Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene79193.t1 | XP_013448035.1 | 92.6 | 474 | 2 | 1 | 1 | 441 | 1 | 474 | 1.30E-250 | 875.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene79193.t1 | Q9FKS0 | 83.0 | 483 | 40 | 1 | 1 | 441 | 1 | 483 | 8.9e-232 | 803.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene79193.t1 | A0A072TXA0 | 92.6 | 474 | 2 | 1 | 1 | 441 | 1 | 474 | 9.5e-251 | 875.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene79193.t1 | MTR_7g029450 | 92.616 | 474 | 2 | 1 | 1 | 441 | 1 | 474 | 0.0 | 884 |
MS.gene79193.t1 | MTR_4g103620 | 80.899 | 445 | 67 | 2 | 14 | 441 | 10 | 453 | 0.0 | 733 |
MS.gene79193.t1 | MTR_3g061030 | 81.295 | 417 | 76 | 1 | 25 | 441 | 53 | 467 | 0.0 | 710 |
MS.gene79193.t1 | MTR_5g096660 | 71.734 | 467 | 102 | 1 | 5 | 441 | 3 | 469 | 0.0 | 687 |
MS.gene79193.t1 | MTR_3g061030 | 81.390 | 403 | 73 | 1 | 39 | 441 | 1 | 401 | 0.0 | 683 |
MS.gene79193.t1 | MTR_6g021580 | 55.752 | 113 | 47 | 2 | 6 | 118 | 25 | 134 | 4.32e-32 | 123 |
MS.gene79193.t1 | MTR_4g020090 | 29.885 | 174 | 119 | 3 | 269 | 439 | 108 | 281 | 2.09e-17 | 82.4 |
MS.gene79193.t1 | MTR_8g069865 | 24.432 | 176 | 124 | 3 | 25 | 200 | 70 | 236 | 3.75e-13 | 72.0 |
MS.gene79193.t1 | MTR_5g027530 | 28.302 | 159 | 111 | 2 | 77 | 235 | 137 | 292 | 5.76e-13 | 70.5 |
MS.gene79193.t1 | MTR_4g112790 | 25.000 | 176 | 123 | 3 | 25 | 200 | 75 | 241 | 8.69e-13 | 70.9 |
MS.gene79193.t1 | MTR_4g073890 | 24.432 | 176 | 124 | 3 | 25 | 200 | 94 | 260 | 8.83e-13 | 70.5 |
MS.gene79193.t1 | MTR_4g112790 | 25.000 | 176 | 123 | 3 | 25 | 200 | 75 | 241 | 9.57e-13 | 70.5 |
MS.gene79193.t1 | MTR_4g073890 | 24.432 | 176 | 124 | 3 | 25 | 200 | 94 | 260 | 1.22e-12 | 70.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene79193.t1 | AT5G40870 | 83.023 | 483 | 40 | 1 | 1 | 441 | 1 | 483 | 0.0 | 810 |
MS.gene79193.t1 | AT3G27190 | 80.952 | 483 | 50 | 1 | 1 | 441 | 1 | 483 | 0.0 | 793 |
MS.gene79193.t1 | AT1G55810 | 81.055 | 417 | 79 | 0 | 25 | 441 | 49 | 465 | 0.0 | 710 |
MS.gene79193.t1 | AT1G55810 | 81.055 | 417 | 79 | 0 | 25 | 441 | 49 | 465 | 0.0 | 710 |
MS.gene79193.t1 | AT1G55810 | 81.055 | 417 | 79 | 0 | 25 | 441 | 49 | 465 | 0.0 | 710 |
MS.gene79193.t1 | AT4G26510 | 74.359 | 468 | 87 | 2 | 5 | 441 | 3 | 468 | 0.0 | 705 |
