AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene042679

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene042679.t1 MTR_5g053390 92.000 225 18 0 1 225 1 225 4.06e-155 430
MS.gene042679.t1 MTR_2g085280 72.458 236 65 0 1 236 1 236 1.08e-124 353
MS.gene042679.t1 MTR_2g085250 72.458 236 65 0 1 236 1 236 4.11e-124 352
MS.gene042679.t1 MTR_5g055100 72.034 236 66 0 1 236 1 236 4.20e-123 349
MS.gene042679.t1 MTR_5g045560 75.546 229 56 0 1 229 1 229 3.79e-122 347
MS.gene042679.t1 MTR_8g043650 66.094 233 79 0 1 233 1 233 3.18e-111 319
MS.gene042679.t1 MTR_1g075600 68.889 225 70 0 1 225 1 225 4.34e-109 313
MS.gene042679.t1 MTR_1g077360 66.667 225 75 0 1 225 1 225 4.35e-105 303
MS.gene042679.t1 MTR_1g105910 63.556 225 82 0 1 225 1 225 5.48e-103 298
MS.gene042679.t1 MTR_1g105920 66.216 222 75 0 1 222 1 222 1.27e-101 295
MS.gene042679.t1 MTR_2g030740 65.315 222 77 0 1 222 1 222 1.05e-100 292
MS.gene042679.t1 MTR_1g012570 64.865 222 78 0 1 222 1 222 1.04e-96 282
MS.gene042679.t1 MTR_0121s0080 59.657 233 93 1 1 233 1 232 4.80e-94 275
MS.gene042679.t1 MTR_3g030770 61.277 235 73 3 1 225 1 227 5.09e-94 275
MS.gene042679.t1 MTR_1g108510 61.277 235 73 3 1 225 1 227 9.50e-94 275
MS.gene042679.t1 MTR_3g052920 62.100 219 83 0 1 219 1 219 1.88e-93 274
MS.gene042679.t1 MTR_2g093190 61.702 235 72 3 1 225 1 227 1.23e-92 271
MS.gene042679.t1 MTR_1g105905 59.722 216 87 0 18 233 1 216 1.51e-90 266
MS.gene042679.t1 MTR_1g108580 57.872 235 81 3 1 225 1 227 3.69e-86 255
MS.gene042679.t1 MTR_3g052870 58.904 219 71 2 1 219 1 200 5.37e-82 244
MS.gene042679.t1 MTR_1g106070 64.835 182 64 0 1 182 1 182 3.55e-79 236
MS.gene042679.t1 MTR_7g062350 53.448 232 105 2 7 236 17 247 2.78e-78 236
MS.gene042679.t1 MTR_1g075570 58.989 178 59 1 18 195 1 164 1.02e-59 186
MS.gene042679.t1 MTR_3g080940 44.724 199 106 1 1 195 1 199 3.15e-52 168
MS.gene042679.t1 MTR_0121s0100 64.341 129 46 0 1 129 1 129 4.62e-50 160
MS.gene042679.t1 MTR_3g030780 61.290 124 48 0 1 124 1 124 2.53e-46 150
MS.gene042679.t1 MTR_3g067910 62.963 108 40 0 21 128 2 109 5.77e-40 134
MS.gene042679.t1 MTR_8g086290 38.037 163 97 2 5 167 8 166 3.07e-30 110
MS.gene042679.t1 MTR_2g105290 36.095 169 102 2 5 172 8 171 2.88e-29 108
MS.gene042679.t1 MTR_3g067875 87.500 56 7 0 18 73 1 56 2.47e-27 100
MS.gene042679.t1 MTR_7g028448 39.355 155 82 2 5 159 8 150 9.10e-27 101
MS.gene042679.t1 MTR_4g036915 39.355 155 82 2 5 159 8 150 9.10e-27 101
MS.gene042679.t1 MTR_8g051580 41.221 131 65 3 9 128 2 131 1.71e-23 93.6
MS.gene042679.t1 MTR_1g047550 54.930 71 32 0 9 79 2 72 1.08e-22 91.3
MS.gene042679.t1 MTR_8g079502 54.930 71 32 0 9 79 2 72 1.63e-22 90.9
MS.gene042679.t1 MTR_4g127140 35.912 181 102 4 5 175 8 184 2.31e-22 90.9
MS.gene042679.t1 MTR_3g067870 68.750 64 20 0 16 79 83 146 4.33e-22 89.4
MS.gene042679.t1 MTR_1g063160 42.453 106 57 2 9 111 2 106 1.32e-21 88.6
MS.gene042679.t1 MTR_3g067915 49.462 93 47 0 33 125 3 95 1.96e-21 85.9
MS.gene042679.t1 MTR_1g054265 53.623 69 32 0 9 77 2 70 1.06e-20 85.9
MS.gene042679.t1 MTR_1g108500 52.083 96 25 1 22 117 110 184 1.43e-20 89.0
MS.gene042679.t1 MTR_4g131030 50.704 71 35 0 9 79 2 72 2.77e-20 85.9
