AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene043620

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene043620.t1 MTR_8g043650 86.498 237 32 0 1 237 1 237 2.13e-156 433
MS.gene043620.t1 MTR_2g030740 89.451 237 25 0 1 237 1 237 3.85e-148 412
MS.gene043620.t1 MTR_3g052920 90.367 218 21 0 1 218 1 218 6.32e-148 412
MS.gene043620.t1 MTR_1g105920 88.073 218 26 0 1 218 1 218 8.30e-146 407
MS.gene043620.t1 MTR_1g105910 85.232 237 35 0 1 237 1 237 3.06e-145 405
MS.gene043620.t1 MTR_1g012570 84.388 237 37 0 1 237 1 237 3.68e-138 387
MS.gene043620.t1 MTR_1g105905 78.182 220 48 0 18 237 1 220 2.02e-130 367
MS.gene043620.t1 MTR_3g052870 82.192 219 20 1 1 219 1 200 1.17e-128 362
MS.gene043620.t1 MTR_1g106070 86.885 183 24 0 1 183 1 183 1.68e-118 335
MS.gene043620.t1 MTR_0121s0080 70.042 237 70 1 1 237 1 236 2.37e-118 337
MS.gene043620.t1 MTR_1g108510 71.915 235 48 3 1 225 1 227 1.65e-117 335
MS.gene043620.t1 MTR_3g030770 70.638 235 51 3 1 225 1 227 4.05e-116 331
MS.gene043620.t1 MTR_1g075600 70.222 225 67 0 1 225 1 225 4.43e-115 329
MS.gene043620.t1 MTR_2g085280 65.678 236 81 0 1 236 1 236 1.84e-114 327
MS.gene043620.t1 MTR_2g085250 65.678 236 81 0 1 236 1 236 5.04e-114 326
MS.gene043620.t1 MTR_2g093190 71.064 235 50 3 1 225 1 227 2.86e-113 324
MS.gene043620.t1 MTR_5g055100 64.557 237 84 0 1 237 1 237 1.26e-112 323
MS.gene043620.t1 MTR_1g077360 68.000 225 72 0 1 225 1 225 4.48e-112 321
MS.gene043620.t1 MTR_1g108580 69.362 235 54 3 1 225 1 227 3.24e-111 319
MS.gene043620.t1 MTR_5g045560 66.245 237 80 0 1 237 1 237 1.41e-107 310
MS.gene043620.t1 MTR_5g053390 66.667 225 75 0 1 225 1 225 6.21e-106 306
MS.gene043620.t1 MTR_7g062350 65.022 223 76 2 16 237 27 248 3.68e-100 291
MS.gene043620.t1 MTR_0121s0100 75.758 132 32 0 1 132 1 132 5.78e-67 203
MS.gene043620.t1 MTR_3g030780 74.419 129 33 0 1 129 1 129 6.76e-65 198
MS.gene043620.t1 MTR_1g075570 61.798 178 54 1 18 195 1 164 1.16e-64 198
MS.gene043620.t1 MTR_3g080940 56.875 160 69 0 1 160 1 160 8.25e-63 195
MS.gene043620.t1 MTR_3g067910 70.588 102 30 0 21 122 2 103 5.87e-47 151
MS.gene043620.t1 MTR_2g105290 39.766 171 93 2 5 172 8 171 7.83e-40 135
MS.gene043620.t1 MTR_8g086290 40.462 173 89 3 5 170 8 173 1.09e-39 135
MS.gene043620.t1 MTR_7g028448 45.161 155 73 3 5 159 8 150 8.82e-34 120
MS.gene043620.t1 MTR_4g036915 45.161 155 73 3 5 159 8 150 8.82e-34 120
MS.gene043620.t1 MTR_1g108500 43.931 173 53 4 8 158 94 244 9.81e-32 119
MS.gene043620.t1 MTR_4g127140 38.043 184 94 4 5 175 8 184 6.46e-31 113
MS.gene043620.t1 MTR_3g067875 83.929 56 9 0 18 73 1 56 1.83e-27 100
MS.gene043620.t1 MTR_3g067915 53.191 94 44 0 33 126 3 96 1.35e-25 96.7
MS.gene043620.t1 MTR_1g047550 62.319 69 26 0 9 77 2 70 1.08e-24 96.7
MS.gene043620.t1 MTR_8g079502 62.319 69 26 0 9 77 2 70 2.24e-24 95.9
MS.gene043620.t1 MTR_8g046350 40.909 132 66 3 9 135 2 126 1.07e-23 93.6
MS.gene043620.t1 MTR_4g131030 40.517 116 54 2 9 109 2 117 1.15e-23 95.1
MS.gene043620.t1 MTR_1g054265 46.535 101 52 1 9 109 2 100 1.41e-23 93.6
MS.gene043620.t1 MTR_1g063160 48.544 103 51 2 9 109 2 104 1.45e-23 93.6
MS.gene043620.t1 MTR_3g067870 69.841 63 19 0 16 78 83 145 1.49e-23 93.2
MS.gene043620.t1 MTR_8g051580 46.535 101 52 1 9 109 2 100 1.58e-23 93.6
MS.gene043620.t1 MTR_4g094632 40.708 113 64 2 9 120 2 112 6.97e-21 86.3
MS.gene043620.t1 MTR_4g093970 34.545 165 85 3 10 153 29 191 7.71e-20 85.5
MS.gene043620.t1 MTR_3g005530 52.941 68 32 0 9 76 2 69 4.98e-19 82.8
MS.gene043620.t1 MTR_3g452380 42.453 106 51 1 3 108 11 106 1.08e-18 82.4
MS.gene043620.t1 MTR_4g094638 41.509 106 61 1 9 113 2 107 1.08e-18 80.9
