Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044325.t1 | XP_003601496.2 | 95.4 | 395 | 18 | 0 | 1 | 395 | 161 | 555 | 3.30E-213 | 750.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044325.t1 | Q8GUM4 | 44.4 | 401 | 204 | 8 | 1 | 395 | 161 | 548 | 1.7e-69 | 264.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044325.t1 | G7J850 | 95.4 | 395 | 18 | 0 | 1 | 395 | 161 | 555 | 2.4e-213 | 750.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene55433 | MS.gene044325 | PPI |
| MS.gene044325 | MS.gene074163 | PPI |
| MS.gene044325 | MS.gene47071 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044325.t1 | MTR_3g082330 | 97.722 | 395 | 9 | 0 | 1 | 395 | 161 | 555 | 0.0 | 790 |
| MS.gene044325.t1 | MTR_3g082410 | 97.468 | 395 | 10 | 0 | 1 | 395 | 161 | 555 | 0.0 | 786 |
| MS.gene044325.t1 | MTR_7g031900 | 45.263 | 380 | 193 | 4 | 1 | 376 | 162 | 530 | 8.15e-106 | 323 |
| MS.gene044325.t1 | MTR_6g022160 | 44.032 | 377 | 200 | 4 | 1 | 375 | 83 | 450 | 4.74e-101 | 309 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044325.t1 | AT4G12680 | 65.152 | 396 | 137 | 1 | 1 | 395 | 161 | 556 | 0.0 | 541 |
| MS.gene044325.t1 | AT5G40640 | 42.932 | 382 | 197 | 5 | 1 | 375 | 161 | 528 | 2.93e-96 | 299 |
| MS.gene044325.t1 | AT3G27390 | 43.392 | 401 | 208 | 8 | 1 | 395 | 161 | 548 | 1.14e-95 | 298 |
| MS.gene044325.t1 | AT3G27390 | 43.392 | 401 | 208 | 8 | 1 | 395 | 161 | 548 | 1.14e-95 | 298 |
| MS.gene044325.t1 | AT4G37030 | 36.029 | 408 | 246 | 6 | 1 | 394 | 162 | 568 | 3.12e-87 | 275 |
Find 83 sgRNAs with CRISPR-Local
Find 145 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTGGCCTTTGGCTGTTCT+AGG | 0.194949 | 3.4:+77785082 | MS.gene044325:CDS |
| CTTCTAACATTGTCATTAGA+TGG | 0.238446 | 3.4:-77786423 | None:intergenic |
| TGCCATCATCCTTTGGCCTT+TGG | 0.252931 | 3.4:+77785072 | MS.gene044325:CDS |
| ATGTTGCTTGTTGGTGATTC+TGG | 0.273564 | 3.4:+77784898 | MS.gene044325:CDS |
| CTGGTCTTGCCATCATCCTT+TGG | 0.286827 | 3.4:+77785065 | MS.gene044325:CDS |
| ATGGGACACATTCAGTTTCT+AGG | 0.299355 | 3.4:-77785039 | None:intergenic |
| AGAGTGTTTGAGTGGTTTAT+TGG | 0.302946 | 3.4:+77786273 | MS.gene044325:CDS |
| GAAGAGACTATTAGAAGATT+TGG | 0.305017 | 3.4:+77784997 | MS.gene044325:CDS |
| AGCCCTTACATGCTGTTTAG+AGG | 0.321033 | 3.4:+77784971 | MS.gene044325:CDS |
| ATTTCATTGCTACAGGTTGC+AGG | 0.349552 | 3.4:+77786688 | MS.gene044325:intron |
| TCATACTTCTCGATTGTTGT+AGG | 0.371721 | 3.4:-77785825 | None:intergenic |
| TAATCACATCAATTGCTATA+TGG | 0.373356 | 3.4:+77784945 | MS.gene044325:CDS |
| CATCCTCTAAACAGCATGTA+AGG | 0.382964 | 3.4:-77784974 | None:intergenic |