MS.gene042679.t1 MTR_8g046350 48.052 77 40 0 9 85 2 78 9.60e-20 83.2
MS.gene042679.t1 MTR_4g094632 36.000 150 79 5 9 158 2 134 1.05e-18 80.5
MS.gene042679.t1 MTR_4g094638 53.623 69 32 0 9 77 2 70 1.32e-17 77.8
MS.gene042679.t1 MTR_4g093970 43.689 103 50 4 10 104 29 131 1.51e-16 76.3
MS.gene042679.t1 MTR_3g437790 34.483 145 74 5 26 159 30 164 1.86e-16 75.1
MS.gene042679.t1 MTR_8g022970 34.641 153 97 2 8 159 17 167 2.36e-16 74.7
MS.gene042679.t1 MTR_0003s0590 42.574 101 43 2 9 94 2 102 5.06e-16 75.1
MS.gene042679.t1 MTR_5g066180 48.529 68 35 0 9 76 2 69 5.19e-16 74.7
MS.gene042679.t1 MTR_3g005530 48.529 68 35 0 9 76 2 69 1.09e-15 73.9
MS.gene042679.t1 MTR_3g452380 44.595 74 41 0 3 76 11 84 2.80e-15 73.2
MS.gene042679.t1 MTR_8g033270 48.101 79 40 1 9 86 2 80 3.17e-15 73.2
MS.gene042679.t1 MTR_7g075870 52.239 67 32 0 10 76 3 69 4.81e-15 71.6
MS.gene042679.t1 MTR_8g033220 31.319 182 96 4 10 173 3 173 5.55e-15 72.0
MS.gene042679.t1 MTR_8g033220 31.319 182 96 4 10 173 3 173 5.96e-15 71.6
MS.gene042679.t1 MTR_4g102530 47.887 71 37 0 10 80 3 73 6.36e-15 71.2
MS.gene042679.t1 MTR_1g053070 51.471 68 33 0 9 76 2 69 8.95e-15 71.6
MS.gene042679.t1 MTR_4g109830 31.395 172 92 6 9 175 2 152 1.46e-14 70.9
MS.gene042679.t1 MTR_5g032150 47.059 68 36 0 9 76 2 69 1.62e-14 70.9
MS.gene042679.t1 MTR_8g087860 47.059 68 36 0 9 76 18 85 2.15e-14 70.5
MS.gene042679.t1 MTR_5g032520 47.059 68 36 0 9 76 2 69 2.27e-14 70.1
MS.gene042679.t1 MTR_2g009890 47.059 68 36 0 9 76 2 69 3.10e-14 70.5
MS.gene042679.t1 MTR_5g031000 47.059 68 36 0 9 76 2 69 5.87e-14 69.3
MS.gene042679.t1 MTR_2g017865 47.059 68 36 0 9 76 17 84 6.23e-14 69.7
MS.gene042679.t1 MTR_5g031000 47.059 68 36 0 9 76 2 69 6.28e-14 68.9
MS.gene042679.t1 MTR_7g075870 51.471 68 32 1 10 76 3 70 8.26e-14 68.6
MS.gene042679.t1 MTR_7g016630 44.928 69 37 1 9 76 2 70 1.19e-13 68.6
MS.gene042679.t1 MTR_3g088615 44.286 70 37 1 9 76 2 71 1.69e-13 67.0
MS.gene042679.t1 MTR_6g464720 47.826 69 35 1 9 76 2 70 2.21e-13 67.8
MS.gene042679.t1 MTR_1g101970 34.694 147 71 4 9 133 2 145 3.27e-13 66.2
MS.gene042679.t1 MTR_1g029670 44.286 70 37 1 9 76 2 71 4.14e-13 65.9
MS.gene042679.t1 MTR_3g109930 36.029 136 79 4 27 159 20 150 4.40e-13 65.9
MS.gene042679.t1 MTR_5g066960 49.123 57 29 0 9 65 2 58 5.03e-13 62.4
MS.gene042679.t1 MTR_6g015975 47.826 69 35 1 9 76 2 70 5.44e-13 66.6
MS.gene042679.t1 MTR_7g016600 47.826 69 35 1 9 76 2 70 7.24e-13 66.2
MS.gene042679.t1 MTR_4g084740 46.479 71 37 1 9 78 2 72 7.74e-13 67.0
MS.gene042679.t1 MTR_5g046790 42.169 83 42 2 9 85 2 84 1.26e-12 65.1
MS.gene042679.t1 MTR_1g038300 31.410 156 73 6 9 130 2 157 1.44e-12 65.5
MS.gene042679.t1 MTR_3g102570 46.479 71 37 1 9 78 2 72 1.74e-12 66.2
MS.gene042679.t1 MTR_8g066260 43.478 69 38 1 9 76 2 70 1.98e-12 65.1
MS.gene042679.t1 MTR_7g075850 42.683 82 44 2 9 87 2 83 4.19e-12 64.3
MS.gene042679.t1 MTR_2g461710 50.000 56 28 0 9 64 2 57 4.96e-12 59.7
MS.gene042679.t1 MTR_5g021270 45.714 70 36 1 9 76 2 71 7.92e-12 63.2
MS.gene042679.t1 MTR_5g021270 45.714 70 36 1 9 76 2 71 8.33e-12 63.2
MS.gene042679.t1 MTR_5g046870 46.377 69 36 1 9 76 2 70 1.69e-11 60.1