MS.gene043620.t1 MTR_1g053070 49.383 81 41 0 9 89 2 82 2.91e-18 81.3
MS.gene043620.t1 MTR_4g102530 49.315 73 37 0 10 82 3 75 2.97e-18 80.5
MS.gene043620.t1 MTR_3g102570 37.795 127 71 4 9 129 2 126 6.65e-18 81.3
MS.gene043620.t1 MTR_5g066180 51.471 68 33 0 9 76 2 69 1.61e-17 79.0
MS.gene043620.t1 MTR_8g033270 51.471 68 33 0 9 76 2 69 2.31e-17 79.0
MS.gene043620.t1 MTR_8g087860 49.333 75 38 0 2 76 11 85 2.44e-17 78.6
MS.gene043620.t1 MTR_2g017865 41.346 104 60 1 9 112 17 119 3.39e-17 78.6
MS.gene043620.t1 MTR_8g022970 33.951 162 94 3 8 163 17 171 4.53e-17 76.6
MS.gene043620.t1 MTR_5g032520 28.638 213 128 6 9 201 2 210 6.04e-17 77.4
MS.gene043620.t1 MTR_1g101970 50.000 68 34 0 9 76 2 69 1.03e-16 75.9
MS.gene043620.t1 MTR_5g032150 29.858 211 129 6 9 201 2 211 1.27e-16 76.3
MS.gene043620.t1 MTR_4g109830 47.826 69 35 1 9 76 2 70 1.40e-16 76.3
MS.gene043620.t1 MTR_6g464720 49.275 69 34 1 9 76 2 70 1.47e-16 76.6
MS.gene043620.t1 MTR_7g075870 38.182 110 66 1 10 119 3 110 1.48e-16 75.9
MS.gene043620.t1 MTR_8g033220 47.436 78 41 0 10 87 3 80 1.71e-16 75.9
MS.gene043620.t1 MTR_8g033220 47.436 78 41 0 10 87 3 80 1.83e-16 75.9
MS.gene043620.t1 MTR_2g009890 48.529 68 35 0 9 76 2 69 3.38e-16 76.3
MS.gene043620.t1 MTR_0003s0590 51.471 68 33 0 9 76 2 69 4.14e-16 75.5
MS.gene043620.t1 MTR_3g437790 33.813 139 83 4 26 159 30 164 1.05e-15 73.2
MS.gene043620.t1 MTR_4g084740 48.684 76 37 2 9 83 2 76 1.19e-15 75.1
MS.gene043620.t1 MTR_6g015975 49.275 69 34 1 9 76 2 70 1.26e-15 73.9
MS.gene043620.t1 MTR_2g461710 55.357 56 25 0 9 64 2 57 1.33e-15 69.3
MS.gene043620.t1 MTR_7g016600 49.275 69 34 1 9 76 2 70 1.44e-15 73.9
MS.gene043620.t1 MTR_5g031000 48.529 68 35 0 9 76 2 69 1.45e-15 73.6
MS.gene043620.t1 MTR_8g066260 40.964 83 46 1 9 91 2 81 1.64e-15 73.6
MS.gene043620.t1 MTR_5g031000 48.529 68 35 0 9 76 2 69 1.69e-15 73.6
MS.gene043620.t1 MTR_7g075870 37.838 111 66 2 10 119 3 111 2.83e-15 72.4
MS.gene043620.t1 MTR_5g046790 45.070 71 36 1 9 79 2 69 3.45e-15 72.0
MS.gene043620.t1 MTR_5g046870 47.826 69 35 1 9 76 2 70 6.05e-15 69.3
MS.gene043620.t1 MTR_5g021270 35.714 126 71 2 9 134 2 117 6.62e-15 71.6
MS.gene043620.t1 MTR_5g021270 50.000 70 33 1 9 76 2 71 7.14e-15 71.6
MS.gene043620.t1 MTR_7g016630 43.478 69 38 1 9 76 2 70 1.82e-14 70.9
MS.gene043620.t1 MTR_5g066960 49.123 57 29 0 9 65 2 58 2.18e-14 66.2
MS.gene043620.t1 MTR_1g038300 47.143 70 35 1 9 76 2 71 3.33e-14 69.7
MS.gene043620.t1 MTR_3g088615 44.286 70 37 1 9 76 2 71 3.78e-14 68.6
MS.gene043620.t1 MTR_7g075850 45.714 70 36 1 9 76 2 71 5.32e-14 69.7
MS.gene043620.t1 MTR_3g109930 32.609 138 89 2 27 163 20 154 6.68e-14 67.8
MS.gene043620.t1 MTR_8g097090 46.377 69 36 1 9 76 2 70 6.89e-14 69.3
MS.gene043620.t1 MTR_1g029670 46.970 66 34 1 9 74 2 66 7.12e-14 67.8
MS.gene043620.t1 MTR_3g084980 55.357 56 25 0 9 64 2 57 7.14e-14 69.3
MS.gene043620.t1 MTR_4g109810 51.786 56 27 0 9 64 2 57 1.19e-13 68.6
MS.gene043620.t1 MTR_3g113030 47.619 63 33 0 9 71 2 64 2.33e-13 67.4
MS.gene043620.t1 MTR_4g108720 28.977 176 103 9 9 172 2 167 2.09e-12 65.9
MS.gene043620.t1 MTR_4g093030 41.892 74 43 0 9 82 2 75 3.17e-12 63.2
MS.gene043620.t1 MTR_4g051538 33.793 145 86 3 1 141 1 139 1.80e-11 62.4
MS.gene043620.t1 MTR_4g036050 40.000 70 41 1 9 77 2 71 2.06e-11 61.2
MS.gene043620.t1 MTR_4g036050 40.000 70 41 1 9 77 2 71 2.21e-11 61.2
MS.gene043620.t1 MTR_4g036050 40.000 70 41 1 9 77 2 71 2.45e-11 61.6
MS.gene043620.t1 MTR_4g036050 40.000 70 41 1 9 77 2 71 2.47e-11 61.2
MS.gene043620.t1 MTR_1g041615 36.449 107 59 2 20 125 17 115 4.25e-11 59.3
