AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene043555

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene043555.t1 MTR_2g093190 92.544 228 16 1 1 227 1 228 3.42e-158 437
MS.gene043555.t1 MTR_1g108510 90.351 228 21 1 1 227 1 228 9.61e-156 431
MS.gene043555.t1 MTR_3g030770 89.912 228 22 1 1 227 1 228 5.26e-154 426
MS.gene043555.t1 MTR_1g108580 88.596 228 25 1 1 227 1 228 5.45e-152 421
MS.gene043555.t1 MTR_1g105920 76.471 221 41 3 1 212 1 219 9.39e-116 330
MS.gene043555.t1 MTR_8g043650 74.026 231 49 3 1 222 1 229 1.62e-114 327
MS.gene043555.t1 MTR_1g105910 72.340 235 46 4 1 226 1 225 8.56e-114 325
MS.gene043555.t1 MTR_2g030740 73.303 221 48 3 1 212 1 219 2.90e-111 319
MS.gene043555.t1 MTR_1g012570 72.851 221 49 3 1 212 1 219 1.44e-109 314
MS.gene043555.t1 MTR_3g052920 71.493 221 52 3 1 212 1 219 3.86e-107 308
MS.gene043555.t1 MTR_0121s0080 67.660 235 57 4 1 226 1 225 1.46e-104 301
MS.gene043555.t1 MTR_1g075600 63.830 235 66 4 1 226 1 225 7.28e-99 287
MS.gene043555.t1 MTR_1g077360 61.702 235 71 4 1 226 1 225 2.89e-96 281
MS.gene043555.t1 MTR_5g045560 62.979 235 68 4 1 226 1 225 3.27e-95 278
MS.gene043555.t1 MTR_1g105905 66.972 218 53 4 18 226 1 208 1.00e-94 276
MS.gene043555.t1 MTR_5g053390 62.979 235 68 4 1 226 1 225 1.78e-94 276
MS.gene043555.t1 MTR_2g085280 60.851 235 73 4 1 226 1 225 3.50e-92 270
MS.gene043555.t1 MTR_2g085250 61.674 227 76 3 1 218 1 225 6.25e-92 270
MS.gene043555.t1 MTR_3g052870 66.968 221 43 6 1 212 1 200 2.52e-91 268
MS.gene043555.t1 MTR_1g106070 74.176 182 38 2 1 173 1 182 2.68e-91 266
MS.gene043555.t1 MTR_5g055100 60.000 235 75 4 1 226 1 225 1.38e-90 266
MS.gene043555.t1 MTR_7g062350 64.706 221 58 5 16 226 27 237 1.45e-88 261
MS.gene043555.t1 MTR_0121s0100 85.606 132 18 1 1 131 1 132 8.19e-76 225
MS.gene043555.t1 MTR_3g030780 71.212 132 37 1 1 131 1 132 3.22e-61 188
MS.gene043555.t1 MTR_3g080940 53.714 175 78 2 9 182 9 181 6.79e-60 187
MS.gene043555.t1 MTR_1g075570 59.195 174 48 3 18 182 1 160 1.57e-53 169
MS.gene043555.t1 MTR_8g086290 43.902 164 83 2 5 165 8 165 5.61e-41 138
MS.gene043555.t1 MTR_3g067910 62.136 103 38 1 21 122 2 104 3.18e-38 129
MS.gene043555.t1 MTR_2g105290 40.373 161 93 1 5 165 8 165 3.63e-37 128
MS.gene043555.t1 MTR_7g028448 42.604 169 86 3 5 173 8 165 1.68e-33 119
MS.gene043555.t1 MTR_4g036915 42.604 169 86 3 5 173 8 165 1.68e-33 119
MS.gene043555.t1 MTR_1g108500 57.143 112 26 2 8 117 94 185 1.39e-30 115
MS.gene043555.t1 MTR_4g127140 39.181 171 91 3 5 165 8 175 3.73e-27 103
MS.gene043555.t1 MTR_1g063160 51.250 80 39 0 9 88 2 81 1.87e-24 95.9
MS.gene043555.t1 MTR_3g067875 76.786 56 13 0 18 73 1 56 1.99e-24 92.4
MS.gene043555.t1 MTR_4g131030 40.517 116 53 2 9 108 2 117 2.31e-23 94.0
MS.gene043555.t1 MTR_8g079502 57.971 69 29 0 9 77 2 70 3.50e-23 92.4
MS.gene043555.t1 MTR_1g054265 50.633 79 39 0 9 87 2 80 4.39e-23 92.0
MS.gene043555.t1 MTR_1g047550 57.971 69 29 0 9 77 2 70 4.88e-23 92.0
MS.gene043555.t1 MTR_3g067915 50.000 94 46 1 33 125 3 96 3.67e-22 87.4
MS.gene043555.t1 MTR_4g094632 42.857 105 59 1 9 113 2 105 4.47e-22 89.0
MS.gene043555.t1 MTR_8g046350 39.535 129 71 3 9 134 2 126 6.06e-22 89.0
MS.gene043555.t1 MTR_8g051580 41.600 125 69 2 9 130 2 125 1.91e-21 87.8
MS.gene043555.t1 MTR_4g094638 42.453 106 59 1 9 112 2 107 1.08e-20 85.9