MS.gene042679.t1 MTR_8g097090 44.928 69 37 1 9 76 2 70 2.94e-11 61.6
MS.gene042679.t1 MTR_3g084980 43.478 69 38 1 9 76 2 70 3.28e-11 61.6
MS.gene042679.t1 MTR_4g093030 46.774 62 33 0 9 70 2 63 3.63e-11 60.1
MS.gene042679.t1 MTR_3g113030 26.364 220 135 7 9 226 2 196 4.61e-11 61.2
MS.gene042679.t1 MTR_4g051538 30.348 201 108 6 1 185 1 185 7.00e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene042679.t1 AT5G60440 52.695 167 76 2 5 168 3 169 8.07e-53 172
MS.gene042679.t1 AT2G24840 48.447 161 72 3 9 163 63 218 1.12e-41 143
MS.gene042679.t1 AT1G01530 46.584 161 81 4 4 162 2 159 1.37e-37 132
MS.gene042679.t1 AT1G65360 39.056 233 125 6 5 230 3 225 2.27e-36 128
MS.gene042679.t1 AT4G36590 45.122 164 80 4 5 160 3 164 7.99e-35 125
MS.gene042679.t1 AT3G04100 34.356 163 101 4 2 159 7 168 3.95e-23 93.6
MS.gene042679.t1 AT2G34440 35.811 148 93 2 9 156 2 147 7.36e-22 89.0
MS.gene042679.t1 AT3G66656 40.336 119 67 1 9 123 2 120 4.33e-21 87.4
MS.gene042679.t1 AT1G72350 33.553 152 68 2 9 160 43 161 1.89e-20 86.7
MS.gene042679.t1 AT2G45660 54.412 68 31 0 10 77 3 70 2.87e-17 76.6
MS.gene042679.t1 AT1G28460 30.058 173 111 4 5 170 4 173 3.62e-17 77.0
MS.gene042679.t1 AT4G22950 52.239 67 32 0 10 76 3 69 5.57e-17 76.3
MS.gene042679.t1 AT2G45660 54.412 68 31 0 10 77 3 70 6.52e-17 77.0
MS.gene042679.t1 AT4G22950 52.239 67 32 0 10 76 3 69 1.37e-16 76.3
MS.gene042679.t1 AT4G22950 52.239 67 32 0 10 76 3 69 1.37e-16 76.3
MS.gene042679.t1 AT4G37940 52.941 68 32 0 9 76 2 69 1.86e-16 75.9
MS.gene042679.t1 AT4G37940 52.941 68 32 0 9 76 2 69 1.94e-16 75.9
MS.gene042679.t1 AT2G22540 31.481 162 93 4 9 169 2 146 2.46e-16 75.9
MS.gene042679.t1 AT2G22540 31.481 162 93 4 9 169 2 146 2.46e-16 75.9
MS.gene042679.t1 AT4G37940 52.941 68 32 0 9 76 2 69 2.78e-16 74.3
MS.gene042679.t1 AT2G45650 28.959 221 117 6 9 208 2 203 3.00e-16 75.9
MS.gene042679.t1 AT5G51870 55.224 67 30 0 10 76 3 69 3.16e-16 75.1
MS.gene042679.t1 AT5G51870 55.224 67 30 0 10 76 3 69 4.38e-16 73.9
MS.gene042679.t1 AT5G51870 52.778 72 34 0 5 76 21 92 5.63e-16 73.9
MS.gene042679.t1 AT5G51870 55.224 67 30 0 10 76 13 79 5.79e-16 74.7
MS.gene042679.t1 AT5G51870 55.224 67 30 0 10 76 3 69 6.10e-16 74.3
MS.gene042679.t1 AT3G57230 48.529 68 35 0 9 76 2 69 9.39e-16 72.4
MS.gene042679.t1 AT3G57390 52.941 68 32 0 9 76 2 69 1.49e-15 73.6
MS.gene042679.t1 AT2G22630 51.471 68 33 0 9 76 2 69 2.17e-15 73.2
MS.gene042679.t1 AT2G22630 51.471 68 33 0 9 76 2 69 2.17e-15 73.2
MS.gene042679.t1 AT5G62165 50.746 67 33 0 10 76 3 69 2.31e-15 70.1
MS.gene042679.t1 AT3G57230 48.529 68 35 0 9 76 2 69 2.35e-15 73.2
MS.gene042679.t1 AT3G57230 48.529 68 35 0 9 76 2 69 2.35e-15 73.2
MS.gene042679.t1 AT5G62165 50.746 67 33 0 10 76 3 69 2.70e-15 71.2
MS.gene042679.t1 AT5G62165 50.746 67 33 0 10 76 3 69 2.70e-15 71.2
MS.gene042679.t1 AT5G62165 50.746 67 33 0 10 76 3 69 2.70e-15 71.2
MS.gene042679.t1 AT4G09960 47.059 68 36 0 9 76 2 69 2.99e-15 72.4
MS.gene042679.t1 AT4G09960 47.059 68 36 0 9 76 2 69 3.07e-15 72.8
MS.gene042679.t1 AT5G13790 51.471 68 33 0 9 76 2 69 3.25e-15 73.2
