AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene043475

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene043475.t1 MTR_2g090950 71.123 187 50 2 8 192 55 239 2.82e-91 268
MS.gene043475.t1 MTR_2g090905 90.244 123 10 1 7 127 2 124 3.05e-77 228
MS.gene043475.t1 MTR_3g110190 55.556 81 30 1 40 120 64 138 1.60e-24 99.4
MS.gene043475.t1 MTR_2g436100 37.037 162 79 6 1 155 48 193 9.67e-22 90.9
MS.gene043475.t1 MTR_5g064980 41.667 96 52 2 39 134 105 196 1.56e-21 91.7
MS.gene043475.t1 MTR_5g066250 45.122 82 39 1 40 121 132 207 2.07e-21 91.7
MS.gene043475.t1 MTR_3g099650 45.679 81 41 1 42 122 107 184 2.48e-21 90.9
MS.gene043475.t1 MTR_4g120270 48.837 86 36 1 35 120 73 150 3.39e-21 89.4
MS.gene043475.t1 MTR_3g091620 35.965 114 66 2 4 117 64 170 1.20e-20 89.0
MS.gene043475.t1 MTR_5g064990 40.000 115 62 3 7 121 83 190 2.24e-20 88.6
MS.gene043475.t1 MTR_3g100400 43.902 82 40 1 40 121 128 203 2.48e-20 88.6
MS.gene043475.t1 MTR_1g074190 38.679 106 63 1 14 119 73 176 3.63e-20 87.4
MS.gene043475.t1 MTR_5g071930 44.706 85 38 1 32 116 56 131 6.44e-20 84.0
MS.gene043475.t1 MTR_3g464780 43.182 88 42 2 35 119 95 177 7.81e-20 85.1
MS.gene043475.t1 MTR_7g113800 43.210 81 43 1 42 122 91 168 1.02e-19 86.3
MS.gene043475.t1 MTR_6g087150 48.101 79 35 1 41 119 92 164 1.37e-19 86.3
MS.gene043475.t1 MTR_1g082550 41.975 81 44 1 42 122 98 175 2.16e-18 82.8
MS.gene043475.t1 MTR_4g129420 46.250 80 38 1 40 119 115 189 2.37e-18 83.2
MS.gene043475.t1 MTR_8g023400 44.872 78 36 1 42 119 92 162 1.60e-17 79.7
MS.gene043475.t1 MTR_2g096350 43.038 79 41 2 41 119 106 180 1.75e-17 78.2
MS.gene043475.t1 MTR_1g070140 38.750 80 44 1 40 119 101 175 2.60e-17 79.3
MS.gene043475.t1 MTR_4g063070 45.000 80 40 2 40 119 306 381 2.76e-17 79.7
MS.gene043475.t1 MTR_5g076990 36.585 123 65 5 1 120 40 152 3.20e-17 79.0
MS.gene043475.t1 MTR_3g071300 36.036 111 65 3 17 123 49 157 3.68e-17 76.3
MS.gene043475.t1 MTR_8g066780 44.872 78 39 1 42 119 114 187 4.60e-17 79.0
MS.gene043475.t1 MTR_7g116220 43.421 76 40 1 42 117 70 142 4.68e-17 76.3
MS.gene043475.t1 MTR_8g066740 38.053 113 56 4 11 120 51 152 5.45e-17 78.2
MS.gene043475.t1 MTR_3g078120 36.207 116 68 2 15 130 30 139 6.28e-17 75.1
MS.gene043475.t1 MTR_5g030010 43.590 78 38 1 42 119 122 193 6.37e-17 78.6
MS.gene043475.t1 MTR_7g117540 45.455 77 35 1 43 119 77 146 8.46e-17 77.4
MS.gene043475.t1 MTR_1g492830 37.391 115 59 3 7 119 30 133 1.22e-16 75.9
MS.gene043475.t1 MTR_7g096690 38.462 78 46 1 42 119 70 145 1.37e-16 77.4
MS.gene043475.t1 MTR_5g034790 42.500 80 40 1 40 119 114 187 1.40e-16 77.8
MS.gene043475.t1 MTR_7g108855 41.772 79 42 1 43 121 67 141 1.82e-16 75.1
MS.gene043475.t1 MTR_1g100737 39.241 79 47 1 42 120 92 169 2.54e-16 74.3
MS.gene043475.t1 MTR_8g063660 42.857 77 38 1 40 116 66 136 3.37e-16 76.3
MS.gene043475.t1 MTR_7g076250 41.333 75 39 2 42 116 63 132 4.51e-16 73.6
MS.gene043475.t1 MTR_3g078450 29.661 118 68 4 5 117 40 147 5.39e-16 74.3
MS.gene043475.t1 MTR_7g116180 41.772 79 37 2 42 117 67 139 5.79e-16 73.2
MS.gene043475.t1 MTR_1g070425 41.772 79 37 2 42 117 68 140 6.68e-16 73.2
MS.gene043475.t1 MTR_6g007737 43.210 81 40 1 40 120 131 205 7.28e-16 75.9