MS.gene043555.t1 MTR_3g067870 63.492 63 23 0 16 78 83 145 8.86e-20 82.8
MS.gene043555.t1 MTR_5g066180 32.727 165 87 4 9 170 2 145 1.19e-19 84.3
MS.gene043555.t1 MTR_4g093970 34.940 166 82 5 10 152 29 191 8.90e-19 82.0
MS.gene043555.t1 MTR_8g033270 48.101 79 39 1 9 85 2 80 2.16e-18 81.3
MS.gene043555.t1 MTR_5g032520 34.043 141 81 4 10 144 3 137 2.34e-18 80.9
MS.gene043555.t1 MTR_8g022970 33.553 152 99 2 8 158 17 167 2.68e-18 79.7
MS.gene043555.t1 MTR_3g452380 36.800 125 78 1 3 126 11 135 3.43e-18 80.9
MS.gene043555.t1 MTR_3g005530 50.000 68 34 0 9 76 2 69 3.47e-18 80.5
MS.gene043555.t1 MTR_4g102530 52.239 67 32 0 10 76 3 69 3.82e-18 79.7
MS.gene043555.t1 MTR_8g033220 28.505 214 140 5 10 215 3 211 4.76e-18 80.1
MS.gene043555.t1 MTR_8g033220 28.505 214 140 5 10 215 3 211 4.92e-18 80.1
MS.gene043555.t1 MTR_0003s0590 51.471 68 33 0 9 76 2 69 6.75e-18 80.1
MS.gene043555.t1 MTR_5g032150 27.982 218 132 5 9 204 2 216 6.81e-18 79.7
MS.gene043555.t1 MTR_1g053070 50.000 68 34 0 9 76 2 69 1.08e-17 79.3
MS.gene043555.t1 MTR_3g102570 42.574 101 56 2 9 108 2 101 1.75e-17 80.1
MS.gene043555.t1 MTR_8g087860 36.585 123 75 2 4 125 15 135 3.13e-17 78.2
MS.gene043555.t1 MTR_2g017865 39.216 102 62 0 9 110 17 118 3.36e-17 78.2
MS.gene043555.t1 MTR_1g101970 50.000 68 34 0 9 76 2 69 5.30e-17 76.3
MS.gene043555.t1 MTR_2g009890 48.529 68 35 0 9 76 2 69 7.44e-17 77.8
MS.gene043555.t1 MTR_4g109830 46.377 69 36 1 9 76 2 70 7.96e-17 76.6
MS.gene043555.t1 MTR_7g075870 50.746 67 33 0 10 76 3 69 8.99e-17 76.3
MS.gene043555.t1 MTR_5g031000 48.529 68 35 0 9 76 2 69 2.12e-16 75.5
MS.gene043555.t1 MTR_5g031000 48.529 68 35 0 9 76 2 69 2.14e-16 75.9
MS.gene043555.t1 MTR_6g464720 47.826 69 35 1 9 76 2 70 2.41e-16 75.9
MS.gene043555.t1 MTR_7g075870 50.000 68 33 1 10 76 3 70 1.46e-15 73.2
MS.gene043555.t1 MTR_4g036050 29.167 216 122 8 9 208 2 202 1.80e-15 72.4
MS.gene043555.t1 MTR_1g038300 48.571 70 34 1 9 76 2 71 1.82e-15 73.2
MS.gene043555.t1 MTR_2g461710 53.571 56 26 0 9 64 2 57 2.05e-15 68.6
MS.gene043555.t1 MTR_6g015975 46.377 69 36 1 9 76 2 70 2.47e-15 73.2
MS.gene043555.t1 MTR_7g016600 47.887 71 34 2 7 76 2 70 2.54e-15 73.2
MS.gene043555.t1 MTR_8g066260 44.928 69 37 1 9 76 2 70 2.86e-15 72.8
MS.gene043555.t1 MTR_4g036050 29.048 210 116 9 9 208 2 188 5.13e-15 70.9
MS.gene043555.t1 MTR_5g046870 46.377 69 36 1 9 76 2 70 5.34e-15 68.9
MS.gene043555.t1 MTR_4g109810 28.696 230 119 10 9 208 2 216 6.34e-15 71.6
MS.gene043555.t1 MTR_7g016630 43.478 69 38 1 9 76 2 70 6.61e-15 72.0
MS.gene043555.t1 MTR_4g084740 44.872 78 42 1 9 85 2 79 7.17e-15 72.8
MS.gene043555.t1 MTR_5g046790 42.029 69 39 1 9 76 2 70 9.52e-15 70.9
MS.gene043555.t1 MTR_3g088615 33.333 102 47 2 9 89 2 103 1.21e-14 69.7
MS.gene043555.t1 MTR_1g029670 42.857 70 38 1 9 76 2 71 1.26e-14 69.7
MS.gene043555.t1 MTR_5g066960 47.368 57 30 0 9 65 2 58 3.39e-14 65.5
MS.gene043555.t1 MTR_3g084980 53.571 56 26 0 9 64 2 57 3.46e-14 69.7
MS.gene043555.t1 MTR_8g097090 51.786 56 27 0 9 64 2 57 5.80e-14 69.3
MS.gene043555.t1 MTR_7g075850 31.098 164 91 6 9 159 2 156 6.04e-14 69.3
MS.gene043555.t1 MTR_3g109930 30.864 162 99 3 27 182 20 174 7.40e-14 67.8
MS.gene043555.t1 MTR_3g113030 29.940 167 79 5 9 162 2 143 9.09e-14 68.6
MS.gene043555.t1 MTR_4g036050 31.081 148 86 5 9 155 2 134 2.26e-13 66.2