MS.gene79193.t1 | AT4G26510 | 74.359 | 468 | 87 | 2 | 5 | 441 | 3 | 468 | 0.0 | 705 |
MS.gene79193.t1 | AT4G26510 | 74.359 | 468 | 87 | 2 | 5 | 441 | 3 | 468 | 0.0 | 705 |
MS.gene79193.t1 | AT4G26510 | 74.359 | 468 | 87 | 2 | 5 | 441 | 3 | 468 | 0.0 | 705 |
MS.gene79193.t1 | AT1G55810 | 76.993 | 439 | 79 | 1 | 25 | 441 | 49 | 487 | 0.0 | 697 |
MS.gene79193.t1 | AT1G55810 | 76.993 | 439 | 79 | 1 | 25 | 441 | 49 | 487 | 0.0 | 697 |
MS.gene79193.t1 | AT1G55810 | 79.856 | 417 | 79 | 1 | 25 | 441 | 49 | 460 | 0.0 | 693 |
MS.gene79193.t1 | AT1G55810 | 79.856 | 417 | 79 | 1 | 25 | 441 | 39 | 450 | 0.0 | 692 |
MS.gene79193.t1 | AT3G27440 | 77.218 | 417 | 94 | 1 | 25 | 441 | 34 | 449 | 0.0 | 672 |
MS.gene79193.t1 | AT3G27440 | 76.923 | 403 | 92 | 1 | 39 | 441 | 1 | 402 | 0.0 | 646 |
MS.gene79193.t1 | AT3G27440 | 77.568 | 370 | 82 | 1 | 25 | 394 | 34 | 402 | 0.0 | 592 |
MS.gene79193.t1 | AT3G53900 | 30.286 | 175 | 119 | 3 | 269 | 440 | 52 | 226 | 4.02e-17 | 80.9 |
MS.gene79193.t1 | AT3G53900 | 30.286 | 175 | 119 | 3 | 269 | 440 | 117 | 291 | 1.32e-16 | 80.5 |
MS.gene79193.t1 | AT1G73980 | 27.273 | 176 | 119 | 3 | 25 | 200 | 70 | 236 | 1.46e-14 | 76.3 |
MS.gene79193.t1 | AT1G73980 | 27.273 | 176 | 119 | 3 | 25 | 200 | 70 | 236 | 1.46e-14 | 76.3 |
MS.gene79193.t1 | AT1G73980 | 27.273 | 176 | 119 | 3 | 25 | 200 | 70 | 236 | 1.46e-14 | 76.3 |
MS.gene79193.t1 | AT1G26190 | 24.204 | 314 | 190 | 12 | 25 | 302 | 70 | 371 | 2.78e-13 | 72.0 |
MS.gene79193.t1 | AT1G26190 | 24.204 | 314 | 190 | 12 | 25 | 302 | 70 | 371 | 3.88e-13 | 71.6 |
MS.gene79193.t1 | AT1G32060 | 29.375 | 160 | 110 | 2 | 77 | 236 | 122 | 278 | 4.00e-13 | 71.2 |
MS.gene79193.t1 | AT1G26190 | 24.204 | 314 | 190 | 12 | 25 | 302 | 70 | 371 | 4.33e-13 | 71.6 |
MS.gene79193.t1 | AT1G26190 | 24.204 | 314 | 190 | 12 | 25 | 302 | 70 | 371 | 5.65e-13 | 71.2 |
MS.gene79193.t1 | AT1G26190 | 24.204 | 314 | 190 | 12 | 25 | 302 | 70 | 371 | 6.90e-13 | 70.9 |
MS.gene79193.t1 | AT1G26190 | 25.188 | 266 | 159 | 10 | 73 | 302 | 14 | 275 | 2.72e-11 | 65.9 |
Find 88 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGTTGTAAAGGCATTAAAAT+TGG | 0.197653 | 7.2:-68588595 | MS.gene79193:CDS |
ATCCCTGGGTTGGGTGAATT+TGG | 0.239695 | 7.2:-68586975 | MS.gene79193:CDS |
GTGCTTCTTGAAGTCGTAAA+TGG | 0.239913 | 7.2:+68592942 | None:intergenic |