MS.gene043620.t1 MTR_2g045020 29.167 168 101 6 1 159 7 165 5.86e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene043620.t1 AT5G60440 53.191 188 81 3 5 189 3 186 4.53e-61 194
MS.gene043620.t1 AT2G24840 49.080 163 72 4 6 162 60 217 2.16e-43 147
MS.gene043620.t1 AT1G65360 39.153 189 108 3 5 192 3 185 8.53e-41 139
MS.gene043620.t1 AT1G01530 41.885 191 99 4 5 192 3 184 1.67e-40 139
MS.gene043620.t1 AT4G36590 46.341 164 78 4 5 160 3 164 9.54e-39 135
MS.gene043620.t1 AT2G34440 36.970 165 94 3 9 169 2 160 1.79e-28 106
MS.gene043620.t1 AT3G66656 43.697 119 63 1 9 123 2 120 8.87e-26 99.8
MS.gene043620.t1 AT3G04100 34.375 160 99 4 5 159 10 168 6.27e-24 95.5
MS.gene043620.t1 AT1G72350 56.164 73 30 1 9 81 43 113 1.13e-21 90.1
MS.gene043620.t1 AT1G28460 28.571 161 111 2 5 163 4 162 3.24e-20 85.1
MS.gene043620.t1 AT4G22950 51.316 76 37 0 10 85 3 78 9.44e-20 83.6
MS.gene043620.t1 AT4G22950 41.818 110 61 1 10 119 3 109 2.37e-19 83.6
MS.gene043620.t1 AT4G22950 41.818 110 61 1 10 119 3 109 2.37e-19 83.6
MS.gene043620.t1 AT4G09960 46.512 86 45 1 9 93 2 87 3.39e-19 83.2
MS.gene043620.t1 AT4G09960 46.512 86 45 1 9 93 2 87 4.31e-19 83.2
MS.gene043620.t1 AT4G09960 46.512 86 45 1 9 93 3 88 4.34e-19 83.2
MS.gene043620.t1 AT4G09960 46.512 86 45 1 9 93 12 97 5.76e-19 83.2
MS.gene043620.t1 AT2G45660 52.941 68 32 0 10 77 3 70 7.66e-19 80.9
MS.gene043620.t1 AT4G09960 46.512 86 45 1 9 93 28 113 8.48e-19 82.8
MS.gene043620.t1 AT4G18960 31.535 241 133 10 5 226 15 242 1.10e-18 82.4
MS.gene043620.t1 AT2G45650 52.941 68 32 0 9 76 2 69 1.22e-18 82.4
MS.gene043620.t1 AT2G45660 52.941 68 32 0 10 77 3 70 2.40e-18 80.9
MS.gene043620.t1 AT4G09960 46.512 86 45 1 9 93 97 182 2.44e-18 82.8
MS.gene043620.t1 AT1G29962 29.341 167 102 4 5 165 4 160 2.71e-18 80.1
MS.gene043620.t1 AT5G51870 50.685 73 36 0 4 76 20 92 1.09e-17 78.6
MS.gene043620.t1 AT2G22540 51.471 68 33 0 9 76 2 69 1.76e-17 79.0
MS.gene043620.t1 AT2G22540 51.471 68 33 0 9 76 2 69 1.76e-17 79.0
MS.gene043620.t1 AT5G51870 53.731 67 31 0 10 76 3 69 2.81e-17 77.0
MS.gene043620.t1 AT2G42830 50.704 71 35 0 6 76 14 84 3.72e-17 78.2
MS.gene043620.t1 AT3G57230 47.059 68 36 0 9 76 2 69 3.80e-17 75.9
MS.gene043620.t1 AT5G51870 53.731 67 31 0 10 76 3 69 3.89e-17 77.4
MS.gene043620.t1 AT3G61120 51.471 68 33 0 9 76 2 69 3.91e-17 78.2
MS.gene043620.t1 AT2G42830 50.704 71 35 0 6 76 14 84 4.25e-17 78.2
MS.gene043620.t1 AT3G58780 50.704 71 35 0 6 76 14 84 4.65e-17 78.2
MS.gene043620.t1 AT4G24540 51.471 68 33 0 9 76 2 69 5.07e-17 77.4
MS.gene043620.t1 AT3G58780 50.704 71 35 0 6 76 20 90 5.14e-17 78.2
MS.gene043620.t1 AT5G51870 53.731 67 31 0 10 76 3 69 6.91e-17 77.0
MS.gene043620.t1 AT5G51870 53.731 67 31 0 10 76 13 79 8.53e-17 77.0
MS.gene043620.t1 AT3G58780 50.704 71 35 0 6 76 14 84 8.57e-17 77.8
MS.gene043620.t1 AT4G37940 48.529 68 35 0 9 76 2 69 1.18e-16 76.6
MS.gene043620.t1 AT5G62165 49.254 67 34 0 10 76 3 69 1.21e-16 73.6
MS.gene043620.t1 AT4G37940 48.529 68 35 0 9 76 2 69 1.23e-16 76.3
MS.gene043620.t1 AT5G13790 43.011 93 44 1 9 101 2 85 1.26e-16 77.4
MS.gene043620.t1 AT3G57390 50.000 68 34 0 9 76 2 69 1.31e-16 76.3
MS.gene043620.t1 AT5G10140 50.725 69 33 1 9 76 2 70 1.35e-16 75.1
MS.gene043620.t1 AT4G37940 48.529 68 35 0 9 76 2 69 1.48e-16 75.1
MS.gene043620.t1 AT5G62165 49.254 67 34 0 10 76 3 69 1.53e-16 74.7
MS.gene043620.t1 AT5G62165 49.254 67 34 0 10 76 3 69 1.53e-16 74.7
MS.gene043620.t1 AT5G62165 49.254 67 34 0 10 76 3 69 1.53e-16 74.7
MS.gene043620.t1 AT5G62165 49.254 67 34 0 10 76 3 69 1.63e-16 74.3
MS.gene043620.t1 AT5G62165 49.254 67 34 0 10 76 3 69 1.63e-16 74.3
MS.gene043620.t1 AT5G62165 49.254 67 34 0 10 76 3 69 1.63e-16 74.3