MS.gene043555.t1 MTR_4g036050 42.857 70 39 1 9 77 2 71 2.35e-13 66.6
MS.gene043555.t1 MTR_3g437790 31.690 142 81 4 26 158 30 164 6.48e-13 65.5
MS.gene043555.t1 MTR_5g021270 45.714 70 36 1 9 76 2 71 1.02e-12 65.5
MS.gene043555.t1 MTR_5g021270 45.714 70 36 1 9 76 2 71 1.03e-12 65.5
MS.gene043555.t1 MTR_4g108720 34.127 126 67 3 9 130 2 115 4.12e-12 65.1
MS.gene043555.t1 MTR_4g093030 37.895 95 43 2 9 87 2 96 7.50e-12 62.0
MS.gene043555.t1 MTR_1g041615 41.748 103 54 3 20 122 17 113 9.18e-12 60.8
MS.gene043555.t1 MTR_4g051538 32.484 157 88 5 1 154 1 142 2.53e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene043555.t1 AT5G60440 55.135 185 75 4 4 180 2 186 2.27e-58 186
MS.gene043555.t1 AT2G24840 48.193 166 74 3 9 167 63 223 6.77e-44 148
MS.gene043555.t1 AT1G01530 45.355 183 93 4 4 182 2 181 9.86e-42 142
MS.gene043555.t1 AT4G36590 42.690 171 89 3 4 166 2 171 4.52e-39 135
MS.gene043555.t1 AT1G65360 40.659 182 102 4 4 180 2 182 2.95e-37 130
MS.gene043555.t1 AT2G34440 38.095 147 90 1 9 155 2 147 2.64e-26 100
MS.gene043555.t1 AT3G66656 42.017 119 64 1 9 122 2 120 2.51e-24 95.5
MS.gene043555.t1 AT3G04100 32.990 194 116 6 1 182 1 192 3.12e-23 93.2
MS.gene043555.t1 AT1G72350 32.258 186 87 5 9 187 43 196 1.40e-22 92.0
MS.gene043555.t1 AT2G45660 34.969 163 87 5 10 161 3 157 2.86e-20 84.3
MS.gene043555.t1 AT4G09960 40.164 122 66 3 9 126 2 120 9.29e-20 84.3
MS.gene043555.t1 AT4G09960 40.164 122 66 3 9 126 2 120 1.40e-19 84.3
MS.gene043555.t1 AT4G09960 40.164 122 66 3 9 126 3 121 1.41e-19 84.3
MS.gene043555.t1 AT4G09960 40.164 122 66 3 9 126 12 130 1.75e-19 84.3
MS.gene043555.t1 AT2G45660 34.783 161 86 5 10 159 3 155 2.01e-19 83.6
MS.gene043555.t1 AT4G09960 40.164 122 66 3 9 126 28 146 2.15e-19 84.3
MS.gene043555.t1 AT4G24540 35.374 147 79 3 9 155 2 132 3.08e-19 83.2
MS.gene043555.t1 AT1G29962 29.825 171 113 2 5 168 4 174 3.83e-19 82.0
MS.gene043555.t1 AT4G09960 40.164 122 66 3 9 126 97 215 4.81e-19 84.3
MS.gene043555.t1 AT1G28460 29.167 168 115 3 5 168 4 171 1.04e-18 80.9
MS.gene043555.t1 AT2G45650 51.471 68 33 0 9 76 2 69 1.81e-18 81.6
MS.gene043555.t1 AT2G22540 52.239 67 32 0 10 76 3 69 2.35e-18 81.3
MS.gene043555.t1 AT2G22540 52.239 67 32 0 10 76 3 69 2.35e-18 81.3
MS.gene043555.t1 AT5G13790 52.941 68 32 0 9 76 2 69 2.43e-18 81.6
MS.gene043555.t1 AT5G13790 52.941 68 32 0 9 76 2 69 2.80e-18 81.6
MS.gene043555.t1 AT4G18960 39.623 106 55 1 2 107 11 107 2.91e-18 81.3
MS.gene043555.t1 AT3G57390 50.000 68 34 0 9 76 2 69 4.37e-18 80.1
MS.gene043555.t1 AT5G51870 53.731 67 31 0 10 76 3 69 4.89e-18 79.0
MS.gene043555.t1 AT5G51870 53.731 67 31 0 10 76 3 69 6.84e-18 79.3
MS.gene043555.t1 AT3G57230 47.059 68 36 0 9 76 2 69 7.97e-18 77.4
MS.gene043555.t1 AT3G57390 50.000 68 34 0 9 76 2 69 9.22e-18 79.7
MS.gene043555.t1 AT4G22950 52.239 67 32 0 10 76 3 69 1.04e-17 77.8
MS.gene043555.t1 AT5G51870 51.389 72 35 0 5 76 21 92 1.04e-17 78.6
MS.gene043555.t1 AT5G51870 53.731 67 31 0 10 76 3 69 1.14e-17 79.0
MS.gene043555.t1 AT5G51870 53.731 67 31 0 10 76 13 79 1.39e-17 79.0
MS.gene043555.t1 AT5G10140 52.174 69 32 1 9 76 2 70 1.49e-17 77.4
MS.gene043555.t1 AT5G62165 50.746 67 33 0 10 76 3 69 1.65e-17 75.5
MS.gene043555.t1 AT5G62165 50.746 67 33 0 10 76 3 69 1.84e-17 77.0
MS.gene043555.t1 AT5G62165 50.746 67 33 0 10 76 3 69 1.84e-17 77.0
