AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene043618

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene043618.t1 MTR_8g043650 86.920 237 31 0 1 237 1 237 4.06e-156 432
MS.gene043618.t1 MTR_3g052920 92.202 218 17 0 1 218 1 218 1.42e-151 421
MS.gene043618.t1 MTR_1g105920 89.450 218 23 0 1 218 1 218 5.66e-148 412
MS.gene043618.t1 MTR_2g030740 89.030 237 26 0 1 237 1 237 1.26e-147 411
MS.gene043618.t1 MTR_1g105910 86.498 237 32 0 1 237 1 237 4.35e-147 410
MS.gene043618.t1 MTR_1g012570 86.498 237 32 0 1 237 1 237 7.35e-143 399
MS.gene043618.t1 MTR_1g105905 79.091 220 46 0 18 237 1 220 4.26e-131 369
MS.gene043618.t1 MTR_3g052870 83.562 219 17 2 1 219 1 200 2.73e-130 367
MS.gene043618.t1 MTR_1g108510 72.766 235 46 3 1 225 1 227 2.20e-118 337
MS.gene043618.t1 MTR_0121s0080 70.464 237 69 1 1 237 1 236 7.15e-118 336
MS.gene043618.t1 MTR_1g106070 86.813 182 24 0 1 182 1 182 2.86e-117 332
MS.gene043618.t1 MTR_3g030770 71.489 235 49 3 1 225 1 227 4.78e-117 333
MS.gene043618.t1 MTR_2g085280 66.525 236 79 0 1 236 1 236 2.02e-116 332
MS.gene043618.t1 MTR_2g085250 66.525 236 79 0 1 236 1 236 6.11e-116 331
MS.gene043618.t1 MTR_5g055100 65.401 237 82 0 1 237 1 237 1.01e-115 330
MS.gene043618.t1 MTR_1g077360 69.333 225 69 0 1 225 1 225 1.12e-114 328
MS.gene043618.t1 MTR_1g075600 70.222 225 67 0 1 225 1 225 2.64e-114 327
MS.gene043618.t1 MTR_2g093190 71.489 235 49 3 1 225 1 227 1.23e-113 325
MS.gene043618.t1 MTR_1g108580 69.787 235 53 3 1 225 1 227 3.24e-111 319
MS.gene043618.t1 MTR_5g045560 67.511 237 77 0 1 237 1 237 3.37e-109 314
MS.gene043618.t1 MTR_5g053390 67.556 225 73 0 1 225 1 225 3.45e-109 314
MS.gene043618.t1 MTR_7g062350 67.290 214 69 1 24 237 36 248 1.04e-100 293
MS.gene043618.t1 MTR_0121s0100 77.273 132 30 0 1 132 1 132 4.18e-70 211
MS.gene043618.t1 MTR_1g075570 64.045 178 50 1 18 195 1 164 2.28e-68 207
MS.gene043618.t1 MTR_3g030780 73.643 129 34 0 1 129 1 129 6.76e-64 195
MS.gene043618.t1 MTR_3g080940 58.442 154 64 0 7 160 7 160 1.82e-63 197
MS.gene043618.t1 MTR_3g067910 69.608 102 31 0 21 122 2 103 4.02e-46 149
MS.gene043618.t1 MTR_2g105290 39.766 171 93 2 5 172 8 171 3.37e-40 136
MS.gene043618.t1 MTR_8g086290 40.462 173 89 3 5 170 8 173 5.90e-40 135
MS.gene043618.t1 MTR_7g028448 45.161 155 73 3 5 159 8 150 1.48e-34 122
MS.gene043618.t1 MTR_4g036915 45.161 155 73 3 5 159 8 150 1.48e-34 122
MS.gene043618.t1 MTR_1g108500 59.292 113 23 2 8 118 94 185 6.00e-32 119
MS.gene043618.t1 MTR_4g127140 38.043 184 94 4 5 175 8 184 3.75e-31 113
MS.gene043618.t1 MTR_3g067875 83.929 56 9 0 18 73 1 56 1.64e-27 100
MS.gene043618.t1 MTR_3g067915 52.128 94 45 0 33 126 3 96 7.86e-25 94.4
MS.gene043618.t1 MTR_1g047550 62.319 69 26 0 9 77 2 70 2.13e-24 95.9
MS.gene043618.t1 MTR_8g079502 62.319 69 26 0 9 77 2 70 5.39e-24 94.7
MS.gene043618.t1 MTR_3g067870 69.841 63 19 0 16 78 83 145 1.81e-23 92.8
MS.gene043618.t1 MTR_8g046350 40.909 132 66 3 9 135 2 126 2.96e-23 92.4
MS.gene043618.t1 MTR_4g131030 40.517 116 54 2 9 109 2 117 3.25e-23 93.6
MS.gene043618.t1 MTR_1g063160 48.544 103 51 2 9 109 2 104 3.33e-23 92.8
MS.gene043618.t1 MTR_1g054265 46.535 101 52 1 9 109 2 100 3.74e-23 92.4
MS.gene043618.t1 MTR_8g051580 46.535 101 52 1 9 109 2 100 4.06e-23 92.8
MS.gene043618.t1 MTR_4g094632 40.708 113 64 2 9 120 2 112 1.06e-20 85.5
MS.gene043618.t1 MTR_4g093970 32.919 161 92 3 10 160 29 183 7.32e-20 85.5
MS.gene043618.t1 MTR_8g022970 34.568 162 93 3 8 163 17 171 3.03e-19 82.4
MS.gene043618.t1 MTR_4g094638 41.509 106 61 1 9 113 2 107 1.56e-18 80.5