| ACTGAATGTGTCCCATTTGC+TGG | 0.394958 | 3.4:+77785046 | MS.gene044325:CDS |
| CGGTGGAGTCGTTGTCCATC+AGG | 0.398197 | 3.4:+77785150 | MS.gene044325:CDS |
| TTCAAGTCGTGTGAGGTAAA+CGG | 0.411920 | 3.4:+77785967 | MS.gene044325:CDS |
| AGAAGATTTGGTTGGAAGAA+GGG | 0.428122 | 3.4:+77785009 | MS.gene044325:CDS |
| ACAACTTACTTGATATCAAA+TGG | 0.428287 | 3.4:-77784375 | None:intergenic |
| CATACTTCTCGATTGTTGTA+GGG | 0.430578 | 3.4:-77785824 | None:intergenic |
| ACTGTTACCATGTTGCTTGT+TGG | 0.438575 | 3.4:+77784889 | MS.gene044325:CDS |
| AAACGATATACCAGAGGATT+GGG | 0.440225 | 3.4:+77786386 | MS.gene044325:CDS |
| GCTTGTTGGTGATTCTGGTT+GGG | 0.442030 | 3.4:+77784903 | MS.gene044325:CDS |
| GCCTTCTTTAGCTGAAGCAC+TGG | 0.445716 | 3.4:-77786798 | None:intergenic |
| AAAATCAAATTCAGATGGAT+TGG | 0.449748 | 3.4:+77786119 | MS.gene044325:CDS |
| TGGATAGCACCTGGGAAGGC+AGG | 0.452467 | 3.4:-77785389 | None:intergenic |
| AGACTATTAGAAGATTTGGT+TGG | 0.453800 | 3.4:+77785001 | MS.gene044325:CDS |
| GGACAACGACTCCACCGTAT+AGG | 0.455943 | 3.4:-77785144 | None:intergenic |
| TAGAAGATTTGGTTGGAAGA+AGG | 0.457323 | 3.4:+77785008 | MS.gene044325:CDS |
| TGAAACCACAGATACAATAT+AGG | 0.458596 | 3.4:-77785320 | None:intergenic |
| CACTCAAACACTCTATCCTT+TGG | 0.461695 | 3.4:-77786264 | None:intergenic |
| TGCTTGTTGGTGATTCTGGT+TGG | 0.464031 | 3.4:+77784902 | MS.gene044325:CDS |
| AGTTGCAAGCTATAATTAGA+AGG | 0.464334 | 3.4:+77786451 | MS.gene044325:CDS |
| GACCATCACGGAGGACTATC+CGG | 0.472810 | 3.4:-77785990 | None:intergenic |
| AAAACGATATACCAGAGGAT+TGG | 0.477424 | 3.4:+77786385 | MS.gene044325:CDS |
| ATGATGGCAAGACCAGCAAA+TGG | 0.497676 | 3.4:-77785058 | None:intergenic |
| TAAGCATCAAATTACCAGCT+TGG | 0.499295 | 3.4:+77786067 | MS.gene044325:CDS |
| TTCTAACATTGTCATTAGAT+GGG | 0.505182 | 3.4:-77786422 | None:intergenic |
| GTGATTAAAACCACATCAAA+GGG | 0.505544 | 3.4:-77784929 | None:intergenic |
| GATAAGTGTAAAGGAAATTG+AGG | 0.510825 | 3.4:+77786014 | MS.gene044325:CDS |
| GAAGATTTGGTTGGAAGAAG+GGG | 0.515868 | 3.4:+77785010 | MS.gene044325:CDS |
| CTTACATGCTGTTTAGAGGA+TGG | 0.520118 | 3.4:+77784975 | MS.gene044325:CDS |
| TCAGCAAAATCAAATTCAGA+TGG | 0.520927 | 3.4:+77786114 | MS.gene044325:CDS |
| TCAGCAATATAAACCTGTGC+AGG | 0.522657 | 3.4:+77785858 | MS.gene044325:CDS |
| GTAGGAGGACTCACTGAAGA+TGG | 0.524821 | 3.4:+77785291 | MS.gene044325:intron |
| TGCTCTTTCATGATCAGTAA+AGG | 0.529067 | 3.4:-77786297 | None:intergenic |
| TAGGAGGACTCACTGAAGAT+GGG | 0.535422 | 3.4:+77785292 | MS.gene044325:intron |
| GAGAAGGATCCTGCCTTCCC+AGG | 0.536600 | 3.4:+77785380 | MS.gene044325:CDS |
| TGTGATTAAAACCACATCAA+AGG | 0.539186 | 3.4:-77784930 | None:intergenic |