GAATCCATTGTGTGTGTAAA+AGG | 0.255011 | 7.2:-68587061 | MS.gene79193:CDS |
GGTGATGGTGCAGGTGTTTC+CGG | 0.265259 | 7.2:-68594255 | MS.gene79193:intron |
GTTTCCGGTGGAACTGCTTC+TGG | 0.279617 | 7.2:-68594240 | MS.gene79193:CDS |
ACATCAGCATATTTCTTTGA+TGG | 0.295024 | 7.2:+68590294 | None:intergenic |
TACTCACAGAAATGAGATTC+AGG | 0.317310 | 7.2:+68587180 | None:intergenic |
TTCGCCATGGAAGCAGCATC+TGG | 0.320964 | 7.2:-68594462 | MS.gene79193:CDS |
TGCCTCTGATGTCATTATAT+TGG | 0.323005 | 7.2:-68591427 | MS.gene79193:CDS |
ATTGAATTACTCATTCAAAA+AGG | 0.331373 | 7.2:-68587227 | MS.gene79193:CDS |
TGAACATGTTCCAACTCTTC+CGG | 0.353237 | 7.2:+68593792 | None:intergenic |
ATTCACCGGGATGGAGATAA+TGG | 0.355599 | 7.2:-68588562 | MS.gene79193:CDS |
TGTTATTCAATCTACATTCC+AGG | 0.375352 | 7.2:-68590163 | MS.gene79193:intron |
CTTGACCCTGTGCTTGCTAC+AGG | 0.378127 | 7.2:-68588375 | MS.gene79193:intron |
GATTGAATAACATAAACATT+TGG | 0.402656 | 7.2:+68590174 | None:intergenic |
CATAAACTCTGTTCTTGAAA+TGG | 0.406856 | 7.2:-68590553 | MS.gene79193:intron |
TCGTGTTGTCCTTGTCAATC+AGG | 0.412715 | 7.2:-68594172 | MS.gene79193:intron |
AAGCAAGTTGTCACTCCAAC+AGG | 0.428007 | 7.2:-68589142 | MS.gene79193:intron |
ATTACAGGATCTGTCTATAC+TGG | 0.440355 | 7.2:-68588936 | MS.gene79193:intron |
GGATGGAGATAATGGAAAAC+AGG | 0.462347 | 7.2:-68588554 | MS.gene79193:intron |
TTTCGTGTTATCCCTGGGTT+GGG | 0.467068 | 7.2:-68586984 | MS.gene79193:CDS |
TGCTTCTTGAAGTCGTAAAT+GGG | 0.476606 | 7.2:+68592943 | None:intergenic |
GGGCCCAGATGCTGCTTCCA+TGG | 0.482041 | 7.2:+68594458 | None:intergenic |
AGGAATATAATGTGCGATTC+CGG | 0.482077 | 7.2:+68587200 | None:intergenic |
GCATCTGGGCCCCACTTCTC+CGG | 0.484486 | 7.2:-68594447 | MS.gene79193:CDS |
GATGAGTTTCGTGTTATCCC+TGG | 0.484651 | 7.2:-68586990 | MS.gene79193:CDS |
GAATTTGGTGATCGGTACTT+TGG | 0.484890 | 7.2:-68586960 | MS.gene79193:CDS |
TAGACGTGACACAGTGGAAA+GGG | 0.487962 | 7.2:-68590583 | MS.gene79193:CDS |
GAGTAATTCAATTGCTTGGT+TGG | 0.488235 | 7.2:+68587238 | None:intergenic |
GCACTTCGTGCATGTTGTAA+AGG | 0.490105 | 7.2:-68588607 | MS.gene79193:CDS |
CGGCAACAGGTTGTTGAGCA+TGG | 0.490316 | 7.2:-68589190 | MS.gene79193:intron |
CTCTGATGTCATTATATTGG+AGG | 0.494319 | 7.2:-68591424 | MS.gene79193:CDS |
CAGGTTGTTGAGCATGGTCT+CGG | 0.496423 | 7.2:-68589184 | MS.gene79193:CDS |