MS.gene043555.t1 AT5G62165 50.746 67 33 0 10 76 3 69 1.84e-17 77.0
MS.gene043555.t1 AT2G42830 49.333 75 36 1 2 76 12 84 1.85e-17 79.0
MS.gene043555.t1 AT2G42830 49.333 75 36 1 2 76 12 84 1.91e-17 79.0
MS.gene043555.t1 AT5G10140 52.174 69 32 1 9 76 2 70 2.35e-17 77.0
MS.gene043555.t1 AT5G62165 50.746 67 33 0 10 76 3 69 2.55e-17 76.3
MS.gene043555.t1 AT5G62165 50.746 67 33 0 10 76 3 69 2.55e-17 76.3
MS.gene043555.t1 AT5G62165 50.746 67 33 0 10 76 3 69 2.55e-17 76.3
MS.gene043555.t1 AT5G62165 50.746 67 33 0 10 76 3 69 2.55e-17 76.3
MS.gene043555.t1 AT5G62165 50.746 67 33 0 10 76 3 69 2.55e-17 76.3
MS.gene043555.t1 AT5G10140 52.174 69 32 1 9 76 2 70 2.63e-17 77.0
MS.gene043555.t1 AT5G10140 52.174 69 32 1 9 76 2 70 2.93e-17 77.4
MS.gene043555.t1 AT4G22950 52.239 67 32 0 10 76 3 69 3.58e-17 77.4
MS.gene043555.t1 AT4G22950 52.239 67 32 0 10 76 3 69 3.58e-17 77.4
MS.gene043555.t1 AT3G57230 47.059 68 36 0 9 76 2 69 3.66e-17 77.8
MS.gene043555.t1 AT3G57230 47.059 68 36 0 9 76 2 69 3.66e-17 77.8
MS.gene043555.t1 AT3G58780 49.333 75 36 1 2 76 12 84 3.78e-17 78.2
MS.gene043555.t1 AT3G58780 49.333 75 36 1 2 76 18 90 5.01e-17 77.8
MS.gene043555.t1 AT5G62165 50.746 67 33 0 10 76 3 69 5.51e-17 76.6
MS.gene043555.t1 AT5G62165 50.746 67 33 0 10 76 3 69 5.51e-17 76.6
MS.gene043555.t1 AT4G37940 47.059 68 36 0 9 76 2 69 5.51e-17 77.4
MS.gene043555.t1 AT5G62165 50.746 67 33 0 10 76 3 69 5.60e-17 77.0
MS.gene043555.t1 AT5G62165 50.746 67 33 0 10 76 3 69 5.60e-17 77.0
MS.gene043555.t1 AT5G62165 50.746 67 33 0 10 76 3 69 5.60e-17 77.0
MS.gene043555.t1 AT4G37940 47.059 68 36 0 9 76 2 69 5.95e-17 77.0
MS.gene043555.t1 AT3G61120 42.045 88 49 1 9 94 2 89 7.04e-17 77.4
MS.gene043555.t1 AT3G58780 49.333 75 36 1 2 76 12 84 7.46e-17 77.8
MS.gene043555.t1 AT4G37940 47.059 68 36 0 9 76 2 69 7.60e-17 75.9
MS.gene043555.t1 AT5G51860 52.239 67 32 0 10 76 3 69 1.04e-16 75.9
MS.gene043555.t1 AT5G51860 52.239 67 32 0 10 76 3 69 1.56e-16 75.5
MS.gene043555.t1 AT3G30260 44.928 69 37 1 9 76 2 70 2.23e-16 75.9
MS.gene043555.t1 AT2G22540 58.182 55 23 0 10 64 3 57 3.54e-16 75.1
MS.gene043555.t1 AT1G69120 42.045 88 41 3 7 86 2 87 3.56e-16 75.1
MS.gene043555.t1 AT1G26310 47.887 71 34 2 7 76 2 70 7.53e-16 74.7
MS.gene043555.t1 AT4G11880 50.000 68 33 1 10 76 3 70 7.82e-16 73.2
MS.gene043555.t1 AT4G11880 50.000 68 33 1 10 76 3 70 7.82e-16 73.2
MS.gene043555.t1 AT5G65050 47.826 69 35 1 9 76 2 70 7.91e-16 73.2
MS.gene043555.t1 AT1G69120 40.698 86 43 2 9 86 2 87 1.15e-15 73.9
MS.gene043555.t1 AT5G60910 46.377 69 36 1 9 76 2 70 1.24e-15 73.9
MS.gene043555.t1 AT1G77980 50.000 72 35 1 9 79 2 73 1.32e-15 74.7
MS.gene043555.t1 AT4G11880 50.000 68 33 1 10 76 3 70 1.38e-15 73.2
MS.gene043555.t1 AT4G11880 50.000 68 33 1 10 76 3 70 1.38e-15 73.2
MS.gene043555.t1 AT2G14210 44.928 69 37 1 9 76 2 70 1.64e-15 73.2
MS.gene043555.t1 AT1G77950 47.222 72 37 1 9 79 2 73 1.91e-15 73.6
MS.gene043555.t1 AT1G77950 47.222 72 37 1 9 79 2 73 1.91e-15 73.6
MS.gene043555.t1 AT1G77950 47.222 72 37 1 9 79 2 73 1.91e-15 73.6
MS.gene043555.t1 AT1G77950 47.222 72 37 1 9 79 2 73 1.91e-15 73.6
MS.gene043555.t1 AT2G14210 44.928 69 37 1 9 76 2 70 2.01e-15 73.2
MS.gene043555.t1 AT1G22130 36.441 118 72 3 9 124 2 118 2.08e-15 74.3
MS.gene043555.t1 AT5G65050 40.909 88 51 1 9 95 2 89 2.10e-15 72.4
