Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene04360.t1 | XP_003600425.1 | 99.2 | 476 | 4 | 0 | 1 | 476 | 1 | 476 | 1.60E-273 | 951.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene04360.t1 | O65583 | 84.2 | 467 | 72 | 2 | 4 | 468 | 3 | 469 | 1.1e-230 | 800.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene04360.t1 | G7IY62 | 99.2 | 476 | 4 | 0 | 1 | 476 | 1 | 476 | 1.1e-273 | 951.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene79193 | MS.gene04360 | PPI |
MS.gene04360 | MS.gene79193 | PPI |
MS.gene040387 | MS.gene04360 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene04360.t1 | MTR_3g061030 | 99.160 | 476 | 4 | 0 | 1 | 476 | 1 | 476 | 0.0 | 970 |
MS.gene04360.t1 | MTR_5g096660 | 85.381 | 472 | 66 | 2 | 3 | 471 | 2 | 473 | 0.0 | 840 |
MS.gene04360.t1 | MTR_3g061030 | 99.512 | 410 | 2 | 0 | 67 | 476 | 1 | 410 | 0.0 | 835 |
MS.gene04360.t1 | MTR_7g029450 | 74.895 | 474 | 112 | 3 | 1 | 467 | 1 | 474 | 0.0 | 731 |
MS.gene04360.t1 | MTR_4g103620 | 73.742 | 457 | 105 | 3 | 13 | 467 | 10 | 453 | 0.0 | 692 |
MS.gene04360.t1 | MTR_6g021580 | 41.622 | 185 | 99 | 4 | 32 | 215 | 21 | 197 | 3.72e-39 | 142 |
MS.gene04360.t1 | MTR_8g069865 | 30.168 | 179 | 114 | 4 | 50 | 226 | 67 | 236 | 2.36e-16 | 82.4 |
MS.gene04360.t1 | MTR_4g020090 | 26.733 | 202 | 144 | 4 | 268 | 465 | 80 | 281 | 7.53e-15 | 75.1 |
MS.gene04360.t1 | MTR_4g073890 | 29.050 | 179 | 116 | 4 | 50 | 226 | 91 | 260 | 1.20e-14 | 77.0 |
MS.gene04360.t1 | MTR_4g073890 | 29.050 | 179 | 116 | 4 | 50 | 226 | 91 | 260 | 1.42e-14 | 76.3 |
MS.gene04360.t1 | MTR_4g112790 | 29.609 | 179 | 115 | 4 | 50 | 226 | 72 | 241 | 2.85e-14 | 75.9 |
MS.gene04360.t1 | MTR_4g112790 | 29.609 | 179 | 115 | 4 | 50 | 226 | 72 | 241 | 4.02e-14 | 75.1 |
MS.gene04360.t1 | MTR_5g027530 | 26.582 | 158 | 115 | 1 | 105 | 262 | 137 | 293 | 5.93e-12 | 67.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene04360.t1 | AT4G26510 | 84.154 | 467 | 72 | 2 | 4 | 468 | 3 | 469 | 0.0 | 814 |
MS.gene04360.t1 | AT4G26510 | 84.154 | 467 | 72 | 2 | 4 | 468 | 3 | 469 | 0.0 | 814 |
MS.gene04360.t1 | AT4G26510 | 84.154 | 467 | 72 | 2 | 4 | 468 | 3 | 469 | 0.0 | 814 |
MS.gene04360.t1 | AT4G26510 | 84.154 | 467 | 72 | 2 | 4 | 468 | 3 | 469 | 0.0 | 814 |
MS.gene04360.t1 | AT1G55810 | 81.876 | 469 | 78 | 3 | 3 | 468 | 2 | 466 | 0.0 | 795 |