ATGCCGTTCCGAGATATCCT+TGG | 0.496850 | 7.2:+68588407 | None:intergenic |
TGCCGTTCCGAGATATCCTT+GGG | 0.499754 | 7.2:+68588408 | None:intergenic |
GCCGCCGTCGAGACGGAGGC+CGG | 0.502355 | 7.2:+68594428 | None:intergenic |
GTTTCGTGTTATCCCTGGGT+TGG | 0.503902 | 7.2:-68586985 | MS.gene79193:CDS |
TCGATCGAACTTGTTTCGTC+CGG | 0.505866 | 7.2:+68594486 | None:intergenic |
TCTTCACCTGTAGCAAGCAC+AGG | 0.508132 | 7.2:+68588369 | None:intergenic |
ATATTATAGTGGTGAGAGCA+TGG | 0.510645 | 7.2:-68588635 | MS.gene79193:intron |
CGGGTTGAAACCGGAAGAGT+TGG | 0.521978 | 7.2:-68593802 | MS.gene79193:CDS |
GGTTGGGTGAATTTGGTGAT+CGG | 0.527041 | 7.2:-68586968 | MS.gene79193:CDS |
GAGACGGAGGCCGGAGAAGT+GGG | 0.529653 | 7.2:+68594437 | None:intergenic |
GATTTCTGCAAGAAATTATG+TGG | 0.532266 | 7.2:-68588909 | MS.gene79193:CDS |
GATCACGTACATCTTGATCA+TGG | 0.534256 | 7.2:+68591388 | None:intergenic |
CAACACATCCGCACCAAGCT+TGG | 0.537928 | 7.2:-68590222 | MS.gene79193:CDS |
CGAGACGGAGGCCGGAGAAG+TGG | 0.540275 | 7.2:+68594436 | None:intergenic |
GAATGAGTAATTCAATTGCT+TGG | 0.540531 | 7.2:+68587234 | None:intergenic |
AAAACAAAGTCATCAAAAGC+AGG | 0.546686 | 7.2:+68590318 | None:intergenic |
TCGCCATGGAAGCAGCATCT+GGG | 0.550210 | 7.2:-68594461 | MS.gene79193:CDS |
ATGTTTATATTTCAGATAAG+GGG | 0.553285 | 7.2:-68589371 | MS.gene79193:intron |
CACACACAATGGATTCCCTC+AGG | 0.556313 | 7.2:+68587068 | None:intergenic |
TTCCGATCGACTTATTCGCC+TGG | 0.557917 | 7.2:-68589294 | MS.gene79193:intron |
GTGGTGTTTCAATTATTCGA+AGG | 0.565872 | 7.2:-68588890 | MS.gene79193:intron |
TAGATCATGTTGACCAAGCT+TGG | 0.566984 | 7.2:+68590209 | None:intergenic |
ATGAAGATCTTTGTTGACAC+AGG | 0.568966 | 7.2:-68591357 | MS.gene79193:intron |
ATGAGTTTCGTGTTATCCCT+GGG | 0.572329 | 7.2:-68586989 | MS.gene79193:CDS |
TTATGTTTCCAGGCTCCTGA+GGG | 0.584546 | 7.2:-68587083 | MS.gene79193:intron |
GAAGCTTCCCAAGGATATCT+CGG | 0.586278 | 7.2:-68588415 | MS.gene79193:CDS |
TCACCAAATTCACCCAACCC+AGG | 0.591016 | 7.2:+68586972 | None:intergenic |
GAAAACTATCAGAACTGCGT+TGG | 0.591550 | 7.2:+68592920 | None:intergenic |
AAAATTCTGATTCACCGGGA+TGG | 0.592498 | 7.2:-68588571 | MS.gene79193:CDS |
AAGTTCGATCGACTTCGCCA+TGG | 0.597589 | 7.2:-68594475 | MS.gene79193:CDS |
TGTTTATATTTCAGATAAGG+GGG | 0.598011 | 7.2:-68589370 | MS.gene79193:intron |
TCTGATGTCATTATATTGGA+GGG | 0.600404 | 7.2:-68591423 | MS.gene79193:CDS |