MS.gene043555.t1 AT5G23260 50.667 75 35 1 5 77 14 88 2.20e-15 73.6
MS.gene043555.t1 AT3G58780 49.333 75 29 2 2 76 12 77 2.27e-15 73.2
MS.gene043555.t1 AT5G23260 50.667 75 35 1 5 77 14 88 2.31e-15 73.6
MS.gene043555.t1 AT5G65050 40.909 88 51 1 9 95 2 89 2.35e-15 72.0
MS.gene043555.t1 AT5G65050 40.909 88 51 1 9 95 2 89 2.64e-15 71.6
MS.gene043555.t1 AT5G65060 47.826 69 35 1 9 76 2 70 2.91e-15 71.6
MS.gene043555.t1 AT5G20240 47.619 63 33 0 9 71 2 64 3.54e-15 70.5
MS.gene043555.t1 AT3G58780 52.308 65 29 1 2 66 12 74 3.65e-15 73.2
MS.gene043555.t1 AT1G71692 46.377 69 36 1 10 77 3 71 4.28e-15 71.6
MS.gene043555.t1 AT5G23260 52.113 71 32 1 9 77 2 72 4.36e-15 72.4
MS.gene043555.t1 AT5G65060 47.826 69 35 1 9 76 2 70 4.53e-15 71.2
MS.gene043555.t1 AT5G65060 47.826 69 35 1 9 76 2 70 4.67e-15 71.2
MS.gene043555.t1 AT5G23260 52.113 71 32 1 9 77 2 72 4.83e-15 72.0
MS.gene043555.t1 AT5G20240 43.836 73 39 1 9 79 2 74 5.58e-15 71.2
MS.gene043555.t1 AT5G65070 42.029 69 39 1 9 76 2 70 6.24e-15 69.7
MS.gene043555.t1 AT5G15800 46.377 69 36 1 9 76 2 70 7.64e-15 71.6
MS.gene043555.t1 AT1G28450 28.488 172 114 4 5 168 4 174 9.12e-15 70.5
MS.gene043555.t1 AT5G65070 42.029 69 39 1 9 76 2 70 1.22e-14 70.5
MS.gene043555.t1 AT5G15800 46.377 69 36 1 9 76 2 70 1.32e-14 71.2
MS.gene043555.t1 AT2G03710 53.571 56 26 0 9 64 2 57 1.40e-14 69.7
MS.gene043555.t1 AT3G02310 46.377 69 36 1 9 76 2 70 1.62e-14 70.1
MS.gene043555.t1 AT3G54340 32.331 133 75 5 9 127 2 133 2.71e-14 70.1
MS.gene043555.t1 AT5G65070 42.029 69 39 1 9 76 2 70 2.92e-14 69.7
MS.gene043555.t1 AT5G65070 42.029 69 39 1 9 76 2 70 3.36e-14 69.3
MS.gene043555.t1 AT1G24260 51.786 56 27 0 9 64 2 57 3.51e-14 70.1
MS.gene043555.t1 AT1G24260 51.786 56 27 0 9 64 2 57 3.57e-14 70.1
MS.gene043555.t1 AT1G24260 51.786 56 27 0 9 64 2 57 3.69e-14 69.7
MS.gene043555.t1 AT5G49490 38.947 95 51 2 4 91 40 134 4.72e-14 70.1
MS.gene043555.t1 AT2G22630 44.118 68 38 0 9 76 2 69 4.91e-14 69.3
MS.gene043555.t1 AT2G22630 44.118 68 38 0 9 76 2 69 4.91e-14 69.3
MS.gene043555.t1 AT2G03710 53.571 56 26 0 9 64 2 57 6.21e-14 69.3
MS.gene043555.t1 AT2G03710 53.571 56 26 0 9 64 2 57 6.35e-14 69.3
MS.gene043555.t1 AT1G17310 52.703 74 33 1 8 81 47 118 6.41e-14 68.6
MS.gene043555.t1 AT3G02310 46.377 69 36 1 9 76 2 70 6.92e-14 68.9
MS.gene043555.t1 AT1G17310 52.703 74 33 1 8 81 58 129 9.49e-14 68.6
MS.gene043555.t1 AT1G47760 41.791 67 39 0 9 75 2 68 1.71e-13 67.0
MS.gene043555.t1 AT5G65070 47.368 57 30 0 9 65 2 58 2.19e-13 67.4
MS.gene043555.t1 AT1G18750 40.000 75 43 1 9 81 2 76 4.86e-13 67.8
MS.gene043555.t1 AT5G65080 42.029 69 39 1 9 76 9 77 5.12e-13 65.9
MS.gene043555.t1 AT1G18750 40.000 75 43 1 9 81 2 76 5.37e-13 67.8
MS.gene043555.t1 AT1G18750 40.000 75 43 1 9 81 2 76 5.51e-13 67.8
MS.gene043555.t1 AT4G37435 48.214 56 29 0 9 64 2 57 2.75e-12 63.5
MS.gene043555.t1 AT5G65080 43.548 62 35 0 1 62 1 62 3.11e-12 63.9
MS.gene043555.t1 AT2G03060 30.769 169 93 8 9 158 2 165 4.73e-12 65.1
MS.gene043555.t1 AT2G03060 30.769 169 93 8 9 158 2 165 4.95e-12 64.7
MS.gene043555.t1 AT2G03060 30.769 169 93 8 9 158 2 165 4.95e-12 64.7
MS.gene043555.t1 AT2G03060 30.769 169 93 8 9 158 2 165 4.95e-12 64.7
MS.gene043555.t1 AT5G49420 39.241 79 44 1 4 78 2 80 7.60e-12 64.3
MS.gene043555.t1 AT1G69540 41.892 74 42 1 9 81 2 75 1.81e-11 63.2