MS.gene042679.t1 AT5G13790 51.471 68 33 0 9 76 2 69 3.26e-15 73.2
MS.gene042679.t1 AT4G09960 47.059 68 36 0 9 76 3 70 3.38e-15 72.8
MS.gene042679.t1 AT5G10140 49.275 69 34 1 9 76 2 70 3.49e-15 71.6
MS.gene042679.t1 AT3G57390 52.941 68 32 0 9 76 2 69 3.73e-15 72.8
MS.gene042679.t1 AT5G62165 50.746 67 33 0 10 76 3 69 3.86e-15 70.9
MS.gene042679.t1 AT5G62165 50.746 67 33 0 10 76 3 69 3.86e-15 70.9
MS.gene042679.t1 AT5G62165 50.746 67 33 0 10 76 3 69 3.86e-15 70.9
MS.gene042679.t1 AT5G62165 50.746 67 33 0 10 76 3 69 3.86e-15 70.9
MS.gene042679.t1 AT5G62165 50.746 67 33 0 10 76 3 69 3.86e-15 70.9
MS.gene042679.t1 AT5G10140 49.275 69 34 1 9 76 2 70 4.02e-15 71.2
MS.gene042679.t1 AT4G09960 47.059 68 36 0 9 76 12 79 4.02e-15 72.8
MS.gene042679.t1 AT5G10140 49.275 69 34 1 9 76 2 70 4.32e-15 71.6
MS.gene042679.t1 AT5G62165 50.746 67 33 0 10 76 3 69 4.73e-15 71.6
MS.gene042679.t1 AT5G62165 50.746 67 33 0 10 76 3 69 4.73e-15 71.6
MS.gene042679.t1 AT4G24540 50.000 68 34 0 9 76 2 69 5.40e-15 72.0
MS.gene042679.t1 AT4G09960 47.059 68 36 0 9 76 28 95 5.45e-15 72.4
MS.gene042679.t1 AT3G54340 31.210 157 75 4 9 133 2 157 5.75e-15 72.0
MS.gene042679.t1 AT5G62165 50.746 67 33 0 10 76 3 69 5.80e-15 71.6
MS.gene042679.t1 AT5G62165 50.746 67 33 0 10 76 3 69 5.80e-15 71.6
MS.gene042679.t1 AT5G62165 50.746 67 33 0 10 76 3 69 5.80e-15 71.6
MS.gene042679.t1 AT4G18960 40.777 103 49 2 2 103 11 102 7.89e-15 72.0
MS.gene042679.t1 AT5G10140 49.275 69 34 1 9 76 2 70 1.07e-14 70.5
MS.gene042679.t1 AT3G61120 51.471 68 33 0 9 76 2 69 1.10e-14 71.6
MS.gene042679.t1 AT4G09960 47.059 68 36 0 9 76 97 164 1.15e-14 72.4
MS.gene042679.t1 AT1G29962 29.448 163 106 4 5 161 4 163 1.15e-14 70.1
MS.gene042679.t1 AT5G51860 52.239 67 32 0 10 76 3 69 1.19e-14 70.5
MS.gene042679.t1 AT5G51860 52.239 67 32 0 10 76 3 69 2.01e-14 70.1
MS.gene042679.t1 AT2G42830 47.059 68 36 0 9 76 17 84 2.53e-14 70.5
MS.gene042679.t1 AT2G42830 47.059 68 36 0 9 76 17 84 2.54e-14 70.5
MS.gene042679.t1 AT3G58780 46.479 71 38 0 6 76 14 84 2.98e-14 70.5
MS.gene042679.t1 AT3G58780 46.479 71 38 0 6 76 20 90 3.28e-14 70.5
MS.gene042679.t1 AT5G65070 32.447 188 100 8 9 173 2 185 4.59e-14 69.3
MS.gene042679.t1 AT5G23260 46.667 75 38 1 5 77 14 88 4.84e-14 70.1
MS.gene042679.t1 AT5G23260 46.667 75 38 1 5 77 14 88 4.86e-14 70.1
MS.gene042679.t1 AT1G17310 32.487 197 89 6 8 198 47 205 5.33e-14 68.9
MS.gene042679.t1 AT4G11880 51.471 68 32 1 10 76 3 70 5.56e-14 68.2
MS.gene042679.t1 AT4G11880 51.471 68 32 1 10 76 3 70 5.56e-14 68.2
MS.gene042679.t1 AT1G17310 32.487 197 89 6 8 198 58 216 5.85e-14 69.3
MS.gene042679.t1 AT1G77950 46.479 71 37 1 9 78 2 72 6.56e-14 69.3
MS.gene042679.t1 AT1G77950 46.479 71 37 1 9 78 2 72 6.56e-14 69.3
MS.gene042679.t1 AT1G77950 46.479 71 37 1 9 78 2 72 6.56e-14 69.3
MS.gene042679.t1 AT1G77950 46.479 71 37 1 9 78 2 72 6.56e-14 69.3
MS.gene042679.t1 AT4G11880 51.471 68 32 1 10 76 3 70 7.59e-14 68.9
MS.gene042679.t1 AT4G11880 51.471 68 32 1 10 76 3 70 7.59e-14 68.9
MS.gene042679.t1 AT3G58780 46.479 71 38 0 6 76 14 84 7.96e-14 69.7
MS.gene042679.t1 AT2G22540 30.864 162 89 5 9 169 2 141 8.45e-14 68.9