| AGCCAAAGGCCAAAGGATGA+TGG | 0.539527 | 3.4:-77785074 | None:intergenic |
| ATAGAACTGACAAGGATGAA+TGG | 0.540507 | 3.4:+77786240 | MS.gene044325:CDS |
| CATGTTACCATCACCTGCAC+AGG | 0.541861 | 3.4:-77785871 | None:intergenic |
| AAAAGTTGGCATCCGAGACA+TGG | 0.543213 | 3.4:-77786723 | None:intergenic |
| TTTCATTGCTACAGGTTGCA+GGG | 0.544530 | 3.4:+77786689 | MS.gene044325:intron |
| GGATCGTGTCTTCCATGTCT+CGG | 0.545681 | 3.4:+77786711 | MS.gene044325:CDS |
| GCCAGTGCTTCAGCTAAAGA+AGG | 0.549583 | 3.4:+77786797 | MS.gene044325:CDS |
| GTTTGCCTATATTGTATCTG+TGG | 0.551430 | 3.4:+77785315 | MS.gene044325:CDS |
| TGATGGCAAGACCAGCAAAT+GGG | 0.553432 | 3.4:-77785057 | None:intergenic |
| GGTTGGGATGCCCTTTGATG+TGG | 0.558727 | 3.4:+77784919 | MS.gene044325:CDS |
| AACAATCGAGAAGTATGAAG+TGG | 0.559930 | 3.4:+77785830 | MS.gene044325:CDS |
| CCAGTGCTATCCCAATCCTC+TGG | 0.561004 | 3.4:-77786396 | None:intergenic |
| TGATGGTCTGATAAGTGTAA+AGG | 0.563206 | 3.4:+77786005 | MS.gene044325:CDS |
| GCAGCTTAAGAATCTTGAGC+TGG | 0.568575 | 3.4:+77786317 | MS.gene044325:CDS |
| GATTTACTCTACTTGAGAGA+AGG | 0.571412 | 3.4:+77785364 | MS.gene044325:CDS |
| ACACATTCAGTTTCTAGGAA+AGG | 0.573379 | 3.4:-77785034 | None:intergenic |
| CACTGTAGCAAGGACCAAGC+TGG | 0.573786 | 3.4:-77786081 | None:intergenic |
| TTGAAAGAACTTGTTATGAG+AGG | 0.588914 | 3.4:+77786360 | MS.gene044325:CDS |
| CCAGAGGATTGGGATAGCAC+TGG | 0.589157 | 3.4:+77786396 | MS.gene044325:CDS |
| AAATTGGATAGCACCTGGGA+AGG | 0.591081 | 3.4:-77785393 | None:intergenic |
| TTCATTGCTACAGGTTGCAG+GGG | 0.591621 | 3.4:+77786690 | MS.gene044325:intron |
| CAAAGGATAGAGTGTTTGAG+TGG | 0.594544 | 3.4:+77786265 | MS.gene044325:CDS |
| ATACAAAGCATGCACTTGAG+AGG | 0.607375 | 3.4:+77785734 | MS.gene044325:CDS |
| GGCCGGATAGTCCTCCGTGA+TGG | 0.609151 | 3.4:+77785988 | MS.gene044325:CDS |
| ATCCTCTAAACAGCATGTAA+GGG | 0.609256 | 3.4:-77784973 | None:intergenic |
| GACAAGGATGAATGGACCAA+AGG | 0.624889 | 3.4:+77786248 | MS.gene044325:CDS |
| CTAGAACAGCCAAAGGCCAA+AGG | 0.631343 | 3.4:-77785081 | None:intergenic |
| AGGAGGACTCACTGAAGATG+GGG | 0.638782 | 3.4:+77785293 | MS.gene044325:intron |
| AGTCGTGTGAGGTAAACGGC+CGG | 0.645750 | 3.4:+77785971 | MS.gene044325:CDS |
| AGAATCACCAACAAGCAACA+TGG | 0.653350 | 3.4:-77784896 | None:intergenic |
| CTGATGATATAGAACTGACA+AGG | 0.654288 | 3.4:+77786232 | MS.gene044325:CDS |
| AGTTAGAAGACACTGTAGCA+AGG | 0.669269 | 3.4:-77786091 | None:intergenic |
| ACAGCACCTAGAACAGCCAA+AGG | 0.672365 | 3.4:-77785088 | None:intergenic |
| TTACACTTATCAGACCATCA+CGG | 0.719169 | 3.4:-77786002 | None:intergenic |