MS.gene043620.t1 AT5G62165 49.254 67 34 0 10 76 3 69 1.63e-16 74.3
MS.gene043620.t1 AT5G62165 49.254 67 34 0 10 76 3 69 1.63e-16 74.3
MS.gene043620.t1 AT1G22130 37.143 105 65 1 9 112 2 106 1.72e-16 77.8
MS.gene043620.t1 AT3G57230 47.059 68 36 0 9 76 2 69 1.80e-16 76.3
MS.gene043620.t1 AT3G57230 47.059 68 36 0 9 76 2 69 1.80e-16 76.3
MS.gene043620.t1 AT4G11880 50.000 72 35 1 10 80 3 74 1.82e-16 75.1
MS.gene043620.t1 AT4G11880 50.000 72 35 1 10 80 3 74 1.82e-16 75.1
MS.gene043620.t1 AT5G13790 51.471 68 33 0 9 76 2 69 1.91e-16 76.6
MS.gene043620.t1 AT5G10140 50.725 69 33 1 9 76 2 70 1.97e-16 75.1
MS.gene043620.t1 AT5G10140 50.725 69 33 1 9 76 2 70 2.16e-16 75.1
MS.gene043620.t1 AT1G77980 38.095 105 64 1 9 112 2 106 2.17e-16 77.4
MS.gene043620.t1 AT5G10140 50.725 69 33 1 9 76 2 70 2.21e-16 75.1
MS.gene043620.t1 AT5G15800 29.583 240 128 9 9 224 2 224 2.46e-16 76.3
MS.gene043620.t1 AT3G57390 50.000 68 34 0 9 76 2 69 3.01e-16 75.9
MS.gene043620.t1 AT1G17310 53.165 79 35 1 8 86 47 123 4.00e-16 75.1
MS.gene043620.t1 AT4G11880 50.000 72 35 1 10 80 3 74 4.15e-16 75.1
MS.gene043620.t1 AT4G11880 50.000 72 35 1 10 80 3 74 4.15e-16 75.1
MS.gene043620.t1 AT5G51860 52.239 67 32 0 10 76 3 69 4.25e-16 74.7
MS.gene043620.t1 AT1G69120 40.659 91 51 1 9 99 2 89 5.06e-16 75.1
MS.gene043620.t1 AT5G51860 52.239 67 32 0 10 76 3 69 5.10e-16 74.3
MS.gene043620.t1 AT1G17310 53.165 79 35 1 8 86 58 134 5.15e-16 74.7
MS.gene043620.t1 AT1G77950 46.053 76 39 2 9 83 2 76 5.44e-16 75.1
MS.gene043620.t1 AT1G77950 46.053 76 39 2 9 83 2 76 5.44e-16 75.1
MS.gene043620.t1 AT1G77950 46.053 76 39 2 9 83 2 76 5.44e-16 75.1
MS.gene043620.t1 AT1G77950 46.053 76 39 2 9 83 2 76 5.44e-16 75.1
MS.gene043620.t1 AT5G62165 49.254 67 34 0 10 76 3 69 6.03e-16 74.3
MS.gene043620.t1 AT5G62165 49.254 67 34 0 10 76 3 69 6.03e-16 74.3
MS.gene043620.t1 AT5G62165 49.254 67 34 0 10 76 3 69 6.03e-16 74.3
MS.gene043620.t1 AT5G62165 49.254 67 34 0 10 76 3 69 6.04e-16 73.9
MS.gene043620.t1 AT5G62165 49.254 67 34 0 10 76 3 69 6.04e-16 73.9
MS.gene043620.t1 AT2G22630 47.059 68 36 0 9 76 2 69 6.21e-16 74.7
MS.gene043620.t1 AT2G22630 47.059 68 36 0 9 76 2 69 6.21e-16 74.7
MS.gene043620.t1 AT5G60910 49.296 71 33 1 9 79 2 69 7.58e-16 74.7
MS.gene043620.t1 AT1G26310 47.826 69 35 1 9 76 2 70 1.01e-15 74.3
MS.gene043620.t1 AT1G69120 40.659 91 51 1 9 99 2 89 1.06e-15 74.3
MS.gene043620.t1 AT5G15800 29.741 232 125 8 9 216 2 219 1.29e-15 74.3
MS.gene043620.t1 AT3G30260 46.377 69 36 1 9 76 2 70 1.46e-15 73.9
MS.gene043620.t1 AT3G54340 47.143 70 35 1 9 76 2 71 1.74e-15 73.6
MS.gene043620.t1 AT5G20240 47.143 70 35 1 9 76 2 71 4.87e-15 70.5
MS.gene043620.t1 AT2G14210 46.377 69 36 1 9 76 2 70 4.94e-15 72.4
MS.gene043620.t1 AT2G22540 50.000 68 29 1 9 76 2 64 5.38e-15 72.0
MS.gene043620.t1 AT2G14210 46.377 69 36 1 9 76 2 70 5.95e-15 72.0
MS.gene043620.t1 AT5G20240 47.143 70 35 1 9 76 2 71 7.23e-15 71.2
MS.gene043620.t1 AT1G28450 25.714 175 124 4 5 173 4 178 8.75e-15 70.5
MS.gene043620.t1 AT5G23260 43.299 97 47 3 2 90 9 105 9.23e-15 72.0
MS.gene043620.t1 AT5G23260 43.299 97 47 3 2 90 9 105 1.05e-14 72.0
MS.gene043620.t1 AT5G65050 46.377 69 36 1 9 76 2 70 1.43e-14 69.7
MS.gene043620.t1 AT3G02310 47.826 69 35 1 9 76 2 70 1.71e-14 70.1
MS.gene043620.t1 AT5G23260 44.318 88 43 2 9 90 2 89 2.06e-14 70.9
MS.gene043620.t1 AT5G23260 44.318 88 43 2 9 90 2 89 2.10e-14 70.5
MS.gene043620.t1 AT3G58780 52.459 61 29 0 6 66 14 74 2.30e-14 70.5
MS.gene043620.t1 AT1G24260 29.482 251 135 10 9 234 2 235 2.56e-14 70.5
MS.gene043620.t1 AT3G58780 52.459 61 29 0 6 66 14 74 2.73e-14 70.9