MS.gene043475.t1 MTR_5g082940 39.286 84 47 1 42 125 75 154 7.44e-16 72.8
MS.gene043475.t1 MTR_4g106680 43.750 80 39 2 40 119 104 177 7.80e-16 75.1
MS.gene043475.t1 MTR_6g055030 33.333 126 76 3 25 147 79 199 1.03e-15 74.7
MS.gene043475.t1 MTR_1g043410 35.714 98 54 2 42 133 94 188 1.12e-15 74.7
MS.gene043475.t1 MTR_3g078470 29.915 117 67 4 6 117 41 147 1.88e-15 72.8
MS.gene043475.t1 MTR_4g030070 39.535 86 45 1 36 121 79 157 2.17e-15 72.8
MS.gene043475.t1 MTR_8g019710 52.941 51 24 0 70 120 50 100 2.92e-15 70.5
MS.gene043475.t1 MTR_8g089880 41.772 79 40 2 41 119 126 198 2.97e-15 73.2
MS.gene043475.t1 MTR_5g024730 42.857 77 40 1 40 116 75 147 3.09e-15 72.0
MS.gene043475.t1 MTR_2g044570 46.377 69 34 1 51 119 63 128 3.10e-15 73.2
MS.gene043475.t1 MTR_3g114500 54.000 50 23 0 73 122 70 119 5.54e-15 69.3
MS.gene043475.t1 MTR_3g086700 39.474 76 43 1 46 121 50 122 6.48e-15 70.5
MS.gene043475.t1 MTR_8g073120 40.000 80 40 2 40 117 68 141 6.49e-15 70.9
MS.gene043475.t1 MTR_2g041200 37.634 93 58 0 29 121 64 156 7.44e-15 70.1
MS.gene043475.t1 MTR_3g086730 39.474 76 43 1 46 121 50 122 1.43e-14 70.5
MS.gene043475.t1 MTR_1g026070 39.286 84 42 1 40 123 46 120 1.81e-14 68.2
MS.gene043475.t1 MTR_2g055790 36.667 90 48 1 34 123 69 149 2.09e-14 69.3
MS.gene043475.t1 MTR_5g026720 35.556 90 55 1 35 121 51 140 2.60e-14 68.2
MS.gene043475.t1 MTR_8g009190 38.961 77 44 1 45 121 79 152 4.43e-14 70.1
MS.gene043475.t1 MTR_5g064890 53.191 47 22 0 73 119 153 199 5.13e-14 70.1
MS.gene043475.t1 MTR_2g035800 37.755 98 47 2 31 120 57 148 5.71e-14 67.4
MS.gene043475.t1 MTR_5g092790 41.026 78 42 1 42 119 157 230 9.30e-14 68.2
MS.gene043475.t1 MTR_8g092840 41.558 77 40 1 40 116 111 182 9.62e-14 68.2
MS.gene043475.t1 MTR_8g092960 41.558 77 40 1 40 116 101 172 1.12e-13 67.8
MS.gene043475.t1 MTR_3g094000 34.343 99 47 2 42 140 91 171 1.25e-13 67.0
MS.gene043475.t1 MTR_2g009310 55.319 47 21 0 73 119 160 206 1.33e-13 69.3
MS.gene043475.t1 MTR_5g026730 37.634 93 51 2 36 121 49 141 1.36e-13 66.6
MS.gene043475.t1 MTR_7g059360 59.184 49 20 0 73 121 157 205 1.37e-13 67.8
MS.gene043475.t1 MTR_7g079280 33.333 81 50 1 41 121 79 155 1.47e-13 66.6
MS.gene043475.t1 MTR_5g092750 32.353 136 74 5 2 119 95 230 1.48e-13 67.8
MS.gene043475.t1 MTR_1g056350 33.750 80 50 1 42 121 74 150 3.16e-13 65.5
MS.gene043475.t1 MTR_3g095560 37.209 86 49 1 31 116 98 178 4.32e-13 66.6
MS.gene043475.t1 MTR_8g071815 40.845 71 40 1 51 121 69 137 5.48e-13 65.1
MS.gene043475.t1 MTR_7g073200 33.333 90 52 2 41 130 80 161 6.03e-13 65.1
MS.gene043475.t1 MTR_4g093830 41.250 80 43 1 73 148 151 230 6.12e-13 67.4
MS.gene043475.t1 MTR_5g022920 34.737 95 58 1 22 116 141 231 6.82e-13 65.9
MS.gene043475.t1 MTR_8g032690 51.163 43 21 0 74 116 19 61 7.53e-13 63.2
MS.gene043475.t1 MTR_7g079290 33.750 80 51 1 42 121 125 202 9.31e-13 65.1
MS.gene043475.t1 MTR_4g094725 38.961 77 43 1 40 116 76 148 1.35e-12 63.5
MS.gene043475.t1 MTR_8g093010 38.961 77 42 1 40 116 105 176 2.15e-12 64.3
MS.gene043475.t1 MTR_4g056590 35.897 78 41 1 42 119 100 168 2.16e-12 63.9
MS.gene043475.t1 MTR_4g116460 35.526 76 47 2 45 119 412 486 2.40e-12 65.9