MS.gene04360.t1 | AT1G55810 | 81.876 | 469 | 78 | 3 | 3 | 468 | 2 | 466 | 0.0 | 795 |
MS.gene04360.t1 | AT1G55810 | 81.876 | 469 | 78 | 3 | 3 | 468 | 2 | 466 | 0.0 | 795 |
MS.gene04360.t1 | AT1G55810 | 78.208 | 491 | 78 | 4 | 3 | 468 | 2 | 488 | 0.0 | 782 |
MS.gene04360.t1 | AT1G55810 | 78.208 | 491 | 78 | 4 | 3 | 468 | 2 | 488 | 0.0 | 782 |
MS.gene04360.t1 | AT1G55810 | 80.810 | 469 | 78 | 4 | 3 | 468 | 2 | 461 | 0.0 | 778 |
MS.gene04360.t1 | AT1G55810 | 81.659 | 458 | 72 | 4 | 14 | 468 | 3 | 451 | 0.0 | 769 |
MS.gene04360.t1 | AT3G27190 | 74.120 | 483 | 109 | 4 | 1 | 467 | 1 | 483 | 0.0 | 729 |
MS.gene04360.t1 | AT5G40870 | 73.045 | 486 | 115 | 3 | 1 | 470 | 1 | 486 | 0.0 | 724 |
MS.gene04360.t1 | AT3G27440 | 74.246 | 431 | 110 | 1 | 38 | 467 | 19 | 449 | 0.0 | 678 |
MS.gene04360.t1 | AT3G27440 | 74.876 | 402 | 100 | 1 | 67 | 467 | 1 | 402 | 0.0 | 641 |
MS.gene04360.t1 | AT3G27440 | 74.611 | 386 | 97 | 1 | 38 | 422 | 19 | 404 | 0.0 | 602 |
MS.gene04360.t1 | AT1G26190 | 30.168 | 179 | 114 | 4 | 50 | 226 | 67 | 236 | 9.80e-17 | 83.6 |
MS.gene04360.t1 | AT1G26190 | 30.726 | 179 | 113 | 4 | 50 | 226 | 67 | 236 | 1.01e-16 | 82.8 |
MS.gene04360.t1 | AT1G26190 | 30.168 | 179 | 114 | 4 | 50 | 226 | 67 | 236 | 1.14e-16 | 83.2 |
MS.gene04360.t1 | AT1G26190 | 30.168 | 179 | 114 | 4 | 50 | 226 | 67 | 236 | 1.28e-16 | 82.8 |
MS.gene04360.t1 | AT1G26190 | 30.168 | 179 | 114 | 4 | 50 | 226 | 67 | 236 | 1.57e-16 | 82.4 |
MS.gene04360.t1 | AT1G73980 | 31.844 | 179 | 111 | 5 | 50 | 226 | 67 | 236 | 7.09e-15 | 77.8 |
MS.gene04360.t1 | AT1G73980 | 31.844 | 179 | 111 | 5 | 50 | 226 | 67 | 236 | 7.09e-15 | 77.8 |
MS.gene04360.t1 | AT1G73980 | 31.844 | 179 | 111 | 5 | 50 | 226 | 67 | 236 | 7.09e-15 | 77.8 |
MS.gene04360.t1 | AT3G53900 | 26.108 | 203 | 146 | 4 | 268 | 466 | 24 | 226 | 9.11e-14 | 71.2 |
MS.gene04360.t1 | AT1G26190 | 32.836 | 134 | 87 | 2 | 95 | 226 | 8 | 140 | 1.37e-13 | 73.6 |
MS.gene04360.t1 | AT3G53900 | 26.108 | 203 | 146 | 4 | 268 | 466 | 89 | 291 | 3.30e-13 | 70.5 |
MS.gene04360.t1 | AT1G32060 | 29.944 | 177 | 120 | 3 | 50 | 226 | 70 | 242 | 4.94e-13 | 71.2 |
Find 86 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCCTTCAGATGTTATAATTT+TGG | 0.148585 | 3.4:+56726319 | MS.gene04360:CDS |