CTCCAATATAATGACATCAG+AGG | 0.606825 | 7.2:+68591425 | None:intergenic |
TGTTGTAGATGCTTTCGACA+CGG | 0.614727 | 7.2:-68593019 | MS.gene79193:intron |
CACCAAATTCACCCAACCCA+GGG | 0.617414 | 7.2:+68586973 | None:intergenic |
CTTCACCTGTAGCAAGCACA+GGG | 0.617737 | 7.2:+68588370 | None:intergenic |
CATGTTGAAGGATCAATCAT+CGG | 0.618402 | 7.2:+68586935 | None:intergenic |
TTAGACGTGACACAGTGGAA+AGG | 0.619684 | 7.2:-68590584 | MS.gene79193:CDS |
AGACGGAGGCCGGAGAAGTG+GGG | 0.624092 | 7.2:+68594438 | None:intergenic |
GTGTTGCGTAATCAAATCGA+TGG | 0.627266 | 7.2:+68590239 | None:intergenic |
TACCAGGCGAATAAGTCGAT+CGG | 0.628215 | 7.2:+68589292 | None:intergenic |
TTTATGTTTCCAGGCTCCTG+AGG | 0.632851 | 7.2:-68587084 | MS.gene79193:intron |
AGACGTGACACAGTGGAAAG+GGG | 0.654286 | 7.2:-68590582 | MS.gene79193:CDS |
GATGGTGCAGGTGTTTCCGG+TGG | 0.667654 | 7.2:-68594252 | MS.gene79193:intron |
TTCCCAAGGATATCTCGGAA+CGG | 0.669362 | 7.2:-68588410 | MS.gene79193:CDS |
TATATATGAGAAGCTTCCCA+AGG | 0.669802 | 7.2:-68588424 | MS.gene79193:CDS |
TGTATGAAGAAGCTCATCAG+TGG | 0.670248 | 7.2:-68592982 | MS.gene79193:CDS |
CATGTTGACCAAGCTTGGTG+CGG | 0.693702 | 7.2:+68590214 | None:intergenic |
TGCATACAGATGCTGATGTG+AGG | 0.696375 | 7.2:-68590620 | MS.gene79193:intron |
TAGAATTAGACGTGACACAG+TGG | 0.697175 | 7.2:-68590589 | MS.gene79193:CDS |
TGTAATGTACCTGATTGACA+AGG | 0.725876 | 7.2:+68594163 | None:intergenic |
GCTGATGTGATCATTCCTCG+TGG | 0.746285 | 7.2:-68590279 | MS.gene79193:CDS |
GATGTGATCATTCCTCGTGG+AGG | 0.762955 | 7.2:-68590276 | MS.gene79193:CDS |
ACATGATTATCACCTCCACG+AGG | 0.804217 | 7.2:+68590264 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.2 | gene | 68586947 | 68594511 | 68586947 | ID=MS.gene79193 |
chr7.2 | mRNA | 68586947 | 68594511 | 68586947 | ID=MS.gene79193.t1;Parent=MS.gene79193 |
chr7.2 | exon | 68594442 | 68594511 | 68594442 | ID=MS.gene79193.t1.exon1;Parent=MS.gene79193.t1 |
chr7.2 | CDS | 68594442 | 68594511 | 68594442 | ID=cds.MS.gene79193.t1;Parent=MS.gene79193.t1 |
chr7.2 | exon | 68594173 | 68594264 | 68594173 | ID=MS.gene79193.t1.exon2;Parent=MS.gene79193.t1 |
chr7.2 | CDS | 68594173 | 68594264 | 68594173 | ID=cds.MS.gene79193.t1;Parent=MS.gene79193.t1 |
chr7.2 | exon | 68593769 | 68593838 | 68593769 | ID=MS.gene79193.t1.exon3;Parent=MS.gene79193.t1 |