MS.gene043475.t1 MTR_3g012550 32.222 90 57 1 42 131 80 165 2.94e-12 63.2
MS.gene043475.t1 MTR_7g116200 38.158 76 40 1 42 117 68 136 3.07e-12 63.2
MS.gene043475.t1 MTR_4g116460 35.526 76 47 2 45 119 455 529 3.07e-12 65.5
MS.gene043475.t1 MTR_8g092985 38.961 77 42 1 40 116 109 180 3.49e-12 63.5
MS.gene043475.t1 MTR_4g108830 35.227 88 47 2 32 119 142 219 3.70e-12 63.5
MS.gene043475.t1 MTR_4g108830 35.227 88 47 2 32 119 114 191 3.87e-12 63.2
MS.gene043475.t1 MTR_6g055030 41.667 72 42 0 76 147 97 168 4.15e-12 64.3
MS.gene043475.t1 MTR_3g116000 41.558 77 38 2 40 116 77 146 4.56e-12 62.8
MS.gene043475.t1 MTR_4g022410 46.032 63 28 1 57 119 102 158 4.90e-12 62.8
MS.gene043475.t1 MTR_8g074900 55.102 49 22 0 68 116 174 222 5.34e-12 63.2
MS.gene043475.t1 MTR_5g026260 41.558 77 34 4 46 119 482 550 6.17e-12 64.7
MS.gene043475.t1 MTR_8g092930 56.818 44 19 0 73 116 138 181 7.27e-12 62.8
MS.gene043475.t1 MTR_8g092990 54.545 44 20 0 73 116 140 183 1.29e-11 62.4
MS.gene043475.t1 MTR_8g092970 54.545 44 20 0 73 116 130 173 1.35e-11 62.0
MS.gene043475.t1 MTR_8g028465 31.250 80 47 1 42 121 90 161 1.70e-11 61.6
MS.gene043475.t1 MTR_3g091200 36.264 91 51 3 41 130 302 386 2.45e-11 62.8
MS.gene043475.t1 MTR_7g117350 33.750 80 53 0 42 121 290 369 2.77e-11 62.4
MS.gene043475.t1 MTR_7g117350 33.750 80 53 0 42 121 282 361 2.99e-11 62.4
MS.gene043475.t1 MTR_8g099495 36.364 99 56 3 25 120 299 393 3.37e-11 62.4
MS.gene043475.t1 MTR_7g116210 36.842 76 41 1 42 117 10 78 3.40e-11 58.9
MS.gene043475.t1 MTR_8g099515 38.272 81 42 2 42 120 309 383 3.57e-11 62.4
MS.gene043475.t1 MTR_8g027980 38.158 76 40 2 46 119 94 164 3.78e-11 61.2
MS.gene043475.t1 MTR_6g007670 38.889 72 37 1 48 119 14 78 5.36e-11 60.8
MS.gene043475.t1 MTR_4g064550 42.623 61 34 1 59 119 200 259 5.48e-11 61.2
MS.gene043475.t1 MTR_7g078150 44.643 56 30 1 72 126 88 143 7.21e-11 59.3
MS.gene043475.t1 MTR_6g007680 39.130 69 36 1 51 119 49 111 8.61e-11 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene043475.t1 AT2G42350 42.188 192 87 8 5 192 46 217 8.35e-39 134
MS.gene043475.t1 AT2G42360 41.463 205 93 8 1 192 46 236 5.47e-35 124
MS.gene043475.t1 AT4G15975 45.263 95 43 2 29 121 36 123 4.48e-23 93.6
MS.gene043475.t1 AT3G16720 49.367 79 33 1 42 120 94 165 6.51e-22 91.7
MS.gene043475.t1 AT2G35420 36.885 122 61 3 2 123 47 152 1.04e-21 90.1
MS.gene043475.t1 AT2G20030 49.367 79 34 1 41 119 97 169 1.69e-21 91.7
MS.gene043475.t1 AT5G05810 45.122 82 39 1 40 121 118 193 5.32e-21 90.5
MS.gene043475.t1 AT1G35330 43.210 81 43 1 42 122 100 177 5.54e-20 86.7
MS.gene043475.t1 AT4G09120 36.923 130 69 4 42 171 94 210 7.02e-20 86.7
MS.gene043475.t1 AT5G27420 41.111 90 45 2 42 126 95 181 2.15e-19 85.5
MS.gene043475.t1 AT4G28890 45.570 79 37 1 41 119 96 168 2.16e-19 86.3
MS.gene043475.t1 AT4G09130 34.328 134 77 3 29 160 78 202 2.35e-19 85.5
MS.gene043475.t1 AT5G43420 43.678 87 39 2 42 119 98 183 2.36e-19 85.5
MS.gene043475.t1 AT1G72200 36.066 122 74 2 1 121 73 191 3.01e-19 85.5
MS.gene043475.t1 AT2G35000 35.135 111 65 2 9 119 77 180 3.34e-19 85.1
MS.gene043475.t1 AT4G09100 43.373 83 44 1 39 121 53 132 5.10e-19 80.1