MS.gene043555.t1 AT1G69540 33.028 109 66 2 9 116 2 104 2.33e-11 62.8
MS.gene043555.t1 AT1G77080 49.275 69 34 1 9 76 2 70 3.78e-11 60.5
MS.gene043555.t1 AT1G77080 49.275 69 34 1 9 76 2 70 5.60e-11 59.7
MS.gene043555.t1 AT1G46408 43.421 76 39 2 7 78 2 77 7.66e-11 60.8

Find 51 sgRNAs with CRISPR-Local

Find 64 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTGAGGATTTGGTTGATTA+TGG 0.237975 2.2:+7674302 None:intergenic
TTGCAGCCTCATTTGTTTGA+TGG 0.293834 2.2:-7674232 MS.gene043555:CDS
TGAATTGCATGGTGTCGTTT+TGG 0.309643 2.2:+7674608 None:intergenic
TCACCATGGCTTCAATAATA+TGG 0.324358 2.2:-7674197 MS.gene043555:CDS
TGGTGGGCTTGTCCAGTTGA+TGG 0.339908 2.2:-7674454 MS.gene043555:CDS
TGAATTATTCAAGAAGGCTT+TGG 0.346261 2.2:-7674413 MS.gene043555:CDS
ATTTGAGTTTGTTGAGGATT+TGG 0.357675 2.2:+7674292 None:intergenic
TGGTCATCCCAATCTTGATA+TGG 0.365228 2.2:-7674662 MS.gene043555:CDS
CTCATCACCAATCTTCTTCT+CGG 0.374331 2.2:+7674513 None:intergenic
GTTTATGACCATATCAAGAT+TGG 0.391741 2.2:+7674654 None:intergenic
GCTTTGAGAAAGTCACTTGC+AGG 0.402119 2.2:+7674785 None:intergenic
GTCCAGTTGATGGGATGAAT+AGG 0.429804 2.2:-7674444 MS.gene043555:CDS
TCCAGTTGATGGGATGAATA+GGG 0.440779 2.2:-7674443 MS.gene043555:CDS
AGTGAGCTTTGCACCCTTTG+TGG 0.441727 2.2:-7674736 MS.gene043555:CDS
TCCCTATTCATCCCATCAAC+TGG 0.441893 2.2:+7674442 None:intergenic
AGGAAACGGAGGCTAAGTTT+TGG 0.459813 2.2:-7674474 MS.gene043555:CDS
GGTGGGCTTGTCCAGTTGAT+GGG 0.465063 2.2:-7674453 MS.gene043555:CDS
CTGGATGCCGAGAAGAAGAT+TGG 0.471167 2.2:-7674520 MS.gene043555:CDS
TTTATGACCATATCAAGATT+GGG 0.474817 2.2:+7674655 None:intergenic
TCAACTTGAATTATTCAAGA+AGG 0.483881 2.2:-7674419 MS.gene043555:CDS
TGAGGCTGCAATTGCAACAT+AGG 0.486430 2.2:+7674244 None:intergenic
GCCTTTCTTTGCGCTCGACA+TGG 0.498630 2.2:+7674855 None:intergenic
CTTTCTCAAAGCGTCGCAGC+GGG 0.500082 2.2:-7674774 MS.gene043555:CDS
ATTATTCAAGAAGGCTTTGG+AGG 0.515397 2.2:-7674410 MS.gene043555:CDS
ACAAAGGGTGCAAAGCTCAC+TGG 0.525840 2.2:+7674738 None:intergenic
AGCAGCATCTGCACCACAAA+GGG 0.530066 2.2:+7674723 None:intergenic
GAGCAATTTGAGCAAGGAAA+CGG 0.541309 2.2:-7674488 MS.gene043555:CDS
GCCATGTCGAGCGCAAAGAA+AGG 0.544835 2.2:-7674856 MS.gene043555:CDS
ACACCATATTATTGAAGCCA+TGG 0.549763 2.2:+7674194 None:intergenic
CTTGTTGTATTCTCACCTAG+TGG 0.572809 2.2:-7674700 MS.gene043555:CDS
GAGGCTGCAATTGCAACATA+GGG 0.578323 2.2:+7674245 None:intergenic
ATCAAGATTGGGATGACCAA+AGG 0.580409 2.2:+7674666 None:intergenic
ATTATGGAGATAAATGTTCG+AGG 0.580823 2.2:+7674318 None:intergenic
ATCGATCCATCAAACAAATG+AGG 0.583681 2.2:+7674226 None:intergenic
GGAAACATTTGAGTTTGTTG+AGG 0.589185 2.2:+7674286 None:intergenic
TTGAGAAAGTCACTTGCAGG+TGG 0.593625 2.2:+7674788 None:intergenic
TGTATTCTCACCTAGTGGAA+AGG 0.594205 2.2:-7674695 MS.gene043555:CDS
TCGAGCGCAAAGAAAGGCCG+AGG 0.597603 2.2:-7674850 MS.gene043555:CDS
GAGCAGCATCTGCACCACAA+AGG 0.622747 2.2:+7674722 None:intergenic
AACTCAAATCAACAACACGC+TGG 0.622750 2.2:-7674539 MS.gene043555:CDS
GTTCACGCACGTTGGCATTG+CGG 0.623421 2.2:+7674575 None:intergenic
AAGGAAAATACCTTTCCACT+AGG 0.624124 2.2:+7674685 None:intergenic
ATATTATTGAAGCCATGGTG+AGG 0.642989 2.2:+7674199 None:intergenic
ACTTTCTCAAAGCGTCGCAG+CGG 0.643826 2.2:-7674775 MS.gene043555:CDS
CGACACCATGCAATTCATTG+AGG 0.645467 2.2:-7674602 MS.gene043555:CDS