MS.gene043618.t1 MTR_3g005530 51.471 68 33 0 9 76 2 69 2.09e-18 81.3
MS.gene043618.t1 MTR_3g452380 41.509 106 52 1 3 108 11 106 2.97e-18 81.3
MS.gene043618.t1 MTR_4g102530 47.945 73 38 0 10 82 3 75 2.09e-17 78.2
MS.gene043618.t1 MTR_1g053070 48.148 81 42 0 9 89 2 82 2.19e-17 79.0
MS.gene043618.t1 MTR_5g066180 50.000 68 34 0 9 76 2 69 8.36e-17 77.0
MS.gene043618.t1 MTR_8g033270 50.000 68 34 0 9 76 2 69 1.11e-16 77.0
MS.gene043618.t1 MTR_8g087860 50.000 68 34 0 9 76 18 85 1.53e-16 76.6
MS.gene043618.t1 MTR_5g032150 29.384 211 130 6 9 201 2 211 1.65e-16 76.3
MS.gene043618.t1 MTR_2g017865 40.385 104 61 1 9 112 17 119 1.97e-16 76.6
MS.gene043618.t1 MTR_3g102570 41.346 104 58 3 9 111 2 103 2.22e-16 77.0
MS.gene043618.t1 MTR_1g101970 50.000 68 34 0 9 76 2 69 2.43e-16 74.7
MS.gene043618.t1 MTR_5g032520 28.169 213 129 6 9 201 2 210 3.29e-16 75.1
MS.gene043618.t1 MTR_4g109830 46.377 69 36 1 9 76 2 70 5.40e-16 74.7
MS.gene043618.t1 MTR_8g033220 46.154 78 42 0 10 87 3 80 8.15e-16 74.3
MS.gene043618.t1 MTR_7g075870 37.273 110 67 1 10 119 3 110 8.26e-16 73.9
MS.gene043618.t1 MTR_6g464720 47.826 69 35 1 9 76 2 70 8.36e-16 74.7
MS.gene043618.t1 MTR_2g461710 55.357 56 25 0 9 64 2 57 8.57e-16 69.7
MS.gene043618.t1 MTR_8g033220 46.154 78 42 0 10 87 3 80 9.15e-16 73.9
MS.gene043618.t1 MTR_3g109930 33.333 138 88 2 27 163 20 154 1.38e-15 72.4
MS.gene043618.t1 MTR_2g009890 47.059 68 36 0 9 76 2 69 2.21e-15 73.9
MS.gene043618.t1 MTR_5g046790 45.070 71 36 1 9 79 2 69 2.44e-15 72.8
MS.gene043618.t1 MTR_0003s0590 50.000 68 34 0 9 76 2 69 2.97e-15 73.2
MS.gene043618.t1 MTR_8g066260 40.964 83 46 1 9 91 2 81 3.17e-15 72.8
MS.gene043618.t1 MTR_3g437790 33.094 139 84 4 26 159 30 164 4.07e-15 71.6
MS.gene043618.t1 MTR_4g084740 47.368 76 38 2 9 83 2 76 5.53e-15 73.2
MS.gene043618.t1 MTR_6g015975 47.826 69 35 1 9 76 2 70 5.66e-15 72.4
MS.gene043618.t1 MTR_5g031000 47.059 68 36 0 9 76 2 69 6.43e-15 71.6
MS.gene043618.t1 MTR_7g016600 47.826 69 35 1 9 76 2 70 6.69e-15 72.0
MS.gene043618.t1 MTR_5g031000 47.059 68 36 0 9 76 2 69 6.99e-15 72.0
MS.gene043618.t1 MTR_5g021270 50.000 70 33 1 9 76 2 71 8.56e-15 71.6
MS.gene043618.t1 MTR_5g021270 50.000 70 33 1 9 76 2 71 8.87e-15 71.6
MS.gene043618.t1 MTR_7g075870 36.937 111 67 2 10 119 3 111 1.71e-14 70.5
MS.gene043618.t1 MTR_5g066960 49.123 57 29 0 9 65 2 58 2.18e-14 66.2
MS.gene043618.t1 MTR_5g046870 46.377 69 36 1 9 76 2 70 2.62e-14 67.4
MS.gene043618.t1 MTR_1g029670 46.970 66 34 1 9 74 2 66 5.41e-14 68.2
MS.gene043618.t1 MTR_3g084980 55.357 56 25 0 9 64 2 57 6.14e-14 69.3
MS.gene043618.t1 MTR_7g016630 42.029 69 39 1 9 76 2 70 9.78e-14 68.9
MS.gene043618.t1 MTR_4g109810 50.877 57 28 0 9 65 2 58 9.87e-14 68.6
MS.gene043618.t1 MTR_8g097090 53.571 56 26 0 9 64 2 57 1.12e-13 68.6
MS.gene043618.t1 MTR_3g088615 46.970 66 34 1 9 74 2 66 1.31e-13 67.4
MS.gene043618.t1 MTR_1g038300 45.714 70 36 1 9 76 2 71 1.80e-13 67.8
MS.gene043618.t1 MTR_3g113030 47.619 63 33 0 9 71 2 64 1.89e-13 67.8
MS.gene043618.t1 MTR_7g075850 44.286 70 37 1 9 76 2 71 2.37e-13 67.8
MS.gene043618.t1 MTR_4g093030 43.836 73 39 1 9 79 2 74 1.70e-12 63.9
MS.gene043618.t1 MTR_1g041615 37.383 107 58 2 20 125 17 115 1.91e-12 63.2
MS.gene043618.t1 MTR_4g108720 28.977 176 103 9 9 172 2 167 3.30e-12 65.5
MS.gene043618.t1 MTR_4g036050 28.061 196 104 8 9 194 2 170 1.94e-11 61.6
MS.gene043618.t1 MTR_4g036050 27.461 193 102 8 9 190 2 167 2.28e-11 61.2
MS.gene043618.t1 MTR_4g036050 40.000 70 41 1 9 77 2 71 3.88e-11 60.5
MS.gene043618.t1 MTR_4g036050 40.000 70 41 1 9 77 2 71 4.15e-11 60.5