MS.gene043475.t1 AT2G34000 43.529 85 46 1 37 121 56 138 7.65e-19 80.1
MS.gene043475.t1 AT1G20823 39.048 105 53 3 16 116 56 153 1.57e-18 80.5
MS.gene043475.t1 AT4G40070 40.741 81 45 1 42 122 95 172 2.03e-18 82.4
MS.gene043475.t1 AT4G30400 48.052 77 35 1 40 116 105 176 2.23e-18 83.2
MS.gene043475.t1 AT1G22500 44.186 86 42 2 36 121 86 165 2.27e-18 82.8
MS.gene043475.t1 AT2G47560 40.860 93 51 1 33 125 71 159 2.27e-18 80.9
MS.gene043475.t1 AT3G05200 42.308 78 42 1 42 119 99 173 2.29e-18 82.8
MS.gene043475.t1 AT4G17905 34.615 130 70 4 1 119 75 200 2.42e-18 82.0
MS.gene043475.t1 AT4G17905 38.053 113 60 3 13 119 118 226 3.86e-18 81.6
MS.gene043475.t1 AT4G10150 32.515 163 88 4 1 156 45 192 4.68e-18 80.1
MS.gene043475.t1 AT1G04360 41.000 100 52 3 25 119 82 179 5.02e-18 82.0
MS.gene043475.t1 AT1G23980 47.436 78 33 2 40 116 116 186 1.21e-17 80.9
MS.gene043475.t1 AT1G53820 45.000 80 37 1 40 119 93 165 1.36e-17 80.1
MS.gene043475.t1 AT2G34990 39.583 96 51 2 42 137 89 177 1.89e-17 79.7
MS.gene043475.t1 AT2G34990 39.583 96 51 2 42 137 67 155 1.89e-17 79.3
MS.gene043475.t1 AT4G09110 40.909 88 45 2 42 129 94 174 2.24e-17 79.3
MS.gene043475.t1 AT1G72310 37.705 122 63 3 40 160 100 209 2.82e-17 79.3
MS.gene043475.t1 AT2G17450 42.857 84 47 1 39 121 66 149 7.98e-17 75.9
MS.gene043475.t1 AT3G14320 40.449 89 46 1 31 119 52 133 1.13e-16 75.9
MS.gene043475.t1 AT2G18650 43.750 80 40 1 40 119 97 171 2.14e-16 77.4
MS.gene043475.t1 AT3G62690 40.506 79 41 1 43 121 88 160 3.87e-16 75.1
MS.gene043475.t1 AT4G33565 41.975 81 35 2 42 119 191 262 4.49e-16 76.3
MS.gene043475.t1 AT4G10160 31.944 144 87 3 16 156 43 178 5.57e-16 74.3
MS.gene043475.t1 AT1G32361 38.384 99 50 3 38 133 126 216 7.68e-16 75.5
MS.gene043475.t1 AT1G76410 37.624 101 55 2 16 116 54 146 7.81e-16 73.2
MS.gene043475.t1 AT3G48030 43.750 80 34 2 40 116 178 249 9.58e-16 75.1
MS.gene043475.t1 AT5G46650 40.426 94 51 3 30 121 72 162 9.64e-16 74.7
MS.gene043475.t1 AT3G48030 43.750 80 34 2 40 116 100 171 9.94e-16 74.3
MS.gene043475.t1 AT3G18930 41.463 82 44 1 42 119 120 201 1.18e-15 75.5
MS.gene043475.t1 AT3G18930 41.463 82 44 1 42 119 120 201 1.18e-15 75.5
MS.gene043475.t1 AT3G18930 41.463 82 44 1 42 119 120 201 1.18e-15 75.5
MS.gene043475.t1 AT5G40250 40.217 92 50 2 40 126 105 196 1.41e-15 75.1
MS.gene043475.t1 AT5G17600 33.043 115 67 2 5 119 83 187 1.85e-15 74.3
MS.gene043475.t1 AT5G58580 41.250 80 42 1 40 119 109 183 1.92e-15 73.9
MS.gene043475.t1 AT5G10380 35.088 114 68 1 39 152 106 213 2.03e-15 73.9
MS.gene043475.t1 AT3G60220 34.028 144 86 2 47 190 93 227 4.75e-15 73.2
MS.gene043475.t1 AT1G33480 35.922 103 57 2 42 142 75 170 7.36e-15 71.6
MS.gene043475.t1 AT3G03550 42.857 77 38 2 43 119 134 204 7.80e-15 72.8
MS.gene043475.t1 AT1G72220 41.333 75 39 1 72 146 175 244 9.88e-15 72.8
MS.gene043475.t1 AT2G27940 34.211 76 43 1 42 117 115 183 1.08e-14 70.9
MS.gene043475.t1 AT5G01880 63.636 44 16 0 73 116 104 147 1.31e-14 69.3
MS.gene043475.t1 AT3G19140 32.500 120 73 2 1 120 14 125 1.47e-14 68.6
MS.gene043475.t1 AT1G74410 36.905 84 47 1 37 120 145 222 2.70e-14 69.7