CAATTTGAGCAAGGAAACGG+AGG 0.653616 2.2:-7674485 MS.gene043555:CDS
TGAGCTGAGCAATTTGAGCA+AGG 0.660156 2.2:-7674494 MS.gene043555:CDS
GTGAGCCTCAATGAATTGCA+TGG 0.661389 2.2:+7674597 None:intergenic
AGCATTGAGTTCACGCACGT+TGG 0.672189 2.2:+7674567 None:intergenic
GTGGGACGAGAGAAAGATAG+CGG 0.705690 2.2:+7674632 None:intergenic
GGATCGATGATGCCTCACCA+TGG 0.718921 2.2:-7674211 MS.gene043555:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! TCAACTTGAATTATTCAAGA+AGG - chr2.2:7674626-7674645 MS.gene043555:CDS 25.0%
! TTTATGACCATATCAAGATT+GGG + chr2.2:7674393-7674412 None:intergenic 25.0%
!!! ATAGGGTTTTGAAAAATTTG+TGG + chr2.2:7674786-7674805 None:intergenic 25.0%
AACAAAAAATGGAAGAGTTC+GGG + chr2.2:7674694-7674713 None:intergenic 30.0%
ATTATGGAGATAAATGTTCG+AGG + chr2.2:7674730-7674749 None:intergenic 30.0%
CAACAAAAAATGGAAGAGTT+CGG + chr2.2:7674695-7674714 None:intergenic 30.0%
GTTTATGACCATATCAAGAT+TGG + chr2.2:7674394-7674413 None:intergenic 30.0%
TGAATTATTCAAGAAGGCTT+TGG - chr2.2:7674632-7674651 MS.gene043555:CDS 30.0%
!! ATTTGAGTTTGTTGAGGATT+TGG + chr2.2:7674756-7674775 None:intergenic 30.0%
!! TCTTTTTCATCTCGATCTTT+TGG + chr2.2:7674224-7674243 None:intergenic 30.0%
AAGGAAAATACCTTTCCACT+AGG + chr2.2:7674363-7674382 None:intergenic 35.0%
ACACCATATTATTGAAGCCA+TGG + chr2.2:7674854-7674873 None:intergenic 35.0%
ATATTATTGAAGCCATGGTG+AGG + chr2.2:7674849-7674868 None:intergenic 35.0%
ATCGATCCATCAAACAAATG+AGG + chr2.2:7674822-7674841 None:intergenic 35.0%
TCACCATGGCTTCAATAATA+TGG - chr2.2:7674848-7674867 MS.gene043555:CDS 35.0%
! ATTATTCAAGAAGGCTTTGG+AGG - chr2.2:7674635-7674654 MS.gene043555:CDS 35.0%
! GTTGAGGATTTGGTTGATTA+TGG + chr2.2:7674746-7674765 None:intergenic 35.0%
!! GAAGCATTGCCAACAAAAAA+TGG + chr2.2:7674705-7674724 None:intergenic 35.0%
!! GGAAACATTTGAGTTTGTTG+AGG + chr2.2:7674762-7674781 None:intergenic 35.0%
!!! AGTGGAAAGGTATTTTCCTT+TGG - chr2.2:7674363-7674382 MS.gene043555:CDS 35.0%
!!! CGAACTCTTCCATTTTTTGT+TGG - chr2.2:7674693-7674712 MS.gene043555:CDS 35.0%
!!! GGGTTTTGAAAAATTTGTGG+TGG + chr2.2:7674783-7674802 None:intergenic 35.0%
AACTCAAATCAACAACACGC+TGG - chr2.2:7674506-7674525 MS.gene043555:CDS 40.0%
ATCAAGATTGGGATGACCAA+AGG + chr2.2:7674382-7674401 None:intergenic 40.0%
CTCATCACCAATCTTCTTCT+CGG + chr2.2:7674535-7674554 None:intergenic 40.0%
GAGCAATTTGAGCAAGGAAA+CGG - chr2.2:7674557-7674576 MS.gene043555:CDS 40.0%
TGGTCATCCCAATCTTGATA+TGG - chr2.2:7674383-7674402 MS.gene043555:CDS 40.0%
TGTATTCTCACCTAGTGGAA+AGG - chr2.2:7674350-7674369 MS.gene043555:CDS 40.0%
TTGCAGCCTCATTTGTTTGA+TGG - chr2.2:7674813-7674832 MS.gene043555:CDS 40.0%
! CTTGTTGTATTCTCACCTAG+TGG - chr2.2:7674345-7674364 MS.gene043555:CDS 40.0%
!! TCCAGTTGATGGGATGAATA+GGG - chr2.2:7674602-7674621 MS.gene043555:CDS 40.0%
!!! AATTGCATGGTGTCGTTTTG+GGG + chr2.2:7674438-7674457 None:intergenic 40.0%
!!! GAATTGCATGGTGTCGTTTT+GGG + chr2.2:7674439-7674458 None:intergenic 40.0%
!!! TGAATTGCATGGTGTCGTTT+TGG + chr2.2:7674440-7674459 None:intergenic 40.0%
CAATTTGAGCAAGGAAACGG+AGG - chr2.2:7674560-7674579 MS.gene043555:CDS 45.0%
CGACACCATGCAATTCATTG+AGG - chr2.2:7674443-7674462 MS.gene043555:CDS 45.0%
GAGGCTGCAATTGCAACATA+GGG + chr2.2:7674803-7674822 None:intergenic 45.0%
GTGAGCCTCAATGAATTGCA+TGG + chr2.2:7674451-7674470 None:intergenic 45.0%