MS.gene043620.t1 AT5G65050 46.377 69 36 1 9 76 2 70 2.92e-14 69.3
MS.gene043620.t1 AT5G65050 46.377 69 36 1 9 76 2 70 3.06e-14 69.3
MS.gene043620.t1 AT5G65050 46.377 69 36 1 9 76 2 70 3.32e-14 68.9
MS.gene043620.t1 AT2G03710 53.571 56 26 0 9 64 2 57 3.68e-14 68.9
MS.gene043620.t1 AT1G24260 41.237 97 54 1 9 105 2 95 4.39e-14 69.7
MS.gene043620.t1 AT5G65060 46.377 69 36 1 9 76 2 70 4.80e-14 68.6
MS.gene043620.t1 AT3G02310 47.826 69 35 1 9 76 2 70 4.84e-14 69.7
MS.gene043620.t1 AT5G65060 46.377 69 36 1 9 76 2 70 5.33e-14 68.6
MS.gene043620.t1 AT5G65060 46.377 69 36 1 9 76 2 70 6.68e-14 68.6
MS.gene043620.t1 AT1G47760 34.483 116 61 3 9 123 2 103 7.79e-14 68.2
MS.gene043620.t1 AT1G24260 46.377 69 36 1 9 76 2 70 8.30e-14 68.9
MS.gene043620.t1 AT2G03710 47.143 70 35 2 9 76 2 71 1.05e-13 68.9
MS.gene043620.t1 AT2G03710 47.143 70 35 2 9 76 2 71 1.05e-13 68.9
MS.gene043620.t1 AT1G71692 44.286 70 38 1 9 77 2 71 1.79e-13 67.4
MS.gene043620.t1 AT5G65070 42.029 69 39 1 9 76 2 70 2.50e-13 65.9
MS.gene043620.t1 AT5G65070 42.029 69 39 1 9 76 2 70 5.24e-13 66.2
MS.gene043620.t1 AT5G65070 42.029 69 39 1 9 76 2 70 1.00e-12 65.9
MS.gene043620.t1 AT5G65070 42.029 69 39 1 9 76 2 70 1.02e-12 65.5
MS.gene043620.t1 AT1G18750 26.733 202 124 7 9 188 2 201 2.91e-12 65.9
MS.gene043620.t1 AT1G18750 26.733 202 124 7 9 188 2 201 3.30e-12 65.5
MS.gene043620.t1 AT2G03060 29.379 177 96 9 9 164 2 170 4.29e-12 65.5
MS.gene043620.t1 AT2G03060 29.379 177 96 9 9 164 2 170 4.29e-12 65.5
MS.gene043620.t1 AT2G03060 29.379 177 96 9 9 164 2 170 4.29e-12 65.5
MS.gene043620.t1 AT2G03060 29.379 177 96 9 9 164 2 170 4.56e-12 65.1
MS.gene043620.t1 AT5G65070 47.368 57 30 0 9 65 2 58 5.43e-12 63.9
MS.gene043620.t1 AT1G18750 38.961 77 44 2 9 83 2 77 5.66e-12 65.1
MS.gene043620.t1 AT1G69540 33.636 110 65 3 9 117 2 104 9.23e-12 64.3
MS.gene043620.t1 AT1G69540 33.636 110 65 3 9 117 2 104 1.02e-11 64.3
MS.gene043620.t1 AT1G46408 36.134 119 67 4 10 119 5 123 1.65e-11 62.8
MS.gene043620.t1 AT5G65080 38.961 77 46 1 1 76 1 77 1.95e-11 61.6
MS.gene043620.t1 AT4G37435 40.278 72 42 1 9 79 2 73 2.03e-11 61.2
MS.gene043620.t1 AT2G26320 40.000 70 40 1 9 76 18 87 2.69e-11 59.3
MS.gene043620.t1 AT5G65080 43.548 62 35 0 1 62 1 62 5.03e-11 60.5
MS.gene043620.t1 AT5G27130 40.741 81 44 2 6 82 10 90 9.54e-11 60.8

Find 67 sgRNAs with CRISPR-Local

Find 80 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGACGGCCGGGACTCAATTT+TGG 0.224208 3.2:+45187264 MS.gene043620:CDS
GAATTGTTTCCGAGAAAATA+TGG 0.264974 3.2:-45187419 None:intergenic
TTGGTTTGGCTTCAACAATA+TGG 0.281947 3.2:+45187535 MS.gene043620:CDS
ATCTGAGCTTGTGGAGGATT+TGG 0.315191 3.2:-45187470 None:intergenic
TGGTGGGTTGGTCCCATTGA+TGG 0.319959 3.2:+45187284 MS.gene043620:CDS
ATTGCATGGTACCATTGTTT+TGG 0.337688 3.2:-45187127 None:intergenic
TTGTTGATCATCATGTTGAT+AGG 0.343214 3.2:+45187363 MS.gene043620:CDS
ATGTTGCAACCTCATTGGTT+TGG 0.406166 3.2:+45187521 MS.gene043620:CDS
GTCCCATTGATGGGATGAAT+CGG 0.407918 3.2:+45187294 MS.gene043620:CDS
ACCCTATGTTGCAACCTCAT+TGG 0.412021 3.2:+45187516 MS.gene043620:CDS
TGGTTTGGCTTCAACAATAT+GGG 0.414863 3.2:+45187536 MS.gene043620:CDS
TGTTGATAGGCTTGTAATCC+AGG 0.417213 3.2:+45187376 MS.gene043620:CDS
GGTGGGTTGGTCCCATTGAT+GGG 0.419749 3.2:+45187285 MS.gene043620:CDS
TCTTCTCGATGTCCAGTAGC+TGG 0.437748 3.2:-45187211 None:intergenic
TCTATGACCGTATCAACATT+GGG 0.442152 3.2:-45187080 None:intergenic
CTTCTTGAATAATTCAAGTT+GGG 0.442228 3.2:-45187318 None:intergenic
TGAATTATTCAAGAAGGCTC+TGG 0.442548 3.2:+45187325 MS.gene043620:CDS
GGGCTCGGATCAAAAGAATC+TGG 0.442784 3.2:-45187582 None:intergenic