| CACTTATCAGACCATCACGG+AGG | 0.752339 | 3.4:-77785999 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGATCATAATTTGAAAAAT+AGG | + | chr3.4:77785773-77785792 | MS.gene044325:CDS | 15.0% |
| !! | ATCAAATAACAAAAGAAAAG+TGG | + | chr3.4:77784663-77784682 | MS.gene044325:intron | 20.0% |
| !! | CAAACTATCAAACATATATT+TGG | - | chr3.4:77784406-77784425 | None:intergenic | 20.0% |
| !! | GATACTGAATTTAATTCAAT+CGG | - | chr3.4:77784803-77784822 | None:intergenic | 20.0% |
| !! | GTATCTTACAATTCATAATA+AGG | - | chr3.4:77784533-77784552 | None:intergenic | 20.0% |
| !!! | GTTTTAAGAGATTTTATTGT+AGG | + | chr3.4:77785273-77785292 | MS.gene044325:intron | 20.0% |
| ! | AAAATCAAATTCAGATGGAT+TGG | + | chr3.4:77786119-77786138 | MS.gene044325:CDS | 25.0% |
| ! | AAACAAACTTACGTAATATG+AGG | - | chr3.4:77785647-77785666 | None:intergenic | 25.0% |
| ! | AAAGTAGTTACACTAAGTTT+AGG | + | chr3.4:77784718-77784737 | MS.gene044325:intron | 25.0% |
| ! | AAATAAACACACTAGAGATT+TGG | + | chr3.4:77784776-77784795 | MS.gene044325:intron | 25.0% |
| ! | AATAACAAAAGAAAAGTGGT+TGG | + | chr3.4:77784667-77784686 | MS.gene044325:intron | 25.0% |
| ! | ACAACTTACTTGATATCAAA+TGG | - | chr3.4:77784378-77784397 | None:intergenic | 25.0% |
| ! | AGCATATTTACATATTCCAA+TGG | - | chr3.4:77786185-77786204 | None:intergenic | 25.0% |
| ! | CAATCTAACAAAGAAAACTA+TGG | - | chr3.4:77784867-77784886 | None:intergenic | 25.0% |
| ! | CTATCAAACATATATTTGGA+AGG | - | chr3.4:77784402-77784421 | None:intergenic | 25.0% |
| ! | GAGCTTCTTGTATATATATT+CGG | + | chr3.4:77785204-77785223 | MS.gene044325:intron | 25.0% |
| ! | GTATGAAAAAAGAAATGTTC+TGG | + | chr3.4:77784427-77784446 | MS.gene044325:intron | 25.0% |
| ! | TAATCACATCAATTGCTATA+TGG | + | chr3.4:77784945-77784964 | MS.gene044325:CDS | 25.0% |
| ! | TAGATTATCAAATCGTGATT+CGG | + | chr3.4:77784482-77784501 | MS.gene044325:intron | 25.0% |
| ! | TTCTAACATTGTCATTAGAT+GGG | - | chr3.4:77786425-77786444 | None:intergenic | 25.0% |
| !! | AGTATTTTTCTTAGCCTATA+CGG | + | chr3.4:77785130-77785149 | MS.gene044325:CDS | 25.0% |
| !! | TTAAGAGATTTTATTGTAGG+AGG | + | chr3.4:77785276-77785295 | MS.gene044325:intron | 25.0% |
| !!! | TTTGTATTTTTACGGTATAC+TGG | - | chr3.4:77785721-77785740 | None:intergenic | 25.0% |
| ACCAATAATAGATATAGCGT+TGG | + | chr3.4:77785599-77785618 | MS.gene044325:intron | 30.0% | |
| AGCAATTCATCAGAATGAAT+TGG | + | chr3.4:77784742-77784761 | MS.gene044325:intron | 30.0% | |
| AGCACAGTAAAAGAAAATGA+TGG | - | chr3.4:77785430-77785449 | None:intergenic | 30.0% | |
| AGTAAAAGAAAATGATGGCA+TGG | - | chr3.4:77785425-77785444 | None:intergenic | 30.0% | |