MS.gene042679.t1 AT3G30260 44.928 69 37 1 9 76 2 70 8.70e-14 68.9
MS.gene042679.t1 AT5G23260 47.887 71 35 1 9 77 2 72 1.38e-13 68.6
MS.gene042679.t1 AT5G23260 47.887 71 35 1 9 77 2 72 1.49e-13 68.2
MS.gene042679.t1 AT2G14210 46.377 69 36 1 9 76 2 70 1.53e-13 68.2
MS.gene042679.t1 AT2G14210 46.377 69 36 1 9 76 2 70 2.04e-13 67.8
MS.gene042679.t1 AT1G77980 46.479 71 37 1 9 78 2 72 2.32e-13 68.6
MS.gene042679.t1 AT5G65070 32.500 200 116 8 9 196 2 194 2.66e-13 67.4
MS.gene042679.t1 AT5G65050 44.928 69 37 1 9 76 2 70 4.87e-13 65.9
MS.gene042679.t1 AT1G22130 41.573 89 49 2 9 96 2 88 7.20e-13 67.4
MS.gene042679.t1 AT5G65050 44.928 69 37 1 9 76 2 70 7.43e-13 65.5
MS.gene042679.t1 AT5G65070 42.500 80 42 2 9 87 2 78 8.59e-13 65.5
MS.gene042679.t1 AT5G65050 44.928 69 37 1 9 76 2 70 9.15e-13 65.1
MS.gene042679.t1 AT5G65050 44.928 69 37 1 9 76 2 70 9.25e-13 65.1
MS.gene042679.t1 AT5G65070 32.934 167 78 6 9 171 2 138 1.01e-12 63.9
MS.gene042679.t1 AT5G60910 44.928 69 37 1 9 76 2 70 1.16e-12 65.9
MS.gene042679.t1 AT5G15800 47.826 69 35 1 9 76 2 70 1.22e-12 65.9
MS.gene042679.t1 AT1G26310 44.928 69 37 1 9 76 2 70 1.26e-12 65.9
MS.gene042679.t1 AT5G15800 47.826 69 35 1 9 76 2 70 2.31e-12 65.1
MS.gene042679.t1 AT1G28450 40.541 74 44 0 5 78 4 77 2.52e-12 63.9
MS.gene042679.t1 AT4G37435 39.773 88 48 2 9 91 2 89 2.53e-12 63.9
MS.gene042679.t1 AT1G69120 42.029 69 39 1 9 76 2 70 3.13e-12 64.3
MS.gene042679.t1 AT5G65060 44.928 69 37 1 9 76 2 70 3.17e-12 63.9
MS.gene042679.t1 AT1G47760 40.299 67 40 0 9 75 2 68 3.25e-12 63.5
MS.gene042679.t1 AT5G65060 44.928 69 37 1 9 76 2 70 3.55e-12 63.5
MS.gene042679.t1 AT5G20240 44.286 70 37 1 9 76 2 71 4.37e-12 63.5
MS.gene042679.t1 AT5G65060 44.928 69 37 1 9 76 2 70 4.37e-12 63.5
MS.gene042679.t1 AT5G20240 44.286 70 37 1 9 76 2 71 5.44e-12 62.4
MS.gene042679.t1 AT1G69120 42.029 69 39 1 9 76 2 70 6.58e-12 63.9
MS.gene042679.t1 AT3G58780 47.541 61 32 0 6 66 14 74 9.86e-12 63.2
MS.gene042679.t1 AT3G58780 47.541 61 32 0 6 66 14 74 1.50e-11 63.2
MS.gene042679.t1 AT2G03710 50.000 56 28 0 9 64 2 57 1.88e-11 61.6
MS.gene042679.t1 AT1G24260 44.928 69 37 1 9 76 2 70 2.22e-11 62.4
MS.gene042679.t1 AT1G24260 44.928 69 37 1 9 76 2 70 2.22e-11 62.4
MS.gene042679.t1 AT1G24260 44.928 69 37 1 9 76 2 70 2.31e-11 62.0
MS.gene042679.t1 AT3G02310 43.478 69 38 1 9 76 2 70 2.64e-11 61.2
MS.gene042679.t1 AT5G65070 49.123 57 29 0 9 65 2 58 2.88e-11 61.6
MS.gene042679.t1 AT1G71692 42.857 70 39 1 9 77 2 71 2.90e-11 61.6
MS.gene042679.t1 AT2G03710 44.286 70 37 2 9 76 2 71 3.53e-11 62.0
MS.gene042679.t1 AT2G03710 50.000 56 28 0 9 64 2 57 3.60e-11 61.6

Find 51 sgRNAs with CRISPR-Local

Find 65 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTATGACTATTTCAACATT+TGG 0.272727 5.2:-45528583 None:intergenic
TTTGTTTGGCTTCAACAATA+TGG 0.287971 5.2:+45529038 MS.gene042679:CDS
AGAAGAATCAAGCTCAGTTT+TGG 0.347534 5.2:+45528767 MS.gene042679:CDS
CTATGACTATTTCAACATTT+GGG 0.358955 5.2:-45528582 None:intergenic
ATTGAATCTTCTTGAGGATC+TGG 0.388433 5.2:-45528973 None:intergenic
TGGTGGAATTGTCCTATTGA+TGG 0.405545 5.2:+45528787 MS.gene042679:CDS
ATGTTGCAACCACATTTGTT+TGG 0.408052 5.2:+45529024 MS.gene042679:CDS