TAAGTCAGCTGTTGATTTAA+TGG | 0.276355 | 3.4:+56724057 | MS.gene04360:CDS |
GAATGAATGACATATAAATT+TGG | 0.284658 | 3.4:-56727343 | None:intergenic |
CATACCACATGTACACCTTT+AGG | 0.293979 | 3.4:-56732044 | None:intergenic |
GCGAGTTGTGCTTGTTAATC+AGG | 0.300317 | 3.4:+56725233 | MS.gene04360:CDS |
TGAGGAATTGCTTCGTGTTA+TGG | 0.306352 | 3.4:+56726019 | MS.gene04360:CDS |
ACCTTTACAGCATGCTCTTA+AGG | 0.337060 | 3.4:-56731504 | None:intergenic |
TAATTTCAGTGGGGAGAGTA+TGG | 0.342371 | 3.4:+56731475 | MS.gene04360:intron |
GTTGCTGGTGGTGCAGCATC+TGG | 0.360439 | 3.4:+56725165 | MS.gene04360:CDS |
AAGTCAGCTGTTGATTTAAT+GGG | 0.361494 | 3.4:+56724058 | MS.gene04360:CDS |
TTTCCACGATCCTCGTGTTC+GGG | 0.372455 | 3.4:+56726355 | MS.gene04360:CDS |
TCTCCGAACTCGCCCATTCC+CGG | 0.380699 | 3.4:-56732140 | None:intergenic |
TGCTGTAAAGGTATTAAGAT+TGG | 0.386732 | 3.4:+56731515 | MS.gene04360:CDS |
TGCCTTTCTGAGATATCGTT+TGG | 0.387639 | 3.4:-56731683 | None:intergenic |
CAGGTTGTAGAACATGGTTT+GGG | 0.398829 | 3.4:+56727644 | MS.gene04360:intron |
ATATCGGCATATTTCTTTGT+TGG | 0.406744 | 3.4:-56727223 | None:intergenic |
ATATCAGTTGCTGATGTTGT+TGG | 0.410405 | 3.4:-56724154 | None:intergenic |
TCAGGTTGTAGAACATGGTT+TGG | 0.415714 | 3.4:+56727643 | MS.gene04360:intron |
TCCACGAGGTATGATGATAT+CGG | 0.428819 | 3.4:-56727239 | None:intergenic |
TAACTCTTGAAGTCATACTT+TGG | 0.432602 | 3.4:-56726074 | None:intergenic |
GTGACATCTGAGATAGAGAT+TGG | 0.433285 | 3.4:+56732092 | MS.gene04360:CDS |
TTCTGATCGTTTGATTCGAT+TGG | 0.434269 | 3.4:+56727543 | MS.gene04360:CDS |
ATACCGGGAATGGGCGAGTT+CGG | 0.435058 | 3.4:+56732137 | MS.gene04360:CDS |
TCCAAAATTATAACATCTGA+AGG | 0.442172 | 3.4:-56726320 | None:intergenic |
TACAACCAACCTTTCGTCAT+AGG | 0.445494 | 3.4:+56724178 | MS.gene04360:CDS |
GATTTCTTTACTTATACAAA+AGG | 0.447550 | 3.4:+56731842 | MS.gene04360:CDS |
TTCGTTTGGCAAGAAGGATC+AGG | 0.449737 | 3.4:+56726789 | MS.gene04360:CDS |
TATCGTGTCATACCGGGAAT+GGG | 0.459400 | 3.4:+56732128 | MS.gene04360:CDS |
GCTGTAAAGGTATTAAGATT+GGG | 0.459445 | 3.4:+56731516 | MS.gene04360:CDS |
AGAAGGTGACAATGGTCAAC+AGG | 0.460710 | 3.4:+56731556 | MS.gene04360:CDS |
TGCAGATGCTGATGTTCGTT+TGG | 0.464075 | 3.4:+56726775 | MS.gene04360:intron |
TTACTGTTGGACCCTATCCT+TGG | 0.467327 | 3.4:+56731710 | MS.gene04360:CDS |
TGAAGATTATCGTGTCATAC+CGG | 0.473745 | 3.4:+56732121 | MS.gene04360:CDS |