MS.gene043475.t1 AT4G17920 37.349 83 49 1 38 120 77 156 3.14e-14 70.5
MS.gene043475.t1 AT1G49230 44.156 77 38 1 40 116 102 173 3.35e-14 69.3
MS.gene043475.t1 AT2G46160 31.183 93 62 1 41 131 103 195 5.26e-14 68.6
MS.gene043475.t1 AT2G46160 31.183 93 62 1 41 131 103 195 5.26e-14 68.6
MS.gene043475.t1 AT4G17245 52.727 55 25 1 66 119 94 148 1.02e-13 67.0
MS.gene043475.t1 AT3G61550 33.684 95 58 1 42 131 99 193 1.10e-13 67.8
MS.gene043475.t1 AT5G57750 38.961 77 42 1 40 116 93 164 1.30e-13 67.4
MS.gene043475.t1 AT5G53110 31.579 114 74 1 7 120 267 376 1.65e-13 68.9
MS.gene043475.t1 AT2G17730 37.234 94 55 2 27 119 151 241 2.18e-13 67.4
MS.gene043475.t1 AT4G35480 35.484 93 51 1 38 121 68 160 2.91e-13 66.2
MS.gene043475.t1 AT2G37580 42.857 70 34 1 57 126 131 194 3.12e-13 67.0
MS.gene043475.t1 AT1G53010 41.975 81 46 1 37 116 92 172 4.90e-13 65.5
MS.gene043475.t1 AT2G46493 36.842 95 50 3 27 116 91 180 5.23e-13 65.5
MS.gene043475.t1 AT4G35840 37.500 96 55 2 22 116 142 233 5.37e-13 66.2
MS.gene043475.t1 AT5G66070 51.923 52 25 0 65 116 167 218 7.75e-13 65.5
MS.gene043475.t1 AT5G66070 51.923 52 25 0 65 116 167 218 7.75e-13 65.5
MS.gene043475.t1 AT2G18670 37.079 89 50 2 42 130 83 165 8.70e-13 64.7
MS.gene043475.t1 AT3G20395 38.667 75 38 1 42 116 147 213 1.28e-12 65.1
MS.gene043475.t1 AT4G30370 37.179 78 43 1 42 119 89 160 1.41e-12 63.9
MS.gene043475.t1 AT5G66070 51.923 52 25 0 65 116 191 242 1.51e-12 65.1
MS.gene043475.t1 AT3G10910 36.842 76 42 1 41 116 87 156 2.72e-12 63.5
MS.gene043475.t1 AT5G06490 32.967 91 52 2 42 127 96 182 3.19e-12 63.5
MS.gene043475.t1 AT5G42200 47.059 51 27 0 73 123 103 153 3.38e-12 62.8
MS.gene043475.t1 AT5G05280 54.545 44 20 0 73 116 112 155 4.64e-12 62.8
MS.gene043475.t1 AT3G18773 40.260 77 41 1 40 116 101 172 4.94e-12 63.5
MS.gene043475.t1 AT1G49210 40.260 77 41 1 40 116 106 177 4.96e-12 63.5
MS.gene043475.t1 AT2G35910 35.000 80 46 1 42 121 121 194 6.35e-12 63.2
MS.gene043475.t1 AT5G47610 37.143 70 39 1 50 119 88 152 8.42e-12 61.6
MS.gene043475.t1 AT1G49220 59.091 44 18 0 73 116 134 177 8.84e-12 63.2
MS.gene043475.t1 AT5G66160 37.634 93 47 4 43 131 207 292 9.30e-12 63.5
MS.gene043475.t1 AT1G26800 48.936 47 23 1 73 119 112 157 9.90e-12 62.4
MS.gene043475.t1 AT2G25410 50.000 54 26 1 68 121 322 374 1.03e-11 63.9
MS.gene043475.t1 AT1G28040 33.898 118 66 5 2 116 187 295 1.10e-11 63.2
MS.gene043475.t1 AT1G49200 38.961 77 42 1 40 116 107 178 1.39e-11 62.4
MS.gene043475.t1 AT2G46495 34.343 99 59 3 23 121 247 339 2.30e-11 62.8
MS.gene043475.t1 AT2G46495 34.343 99 59 3 23 121 275 367 2.92e-11 62.4
MS.gene043475.t1 AT4G26580 36.000 75 47 1 42 116 257 330 3.87e-11 62.0
MS.gene043475.t1 AT4G26580 36.000 75 47 1 42 116 257 330 3.87e-11 62.0
MS.gene043475.t1 AT3G11110 35.294 85 50 1 35 119 73 152 6.42e-11 59.3
MS.gene043475.t1 AT5G07040 32.500 80 50 1 42 121 66 141 6.53e-11 59.3
MS.gene043475.t1 AT5G66160 41.333 75 36 3 43 116 207 274 6.75e-11 60.8
MS.gene043475.t1 AT1G63840 46.429 56 27 2 74 126 89 144 6.82e-11 59.3
MS.gene043475.t1 AT3G60966 45.763 59 30 1 63 121 53 109 9.09e-11 58.2

Find 57 sgRNAs with CRISPR-Local