ATGACATCATGAAAATCATT+CGG 0.408528 5.2:+45528638 MS.gene042679:CDS
TTGTTTGGCTTCAACAATAT+GGG 0.410403 5.2:+45529039 MS.gene042679:CDS
GCTTCGAGAAAGTCACTTGT+AGG 0.412737 5.2:-45528453 None:intergenic
AGTGAGCTTTGCACTCTTTG+TGG 0.435768 5.2:+45528502 MS.gene042679:CDS
TCCTATTGATGGGATGGATA+TGG 0.452820 5.2:+45528798 MS.gene042679:CDS
TGACATCATGAAAATCATTC+GGG 0.467021 5.2:+45528639 MS.gene042679:CDS
TGAATCATTCAAGAAGGCTC+TGG 0.478190 5.2:+45528828 MS.gene042679:CDS
AACAAATGTGGTTGCAACAT+AGG 0.478237 5.2:-45529021 None:intergenic
CCTTCTTGAATGATTCAAGT+TGG 0.496013 5.2:-45528822 None:intergenic
GGGTTCTGAAGAAATTCTGC+TGG 0.496408 5.2:-45529000 None:intergenic
AATCTTCTTGAGGATCTGGC+TGG 0.497439 5.2:-45528969 None:intergenic
ACCATATCCATCCCATCAAT+AGG 0.499417 5.2:-45528799 None:intergenic
TATCTTCTCACCTAGTGAAA+AGG 0.506975 5.2:+45528543 MS.gene042679:CDS
GGTGGAATTGTCCTATTGAT+GGG 0.509530 5.2:+45528788 MS.gene042679:CDS
ACTTTCTCGAAGCGCTGTAG+TGG 0.510226 5.2:+45528463 MS.gene042679:CDS
TGTTGCGCAACATGCTGATA+AGG 0.512704 5.2:+45528867 MS.gene042679:CDS
ACAAATGTGGTTGCAACATA+GGG 0.521813 5.2:-45529020 None:intergenic
CAAGGTGGACATGGTCCCCA+TGG 0.523876 5.2:+45529066 MS.gene042679:CDS
GCTGGCTCAGTTCATTCCCA+CGG 0.531199 5.2:-45528738 None:intergenic
TGATGTATTGACTCATATCA+AGG 0.531389 5.2:+45528693 MS.gene042679:CDS
GGAAAGATTGAATCTTCTTG+AGG 0.536124 5.2:-45528979 None:intergenic
ATGGGAGGACAAGGTGGACA+TGG 0.555996 5.2:+45529057 MS.gene042679:CDS
GCTCGGACACAATGGTGTTA+CGG 0.556895 5.2:-45528666 None:intergenic
CTTTCTCGAAGCGCTGTAGT+GGG 0.569666 5.2:+45528464 MS.gene042679:CDS
GAATTGTCCTATTGATGGGA+TGG 0.578595 5.2:+45528792 MS.gene042679:CDS
TGGGAATGAACTGAGCCAGC+CGG 0.588710 5.2:+45528741 MS.gene042679:CDS
AGTCAATACATCATTGAGCT+CGG 0.593521 5.2:-45528683 None:intergenic
AACAATATGGGAGGACAAGG+TGG 0.597364 5.2:+45529051 MS.gene042679:CDS
CCAACTTGAATCATTCAAGA+AGG 0.607259 5.2:+45528822 MS.gene042679:CDS
TTCAACAATATGGGAGGACA+AGG 0.607830 5.2:+45529048 MS.gene042679:CDS
ATCATTCAAGAAGGCTCTGG+AGG 0.608190 5.2:+45528831 MS.gene042679:CDS
GATTAGATCAAGAAATCCCA+TGG 0.608568 5.2:-45529083 None:intergenic
GCTGATAAGGTTGAAATGCA+AGG 0.616187 5.2:+45528880 MS.gene042679:CDS
TTTGGCTTCAACAATATGGG+AGG 0.620361 5.2:+45529042 MS.gene042679:CDS
ATCATTGAGCTCGGACACAA+TGG 0.621229 5.2:-45528674 None:intergenic
AAGGTGGACATGGTCCCCAT+GGG 0.621524 5.2:+45529067 MS.gene042679:CDS
GGATCTGGCTGGTTCTCAAG+AGG 0.622631 5.2:-45528958 None:intergenic
ATTAGATCAAGAAATCCCAT+GGG 0.651611 5.2:-45529082 None:intergenic
CATAGATCGTTATCTCTCTG+AGG 0.659651 5.2:+45528600 MS.gene042679:CDS
TAGACATCGAAAAGAACCGT+GGG 0.671283 5.2:+45528722 MS.gene042679:CDS
TTGTTGAAGCCAAACAAATG+TGG 0.689285 5.2:-45529033 None:intergenic
TGTGCTTCAGCCATGTCGAG+CGG 0.709182 5.2:+45528373 None:intergenic
CTAGACATCGAAAAGAACCG+TGG 0.721163 5.2:+45528721 MS.gene042679:CDS
TTAGATCAAGAAATCCCATG+GGG 0.786091 5.2:-45529081 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! ATGACATCATGAAAATCATT+CGG + chr5.2:45528638-45528657 MS.gene042679:CDS 25.0%
! ATTTCCTTCAAAAACTTGAA+GGG - chr5.2:45528920-45528939 None:intergenic 25.0%