| AGTTGCAAGCTATAATTAGA+AGG | + | chr3.4:77786451-77786470 | MS.gene044325:CDS | 30.0% | |
| ATTTGGTATTTCATTGCTAC+AGG | + | chr3.4:77786681-77786700 | MS.gene044325:intron | 30.0% | |
| CTTCTAACATTGTCATTAGA+TGG | - | chr3.4:77786426-77786445 | None:intergenic | 30.0% | |
| GAAGAGACTATTAGAAGATT+TGG | + | chr3.4:77784997-77785016 | MS.gene044325:CDS | 30.0% | |
| GATAAGTGTAAAGGAAATTG+AGG | + | chr3.4:77786014-77786033 | MS.gene044325:CDS | 30.0% | |
| GCAATTCATCAGAATGAATT+GGG | + | chr3.4:77784743-77784762 | MS.gene044325:intron | 30.0% | |
| GTAGCAATGAAATACCAAAT+GGG | - | chr3.4:77786681-77786700 | None:intergenic | 30.0% | |
| GTGATTAAAACCACATCAAA+GGG | - | chr3.4:77784932-77784951 | None:intergenic | 30.0% | |
| TCAGCAAAATCAAATTCAGA+TGG | + | chr3.4:77786114-77786133 | MS.gene044325:CDS | 30.0% | |
| TCCAACGCTATATCTATTAT+TGG | - | chr3.4:77785603-77785622 | None:intergenic | 30.0% | |
| TGAAACCACAGATACAATAT+AGG | - | chr3.4:77785323-77785342 | None:intergenic | 30.0% | |
| TGTAGCAATGAAATACCAAA+TGG | - | chr3.4:77786682-77786701 | None:intergenic | 30.0% | |
| TGTGATTAAAACCACATCAA+AGG | - | chr3.4:77784933-77784952 | None:intergenic | 30.0% | |
| ! | AATAGATATAGCGTTGGAAA+GGG | + | chr3.4:77785605-77785624 | MS.gene044325:intron | 30.0% |
| ! | AGACTATTAGAAGATTTGGT+TGG | + | chr3.4:77785001-77785020 | MS.gene044325:CDS | 30.0% |
| ! | ATATCAAATGGCTTTTCTTG+AGG | - | chr3.4:77784366-77784385 | None:intergenic | 30.0% |
| ! | ATTGAGGAATGCATTTTCAA+AGG | + | chr3.4:77786030-77786049 | MS.gene044325:CDS | 30.0% |
| ! | CACTTTGTAATAGAGAGTAT+TGG | - | chr3.4:77785510-77785529 | None:intergenic | 30.0% |
| ! | TAATAGATATAGCGTTGGAA+AGG | + | chr3.4:77785604-77785623 | MS.gene044325:intron | 30.0% |
| ! | TATCAAATGGCTTTTCTTGA+GGG | - | chr3.4:77784365-77784384 | None:intergenic | 30.0% |
| !! | AATCGTTATTTTGCAGGTAT+GGG | + | chr3.4:77785936-77785955 | MS.gene044325:intron | 30.0% |
| !! | GAAAAGAATCGTTATTTTGC+AGG | + | chr3.4:77785930-77785949 | MS.gene044325:intron | 30.0% |
| !! | GTGCATGCTTTGTATTTTTA+CGG | - | chr3.4:77785729-77785748 | None:intergenic | 30.0% |
| !! | TTACGTAAGTTTGTTTTCGA+CGG | + | chr3.4:77785651-77785670 | MS.gene044325:intron | 30.0% |
| !! | TTGAAAGAACTTGTTATGAG+AGG | + | chr3.4:77786360-77786379 | MS.gene044325:CDS | 30.0% |
| AAAACGATATACCAGAGGAT+TGG | + | chr3.4:77786385-77786404 | MS.gene044325:CDS | 35.0% | |
| AAACGATATACCAGAGGATT+GGG | + | chr3.4:77786386-77786405 | MS.gene044325:CDS | 35.0% | |
| AAAGAAAATTGGATAGCACC+TGG | - | chr3.4:77785401-77785420 | None:intergenic | 35.0% | |
| AAGAAAATTGGATAGCACCT+GGG | - | chr3.4:77785400-77785419 | None:intergenic | 35.0% | |