Find 58 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGCACATTCAACAATATTAT+TGG 0.123870 2.2:-8532163 None:intergenic
CTTCTCGGAGGATTCTTATT+AGG 0.160412 2.2:+8532436 MS.gene043475:CDS
AAGAAACTATGCATCATTTA+AGG 0.219432 2.2:+8532575 MS.gene043475:CDS
TGTTGGGTGGTTCTGTTAAT+AGG 0.249859 2.2:-8532059 None:intergenic
CTTATTAGGGATAGATCTTT+AGG 0.260219 2.2:+8532450 MS.gene043475:CDS
TCAACCTTGGTTCGACAAAT+TGG 0.263735 2.2:-8532297 None:intergenic
AACAATAGAAAGTATAGATT+TGG 0.269300 2.2:+8532551 MS.gene043475:CDS
CTCAATGCTGAAATATCTTT+GGG 0.301879 2.2:-8532411 None:intergenic
GCTCAATGCTGAAATATCTT+TGG 0.304836 2.2:-8532412 None:intergenic
TTCTCGGAGGATTCTTATTA+GGG 0.306636 2.2:+8532437 MS.gene043475:CDS
GGTTCAATCACGAAGCTCTT+AGG 0.336776 2.2:+8531989 MS.gene043475:CDS
GGAAGAGTAGTGATGAGCTT+AGG 0.348515 2.2:-8532093 None:intergenic
ATCAATGAAGTTGGTGACTT+TGG 0.365957 2.2:-8532602 None:intergenic
GTTGGGTGGTTCTGTTAATA+GGG 0.419488 2.2:-8532058 None:intergenic
TCAAATGGTGGTGGTGTTAG+TGG 0.422429 2.2:+8532384 MS.gene043475:CDS
TTTCAGCATTGAGCTCTTCT+CGG 0.434663 2.2:+8532421 MS.gene043475:CDS
GGTGTGTTTGAGTTTATTGC+AGG 0.439036 2.2:+8532185 MS.gene043475:CDS
GAAGAGTAGTGATGAGCTTA+GGG 0.463676 2.2:-8532092 None:intergenic
CCATCTGAATGCACATCAAA+TGG 0.464565 2.2:+8532369 MS.gene043475:CDS
TGCAGGATGAAGAAATTATG+AGG 0.474266 2.2:+8532202 MS.gene043475:CDS
TGAAAACTATGCTTACAATT+CGG 0.475222 2.2:-8532231 None:intergenic
AAGAGCTTCGTGATTGAACC+TGG 0.476816 2.2:-8531986 None:intergenic
ATGCAAATCATCAATGAAGT+TGG 0.485224 2.2:-8532611 None:intergenic
TAATCGTGAGGAGTACTAGA+AGG 0.494576 2.2:-8532483 None:intergenic
CTTAGGGTCGAGACCAGTGT+TGG 0.501922 2.2:-8532076 None:intergenic
TTCAAGCCTCGGCTCAACCT+TGG 0.504204 2.2:-8532310 None:intergenic
GGTGAGTCTCACATCGCCAT+TGG 0.505187 2.2:-8532019 None:intergenic
ATCATGATTTAGAGCGGCAA+TGG 0.507782 2.2:+8532517 MS.gene043475:CDS
CGTGAGGAGTACTAGAAGGT+TGG 0.517114 2.2:-8532479 None:intergenic
CTCTTCACAAGATCTACTCC+AGG 0.542499 2.2:+8531968 MS.gene043475:CDS
TTAGGGTCGAGACCAGTGTT+GGG 0.551891 2.2:-8532075 None:intergenic
AACAAAGTGGGGCCCTCGCG+TGG 0.553114 2.2:-8532339 None:intergenic
CGTGGCTCTAGTTCAAGCCT+CGG 0.570266 2.2:-8532321 None:intergenic
AGATGGTGGTTCAAACAAAG+TGG 0.581605 2.2:-8532352 None:intergenic
CCATTTGATGTGCATTCAGA+TGG 0.582468 2.2:-8532369 None:intergenic
ATATGGGTTGTATTGACAAG+TGG 0.584829 2.2:+8532253 MS.gene043475:CDS
GATGGTGGTTCAAACAAAGT+GGG 0.588352 2.2:-8532351 None:intergenic
CAATAATATTGTTGAATGTG+CGG 0.603074 2.2:+8532164 MS.gene043475:CDS
TTTGATGTGCATTCAGATGG+TGG 0.603135 2.2:-8532366 None:intergenic
GGGTCGAGACCAGTGTTGGG+TGG 0.609948 2.2:-8532072 None:intergenic
TAATAGGGTGTGAGCTTGAG+TGG 0.610206 2.2:-8532043 None:intergenic
CAGCATTGAGCTCTTCTCGG+AGG 0.613663 2.2:+8532424 MS.gene043475:CDS
CAATTGATCATGATTTAGAG+CGG 0.621510 2.2:+8532511 MS.gene043475:CDS
TTAACAGAACCACCCAACAC+TGG 0.622941 2.2:+8532063 MS.gene043475:CDS
CAAATGGTGGTGGTGTTAGT+GGG 0.623939 2.2:+8532385 MS.gene043475:CDS
GTGTCCAATTTGTCGAACCA+AGG 0.627627 2.2:+8532293 MS.gene043475:CDS
GCTTGAACTAGAGCCACGCG+AGG 0.644876 2.2:+8532326 MS.gene043475:CDS
CAATGCTGAAATATCTTTGG+GGG 0.646583 2.2:-8532409 None:intergenic
