTCTTGAATGATTCAAGT+TGG - chr5.2:46397596-46397615 None:intergenic 35.0%
CTATGACCGTTTCAACATTT+GGG - chr5.2:46397356-46397375 None:intergenic 35.0%
TATATTCTCACCTAGTGAGA+AGG + chr5.2:46397314-46397333 MS.gene042644:CDS 35.0%
TCTATGACCGTTTCAACATT+TGG - chr5.2:46397357-46397376 None:intergenic 35.0%
TGAATCATTCAAGAAGGCTT+TGG + chr5.2:46397599-46397618 MS.gene042644:CDS 35.0%
TGTTGCACATTATGCTGATA+AGG + chr5.2:46397638-46397657 MS.gene042644:CDS 35.0%
! AGTGAGAAGGTCTTTTCATT+TGG + chr5.2:46397327-46397346 MS.gene042644:CDS 35.0%
! ATCGCATGATGTCATCATTT+TGG - chr5.2:46397404-46397423 None:intergenic 35.0%
! TCGCATGATGTCATCATTTT+GGG - chr5.2:46397403-46397422 None:intergenic 35.0%
!! AGAATAACGGGGCTAATTTT+TGG + chr5.2:46397538-46397557 MS.gene042644:CDS 35.0%
AGCCAACTGCGAAAGAATAA+CGG + chr5.2:46397525-46397544 MS.gene042644:CDS 40.0%
AGCGATATATGCACCACAAA+GGG - chr5.2:46397289-46397308 None:intergenic 40.0%
CATAGATCGTTATCTCTCTC+AGG + chr5.2:46397371-46397390 MS.gene042644:CDS 40.0%
TCGAGCGGAAAAAAAACTCA+AGG + chr5.2:46397159-46397178 MS.gene042644:CDS 40.0%
TGACATCATGCGATTCATAG+AGG + chr5.2:46397410-46397429 MS.gene042644:CDS 40.0%
TGGTCACCCAAATGTTGAAA+CGG + chr5.2:46397347-46397366 MS.gene042644:CDS 40.0%
! ATCATTCAAGAAGGCTTTGG+AGG + chr5.2:46397602-46397621 MS.gene042644:CDS 40.0%
! CGCATGATGTCATCATTTTG+GGG - chr5.2:46397402-46397421 None:intergenic 40.0%
!! ATAACGGGGCTAATTTTTGG+TGG + chr5.2:46397541-46397560 MS.gene042644:CDS 40.0%
!! ATGATGTCATCATTTTGGGG+TGG - chr5.2:46397399-46397418 None:intergenic 40.0%
!!! TGATGTCATCATTTTGGGGT+GGG - chr5.2:46397398-46397417 None:intergenic 40.0%
CCAACTGCGAAAGAATAACG+GGG + chr5.2:46397527-46397546 MS.gene042644:CDS 45.0%
CTTTCTTGAAGAGCCCACTA+CGG - chr5.2:46397251-46397270 None:intergenic 45.0%
GAGCGATATATGCACCACAA+AGG - chr5.2:46397290-46397309 None:intergenic 45.0%
GCCAACTGCGAAAGAATAAC+GGG + chr5.2:46397526-46397545 MS.gene042644:CDS 45.0%
TAGCAATGAACGCAACCTTC+AGG + chr5.2:46397209-46397228 MS.gene042644:CDS 45.0%
! GGTGGACTTGTCCATTTGAT+AGG + chr5.2:46397559-46397578 MS.gene042644:CDS 45.0%
!! GCTTTGAGAAAGTCACCTGA+AGG - chr5.2:46397227-46397246 None:intergenic 45.0%
AGTGAGCTTTGCACCCTTTG+TGG + chr5.2:46397273-46397292 MS.gene042644:CDS 50.0%
CCCCGTTATTCTTTCGCAGT+TGG - chr5.2:46397530-46397549 None:intergenic 50.0%
! GTTGGCTCAGATCATTCGCA+CGG - chr5.2:46397512-46397531 None:intergenic 50.0%
!! ACTTTCTCAAAGCGCCGTAG+TGG + chr5.2:46397234-46397253 MS.gene042644:CDS 50.0%
!! CTTTCTCAAAGCGCCGTAGT+GGG + chr5.2:46397235-46397254 MS.gene042644:CDS 50.0%
GCTCGCGCACACTAGCATTA+CGG - chr5.2:46397440-46397459 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 46397156 46397671 46397156 ID=MS.gene042644
chr5.2 mRNA 46397156 46397671 46397156 ID=MS.gene042644.t1;Parent=MS.gene042644
chr5.2 exon 46397156 46397671 46397156 ID=MS.gene042644.t1.exon1;Parent=MS.gene042644.t1
chr5.2 CDS 46397156 46397671 46397156 ID=cds.MS.gene042644.t1;Parent=MS.gene042644.t1
Gene Sequence

>MS.gene042644

ATGTCGAGCGGAAAAAAAACTCAAGGTCGCCAAAAGATTGAGATGAAAAAGATTAGCAATGAACGCAACCTTCAGGTGACTTTCTCAAAGCGCCGTAGTGGGCTCTTCAAGAAAGCTAGTGAGCTTTGCACCCTTTGTGGTGCATATATCGCTCTAATTATATTCTCACCTAGTGAGAAGGTCTTTTCATTTGGTCACCCAAATGTTGAAACGGTCATAGATCGTTATCTCTCTCAGGTCCCACCCCAAAATGATGACATCATGCGATTCATAGAGGCTTACCGTAATGCTAGTGTGCGCGAGCTCAATGATCTATTGACTCGTATGAAAGATGCATTAGACATCAACAAGAACCGTGCGAATGATCTGAGCCAACTGCGAAAGAATAACGGGGCTAATTTTTGGTGGACTTGTCCATTTGATAGGATGAATTTTGTCCAACTTGAATCATTCAAGAAGGCTTTGGAGGATCTTAAAAAACTTGTTGCACATTATGCTGATAAGGTTGAAATCTAG
Protein sequence

>MS.gene042644.t1

MSSGKKTQGRQKIEMKKISNERNLQVTFSKRRSGLFKKASELCTLCGAYIALIIFSPSEKVFSFGHPNVETVIDRYLSQVPPQNDDIMRFIEAYRNASVRELNDLLTRMKDALDINKNRANDLSQLRKNNGANFWWTCPFDRMNFVQLESFKKALEDLKKLVAHYADKVEI