MS.gene043618.t1 MTR_4g051538 41.176 85 50 0 5 89 5 89 7.07e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene043618.t1 AT5G60440 53.723 188 80 3 5 189 3 186 3.71e-62 196
MS.gene043618.t1 AT2G24840 49.080 163 72 4 6 162 60 217 1.86e-44 150
MS.gene043618.t1 AT1G01530 43.229 192 97 4 4 192 2 184 6.96e-44 148
MS.gene043618.t1 AT1G65360 40.741 189 105 3 5 192 3 185 2.52e-43 146
MS.gene043618.t1 AT4G36590 45.181 166 77 4 5 160 3 164 7.78e-38 132
MS.gene043618.t1 AT2G34440 36.364 165 95 3 9 169 2 160 2.15e-27 103
MS.gene043618.t1 AT3G04100 32.099 162 106 3 2 159 7 168 6.37e-25 98.2
MS.gene043618.t1 AT3G66656 42.857 119 64 1 9 123 2 120 7.17e-25 97.1
MS.gene043618.t1 AT1G72350 56.164 73 30 1 9 81 43 113 1.55e-21 89.7
MS.gene043618.t1 AT4G18960 31.513 238 137 9 5 226 15 242 3.92e-19 83.6
MS.gene043618.t1 AT4G22950 50.000 76 38 0 10 85 3 78 4.68e-19 81.6
MS.gene043618.t1 AT1G28460 27.950 161 112 2 5 163 4 162 4.70e-19 82.0
MS.gene043618.t1 AT4G22950 40.909 110 62 1 10 119 3 109 1.25e-18 81.6
MS.gene043618.t1 AT4G22950 40.909 110 62 1 10 119 3 109 1.25e-18 81.6
MS.gene043618.t1 AT4G09960 45.349 86 46 1 9 93 2 87 1.56e-18 81.3
MS.gene043618.t1 AT4G09960 45.349 86 46 1 9 93 2 87 2.00e-18 81.3
MS.gene043618.t1 AT4G09960 45.349 86 46 1 9 93 3 88 2.01e-18 81.3
MS.gene043618.t1 AT4G09960 45.349 86 46 1 9 93 12 97 2.47e-18 81.3
MS.gene043618.t1 AT4G09960 45.349 86 46 1 9 93 28 113 3.80e-18 81.3
MS.gene043618.t1 AT2G45660 51.471 68 33 0 10 77 3 70 4.72e-18 78.6
MS.gene043618.t1 AT2G45650 51.471 68 33 0 9 76 2 69 5.83e-18 80.5
MS.gene043618.t1 AT4G09960 45.349 86 46 1 9 93 97 182 1.01e-17 80.9
MS.gene043618.t1 AT2G45660 51.471 68 33 0 10 77 3 70 1.58e-17 78.6
MS.gene043618.t1 AT2G22540 30.682 176 92 5 9 177 2 154 6.44e-17 77.4
MS.gene043618.t1 AT2G22540 30.682 176 92 5 9 177 2 154 6.44e-17 77.4
MS.gene043618.t1 AT1G29962 28.144 167 104 4 5 165 4 160 8.81e-17 75.9
MS.gene043618.t1 AT4G24540 35.811 148 78 5 9 156 2 132 9.96e-17 76.6
MS.gene043618.t1 AT2G42830 46.053 76 41 0 1 76 9 84 1.51e-16 76.6
MS.gene043618.t1 AT2G42830 46.053 76 41 0 1 76 9 84 1.54e-16 76.6
MS.gene043618.t1 AT3G57230 45.588 68 37 0 9 76 2 69 1.89e-16 73.9
MS.gene043618.t1 AT3G58780 49.296 71 36 0 6 76 14 84 1.91e-16 76.3
MS.gene043618.t1 AT3G58780 49.296 71 36 0 6 76 20 90 2.08e-16 76.3
MS.gene043618.t1 AT3G61120 50.000 68 34 0 9 76 2 69 2.27e-16 76.3
MS.gene043618.t1 AT5G51870 52.239 67 32 0 10 76 3 69 2.28e-16 74.7
MS.gene043618.t1 AT5G51870 52.239 67 32 0 10 76 3 69 2.82e-16 75.1
MS.gene043618.t1 AT5G51870 48.611 72 37 0 5 76 21 92 4.14e-16 74.3
MS.gene043618.t1 AT3G58780 49.296 71 36 0 6 76 14 84 4.30e-16 75.9
MS.gene043618.t1 AT5G51870 52.239 67 32 0 10 76 3 69 4.40e-16 74.7
MS.gene043618.t1 AT5G51870 52.239 67 32 0 10 76 13 79 4.82e-16 75.1
MS.gene043618.t1 AT3G57390 48.529 68 35 0 9 76 2 69 6.03e-16 74.7
MS.gene043618.t1 AT5G62165 47.761 67 35 0 10 76 3 69 6.20e-16 71.6
MS.gene043618.t1 AT4G37940 47.059 68 36 0 9 76 2 69 6.68e-16 73.6
MS.gene043618.t1 AT1G17310 53.165 79 35 1 8 86 47 123 6.73e-16 74.3
MS.gene043618.t1 AT4G37940 47.059 68 36 0 9 76 2 69 8.00e-16 73.9
MS.gene043618.t1 AT5G10140 49.275 69 34 1 9 76 2 70 8.03e-16 72.8
MS.gene043618.t1 AT1G17310 53.165 79 35 1 8 86 58 134 8.06e-16 74.3
MS.gene043618.t1 AT4G37940 47.059 68 36 0 9 76 2 69 8.22e-16 74.3
MS.gene043618.t1 AT5G13790 41.935 93 45 1 9 101 2 85 8.60e-16 75.1
MS.gene043618.t1 AT1G22130 36.190 105 66 1 9 112 2 106 8.76e-16 75.5
MS.gene043618.t1 AT5G62165 47.761 67 35 0 10 76 3 69 1.03e-15 72.4
MS.gene043618.t1 AT5G62165 47.761 67 35 0 10 76 3 69 1.03e-15 72.4