| ATAGAACTGACAAGGATGAA+TGG | + | chr3.4:77786240-77786259 | MS.gene044325:CDS | 35.0% | |
| ATCCTCTAAACAGCATGTAA+GGG | - | chr3.4:77784976-77784995 | None:intergenic | 35.0% | |
| ATTACAAAGTGAAGTTCGTG+TGG | + | chr3.4:77785519-77785538 | MS.gene044325:intron | 35.0% | |
| ATTCCAATGGAATGAAAGCA+TGG | - | chr3.4:77786172-77786191 | None:intergenic | 35.0% | |
| CAATGAAATACCAAATGGGA+AGG | - | chr3.4:77786677-77786696 | None:intergenic | 35.0% | |
| CATACTTCTCGATTGTTGTA+GGG | - | chr3.4:77785827-77785846 | None:intergenic | 35.0% | |
| CTGATGATATAGAACTGACA+AGG | + | chr3.4:77786232-77786251 | MS.gene044325:CDS | 35.0% | |
| CTTGAGAGGAAAAAACTTGA+AGG | + | chr3.4:77785748-77785767 | MS.gene044325:CDS | 35.0% | |
| GATGGCATGGTAAAGAAAAT+TGG | - | chr3.4:77785412-77785431 | None:intergenic | 35.0% | |
| GATTTACTCTACTTGAGAGA+AGG | + | chr3.4:77785364-77785383 | MS.gene044325:CDS | 35.0% | |
| GTTTGCCTATATTGTATCTG+TGG | + | chr3.4:77785315-77785334 | MS.gene044325:CDS | 35.0% | |
| TAAGCATCAAATTACCAGCT+TGG | + | chr3.4:77786067-77786086 | MS.gene044325:CDS | 35.0% | |
| TAGCATATGCATCAAGAATG+TGG | - | chr3.4:77786642-77786661 | None:intergenic | 35.0% | |
| TCATACTTCTCGATTGTTGT+AGG | - | chr3.4:77785828-77785847 | None:intergenic | 35.0% | |
| TGATGGTCTGATAAGTGTAA+AGG | + | chr3.4:77786005-77786024 | MS.gene044325:CDS | 35.0% | |
| TGCTCTTTCATGATCAGTAA+AGG | - | chr3.4:77786300-77786319 | None:intergenic | 35.0% | |
| TTACAAAGTGAAGTTCGTGT+GGG | + | chr3.4:77785520-77785539 | MS.gene044325:intron | 35.0% | |
| TTACACTTATCAGACCATCA+CGG | - | chr3.4:77786005-77786024 | None:intergenic | 35.0% | |
| ! | AACAATCGAGAAGTATGAAG+TGG | + | chr3.4:77785830-77785849 | MS.gene044325:CDS | 35.0% |
| ! | ACACATTCAGTTTCTAGGAA+AGG | - | chr3.4:77785037-77785056 | None:intergenic | 35.0% |
| ! | AGAAGATTTGGTTGGAAGAA+GGG | + | chr3.4:77785009-77785028 | MS.gene044325:CDS | 35.0% |
| ! | AGAGTGTTTGAGTGGTTTAT+TGG | + | chr3.4:77786273-77786292 | MS.gene044325:CDS | 35.0% |
| ! | ATCAAATCGTGATTCGGATT+AGG | + | chr3.4:77784488-77784507 | MS.gene044325:intron | 35.0% |
| ! | ATTTTTCTTAGCCTATACGG+TGG | + | chr3.4:77785133-77785152 | MS.gene044325:CDS | 35.0% |
| ! | CAACTTTTCGACGAAAACTT+AGG | + | chr3.4:77786738-77786757 | MS.gene044325:CDS | 35.0% |
| ! | CTAAGTTTTCGTCGAAAAGT+TGG | - | chr3.4:77786740-77786759 | None:intergenic | 35.0% |
| ! | TAGAAGATTTGGTTGGAAGA+AGG | + | chr3.4:77785008-77785027 | MS.gene044325:CDS | 35.0% |
| !! | GAATCGTTATTTTGCAGGTA+TGG | + | chr3.4:77785935-77785954 | MS.gene044325:intron | 35.0% |