GGCCCGATTCATCCCATCAA+TGG 0.457427 3.2:-45187297 None:intergenic
GTGGAGGATTTGGTTGATGA+TGG 0.460225 3.2:-45187460 None:intergenic
TCCCGGCCGTCTTGCATAAG+TGG 0.466134 3.2:-45187253 None:intergenic
AGCCACTTATGCAAGACGGC+CGG 0.492369 3.2:+45187251 MS.gene043620:CDS
GCTCGCGCACGTTGGCGCTA+CGG 0.493165 3.2:-45187163 None:intergenic
ATGATGGAGAGGCATGTTAG+AGG 0.501643 3.2:-45187444 None:intergenic
ATCTATGACCGTATCAACAT+TGG 0.506195 3.2:-45187081 None:intergenic
GCCCGATTCATCCCATCAAT+GGG 0.506203 3.2:-45187296 None:intergenic
ACCAATGAGGTTGCAACATA+GGG 0.507520 3.2:-45187517 None:intergenic
GACTCAGATCAACCAGCTAC+TGG 0.508380 3.2:+45187199 MS.gene043620:CDS
AGTATTAAGCTCGCGCACGT+TGG 0.512264 3.2:-45187171 None:intergenic
CCTTCTTGAATAATTCAAGT+TGG 0.516494 3.2:-45187319 None:intergenic
GCCACTTATGCAAGACGGCC+GGG 0.523008 3.2:+45187252 MS.gene043620:CDS
GGGTTCTGATAAAATTGTGC+TGG 0.525402 3.2:-45187497 None:intergenic
ACAGAGGGTGCAAAGCTCAC+TGG 0.525840 3.2:-45186997 None:intergenic
AACCAATGAGGTTGCAACAT+AGG 0.525962 3.2:-45187518 None:intergenic
TCCCATTGATGGGATGAATC+GGG 0.533101 3.2:+45187295 MS.gene043620:CDS
GCTGGAAGCATCTGAGCTTG+TGG 0.533277 3.2:-45187479 None:intergenic
CCAACTTGAATTATTCAAGA+AGG 0.535705 3.2:+45187319 MS.gene043620:CDS
TGGCCACCCCAATGTTGATA+CGG 0.542985 3.2:+45187073 MS.gene043620:CDS
AACGAAAATACCTTCTCTCC+AGG 0.551818 3.2:-45187050 None:intergenic
CTTTCTCGAAGCGCCGTAGT+GGG 0.553366 3.2:+45186961 MS.gene043620:CDS
AACCCACCAAAATTGAGTCC+CGG 0.560638 3.2:-45187270 None:intergenic
TCATAGATCGTTATCTATCT+CGG 0.561253 3.2:+45187096 MS.gene043620:CDS
GTTTCCGAGAAAATATGGAA+TGG 0.569047 3.2:-45187414 None:intergenic
CTTCAACCATGTCAAGTGAA+AGG 0.570139 3.2:+45186874 None:intergenic
ACTTTCTCGAAGCGCCGTAG+TGG 0.571963 3.2:+45186960 MS.gene043620:CDS
AAATATGGAATGGTTTGAGT+AGG 0.576195 3.2:-45187404 None:intergenic
GGTTTGGCTTCAACAATATG+GGG 0.578983 3.2:+45187537 MS.gene043620:CDS
AGTGAGCTTTGCACCCTCTG+TGG 0.587031 3.2:+45186999 MS.gene043620:CDS
AGCAACATCTGCACCACAGA+GGG 0.595144 3.2:-45187012 None:intergenic
TGGTTTGAGTAGGAGCACCC+TGG 0.605264 3.2:-45187394 None:intergenic
CTTTCTTGAAGAGCCCACTA+CGG 0.610979 3.2:-45186974 None:intergenic
GGAAGCATCTGAGCTTGTGG+AGG 0.624119 3.2:-45187476 None:intergenic
CGGATCCCACCCCAAAACAA+TGG 0.631700 3.2:+45187116 MS.gene043620:CDS
CTCGGATCAAAAGAATCTGG+AGG 0.633945 3.2:-45187579 None:intergenic
GTTGATAGGCTTGTAATCCA+GGG 0.636489 3.2:+45187377 MS.gene043620:CDS
TGGTACCATGCAATTCATTG+AGG 0.638950 3.2:+45187136 MS.gene043620:CDS
GTGAGCCTCAATGAATTGCA+TGG 0.640763 3.2:-45187141 None:intergenic
GTTTGGCTTCAACAATATGG+GGG 0.642093 3.2:+45187538 MS.gene043620:CDS
GGATTTGGTTGATGATGGAG+AGG 0.642684 3.2:-45187455 None:intergenic
TTGTTGAAGCCAAACCAATG+AGG 0.650877 3.2:-45187530 None:intergenic
TTTGGCTTCAACAATATGGG+GGG 0.656547 3.2:+45187539 MS.gene043620:CDS
GCTGAGCCACTTATGCAAGA+CGG 0.665583 3.2:+45187247 MS.gene043620:CDS
TGACCGTATCAACATTGGGG+TGG 0.665619 3.2:-45187076 None:intergenic
TCGGATCAAAAGAATCTGGA+GGG 0.668832 3.2:-45187578 None:intergenic
TCAAGTGAAAGGAAAAGCCG+AGG 0.686269 3.2:+45186885 MS.gene043620:CDS
CTATGACCGTATCAACATTG+GGG 0.709949 3.2:-45187079 None:intergenic
GAGCAACATCTGCACCACAG+AGG 0.729838 3.2:-45187013 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTCATCTCAATCTTT+TGG - chr3.2:45186914-45186933 None:intergenic 20.0%
!! CTTCTTGAATAATTCAAGTT+GGG - chr3.2:45187321-45187340 None:intergenic 25.0%
AAATATGGAATGGTTTGAGT+AGG - chr3.2:45187407-45187426 None:intergenic 30.0%
CCAACTTGAATTATTCAAGA+AGG + chr3.2:45187319-45187338 MS.gene043620:CDS 30.0%
CCTTCTTGAATAATTCAAGT+TGG - chr3.2:45187322-45187341 None:intergenic 30.0%