MS.gene043618.t1 AT5G62165 47.761 67 35 0 10 76 3 69 1.03e-15 72.4
MS.gene043618.t1 AT1G69120 40.659 91 51 1 9 99 2 89 1.05e-15 73.9
MS.gene043618.t1 AT4G11880 48.611 72 36 1 10 80 3 74 1.06e-15 72.8
MS.gene043618.t1 AT4G11880 48.611 72 36 1 10 80 3 74 1.06e-15 72.8
MS.gene043618.t1 AT5G13790 50.000 68 34 0 9 76 2 69 1.22e-15 74.3
MS.gene043618.t1 AT1G77980 37.143 105 65 1 9 112 2 106 1.23e-15 75.1
MS.gene043618.t1 AT5G10140 49.275 69 34 1 9 76 2 70 1.34e-15 72.8
MS.gene043618.t1 AT5G10140 49.275 69 34 1 9 76 2 70 1.37e-15 72.8
MS.gene043618.t1 AT5G10140 49.275 69 34 1 9 76 2 70 1.41e-15 73.2
MS.gene043618.t1 AT3G57390 48.529 68 35 0 9 76 2 69 1.42e-15 73.9
MS.gene043618.t1 AT5G62165 47.761 67 35 0 10 76 3 69 1.54e-15 72.0
MS.gene043618.t1 AT5G62165 47.761 67 35 0 10 76 3 69 1.54e-15 72.0
MS.gene043618.t1 AT5G62165 47.761 67 35 0 10 76 3 69 1.54e-15 72.0
MS.gene043618.t1 AT5G62165 47.761 67 35 0 10 76 3 69 1.54e-15 72.0
MS.gene043618.t1 AT5G62165 47.761 67 35 0 10 76 3 69 1.54e-15 72.0
MS.gene043618.t1 AT3G57230 45.588 68 37 0 9 76 2 69 1.57e-15 73.6
MS.gene043618.t1 AT3G57230 45.588 68 37 0 9 76 2 69 1.57e-15 73.6
MS.gene043618.t1 AT3G54340 47.143 70 35 1 9 76 2 71 1.97e-15 73.2
MS.gene043618.t1 AT4G11880 48.611 72 36 1 10 80 3 74 1.99e-15 73.2
MS.gene043618.t1 AT4G11880 48.611 72 36 1 10 80 3 74 1.99e-15 73.2
MS.gene043618.t1 AT1G69120 40.659 91 51 1 9 99 2 89 2.10e-15 73.6
MS.gene043618.t1 AT1G77950 44.737 76 40 2 9 83 2 76 2.44e-15 73.6
MS.gene043618.t1 AT1G77950 44.737 76 40 2 9 83 2 76 2.44e-15 73.6
MS.gene043618.t1 AT1G77950 44.737 76 40 2 9 83 2 76 2.44e-15 73.6
MS.gene043618.t1 AT1G77950 44.737 76 40 2 9 83 2 76 2.44e-15 73.6
MS.gene043618.t1 AT5G51860 50.746 67 33 0 10 76 3 69 2.47e-15 72.4
MS.gene043618.t1 AT5G51860 50.746 67 33 0 10 76 3 69 3.54e-15 72.4
MS.gene043618.t1 AT1G28450 26.286 175 123 3 5 173 4 178 3.59e-15 71.6
MS.gene043618.t1 AT5G60910 47.887 71 34 1 9 79 2 69 3.74e-15 72.8
MS.gene043618.t1 AT2G22630 45.588 68 37 0 9 76 2 69 3.74e-15 72.4
MS.gene043618.t1 AT2G22630 45.588 68 37 0 9 76 2 69 3.74e-15 72.4
MS.gene043618.t1 AT5G62165 47.761 67 35 0 10 76 3 69 3.90e-15 71.6
MS.gene043618.t1 AT5G62165 47.761 67 35 0 10 76 3 69 3.90e-15 71.6
MS.gene043618.t1 AT3G30260 28.485 165 100 4 9 172 2 149 3.95e-15 72.8
MS.gene043618.t1 AT5G62165 47.761 67 35 0 10 76 3 69 3.98e-15 72.0
MS.gene043618.t1 AT5G62165 47.761 67 35 0 10 76 3 69 3.98e-15 72.0
MS.gene043618.t1 AT5G62165 47.761 67 35 0 10 76 3 69 3.98e-15 72.0
MS.gene043618.t1 AT5G20240 47.143 70 35 1 9 76 2 71 5.29e-15 70.5
MS.gene043618.t1 AT5G20240 47.143 70 35 1 9 76 2 71 5.44e-15 71.6
MS.gene043618.t1 AT2G22540 57.143 56 24 0 9 64 2 57 5.60e-15 72.0
MS.gene043618.t1 AT1G26310 46.377 69 36 1 9 76 2 70 6.51e-15 72.4
MS.gene043618.t1 AT5G15800 28.750 240 130 9 9 224 2 224 7.64e-15 72.0
MS.gene043618.t1 AT3G58780 52.459 61 29 0 6 66 14 74 1.54e-14 70.9
MS.gene043618.t1 AT3G58780 52.459 61 29 0 6 66 14 74 2.09e-14 71.2
MS.gene043618.t1 AT5G15800 47.826 69 35 1 9 76 2 70 2.30e-14 70.9
MS.gene043618.t1 AT2G14210 44.928 69 37 1 9 76 2 70 2.71e-14 70.1
MS.gene043618.t1 AT2G14210 44.928 69 37 1 9 76 2 70 3.36e-14 70.1
MS.gene043618.t1 AT2G03710 53.571 56 26 0 9 64 2 57 3.72e-14 68.9
MS.gene043618.t1 AT3G02310 46.377 69 36 1 9 76 2 70 6.60e-14 68.6
MS.gene043618.t1 AT5G23260 43.617 94 45 3 5 90 12 105 8.02e-14 69.3
MS.gene043618.t1 AT1G24260 53.571 56 26 0 9 64 2 57 8.42e-14 68.9
MS.gene043618.t1 AT5G65050 44.928 69 37 1 9 76 2 70 8.46e-14 67.8