TCCCTATTCATCCCATCAAC+TGG + chr2.2:7674606-7674625 None:intergenic 45.0%
TGAGCTGAGCAATTTGAGCA+AGG - chr2.2:7674551-7674570 MS.gene043555:CDS 45.0%
TGAGGCTGCAATTGCAACAT+AGG + chr2.2:7674804-7674823 None:intergenic 45.0%
TTGAGAAAGTCACTTGCAGG+TGG + chr2.2:7674260-7674279 None:intergenic 45.0%
! AGGAAACGGAGGCTAAGTTT+TGG - chr2.2:7674571-7674590 MS.gene043555:CDS 45.0%
!! AAACGGAGGCTAAGTTTTGG+TGG - chr2.2:7674574-7674593 MS.gene043555:CDS 45.0%
!! AACGGAGGCTAAGTTTTGGT+GGG - chr2.2:7674575-7674594 MS.gene043555:CDS 45.0%
!! GCTTTGAGAAAGTCACTTGC+AGG + chr2.2:7674263-7674282 None:intergenic 45.0%
!! GTCCAGTTGATGGGATGAAT+AGG - chr2.2:7674601-7674620 MS.gene043555:CDS 45.0%
AGCAGCATCTGCACCACAAA+GGG + chr2.2:7674325-7674344 None:intergenic 50.0%
AGTGAGCTTTGCACCCTTTG+TGG - chr2.2:7674309-7674328 MS.gene043555:CDS 50.0%
CTGGATGCCGAGAAGAAGAT+TGG - chr2.2:7674525-7674544 MS.gene043555:CDS 50.0%
GTGGGACGAGAGAAAGATAG+CGG + chr2.2:7674416-7674435 None:intergenic 50.0%
! ACAAAGGGTGCAAAGCTCAC+TGG + chr2.2:7674310-7674329 None:intergenic 50.0%
! AGCATTGAGTTCACGCACGT+TGG + chr2.2:7674481-7674500 None:intergenic 50.0%
! TCTCGATCTTTTGGCGACCT+CGG + chr2.2:7674215-7674234 None:intergenic 50.0%
!! ACTTTCTCAAAGCGTCGCAG+CGG - chr2.2:7674270-7674289 MS.gene043555:CDS 50.0%
GAGCAGCATCTGCACCACAA+AGG + chr2.2:7674326-7674345 None:intergenic 55.0%
GGATCGATGATGCCTCACCA+TGG - chr2.2:7674834-7674853 MS.gene043555:CDS 55.0%
GTTCACGCACGTTGGCATTG+CGG + chr2.2:7674473-7674492 None:intergenic 55.0%
! GGTGGGCTTGTCCAGTTGAT+GGG - chr2.2:7674592-7674611 MS.gene043555:CDS 55.0%
!! CTTTCTCAAAGCGTCGCAGC+GGG - chr2.2:7674271-7674290 MS.gene043555:CDS 55.0%
!! TGGTGGGCTTGTCCAGTTGA+TGG - chr2.2:7674591-7674610 MS.gene043555:CDS 55.0%
!!! GCATGGTGTCGTTTTGGGGT+GGG + chr2.2:7674434-7674453 None:intergenic 55.0%
!!! TGCATGGTGTCGTTTTGGGG+TGG + chr2.2:7674435-7674454 None:intergenic 55.0%
TCGAGCGCAAAGAAAGGCCG+AGG - chr2.2:7674195-7674214 MS.gene043555:CDS 60.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 7674192 7674875 7674192 ID=MS.gene043555
chr2.2 mRNA 7674192 7674875 7674192 ID=MS.gene043555.t1;Parent=MS.gene043555
chr2.2 exon 7674192 7674875 7674192 ID=MS.gene043555.t1.exon1;Parent=MS.gene043555.t1
chr2.2 CDS 7674192 7674875 7674192 ID=cds.MS.gene043555.t1;Parent=MS.gene043555.t1
Gene Sequence

>MS.gene043555

ATGTCGAGCGCAAAGAAAGGCCGAGGTCGCCAAAAGATCGAGATGAAAAAGATGAGCAACGAGAGCCACCTGCAAGTGACTTTCTCAAAGCGTCGCAGCGGGCTCTTCAAGAAAGCCAGTGAGCTTTGCACCCTTTGTGGTGCAGATGCTGCTCTTGTTGTATTCTCACCTAGTGGAAAGGTATTTTCCTTTGGTCATCCCAATCTTGATATGGTCATAAACCGCTATCTTTCTCTCGTCCCACCCCAAAACGACACCATGCAATTCATTGAGGCTCACCGCAATGCCAACGTGCGTGAACTCAATGCTCAACTAACTCAAATCAACAACACGCTGGATGCCGAGAAGAAGATTGGTGATGAGCTGAGCAATTTGAGCAAGGAAACGGAGGCTAAGTTTTGGTGGGCTTGTCCAGTTGATGGGATGAATAGGGATCAACTTGAATTATTCAAGAAGGCTTTGGAGGAGCTTAAGAAACTTGTAATTCAGCATGCTGCTACCCGAACTCTTCCATTTTTTGTTGGCAATGCTTCATCCTCGAACATTTATCTCCATAATCAACCAAATCCTCAACAAACTCAAATGTTTCCACCACAAATTTTTCAAAACCCTATGTTGCAATTGCAGCCTCATTTGTTTGATGGATCGATGATGCCTCACCATGGCTTCAATAATATGGTGTAA
Protein sequence

>MS.gene043555.t1

MSSAKKGRGRQKIEMKKMSNESHLQVTFSKRRSGLFKKASELCTLCGADAALVVFSPSGKVFSFGHPNLDMVINRYLSLVPPQNDTMQFIEAHRNANVRELNAQLTQINNTLDAEKKIGDELSNLSKETEAKFWWACPVDGMNRDQLELFKKALEELKKLVIQHAATRTLPFFVGNASSSNIYLHNQPNPQQTQMFPPQIFQNPMLQLQPHLFDGSMMPHHGFNNMV