CACGAGGATCGTGGAAAACA+AGG | 0.475686 | 3.4:-56726349 | None:intergenic |
TTATCGTGTCATACCGGGAA+TGG | 0.479665 | 3.4:+56732127 | MS.gene04360:CDS |
CTGATGTTCGTTTGGCAAGA+AGG | 0.491742 | 3.4:+56726783 | MS.gene04360:CDS |
CTTGATCAGGTTGTAGAACA+TGG | 0.496475 | 3.4:+56727638 | MS.gene04360:intron |
CATGAACCTGTGCCAAGGAT+AGG | 0.496913 | 3.4:-56731722 | None:intergenic |
AGCGAGAAGGATCGGGACAT+TGG | 0.503321 | 3.4:+56726821 | MS.gene04360:CDS |
GCCTTAAGAGCATGCTGTAA+AGG | 0.510977 | 3.4:+56731503 | MS.gene04360:CDS |
CAGCACATCCGCACAAAGCT+TGG | 0.511983 | 3.4:+56727295 | MS.gene04360:CDS |
GATTACAACTTTGATCATCC+TGG | 0.515812 | 3.4:+56725616 | MS.gene04360:CDS |
TGATACCAGCGAGAAGGATC+GGG | 0.516168 | 3.4:+56726814 | MS.gene04360:CDS |
GAGATTAAGAAATATGATGT+TGG | 0.522890 | 3.4:-56731877 | None:intergenic |
GAGTTCGGAGATCGGTACTT+TGG | 0.525316 | 3.4:+56732152 | MS.gene04360:CDS |
ATGAACCTGTGCCAAGGATA+GGG | 0.525822 | 3.4:-56731721 | None:intergenic |
GTGATACCAGCGAGAAGGAT+CGG | 0.526363 | 3.4:+56726813 | MS.gene04360:CDS |
ATTTCTTTACTTATACAAAA+GGG | 0.541370 | 3.4:+56731843 | MS.gene04360:CDS |
ACAAAAGTGATGCGTTGAGA+AGG | 0.546273 | 3.4:+56726096 | MS.gene04360:CDS |
GTAGTGGTTGCTTCACAGTA+AGG | 0.547142 | 3.4:+56732194 | MS.gene04360:CDS |
AGAAATATGATGTTGGACTC+TGG | 0.555877 | 3.4:-56731870 | None:intergenic |
TTGGACCCTATCCTTGGCAC+AGG | 0.556021 | 3.4:+56731716 | MS.gene04360:CDS |
GAATGGGCGAGTTCGGAGAT+CGG | 0.557304 | 3.4:+56732144 | MS.gene04360:CDS |
AGAATGAAGTCATCAAAAGC+TGG | 0.564855 | 3.4:-56727199 | None:intergenic |
TTACAATAACTTGACTGAGG+AGG | 0.569168 | 3.4:+56725576 | MS.gene04360:CDS |
CAAAAGTGATGCGTTGAGAA+GGG | 0.578865 | 3.4:+56726097 | MS.gene04360:CDS |
AGAAAGGCACGTGTTACTGT+TGG | 0.578877 | 3.4:+56731697 | MS.gene04360:CDS |
GACCATTGTCACCTTCTCTG+TGG | 0.583645 | 3.4:-56731550 | None:intergenic |
GATTAACAAGCACAACTCGC+TGG | 0.584484 | 3.4:-56725230 | None:intergenic |
ATGAAGATATTTGTTGACAC+AGG | 0.586048 | 3.4:+56726389 | MS.gene04360:CDS |
AGGTTCTGTATACACGGGTG+TGG | 0.593614 | 3.4:+56727844 | MS.gene04360:intron |
GAAGATTATCGTGTCATACC+GGG | 0.599530 | 3.4:+56732122 | MS.gene04360:CDS |
AATGTCCCGATCCTTCTCGC+TGG | 0.600283 | 3.4:-56726819 | None:intergenic |
AAGCAAGTGATCACTCCCAC+TGG | 0.600893 | 3.4:+56727686 | MS.gene04360:CDS |