MS.gene043618.t1 AT5G23260 43.617 94 45 3 5 90 12 105 8.73e-14 69.3
MS.gene043618.t1 AT1G24260 53.571 56 26 0 9 64 2 57 8.83e-14 68.9
MS.gene043618.t1 AT1G24260 53.571 56 26 0 9 64 2 57 8.90e-14 68.9
MS.gene043618.t1 AT2G03710 53.571 56 26 0 9 64 2 57 1.09e-13 68.9
MS.gene043618.t1 AT2G03710 53.571 56 26 0 9 64 2 57 1.13e-13 68.9
MS.gene043618.t1 AT5G65050 44.928 69 37 1 9 76 2 70 1.35e-13 67.4
MS.gene043618.t1 AT5G65050 44.928 69 37 1 9 76 2 70 1.43e-13 67.4
MS.gene043618.t1 AT5G23260 43.182 88 44 2 9 90 2 89 1.46e-13 68.2
MS.gene043618.t1 AT5G23260 43.182 88 44 2 9 90 2 89 1.61e-13 68.2
MS.gene043618.t1 AT5G65050 44.928 69 37 1 9 76 2 70 1.66e-13 67.0
MS.gene043618.t1 AT3G02310 53.571 56 26 0 9 64 2 57 1.72e-13 68.2
MS.gene043618.t1 AT5G65060 44.928 69 37 1 9 76 2 70 2.77e-13 66.6
MS.gene043618.t1 AT1G47760 33.621 116 62 3 9 123 2 103 2.78e-13 66.6
MS.gene043618.t1 AT1G71692 44.286 70 38 1 9 77 2 71 2.90e-13 67.0
MS.gene043618.t1 AT5G65060 44.928 69 37 1 9 76 2 70 2.95e-13 66.6
MS.gene043618.t1 AT5G65060 44.928 69 37 1 9 76 2 70 3.18e-13 66.6
MS.gene043618.t1 AT5G65070 47.368 57 30 0 9 65 2 58 7.73e-13 64.3
MS.gene043618.t1 AT5G65070 47.368 57 30 0 9 65 2 58 1.69e-12 64.7
MS.gene043618.t1 AT5G65070 47.368 57 30 0 9 65 2 58 2.92e-12 64.3
MS.gene043618.t1 AT5G65070 47.368 57 30 0 9 65 2 58 3.24e-12 64.3
MS.gene043618.t1 AT5G65070 47.368 57 30 0 9 65 2 58 3.96e-12 64.3
MS.gene043618.t1 AT2G03060 29.379 177 96 9 9 164 2 170 7.36e-12 64.7
MS.gene043618.t1 AT2G03060 29.379 177 96 9 9 164 2 170 7.36e-12 64.7
MS.gene043618.t1 AT2G03060 29.379 177 96 9 9 164 2 170 7.36e-12 64.7
MS.gene043618.t1 AT2G03060 29.379 177 96 9 9 164 2 170 7.44e-12 64.7
MS.gene043618.t1 AT1G18750 26.733 202 124 7 9 188 2 201 8.37e-12 64.3
MS.gene043618.t1 AT1G18750 26.733 202 124 7 9 188 2 201 1.03e-11 64.3
MS.gene043618.t1 AT1G18750 38.961 77 44 2 9 83 2 77 1.17e-11 63.9
MS.gene043618.t1 AT1G46408 33.613 119 70 4 10 119 5 123 1.75e-11 62.8
MS.gene043618.t1 AT1G69540 33.636 110 65 3 9 117 2 104 1.85e-11 63.2
MS.gene043618.t1 AT1G69540 33.636 110 65 3 9 117 2 104 2.29e-11 63.2
MS.gene043618.t1 AT4G37435 40.278 72 42 1 9 79 2 73 3.32e-11 60.8
MS.gene043618.t1 AT5G65080 48.333 60 29 1 5 62 3 62 4.69e-11 60.5
MS.gene043618.t1 AT5G27130 40.000 85 47 2 2 82 6 90 5.08e-11 61.6
MS.gene043618.t1 AT5G65080 43.548 62 35 0 1 62 1 62 5.72e-11 60.5

Find 64 sgRNAs with CRISPR-Local

Find 80 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGACGGCCGGGACTCAATTT+TGG 0.228205 3.2:+45205281 MS.gene043618:CDS
TTGGTTTGGCTTCAACAATA+TGG 0.281947 3.2:+45205552 MS.gene043618:CDS
ATCTGAGCTTGTGGAGGATT+TGG 0.315191 3.2:-45205487 None:intergenic
TGGTGGGCTGGTCCCATTGA+TGG 0.319959 3.2:+45205301 MS.gene043618:CDS
ATTGCATGGTACCATTGTTT+TGG 0.337688 3.2:-45205144 None:intergenic
TTGTTGATCATCATGTTGAT+AGG 0.343214 3.2:+45205380 MS.gene043618:CDS
ATGTTGCAACCTCATTGGTT+TGG 0.406166 3.2:+45205538 MS.gene043618:CDS
GTCCCATTGATGGGATGAAT+CGG 0.407918 3.2:+45205311 MS.gene043618:CDS
AGCCACTTGCGCAAGACGGC+CGG 0.408126 3.2:+45205268 MS.gene043618:CDS
ACCCTATGTTGCAACCTCAT+TGG 0.412021 3.2:+45205533 MS.gene043618:CDS
TGGTTTGGCTTCAACAATAT+GGG 0.414863 3.2:+45205553 MS.gene043618:CDS
TGTTGATAGGCTTGTAATCC+AGG 0.417213 3.2:+45205393 MS.gene043618:CDS
GGTGGGCTGGTCCCATTGAT+GGG 0.419749 3.2:+45205302 MS.gene043618:CDS
CTTCTTGAATAATTCAAGTT+GGG 0.442228 3.2:-45205335 None:intergenic
TGAATTATTCAAGAAGGCTC+TGG 0.442548 3.2:+45205342 MS.gene043618:CDS
TCTATGACCGTATCAACATT+GGG 0.451696 3.2:-45205097 None:intergenic
GGCCCGATTCATCCCATCAA+TGG 0.457427 3.2:-45205314 None:intergenic