| AGAATCACCAACAAGCAACA+TGG | - | chr3.4:77784899-77784918 | None:intergenic | 40.0% | |
| AGGCAAAAACGATATACCAG+AGG | + | chr3.4:77786380-77786399 | MS.gene044325:CDS | 40.0% | |
| AGTTAGAAGACACTGTAGCA+AGG | - | chr3.4:77786094-77786113 | None:intergenic | 40.0% | |
| ATACAAAGCATGCACTTGAG+AGG | + | chr3.4:77785734-77785753 | MS.gene044325:CDS | 40.0% | |
| ATATAAACCTGTGCAGGTGA+TGG | + | chr3.4:77785864-77785883 | MS.gene044325:intron | 40.0% | |
| ATGCCATGCTTTCATTCCAT+TGG | + | chr3.4:77786166-77786185 | MS.gene044325:intron | 40.0% | |
| ATGGGACACATTCAGTTTCT+AGG | - | chr3.4:77785042-77785061 | None:intergenic | 40.0% | |
| ATTTCATTGCTACAGGTTGC+AGG | + | chr3.4:77786688-77786707 | MS.gene044325:intron | 40.0% | |
| CACTCAAACACTCTATCCTT+TGG | - | chr3.4:77786267-77786286 | None:intergenic | 40.0% | |
| CATCCTCTAAACAGCATGTA+AGG | - | chr3.4:77784977-77784996 | None:intergenic | 40.0% | |
| TCAGCAATATAAACCTGTGC+AGG | + | chr3.4:77785858-77785877 | MS.gene044325:CDS | 40.0% | |
| TCGCACTTTAACTAACCTGA+TGG | - | chr3.4:77785168-77785187 | None:intergenic | 40.0% | |
| TGTTTCAACTCCTTCCCATT+TGG | + | chr3.4:77786664-77786683 | MS.gene044325:intron | 40.0% | |
| TTCAAGTCGTGTGAGGTAAA+CGG | + | chr3.4:77785967-77785986 | MS.gene044325:CDS | 40.0% | |
| TTTCATTGCTACAGGTTGCA+GGG | + | chr3.4:77786689-77786708 | MS.gene044325:intron | 40.0% | |
| ! | ACTGTTACCATGTTGCTTGT+TGG | + | chr3.4:77784889-77784908 | MS.gene044325:CDS | 40.0% |
| ! | ATTTTTACGGTATACTGGCC+TGG | - | chr3.4:77785716-77785735 | None:intergenic | 40.0% |
| ! | CAAAGGATAGAGTGTTTGAG+TGG | + | chr3.4:77786265-77786284 | MS.gene044325:CDS | 40.0% |
| ! | CTTACATGCTGTTTAGAGGA+TGG | + | chr3.4:77784975-77784994 | MS.gene044325:CDS | 40.0% |
| ! | GAAGATTTGGTTGGAAGAAG+GGG | + | chr3.4:77785010-77785029 | MS.gene044325:CDS | 40.0% |
| !! | ATGTTGCTTGTTGGTGATTC+TGG | + | chr3.4:77784898-77784917 | MS.gene044325:CDS | 40.0% |
| !! | TTATTTTGCAGGTATGGGAC+TGG | + | chr3.4:77785941-77785960 | MS.gene044325:intron | 40.0% |
| AAAAGTTGGCATCCGAGACA+TGG | - | chr3.4:77786726-77786745 | None:intergenic | 45.0% | |
| AAATTGGATAGCACCTGGGA+AGG | - | chr3.4:77785396-77785415 | None:intergenic | 45.0% | |
| AAGTAGTACTTGTGACAGCC+AGG | + | chr3.4:77785695-77785714 | MS.gene044325:intron | 45.0% | |
| ACTGAATGTGTCCCATTTGC+TGG | + | chr3.4:77785046-77785065 | MS.gene044325:CDS | 45.0% | |
| ATGATGGCAAGACCAGCAAA+TGG | - | chr3.4:77785061-77785080 | None:intergenic | 45.0% | |
| GACAAGGATGAATGGACCAA+AGG | + | chr3.4:77786248-77786267 | MS.gene044325:CDS | 45.0% | |
| GCAGCTTAAGAATCTTGAGC+TGG | + | chr3.4:77786317-77786336 | MS.gene044325:CDS | 45.0% | |