ACACACCTATGACGAAAGGT+TGG | 0.603399 | 3.4:-56724183 | None:intergenic |
CCAAAATTATAACATCTGAA+GGG | 0.611028 | 3.4:-56726319 | None:intergenic |
ACTGTCATGAACCTGTGCCA+AGG | 0.615431 | 3.4:-56731727 | None:intergenic |
ACTCCCGAACACGAGGATCG+TGG | 0.615840 | 3.4:-56726358 | None:intergenic |
TGCCAAACGATATCTCAGAA+AGG | 0.623532 | 3.4:+56731681 | MS.gene04360:CDS |
GAAAACACACCTATGACGAA+AGG | 0.624653 | 3.4:-56724187 | None:intergenic |
AATGGCAGGTTCTGTATACA+CGG | 0.626497 | 3.4:+56727838 | MS.gene04360:intron |
CAGGCGTGATACCAGCGAGA+AGG | 0.627099 | 3.4:+56726808 | MS.gene04360:CDS |
GTTATGGACAAGTTGAAGCA+TGG | 0.627582 | 3.4:+56726035 | MS.gene04360:CDS |
GGCTCCTAAAGGTGTACATG+TGG | 0.628140 | 3.4:+56732040 | MS.gene04360:intron |
CATGTTGACCAAGCTTTGTG+CGG | 0.634982 | 3.4:-56727303 | None:intergenic |
ATCCACAGAGAAGGTGACAA+TGG | 0.641587 | 3.4:+56731548 | MS.gene04360:CDS |
GCCGATATCATCATACCTCG+TGG | 0.642641 | 3.4:+56727238 | MS.gene04360:CDS |
GTGGTGTCTCTGTCATCAGA+AGG | 0.646781 | 3.4:+56727885 | MS.gene04360:CDS |
TTCATCAACTCCCGAACACG+AGG | 0.650470 | 3.4:-56726365 | None:intergenic |
AGATGATGATGAACAAGTAG+TGG | 0.657572 | 3.4:+56732178 | MS.gene04360:CDS |
ATGGCAGGTTCTGTATACAC+GGG | 0.676045 | 3.4:+56727839 | MS.gene04360:intron |
AGGTTGTAGAACATGGTTTG+GGG | 0.676716 | 3.4:+56727645 | MS.gene04360:intron |
GATATCATCATACCTCGTGG+AGG | 0.736631 | 3.4:+56727241 | MS.gene04360:CDS |
TCGTGGAGGAGATAATCATG+TGG | 0.738810 | 3.4:+56727255 | MS.gene04360:CDS |
ATTGCTGCTATGCAGATACG+GGG | 0.767252 | 3.4:+56727466 | MS.gene04360:intron |
ACATGATTATCTCCTCCACG+AGG | 0.810543 | 3.4:-56727253 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.4 | gene | 56724046 | 56732214 | 56724046 | ID=MS.gene04360 |
chr3.4 | mRNA | 56724046 | 56732214 | 56724046 | ID=MS.gene04360.t1;Parent=MS.gene04360 |
chr3.4 | exon | 56724046 | 56724199 | 56724046 | ID=MS.gene04360.t1.exon1;Parent=MS.gene04360.t1 |
chr3.4 | CDS | 56724046 | 56724199 | 56724046 | ID=cds.MS.gene04360.t1;Parent=MS.gene04360.t1 |
chr3.4 | exon | 56725163 | 56725254 | 56725163 | ID=MS.gene04360.t1.exon2;Parent=MS.gene04360.t1 |
chr3.4 | CDS | 56725163 | 56725254 | 56725163 | ID=cds.MS.gene04360.t1;Parent=MS.gene04360.t1 |
chr3.4 | exon | 56725568 | 56725637 | 56725568 | ID=MS.gene04360.t1.exon3;Parent=MS.gene04360.t1 |