GTGGAGGATTTGGTTGATGA+TGG 0.460225 3.2:-45205477 None:intergenic
TCCCGGCCGTCTTGCGCAAG+TGG 0.479339 3.2:-45205270 None:intergenic
GCCACTTGCGCAAGACGGCC+GGG 0.492794 3.2:+45205269 MS.gene043618:CDS
ATCTATGACCGTATCAACAT+TGG 0.496031 3.2:-45205098 None:intergenic
GGGTTCTGATAAAACTGTGC+TGG 0.499287 3.2:-45205514 None:intergenic
GACTCAGATCAATCAGCTAC+TGG 0.504962 3.2:+45205216 MS.gene043618:CDS
GCCCGATTCATCCCATCAAT+GGG 0.506203 3.2:-45205313 None:intergenic
ACCAATGAGGTTGCAACATA+GGG 0.507520 3.2:-45205534 None:intergenic
TCCCATTGATGGGATGAATC+GGG 0.513278 3.2:+45205312 MS.gene043618:CDS
CCTTCTTGAATAATTCAAGT+TGG 0.516494 3.2:-45205336 None:intergenic
TCATAGATCATTATCTATCT+CGG 0.517214 3.2:+45205113 MS.gene043618:CDS
ATGATGGAGAGGCATGTTTG+AGG 0.521462 3.2:-45205461 None:intergenic
ACAGAGGGTGCAAAGCTCAC+TGG 0.525840 3.2:-45205014 None:intergenic
AACCAATGAGGTTGCAACAT+AGG 0.525962 3.2:-45205535 None:intergenic
AGTATTGAGCTCGCGCACGT+TGG 0.531885 3.2:-45205188 None:intergenic
GCTGGAAGCATCTGAGCTTG+TGG 0.533277 3.2:-45205496 None:intergenic
GCTCGCGCACGTTGGCGCTA+CGG 0.534754 3.2:-45205180 None:intergenic
GGAGGTGGATATGGACCGTC+CGG 0.535088 3.2:+45205580 MS.gene043618:CDS
CCAACTTGAATTATTCAAGA+AGG 0.535705 3.2:+45205336 MS.gene043618:CDS
AGCCCACCAAAATTGAGTCC+CGG 0.536645 3.2:-45205287 None:intergenic
TGGCCACCCCAATGTTGATA+CGG 0.542985 3.2:+45205090 MS.gene043618:CDS
GAGCTCGGATCAAAAGAATC+CGG 0.551507 3.2:-45205599 None:intergenic
AACGAAAATACCTTCTCTCC+AGG 0.551818 3.2:-45205067 None:intergenic
CTTTCTCGAAGCGCCGTAGT+GGG 0.553366 3.2:+45204978 MS.gene043618:CDS
ACTTTCTCGAAGCGCCGTAG+TGG 0.571963 3.2:+45204977 MS.gene043618:CDS
GCTGAGCCACTTGCGCAAGA+CGG 0.576977 3.2:+45205264 MS.gene043618:CDS
GGTTTGGCTTCAACAATATG+GGG 0.578983 3.2:+45205554 MS.gene043618:CDS
AGTGAGCTTTGCACCCTCTG+TGG 0.587031 3.2:+45205016 MS.gene043618:CDS
AGCAACATCTGCACCACAGA+GGG 0.595144 3.2:-45205029 None:intergenic
CTTCAACCATGTCAAGTGGA+AGG 0.599332 3.2:+45204891 None:intergenic
TGTGCTTCAACCATGTCAAG+TGG 0.603608 3.2:+45204887 None:intergenic
AGGTTTGAGTAGGAGCACCC+TGG 0.605264 3.2:-45205411 None:intergenic
CTTTCTTGAAGAGCCCACTA+CGG 0.610979 3.2:-45204991 None:intergenic
GGAAGCATCTGAGCTTGTGG+AGG 0.624119 3.2:-45205493 None:intergenic
CGGATCCCACCCCAAAACAA+TGG 0.631700 3.2:+45205133 MS.gene043618:CDS
GTTGATAGGCTTGTAATCCA+GGG 0.636489 3.2:+45205394 MS.gene043618:CDS
TGGTACCATGCAATTCATTG+AGG 0.638950 3.2:+45205153 MS.gene043618:CDS
GTGAGCCTCAATGAATTGCA+TGG 0.640763 3.2:-45205158 None:intergenic
GTTTGGCTTCAACAATATGG+GGG 0.642093 3.2:+45205555 MS.gene043618:CDS
GGATTTGGTTGATGATGGAG+AGG 0.642684 3.2:-45205472 None:intergenic
TTGTTGAAGCCAAACCAATG+AGG 0.650877 3.2:-45205547 None:intergenic
TTTGGCTTCAACAATATGGG+GGG 0.656547 3.2:+45205556 MS.gene043618:CDS
TGACCGTATCAACATTGGGG+TGG 0.665619 3.2:-45205093 None:intergenic
TCGGATCAAAAGAATCCGGA+CGG 0.689381 3.2:-45205595 None:intergenic
TCAAGTGGAAGGAAAAGCCG+AGG 0.705721 3.2:+45204902 MS.gene043618:CDS
CTATGACCGTATCAACATTG+GGG 0.709949 3.2:-45205096 None:intergenic
GAGCAACATCTGCACCACAG+AGG 0.729838 3.2:-45205030 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTCATCTCAATCTTT+TGG - chr3.2:45204931-45204950 None:intergenic 20.0%
! GAATTGTTTCCAAGAAAAAA+AGG - chr3.2:45205439-45205458 None:intergenic 25.0%
! TCATAGATCATTATCTATCT+CGG + chr3.2:45205113-45205132 MS.gene043618:CDS 25.0%
!! CTTCTTGAATAATTCAAGTT+GGG - chr3.2:45205338-45205357 None:intergenic 25.0%
AAAAAAGGAAAGGTTTGAGT+AGG - chr3.2:45205424-45205443 None:intergenic 30.0%
CCAACTTGAATTATTCAAGA+AGG + chr3.2:45205336-45205355 MS.gene043618:CDS 30.0%