GAATTGTTTCCGAGAAAATA+TGG - chr3.2:45187422-45187441 None:intergenic 30.0%
TCATAGATCGTTATCTATCT+CGG + chr3.2:45187096-45187115 MS.gene043620:CDS 30.0%
TTGTTGATCATCATGTTGAT+AGG + chr3.2:45187363-45187382 MS.gene043620:CDS 30.0%
! CAAACCATTCCATATTTTCT+CGG + chr3.2:45187410-45187429 MS.gene043620:CDS 30.0%
ATCTATGACCGTATCAACAT+TGG - chr3.2:45187084-45187103 None:intergenic 35.0%
GTTTCCGAGAAAATATGGAA+TGG - chr3.2:45187417-45187436 None:intergenic 35.0%
TCTATGACCGTATCAACATT+GGG - chr3.2:45187083-45187102 None:intergenic 35.0%
TGAATTATTCAAGAAGGCTC+TGG + chr3.2:45187325-45187344 MS.gene043620:CDS 35.0%
! ATTGCATGGTACCATTGTTT+TGG - chr3.2:45187130-45187149 None:intergenic 35.0%
! TGGTTTGGCTTCAACAATAT+GGG + chr3.2:45187536-45187555 MS.gene043620:CDS 35.0%
! TTGCATGGTACCATTGTTTT+GGG - chr3.2:45187129-45187148 None:intergenic 35.0%
!! TTGGTTTGGCTTCAACAATA+TGG + chr3.2:45187535-45187554 MS.gene043620:CDS 35.0%
AACCAATGAGGTTGCAACAT+AGG - chr3.2:45187521-45187540 None:intergenic 40.0%
AACGAAAATACCTTCTCTCC+AGG - chr3.2:45187053-45187072 None:intergenic 40.0%
ACCAATGAGGTTGCAACATA+GGG - chr3.2:45187520-45187539 None:intergenic 40.0%
CTATGACCGTATCAACATTG+GGG - chr3.2:45187082-45187101 None:intergenic 40.0%
TGGTACCATGCAATTCATTG+AGG + chr3.2:45187136-45187155 MS.gene043620:CDS 40.0%
TTGTTGAAGCCAAACCAATG+AGG - chr3.2:45187533-45187552 None:intergenic 40.0%
! ATGTTGCAACCTCATTGGTT+TGG + chr3.2:45187521-45187540 MS.gene043620:CDS 40.0%
! GGGTTCTGATAAAATTGTGC+TGG - chr3.2:45187500-45187519 None:intergenic 40.0%
! GGTTTGGCTTCAACAATATG+GGG + chr3.2:45187537-45187556 MS.gene043620:CDS 40.0%
! GTTGATAGGCTTGTAATCCA+GGG + chr3.2:45187377-45187396 MS.gene043620:CDS 40.0%
! GTTTGGCTTCAACAATATGG+GGG + chr3.2:45187538-45187557 MS.gene043620:CDS 40.0%
! TGTTGATAGGCTTGTAATCC+AGG + chr3.2:45187376-45187395 MS.gene043620:CDS 40.0%
! TTTGGCTTCAACAATATGGG+GGG + chr3.2:45187539-45187558 MS.gene043620:CDS 40.0%
!! TGCATGGTACCATTGTTTTG+GGG - chr3.2:45187128-45187147 None:intergenic 40.0%
!!! GGAGAGAAGGTATTTTCGTT+TGG + chr3.2:45187053-45187072 MS.gene043620:CDS 40.0%
AACCCACCAAAATTGAGTCC+CGG - chr3.2:45187273-45187292 None:intergenic 45.0%
ACCCTATGTTGCAACCTCAT+TGG + chr3.2:45187516-45187535 MS.gene043620:CDS 45.0%
ATCTGAGCTTGTGGAGGATT+TGG - chr3.2:45187473-45187492 None:intergenic 45.0%
CTTTCTTGAAGAGCCCACTA+CGG - chr3.2:45186977-45186996 None:intergenic 45.0%
GTCCCATTGATGGGATGAAT+CGG + chr3.2:45187294-45187313 MS.gene043620:CDS 45.0%
GTGAGCCTCAATGAATTGCA+TGG - chr3.2:45187144-45187163 None:intergenic 45.0%
TCAAGTGAAAGGAAAAGCCG+AGG + chr3.2:45186885-45186904 MS.gene043620:CDS 45.0%
TCCCATTGATGGGATGAATC+GGG + chr3.2:45187295-45187314 MS.gene043620:CDS 45.0%
! ATGATGGAGAGGCATGTTAG+AGG - chr3.2:45187447-45187466 None:intergenic 45.0%
! TCTCAATCTTTTGGCGACCT+CGG - chr3.2:45186905-45186924 None:intergenic 45.0%
! TGTTTTCTCACCTGGAGAGA+AGG + chr3.2:45187040-45187059 MS.gene043620:CDS 45.0%
!! GGATTTGGTTGATGATGGAG+AGG - chr3.2:45187458-45187477 None:intergenic 45.0%
!! GTGGAGGATTTGGTTGATGA+TGG - chr3.2:45187463-45187482 None:intergenic 45.0%
!!! ATGGTACCATTGTTTTGGGG+TGG - chr3.2:45187125-45187144 None:intergenic 45.0%
!!! TGGTACCATTGTTTTGGGGT+GGG - chr3.2:45187124-45187143 None:intergenic 45.0%
AGCAACATCTGCACCACAGA+GGG - chr3.2:45187015-45187034 None:intergenic 50.0%
AGTATTAAGCTCGCGCACGT+TGG - chr3.2:45187174-45187193 None:intergenic 50.0%
GACTCAGATCAACCAGCTAC+TGG + chr3.2:45187199-45187218 MS.gene043620:CDS 50.0%
GCCCGATTCATCCCATCAAT+GGG - chr3.2:45187299-45187318 None:intergenic 50.0%