! CTATGACTATTTCAACATTT+GGG - chr5.2:45528585-45528604 None:intergenic 25.0%
! TCTATGACTATTTCAACATT+TGG - chr5.2:45528586-45528605 None:intergenic 25.0%
!! AATGAAAATACCTTTTCACT+AGG - chr5.2:45528556-45528575 None:intergenic 25.0%
!! TTTCATGATGTCATCATTTT+GGG - chr5.2:45528632-45528651 None:intergenic 25.0%
!! TTTTCATGATGTCATCATTT+TGG - chr5.2:45528633-45528652 None:intergenic 25.0%
!!! AGTGAAAAGGTATTTTCATT+TGG + chr5.2:45528556-45528575 MS.gene042679:CDS 25.0%
CATTTCCTTCAAAAACTTGA+AGG - chr5.2:45528921-45528940 None:intergenic 30.0%
TGACATCATGAAAATCATTC+GGG + chr5.2:45528639-45528658 MS.gene042679:CDS 30.0%
TTTCCTTCAAAAACTTGAAG+GGG - chr5.2:45528919-45528938 None:intergenic 30.0%
! TTCATGATGTCATCATTTTG+GGG - chr5.2:45528631-45528650 None:intergenic 30.0%
! TTGTTTGGCTTCAACAATAT+GGG + chr5.2:45529039-45529058 MS.gene042679:CDS 30.0%
! TTTGTTTGGCTTCAACAATA+TGG + chr5.2:45529038-45529057 MS.gene042679:CDS 30.0%
!! CTTCAAGTTTTTGAAGGAAA+TGG + chr5.2:45528919-45528938 MS.gene042679:CDS 30.0%
!! TGATGTATTGACTCATATCA+AGG + chr5.2:45528693-45528712 MS.gene042679:CDS 30.0%
AACAAATGTGGTTGCAACAT+AGG - chr5.2:45529024-45529043 None:intergenic 35.0%
ACAAATGTGGTTGCAACATA+GGG - chr5.2:45529023-45529042 None:intergenic 35.0%
AGTCAATACATCATTGAGCT+CGG - chr5.2:45528686-45528705 None:intergenic 35.0%
ATGTTGCAACCACATTTGTT+TGG + chr5.2:45529024-45529043 MS.gene042679:CDS 35.0%
ATTGAATCTTCTTGAGGATC+TGG - chr5.2:45528976-45528995 None:intergenic 35.0%
CCAACTTGAATCATTCAAGA+AGG + chr5.2:45528822-45528841 MS.gene042679:CDS 35.0%
CCTTCTTGAATGATTCAAGT+TGG - chr5.2:45528825-45528844 None:intergenic 35.0%
GGAAAGATTGAATCTTCTTG+AGG - chr5.2:45528982-45529001 None:intergenic 35.0%
TATCTTCTCACCTAGTGAAA+AGG + chr5.2:45528543-45528562 MS.gene042679:CDS 35.0%
TTCAAAAACTTGAAGGGGTT+GGG - chr5.2:45528914-45528933 None:intergenic 35.0%
TTGTTGAAGCCAAACAAATG+TGG - chr5.2:45529036-45529055 None:intergenic 35.0%
! AGAAGAATCAAGCTCAGTTT+TGG + chr5.2:45528767-45528786 MS.gene042679:CDS 35.0%
! TGAGCTTGATTCTTCTTTTC+CGG - chr5.2:45528763-45528782 None:intergenic 35.0%
ACCATATCCATCCCATCAAT+AGG - chr5.2:45528802-45528821 None:intergenic 40.0%
CATAGATCGTTATCTCTCTG+AGG + chr5.2:45528600-45528619 MS.gene042679:CDS 40.0%
CTTCAAAAACTTGAAGGGGT+TGG - chr5.2:45528915-45528934 None:intergenic 40.0%
GAATTGTCCTATTGATGGGA+TGG + chr5.2:45528792-45528811 MS.gene042679:CDS 40.0%
GCTGATAAGGTTGAAATGCA+AGG + chr5.2:45528880-45528899 MS.gene042679:CDS 40.0%
GGTGGAATTGTCCTATTGAT+GGG + chr5.2:45528788-45528807 MS.gene042679:CDS 40.0%
TAGACATCGAAAAGAACCGT+GGG + chr5.2:45528722-45528741 MS.gene042679:CDS 40.0%
TCCTATTGATGGGATGGATA+TGG + chr5.2:45528798-45528817 MS.gene042679:CDS 40.0%
TGAATCATTCAAGAAGGCTC+TGG + chr5.2:45528828-45528847 MS.gene042679:CDS 40.0%
TGGTGGAATTGTCCTATTGA+TGG + chr5.2:45528787-45528806 MS.gene042679:CDS 40.0%
TTCAACAATATGGGAGGACA+AGG + chr5.2:45529048-45529067 MS.gene042679:CDS 40.0%
! TTTGGCTTCAACAATATGGG+AGG + chr5.2:45529042-45529061 MS.gene042679:CDS 40.0%
!! AGAATCAAGCTCAGTTTTGG+TGG + chr5.2:45528770-45528789 MS.gene042679:CDS 40.0%
!! CAACCCCTTCAAGTTTTTGA+AGG + chr5.2:45528913-45528932 MS.gene042679:CDS 40.0%