CCTTCTTGAATAATTCAAGT+TGG - chr3.2:45205339-45205358 None:intergenic 30.0%
GTTTCCAAGAAAAAAAGGAA+AGG - chr3.2:45205434-45205453 None:intergenic 30.0%
TTGTTGATCATCATGTTGAT+AGG + chr3.2:45205380-45205399 MS.gene043618:CDS 30.0%
!!! CAAACCTTTCCTTTTTTTCT+TGG + chr3.2:45205427-45205446 MS.gene043618:CDS 30.0%
ATCTATGACCGTATCAACAT+TGG - chr3.2:45205101-45205120 None:intergenic 35.0%
TCTATGACCGTATCAACATT+GGG - chr3.2:45205100-45205119 None:intergenic 35.0%
TGAATTATTCAAGAAGGCTC+TGG + chr3.2:45205342-45205361 MS.gene043618:CDS 35.0%
! ATTGCATGGTACCATTGTTT+TGG - chr3.2:45205147-45205166 None:intergenic 35.0%
! TGGTTTGGCTTCAACAATAT+GGG + chr3.2:45205553-45205572 MS.gene043618:CDS 35.0%
! TTGCATGGTACCATTGTTTT+GGG - chr3.2:45205146-45205165 None:intergenic 35.0%
!! TTGGTTTGGCTTCAACAATA+TGG + chr3.2:45205552-45205571 MS.gene043618:CDS 35.0%
AACCAATGAGGTTGCAACAT+AGG - chr3.2:45205538-45205557 None:intergenic 40.0%
AACGAAAATACCTTCTCTCC+AGG - chr3.2:45205070-45205089 None:intergenic 40.0%
ACCAATGAGGTTGCAACATA+GGG - chr3.2:45205537-45205556 None:intergenic 40.0%
CTATGACCGTATCAACATTG+GGG - chr3.2:45205099-45205118 None:intergenic 40.0%
TGGTACCATGCAATTCATTG+AGG + chr3.2:45205153-45205172 MS.gene043618:CDS 40.0%
TTGTTGAAGCCAAACCAATG+AGG - chr3.2:45205550-45205569 None:intergenic 40.0%
! ATGTTGCAACCTCATTGGTT+TGG + chr3.2:45205538-45205557 MS.gene043618:CDS 40.0%
! GGTTTGGCTTCAACAATATG+GGG + chr3.2:45205554-45205573 MS.gene043618:CDS 40.0%
! GTTGATAGGCTTGTAATCCA+GGG + chr3.2:45205394-45205413 MS.gene043618:CDS 40.0%
! GTTTGGCTTCAACAATATGG+GGG + chr3.2:45205555-45205574 MS.gene043618:CDS 40.0%
! TGTTGATAGGCTTGTAATCC+AGG + chr3.2:45205393-45205412 MS.gene043618:CDS 40.0%
! TTTGGCTTCAACAATATGGG+GGG + chr3.2:45205556-45205575 MS.gene043618:CDS 40.0%
!! TGCATGGTACCATTGTTTTG+GGG - chr3.2:45205145-45205164 None:intergenic 40.0%
!!! GGAGAGAAGGTATTTTCGTT+TGG + chr3.2:45205070-45205089 MS.gene043618:CDS 40.0%
ACCCTATGTTGCAACCTCAT+TGG + chr3.2:45205533-45205552 MS.gene043618:CDS 45.0%
ATCTGAGCTTGTGGAGGATT+TGG - chr3.2:45205490-45205509 None:intergenic 45.0%
CTTTCTTGAAGAGCCCACTA+CGG - chr3.2:45204994-45205013 None:intergenic 45.0%
GACTCAGATCAATCAGCTAC+TGG + chr3.2:45205216-45205235 MS.gene043618:CDS 45.0%
GTCCCATTGATGGGATGAAT+CGG + chr3.2:45205311-45205330 MS.gene043618:CDS 45.0%
GTGAGCCTCAATGAATTGCA+TGG - chr3.2:45205161-45205180 None:intergenic 45.0%
TCCCATTGATGGGATGAATC+GGG + chr3.2:45205312-45205331 MS.gene043618:CDS 45.0%
! ATGATGGAGAGGCATGTTTG+AGG - chr3.2:45205464-45205483 None:intergenic 45.0%
! GGGTTCTGATAAAACTGTGC+TGG - chr3.2:45205517-45205536 None:intergenic 45.0%
! TCTCAATCTTTTGGCGACCT+CGG - chr3.2:45204922-45204941 None:intergenic 45.0%
! TGTTTTCTCACCTGGAGAGA+AGG + chr3.2:45205057-45205076 MS.gene043618:CDS 45.0%
!! GGATTTGGTTGATGATGGAG+AGG - chr3.2:45205475-45205494 None:intergenic 45.0%
!! GTGGAGGATTTGGTTGATGA+TGG - chr3.2:45205480-45205499 None:intergenic 45.0%
!!! ATGGTACCATTGTTTTGGGG+TGG - chr3.2:45205142-45205161 None:intergenic 45.0%
!!! TGGTACCATTGTTTTGGGGT+GGG - chr3.2:45205141-45205160 None:intergenic 45.0%
AGCAACATCTGCACCACAGA+GGG - chr3.2:45205032-45205051 None:intergenic 50.0%
AGCCCACCAAAATTGAGTCC+CGG - chr3.2:45205290-45205309 None:intergenic 50.0%
GCCCGATTCATCCCATCAAT+GGG - chr3.2:45205316-45205335 None:intergenic 50.0%
TCAAGTGGAAGGAAAAGCCG+AGG + chr3.2:45204902-45204921 MS.gene043618:CDS 50.0%
TGACCGTATCAACATTGGGG+TGG - chr3.2:45205096-45205115 None:intergenic 50.0%
TGGCCACCCCAATGTTGATA+CGG + chr3.2:45205090-45205109 MS.gene043618:CDS 50.0%