chr7.2 | CDS | 68593769 | 68593838 | 68593769 | ID=cds.MS.gene79193.t1;Parent=MS.gene79193.t1 |
chr7.2 | exon | 68592915 | 68593033 | 68592915 | ID=MS.gene79193.t1.exon4;Parent=MS.gene79193.t1 |
chr7.2 | CDS | 68592915 | 68593033 | 68592915 | ID=cds.MS.gene79193.t1;Parent=MS.gene79193.t1 |
chr7.2 | exon | 68591358 | 68591454 | 68591358 | ID=MS.gene79193.t1.exon5;Parent=MS.gene79193.t1 |
chr7.2 | CDS | 68591358 | 68591454 | 68591358 | ID=cds.MS.gene79193.t1;Parent=MS.gene79193.t1 |
chr7.2 | exon | 68590554 | 68590633 | 68590554 | ID=MS.gene79193.t1.exon6;Parent=MS.gene79193.t1 |
chr7.2 | CDS | 68590554 | 68590633 | 68590554 | ID=cds.MS.gene79193.t1;Parent=MS.gene79193.t1 |
chr7.2 | exon | 68590164 | 68590358 | 68590164 | ID=MS.gene79193.t1.exon7;Parent=MS.gene79193.t1 |
chr7.2 | CDS | 68590164 | 68590358 | 68590164 | ID=cds.MS.gene79193.t1;Parent=MS.gene79193.t1 |
chr7.2 | exon | 68589295 | 68589378 | 68589295 | ID=MS.gene79193.t1.exon8;Parent=MS.gene79193.t1 |
chr7.2 | CDS | 68589295 | 68589378 | 68589295 | ID=cds.MS.gene79193.t1;Parent=MS.gene79193.t1 |
chr7.2 | exon | 68589143 | 68589203 | 68589143 | ID=MS.gene79193.t1.exon9;Parent=MS.gene79193.t1 |
chr7.2 | CDS | 68589143 | 68589203 | 68589143 | ID=cds.MS.gene79193.t1;Parent=MS.gene79193.t1 |
chr7.2 | exon | 68588891 | 68588951 | 68588891 | ID=MS.gene79193.t1.exon10;Parent=MS.gene79193.t1 |
chr7.2 | CDS | 68588891 | 68588951 | 68588891 | ID=cds.MS.gene79193.t1;Parent=MS.gene79193.t1 |
chr7.2 | exon | 68588555 | 68588648 | 68588555 | ID=MS.gene79193.t1.exon11;Parent=MS.gene79193.t1 |
chr7.2 | CDS | 68588555 | 68588648 | 68588555 | ID=cds.MS.gene79193.t1;Parent=MS.gene79193.t1 |
chr7.2 | exon | 68588376 | 68588448 | 68588376 | ID=MS.gene79193.t1.exon12;Parent=MS.gene79193.t1 |
chr7.2 | CDS | 68588376 | 68588448 | 68588376 | ID=cds.MS.gene79193.t1;Parent=MS.gene79193.t1 |
chr7.2 | exon | 68587187 | 68587269 | 68587187 | ID=MS.gene79193.t1.exon13;Parent=MS.gene79193.t1 |
chr7.2 | CDS | 68587187 | 68587269 | 68587187 | ID=cds.MS.gene79193.t1;Parent=MS.gene79193.t1 |
chr7.2 | exon | 68586947 | 68587093 | 68586947 | ID=MS.gene79193.t1.exon14;Parent=MS.gene79193.t1 |
chr7.2 | CDS | 68586947 | 68587093 | 68586947 | ID=cds.MS.gene79193.t1;Parent=MS.gene79193.t1 |
Gene Sequence |
Protein sequence |