chr3.4 | CDS | 56725568 | 56725637 | 56725568 | ID=cds.MS.gene04360.t1;Parent=MS.gene04360.t1 |
chr3.4 | exon | 56726006 | 56726118 | 56726006 | ID=MS.gene04360.t1.exon4;Parent=MS.gene04360.t1 |
chr3.4 | CDS | 56726006 | 56726118 | 56726006 | ID=cds.MS.gene04360.t1;Parent=MS.gene04360.t1 |
chr3.4 | exon | 56726314 | 56726410 | 56726314 | ID=MS.gene04360.t1.exon5;Parent=MS.gene04360.t1 |
chr3.4 | CDS | 56726314 | 56726410 | 56726314 | ID=cds.MS.gene04360.t1;Parent=MS.gene04360.t1 |
chr3.4 | exon | 56726780 | 56726859 | 56726780 | ID=MS.gene04360.t1.exon6;Parent=MS.gene04360.t1 |
chr3.4 | CDS | 56726780 | 56726859 | 56726780 | ID=cds.MS.gene04360.t1;Parent=MS.gene04360.t1 |
chr3.4 | exon | 56727181 | 56727375 | 56727181 | ID=MS.gene04360.t1.exon7;Parent=MS.gene04360.t1 |
chr3.4 | CDS | 56727181 | 56727375 | 56727181 | ID=cds.MS.gene04360.t1;Parent=MS.gene04360.t1 |
chr3.4 | exon | 56727481 | 56727564 | 56727481 | ID=MS.gene04360.t1.exon8;Parent=MS.gene04360.t1 |
chr3.4 | CDS | 56727481 | 56727564 | 56727481 | ID=cds.MS.gene04360.t1;Parent=MS.gene04360.t1 |
chr3.4 | exon | 56727647 | 56727707 | 56727647 | ID=MS.gene04360.t1.exon9;Parent=MS.gene04360.t1 |
chr3.4 | CDS | 56727647 | 56727707 | 56727647 | ID=cds.MS.gene04360.t1;Parent=MS.gene04360.t1 |
chr3.4 | exon | 56727846 | 56727906 | 56727846 | ID=MS.gene04360.t1.exon10;Parent=MS.gene04360.t1 |
chr3.4 | CDS | 56727846 | 56727906 | 56727846 | ID=cds.MS.gene04360.t1;Parent=MS.gene04360.t1 |
chr3.4 | exon | 56731484 | 56731577 | 56731484 | ID=MS.gene04360.t1.exon11;Parent=MS.gene04360.t1 |
chr3.4 | CDS | 56731484 | 56731577 | 56731484 | ID=cds.MS.gene04360.t1;Parent=MS.gene04360.t1 |
chr3.4 | exon | 56731665 | 56731737 | 56731665 | ID=MS.gene04360.t1.exon12;Parent=MS.gene04360.t1 |
chr3.4 | CDS | 56731665 | 56731737 | 56731665 | ID=cds.MS.gene04360.t1;Parent=MS.gene04360.t1 |
chr3.4 | exon | 56731823 | 56731905 | 56731823 | ID=MS.gene04360.t1.exon13;Parent=MS.gene04360.t1 |
chr3.4 | CDS | 56731823 | 56731905 | 56731823 | ID=cds.MS.gene04360.t1;Parent=MS.gene04360.t1 |
chr3.4 | exon | 56732041 | 56732214 | 56732041 | ID=MS.gene04360.t1.exon14;Parent=MS.gene04360.t1 |
chr3.4 | CDS | 56732041 | 56732214 | 56732041 | ID=cds.MS.gene04360.t1;Parent=MS.gene04360.t1 |
Gene Sequence |
Protein sequence |