GCTGAGCCACTTATGCAAGA+CGG + chr3.2:45187247-45187266 MS.gene043620:CDS 50.0%
TCTTCTCGATGTCCAGTAGC+TGG - chr3.2:45187214-45187233 None:intergenic 50.0%
TGACCGTATCAACATTGGGG+TGG - chr3.2:45187079-45187098 None:intergenic 50.0%
TGGCCACCCCAATGTTGATA+CGG + chr3.2:45187073-45187092 MS.gene043620:CDS 50.0%
TTCAACAATATGGGGGGAGG+AGG + chr3.2:45187545-45187564 MS.gene043620:CDS 50.0%
!! GCTCTCGTTGTTTTCTCACC+TGG + chr3.2:45187032-45187051 MS.gene043620:CDS 50.0%
!! GGGACTCAATTTTGGTGGGT+TGG + chr3.2:45187272-45187291 MS.gene043620:CDS 50.0%
AACAATATGGGGGGAGGAGG+TGG + chr3.2:45187548-45187567 MS.gene043620:CDS 55.0%
AGCCACTTATGCAAGACGGC+CGG + chr3.2:45187251-45187270 MS.gene043620:CDS 55.0%
AGTGAGCTTTGCACCCTCTG+TGG + chr3.2:45186999-45187018 MS.gene043620:CDS 55.0%
CGGATCCCACCCCAAAACAA+TGG + chr3.2:45187116-45187135 MS.gene043620:CDS 55.0%
GAGCAACATCTGCACCACAG+AGG - chr3.2:45187016-45187035 None:intergenic 55.0%
GGCCCGATTCATCCCATCAA+TGG - chr3.2:45187300-45187319 None:intergenic 55.0%
GGCTTCAACAATATGGGGGG+AGG + chr3.2:45187542-45187561 MS.gene043620:CDS 55.0%
! ACAGAGGGTGCAAAGCTCAC+TGG - chr3.2:45187000-45187019 None:intergenic 55.0%
! AGACGGCCGGGACTCAATTT+TGG + chr3.2:45187264-45187283 MS.gene043620:CDS 55.0%
!! ACTTTCTCGAAGCGCCGTAG+TGG + chr3.2:45186960-45186979 MS.gene043620:CDS 55.0%
!! CTTTCTCGAAGCGCCGTAGT+GGG + chr3.2:45186961-45186980 MS.gene043620:CDS 55.0%
!! GCTGGAAGCATCTGAGCTTG+TGG - chr3.2:45187482-45187501 None:intergenic 55.0%
!! GGAAGCATCTGAGCTTGTGG+AGG - chr3.2:45187479-45187498 None:intergenic 55.0%
!! GGCCGGGACTCAATTTTGGT+GGG + chr3.2:45187268-45187287 MS.gene043620:CDS 55.0%
!! GGTGGGTTGGTCCCATTGAT+GGG + chr3.2:45187285-45187304 MS.gene043620:CDS 55.0%
!! TGGTGGGTTGGTCCCATTGA+TGG + chr3.2:45187284-45187303 MS.gene043620:CDS 55.0%
!! TGGTTTGAGTAGGAGCACCC+TGG - chr3.2:45187397-45187416 None:intergenic 55.0%
ATGGGGGGAGGAGGTGGATA+TGG + chr3.2:45187554-45187573 MS.gene043620:CDS 60.0%
GCCACTTATGCAAGACGGCC+GGG + chr3.2:45187252-45187271 MS.gene043620:CDS 60.0%
TCCCGGCCGTCTTGCATAAG+TGG - chr3.2:45187256-45187275 None:intergenic 60.0%
! CGGCCGGGACTCAATTTTGG+TGG + chr3.2:45187267-45187286 MS.gene043620:CDS 60.0%
GCTCGCGCACGTTGGCGCTA+CGG - chr3.2:45187166-45187185 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr3.2 gene 45186882 45187595 45186882 ID=MS.gene043620
chr3.2 mRNA 45186882 45187595 45186882 ID=MS.gene043620.t1;Parent=MS.gene043620
chr3.2 exon 45186882 45187595 45186882 ID=MS.gene043620.t1.exon1;Parent=MS.gene043620.t1
chr3.2 CDS 45186882 45187595 45186882 ID=cds.MS.gene043620.t1;Parent=MS.gene043620.t1
Gene Sequence

>MS.gene043620

ATGTCAAGTGAAAGGAAAAGCCGAGGTCGCCAAAAGATTGAGATGAAAAAAATGAGCAACGAGAGCAACTTGCAAGTGACTTTCTCGAAGCGCCGTAGTGGGCTCTTCAAGAAAGCCAGTGAGCTTTGCACCCTCTGTGGTGCAGATGTTGCTCTCGTTGTTTTCTCACCTGGAGAGAAGGTATTTTCGTTTGGCCACCCCAATGTTGATACGGTCATAGATCGTTATCTATCTCGGATCCCACCCCAAAACAATGGTACCATGCAATTCATTGAGGCTCACCGTAGCGCCAACGTGCGCGAGCTTAATACTCAGCTGACTCAGATCAACCAGCTACTGGACATCGAGAAGAAACGTGCTGAAGAGCTGAGCCACTTATGCAAGACGGCCGGGACTCAATTTTGGTGGGTTGGTCCCATTGATGGGATGAATCGGGCCCAACTTGAATTATTCAAGAAGGCTCTGGATGAGCTTAAGAAAATTGTTGATCATCATGTTGATAGGCTTGTAATCCAGGGTGCTCCTACTCAAACCATTCCATATTTTCTCGGAAACAATTCATCCTCTAACATGCCTCTCCATCATCAACCAAATCCTCCACAAGCTCAGATGCTTCCAGCACAATTTTATCAGAACCCTATGTTGCAACCTCATTGGTTTGGCTTCAACAATATGGGGGGAGGAGGTGGATATGGACCCTCCAGATTCTTTTGA
Protein sequence

>MS.gene043620.t1

MSSERKSRGRQKIEMKKMSNESNLQVTFSKRRSGLFKKASELCTLCGADVALVVFSPGEKVFSFGHPNVDTVIDRYLSRIPPQNNGTMQFIEAHRSANVRELNTQLTQINQLLDIEKKRAEELSHLCKTAGTQFWWVGPIDGMNRAQLELFKKALDELKKIVDHHVDRLVIQGAPTQTIPYFLGNNSSSNMPLHHQPNPPQAQMLPAQFYQNPMLQPHWFGFNNMGGGGGYGPSRFF