GTCGAACCAAGGTTGAGCCG+AGG 0.648386 2.2:+8532304 MS.gene043475:CDS
GAATGCACATCAAATGGTGG+TGG 0.649668 2.2:+8532375 MS.gene043475:CDS
TCAATGCTGAAATATCTTTG+GGG 0.653177 2.2:-8532410 None:intergenic
GCTCTTAGGAGAGCAGCCAA+TGG 0.666165 2.2:+8532003 MS.gene043475:CDS
CTTGAACTAGAGCCACGCGA+GGG 0.677949 2.2:+8532327 MS.gene043475:CDS
ATGGTGGTTCAAACAAAGTG+GGG 0.678900 2.2:-8532350 None:intergenic
TCAATTGTAATATAATCGTG+AGG 0.701557 2.2:-8532495 None:intergenic
TCTGAATGCACATCAAATGG+TGG 0.727041 2.2:+8532372 MS.gene043475:CDS
TAGGGTGTGAGCTTGAGTGG+CGG 0.743047 2.2:-8532040 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AACAATAGAAAGTATAGATT+TGG + chr2.2:8532551-8532570 MS.gene043475:CDS 20.0%
! AAGAAACTATGCATCATTTA+AGG + chr2.2:8532575-8532594 MS.gene043475:CDS 25.0%
! CAATAATATTGTTGAATGTG+CGG + chr2.2:8532164-8532183 MS.gene043475:CDS 25.0%
! TCAATTGTAATATAATCGTG+AGG - chr2.2:8532498-8532517 None:intergenic 25.0%
! TGAAAACTATGCTTACAATT+CGG - chr2.2:8532234-8532253 None:intergenic 25.0%
!! TGTAAGCATAGTTTTCATAT+GGG + chr2.2:8532237-8532256 MS.gene043475:CDS 25.0%
!! TTGTAAGCATAGTTTTCATA+TGG + chr2.2:8532236-8532255 MS.gene043475:CDS 25.0%
!!! TTTTGTTTGAAGATGAAAGT+AGG - chr2.2:8532117-8532136 None:intergenic 25.0%
CAATTGATCATGATTTAGAG+CGG + chr2.2:8532511-8532530 MS.gene043475:CDS 30.0%
CGCACATTCAACAATATTAT+TGG - chr2.2:8532166-8532185 None:intergenic 30.0%
CTCAATGCTGAAATATCTTT+GGG - chr2.2:8532414-8532433 None:intergenic 30.0%
CTTATTAGGGATAGATCTTT+AGG + chr2.2:8532450-8532469 MS.gene043475:CDS 30.0%
TCAATGCTGAAATATCTTTG+GGG - chr2.2:8532413-8532432 None:intergenic 30.0%
CAATGCTGAAATATCTTTGG+GGG - chr2.2:8532412-8532431 None:intergenic 35.0%
GCTCAATGCTGAAATATCTT+TGG - chr2.2:8532415-8532434 None:intergenic 35.0%
TGCAGGATGAAGAAATTATG+AGG + chr2.2:8532202-8532221 MS.gene043475:CDS 35.0%
TTCTCGGAGGATTCTTATTA+GGG + chr2.2:8532437-8532456 MS.gene043475:CDS 35.0%
! ATATGGGTTGTATTGACAAG+TGG + chr2.2:8532253-8532272 MS.gene043475:CDS 35.0%
ATGGTGGTTCAAACAAAGTG+GGG - chr2.2:8532353-8532372 None:intergenic 40.0%
CCATCTGAATGCACATCAAA+TGG + chr2.2:8532369-8532388 MS.gene043475:CDS 40.0%
CCATTTGATGTGCATTCAGA+TGG - chr2.2:8532372-8532391 None:intergenic 40.0%
CTTCTCGGAGGATTCTTATT+AGG + chr2.2:8532436-8532455 MS.gene043475:CDS 40.0%
GAAGAGTAGTGATGAGCTTA+GGG - chr2.2:8532095-8532114 None:intergenic 40.0%
TCTGAATGCACATCAAATGG+TGG + chr2.2:8532372-8532391 MS.gene043475:CDS 40.0%
TTTGATGTGCATTCAGATGG+TGG - chr2.2:8532369-8532388 None:intergenic 40.0%
! AGATGGTGGTTCAAACAAAG+TGG - chr2.2:8532355-8532374 None:intergenic 40.0%
! ATCATGATTTAGAGCGGCAA+TGG + chr2.2:8532517-8532536 MS.gene043475:CDS 40.0%
! GATGGTGGTTCAAACAAAGT+GGG - chr2.2:8532354-8532373 None:intergenic 40.0%
! GGTGTGTTTGAGTTTATTGC+AGG + chr2.2:8532185-8532204 MS.gene043475:CDS 40.0%
! GTTGGGTGGTTCTGTTAATA+GGG - chr2.2:8532061-8532080 None:intergenic 40.0%
! TCAACCTTGGTTCGACAAAT+TGG - chr2.2:8532300-8532319 None:intergenic 40.0%
! TGTTGGGTGGTTCTGTTAAT+AGG - chr2.2:8532062-8532081 None:intergenic 40.0%
! TTTCAGCATTGAGCTCTTCT+CGG + chr2.2:8532421-8532440 MS.gene043475:CDS 40.0%