!!! TGATGTCATCATTTTGGGGT+AGG - chr5.2:45528627-45528646 None:intergenic 40.0%
AACAATATGGGAGGACAAGG+TGG + chr5.2:45529051-45529070 MS.gene042679:CDS 45.0%
AATCTTCTTGAGGATCTGGC+TGG - chr5.2:45528972-45528991 None:intergenic 45.0%
AGTGAGCTTTGCACTCTTTG+TGG + chr5.2:45528502-45528521 MS.gene042679:CDS 45.0%
ATCATTGAGCTCGGACACAA+TGG - chr5.2:45528677-45528696 None:intergenic 45.0%
CTAGACATCGAAAAGAACCG+TGG + chr5.2:45528721-45528740 MS.gene042679:CDS 45.0%
GCGGAAAGAAAAATCGAGGT+CGG + chr5.2:45528392-45528411 MS.gene042679:CDS 45.0%
GCTTCGAGAAAGTCACTTGT+AGG - chr5.2:45528456-45528475 None:intergenic 45.0%
TCGAGCGGAAAGAAAAATCG+AGG + chr5.2:45528388-45528407 MS.gene042679:CDS 45.0%
TGTTGCGCAACATGCTGATA+AGG + chr5.2:45528867-45528886 MS.gene042679:CDS 45.0%
! ATCATTCAAGAAGGCTCTGG+AGG + chr5.2:45528831-45528850 MS.gene042679:CDS 45.0%
! CTTGATTCTTCTTTTCCGGC+TGG - chr5.2:45528759-45528778 None:intergenic 45.0%
!! GGGTTCTGAAGAAATTCTGC+TGG - chr5.2:45529003-45529022 None:intergenic 45.0%
! GCTCGGACACAATGGTGTTA+CGG - chr5.2:45528669-45528688 None:intergenic 50.0%
!! ACTTTCTCGAAGCGCTGTAG+TGG + chr5.2:45528463-45528482 MS.gene042679:CDS 50.0%
!! CTTTCTCGAAGCGCTGTAGT+GGG + chr5.2:45528464-45528483 MS.gene042679:CDS 50.0%
AAGGTGGACATGGTCCCCAT+GGG + chr5.2:45529067-45529086 MS.gene042679:CDS 55.0%
ATGGGAGGACAAGGTGGACA+TGG + chr5.2:45529057-45529076 MS.gene042679:CDS 55.0%
TGGGAATGAACTGAGCCAGC+CGG + chr5.2:45528741-45528760 MS.gene042679:CDS 55.0%
! GCTGGCTCAGTTCATTCCCA+CGG - chr5.2:45528741-45528760 None:intergenic 55.0%
! GGATCTGGCTGGTTCTCAAG+AGG - chr5.2:45528961-45528980 None:intergenic 55.0%
CAAGGTGGACATGGTCCCCA+TGG + chr5.2:45529066-45529085 MS.gene042679:CDS 60.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 45528385 45529098 45528385 ID=MS.gene042679
chr5.2 mRNA 45528385 45529098 45528385 ID=MS.gene042679.t1;Parent=MS.gene042679
chr5.2 exon 45528385 45529098 45528385 ID=MS.gene042679.t1.exon1;Parent=MS.gene042679.t1
chr5.2 CDS 45528385 45529098 45528385 ID=cds.MS.gene042679.t1;Parent=MS.gene042679.t1
Gene Sequence

>MS.gene042679

ATGTCGAGCGGAAAGAAAAATCGAGGTCGGCAAAAGATTGAGATGAAAAAGATGAGCGATGAAAGCAGCCTACAAGTGACTTTCTCGAAGCGCTGTAGTGGGCTCTTCAAGAAAGCTAGTGAGCTTTGCACTCTTTGTGGTGCATATGTTGCTCTAATTATCTTCTCACCTAGTGAAAAGGTATTTTCATTTGGTCACCCAAATGTTGAAATAGTCATAGATCGTTATCTCTCTGAGGTCCTACCCCAAAATGATGACATCATGAAAATCATTCGGGATGACCGTAACACCATTGTGTCCGAGCTCAATGATGTATTGACTCATATCAAGGATGAACTAGACATCGAAAAGAACCGTGGGAATGAACTGAGCCAGCCGGAAAAGAAGAATCAAGCTCAGTTTTGGTGGAATTGTCCTATTGATGGGATGGATATGGTCCAACTTGAATCATTCAAGAAGGCTCTGGAGGATCTTAAGAAACTTGTTGCGCAACATGCTGATAAGGTTGAAATGCAAGGTACTTCTACCCAACCCCTTCAAGTTTTTGAAGGAAATGGTTCATCATCTAACATGCCTCTTGAGAACCAGCCAGATCCTCAAGAAGATTCAATCTTTCCAGCAGAATTTCTTCAGAACCCTATGTTGCAACCACATTTGTTTGGCTTCAACAATATGGGAGGACAAGGTGGACATGGTCCCCATGGGATTTCTTGA
Protein sequence

>MS.gene042679.t1

MSSGKKNRGRQKIEMKKMSDESSLQVTFSKRCSGLFKKASELCTLCGAYVALIIFSPSEKVFSFGHPNVEIVIDRYLSEVLPQNDDIMKIIRDDRNTIVSELNDVLTHIKDELDIEKNRGNELSQPEKKNQAQFWWNCPIDGMDMVQLESFKKALEDLKKLVAQHADKVEMQGTSTQPLQVFEGNGSSSNMPLENQPDPQEDSIFPAEFLQNPMLQPHLFGFNNMGGQGGHGPHGIS