TTCAACAATATGGGGGGAGG+AGG + chr3.2:45205562-45205581 MS.gene043618:CDS 50.0%
!! GCTCTCGTTGTTTTCTCACC+TGG + chr3.2:45205049-45205068 MS.gene043618:CDS 50.0%
AACAATATGGGGGGAGGAGG+TGG + chr3.2:45205565-45205584 MS.gene043618:CDS 55.0%
AGTGAGCTTTGCACCCTCTG+TGG + chr3.2:45205016-45205035 MS.gene043618:CDS 55.0%
CGGATCCCACCCCAAAACAA+TGG + chr3.2:45205133-45205152 MS.gene043618:CDS 55.0%
GAGCAACATCTGCACCACAG+AGG - chr3.2:45205033-45205052 None:intergenic 55.0%
GGCCCGATTCATCCCATCAA+TGG - chr3.2:45205317-45205336 None:intergenic 55.0%
GGCTTCAACAATATGGGGGG+AGG + chr3.2:45205559-45205578 MS.gene043618:CDS 55.0%
! ACAGAGGGTGCAAAGCTCAC+TGG - chr3.2:45205017-45205036 None:intergenic 55.0%
! AGACGGCCGGGACTCAATTT+TGG + chr3.2:45205281-45205300 MS.gene043618:CDS 55.0%
! AGTATTGAGCTCGCGCACGT+TGG - chr3.2:45205191-45205210 None:intergenic 55.0%
!! ACTTTCTCGAAGCGCCGTAG+TGG + chr3.2:45204977-45204996 MS.gene043618:CDS 55.0%
!! AGGTTTGAGTAGGAGCACCC+TGG - chr3.2:45205414-45205433 None:intergenic 55.0%
!! CTTTCTCGAAGCGCCGTAGT+GGG + chr3.2:45204978-45204997 MS.gene043618:CDS 55.0%
!! GCTGGAAGCATCTGAGCTTG+TGG - chr3.2:45205499-45205518 None:intergenic 55.0%
!! GGAAGCATCTGAGCTTGTGG+AGG - chr3.2:45205496-45205515 None:intergenic 55.0%
!! GGCCGGGACTCAATTTTGGT+GGG + chr3.2:45205285-45205304 MS.gene043618:CDS 55.0%
!! GGGACTCAATTTTGGTGGGC+TGG + chr3.2:45205289-45205308 MS.gene043618:CDS 55.0%
ATGGGGGGAGGAGGTGGATA+TGG + chr3.2:45205571-45205590 MS.gene043618:CDS 60.0%
GCTGAGCCACTTGCGCAAGA+CGG + chr3.2:45205264-45205283 MS.gene043618:CDS 60.0%
GGAGGTGGATATGGACCGTC+CGG + chr3.2:45205580-45205599 MS.gene043618:CDS 60.0%
! CGGCCGGGACTCAATTTTGG+TGG + chr3.2:45205284-45205303 MS.gene043618:CDS 60.0%
!! GGTGGGCTGGTCCCATTGAT+GGG + chr3.2:45205302-45205321 MS.gene043618:CDS 60.0%
!! TGGTGGGCTGGTCCCATTGA+TGG + chr3.2:45205301-45205320 MS.gene043618:CDS 60.0%
AGCCACTTGCGCAAGACGGC+CGG + chr3.2:45205268-45205287 MS.gene043618:CDS 65.0%
GCCACTTGCGCAAGACGGCC+GGG + chr3.2:45205269-45205288 MS.gene043618:CDS 70.0%
GCTCGCGCACGTTGGCGCTA+CGG - chr3.2:45205183-45205202 None:intergenic 70.0%
TCCCGGCCGTCTTGCGCAAG+TGG - chr3.2:45205273-45205292 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr3.2 gene 45204899 45205612 45204899 ID=MS.gene043618
chr3.2 mRNA 45204899 45205612 45204899 ID=MS.gene043618.t1;Parent=MS.gene043618
chr3.2 exon 45204899 45205612 45204899 ID=MS.gene043618.t1.exon1;Parent=MS.gene043618.t1
chr3.2 CDS 45204899 45205612 45204899 ID=cds.MS.gene043618.t1;Parent=MS.gene043618.t1
Gene Sequence

>MS.gene043618

ATGTCAAGTGGAAGGAAAAGCCGAGGTCGCCAAAAGATTGAGATGAAAAAAATGAGCAACGAGAGCAACTTGCAAGTGACTTTCTCGAAGCGCCGTAGTGGGCTCTTCAAGAAAGCCAGTGAGCTTTGCACCCTCTGTGGTGCAGATGTTGCTCTCGTTGTTTTCTCACCTGGAGAGAAGGTATTTTCGTTTGGCCACCCCAATGTTGATACGGTCATAGATCATTATCTATCTCGGATCCCACCCCAAAACAATGGTACCATGCAATTCATTGAGGCTCACCGTAGCGCCAACGTGCGCGAGCTCAATACTCAGCTGACTCAGATCAATCAGCTACTGGACATCGAGAAGAAACGTGCTGAAGAGCTGAGCCACTTGCGCAAGACGGCCGGGACTCAATTTTGGTGGGCTGGTCCCATTGATGGGATGAATCGGGCCCAACTTGAATTATTCAAGAAGGCTCTGGATGAGCTTAAGAAAATTGTTGATCATCATGTTGATAGGCTTGTAATCCAGGGTGCTCCTACTCAAACCTTTCCTTTTTTTCTTGGAAACAATTCATCCTCAAACATGCCTCTCCATCATCAACCAAATCCTCCACAAGCTCAGATGCTTCCAGCACAGTTTTATCAGAACCCTATGTTGCAACCTCATTGGTTTGGCTTCAACAATATGGGGGGAGGAGGTGGATATGGACCGTCCGGATTCTTTTGA
Protein sequence

>MS.gene043618.t1

MSSGRKSRGRQKIEMKKMSNESNLQVTFSKRRSGLFKKASELCTLCGADVALVVFSPGEKVFSFGHPNVDTVIDHYLSRIPPQNNGTMQFIEAHRSANVRELNTQLTQINQLLDIEKKRAEELSHLRKTAGTQFWWAGPIDGMNRAQLELFKKALDELKKIVDHHVDRLVIQGAPTQTFPFFLGNNSSSNMPLHHQPNPPQAQMLPAQFYQNPMLQPHWFGFNNMGGGGGYGPSGFF