!! TAATCGTGAGGAGTACTAGA+AGG - chr2.2:8532486-8532505 None:intergenic 40.0%
AAGAGCTTCGTGATTGAACC+TGG - chr2.2:8531989-8532008 None:intergenic 45.0%
CTCTTCACAAGATCTACTCC+AGG + chr2.2:8531968-8531987 MS.gene043475:CDS 45.0%
GAATGCACATCAAATGGTGG+TGG + chr2.2:8532375-8532394 MS.gene043475:CDS 45.0%
GGAAGAGTAGTGATGAGCTT+AGG - chr2.2:8532096-8532115 None:intergenic 45.0%
GGTTCAATCACGAAGCTCTT+AGG + chr2.2:8531989-8532008 MS.gene043475:CDS 45.0%
GTGTCCAATTTGTCGAACCA+AGG + chr2.2:8532293-8532312 MS.gene043475:CDS 45.0%
TAATAGGGTGTGAGCTTGAG+TGG - chr2.2:8532046-8532065 None:intergenic 45.0%
TTAACAGAACCACCCAACAC+TGG + chr2.2:8532063-8532082 MS.gene043475:CDS 45.0%
!! CAAATGGTGGTGGTGTTAGT+GGG + chr2.2:8532385-8532404 MS.gene043475:CDS 45.0%
!! TCAAATGGTGGTGGTGTTAG+TGG + chr2.2:8532384-8532403 MS.gene043475:CDS 45.0%
TTAGGGTCGAGACCAGTGTT+GGG - chr2.2:8532078-8532097 None:intergenic 50.0%
!! CGTGAGGAGTACTAGAAGGT+TGG - chr2.2:8532482-8532501 None:intergenic 50.0%
CTTAGGGTCGAGACCAGTGT+TGG - chr2.2:8532079-8532098 None:intergenic 55.0%
CTTGAACTAGAGCCACGCGA+GGG + chr2.2:8532327-8532346 MS.gene043475:CDS 55.0%
GCTCTTAGGAGAGCAGCCAA+TGG + chr2.2:8532003-8532022 MS.gene043475:CDS 55.0%
GGTGAGTCTCACATCGCCAT+TGG - chr2.2:8532022-8532041 None:intergenic 55.0%
TAGGGTGTGAGCTTGAGTGG+CGG - chr2.2:8532043-8532062 None:intergenic 55.0%
TTCAAGCCTCGGCTCAACCT+TGG - chr2.2:8532313-8532332 None:intergenic 55.0%
! CAGCATTGAGCTCTTCTCGG+AGG + chr2.2:8532424-8532443 MS.gene043475:CDS 55.0%
!! CGTGGCTCTAGTTCAAGCCT+CGG - chr2.2:8532324-8532343 None:intergenic 55.0%
GCTTGAACTAGAGCCACGCG+AGG + chr2.2:8532326-8532345 MS.gene043475:CDS 60.0%
GTCGAACCAAGGTTGAGCCG+AGG + chr2.2:8532304-8532323 MS.gene043475:CDS 60.0%
AACAAAGTGGGGCCCTCGCG+TGG - chr2.2:8532342-8532361 None:intergenic 65.0%
! GGGTCGAGACCAGTGTTGGG+TGG - chr2.2:8532075-8532094 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 8531961 8532623 8531961 ID=MS.gene043475
chr2.2 mRNA 8531961 8532623 8531961 ID=MS.gene043475.t1;Parent=MS.gene043475
chr2.2 exon 8531961 8532623 8531961 ID=MS.gene043475.t1.exon1;Parent=MS.gene043475.t1
chr2.2 CDS 8531961 8532623 8531961 ID=cds.MS.gene043475.t1;Parent=MS.gene043475.t1
Gene Sequence

>MS.gene043475

ATGTTCGCTCTTCACAAGATCTACTCCAGGTTCAATCACGAAGCTCTTAGGAGAGCAGCCAATGGCGATGTGAGACTCACCGCCACTCAAGCTCACACCCTATTAACAGAACCACCCAACACTGGTCTCGACCCTAAGCTCATCACTACTCTTCCTACTTTCATCTTCAAACAAAAGCATCAAGAAGAAAATAACAATGTTTCCAATAATATTGTTGAATGTGCGGTGTGTTTGAGTTTATTGCAGGATGAAGAAATTATGAGGTTGCTTCCGAATTGTAAGCATAGTTTTCATATGGGTTGTATTGACAAGTGGTTAGCTTCGCATTCAACGTGTCCAATTTGTCGAACCAAGGTTGAGCCGAGGCTTGAACTAGAGCCACGCGAGGGCCCCACTTTGTTTGAACCACCATCTGAATGCACATCAAATGGTGGTGGTGTTAGTGGGTCCCCCAAAGATATTTCAGCATTGAGCTCTTCTCGGAGGATTCTTATTAGGGATAGATCTTTAGGAAGAATCCAACCTTCTAGTACTCCTCACGATTATATTACAATTGATCATGATTTAGAGCGGCAATGGCTTTCTTCTTTAACAATAGAAAGTATAGATTTGGAAAGAAACTATGCATCATTTAAGGTTAGCCAAAGTCACCAACTTCATTGA
Protein sequence

>MS.gene043475.t1

MFALHKIYSRFNHEALRRAANGDVRLTATQAHTLLTEPPNTGLDPKLITTLPTFIFKQKHQEENNNVSNNIVECAVCLSLLQDEEIMRLLPNCKHSFHMGCIDKWLASHSTCPICRTKVEPRLELEPREGPTLFEPPSECTSNGGGVSGSPKDISALSSSRRILIRDRSLGRIQPSSTPHDYITIDHDLERQWLSSLTIESIDLERNYASFKVSQSHQLH