| TAGGAGGACTCACTGAAGAT+GGG | + | chr3.4:77785292-77785311 | MS.gene044325:intron | 45.0% | |
| TGATGGCAAGACCAGCAAAT+GGG | - | chr3.4:77785060-77785079 | None:intergenic | 45.0% | |
| TTCATTGCTACAGGTTGCAG+GGG | + | chr3.4:77786690-77786709 | MS.gene044325:intron | 45.0% | |
| ! | AGCCCTTACATGCTGTTTAG+AGG | + | chr3.4:77784971-77784990 | MS.gene044325:CDS | 45.0% |
| ! | TTGTTTTCGACGGCGAACAT+TGG | + | chr3.4:77785661-77785680 | MS.gene044325:intron | 45.0% |
| !! | GCTTGTTGGTGATTCTGGTT+GGG | + | chr3.4:77784903-77784922 | MS.gene044325:CDS | 45.0% |
| !! | TGCTTGTTGGTGATTCTGGT+TGG | + | chr3.4:77784902-77784921 | MS.gene044325:CDS | 45.0% |
| !!! | CTGGTTTTTCAAGTCGTGTG+AGG | + | chr3.4:77785960-77785979 | MS.gene044325:CDS | 45.0% |
| ACAGCACCTAGAACAGCCAA+AGG | - | chr3.4:77785091-77785110 | None:intergenic | 50.0% | |
| AGCCAAAGGCCAAAGGATGA+TGG | - | chr3.4:77785077-77785096 | None:intergenic | 50.0% | |
| AGGAGGACTCACTGAAGATG+GGG | + | chr3.4:77785293-77785312 | MS.gene044325:intron | 50.0% | |
| CACTTATCAGACCATCACGG+AGG | - | chr3.4:77786002-77786021 | None:intergenic | 50.0% | |
| CATGTTACCATCACCTGCAC+AGG | - | chr3.4:77785874-77785893 | None:intergenic | 50.0% | |
| CTAGAACAGCCAAAGGCCAA+AGG | - | chr3.4:77785084-77785103 | None:intergenic | 50.0% | |
| GCCAGTGCTTCAGCTAAAGA+AGG | + | chr3.4:77786797-77786816 | MS.gene044325:CDS | 50.0% | |
| GCCTTCTTTAGCTGAAGCAC+TGG | - | chr3.4:77786801-77786820 | None:intergenic | 50.0% | |
| GGATCGTGTCTTCCATGTCT+CGG | + | chr3.4:77786711-77786730 | MS.gene044325:CDS | 50.0% | |
| GTAGGAGGACTCACTGAAGA+TGG | + | chr3.4:77785291-77785310 | MS.gene044325:intron | 50.0% | |
| ! | CTTTGGCCTTTGGCTGTTCT+AGG | + | chr3.4:77785082-77785101 | MS.gene044325:CDS | 50.0% |
| ! | TGCCATCATCCTTTGGCCTT+TGG | + | chr3.4:77785072-77785091 | MS.gene044325:CDS | 50.0% |
| !! | CTGGTCTTGCCATCATCCTT+TGG | + | chr3.4:77785065-77785084 | MS.gene044325:CDS | 50.0% |
| AGTCGTGTGAGGTAAACGGC+CGG | + | chr3.4:77785971-77785990 | MS.gene044325:CDS | 55.0% | |
| CACTGTAGCAAGGACCAAGC+TGG | - | chr3.4:77786084-77786103 | None:intergenic | 55.0% | |
| CCAGAGGATTGGGATAGCAC+TGG | + | chr3.4:77786396-77786415 | MS.gene044325:CDS | 55.0% | |
| CCAGTGCTATCCCAATCCTC+TGG | - | chr3.4:77786399-77786418 | None:intergenic | 55.0% | |
| GACCATCACGGAGGACTATC+CGG | - | chr3.4:77785993-77786012 | None:intergenic | 55.0% | |
| GGACAACGACTCCACCGTAT+AGG | - | chr3.4:77785147-77785166 | None:intergenic | 55.0% | |
| GGTTGGGATGCCCTTTGATG+TGG | + | chr3.4:77784919-77784938 | MS.gene044325:CDS | 55.0% | |
| CGGTGGAGTCGTTGTCCATC+AGG | + | chr3.4:77785150-77785169 | MS.gene044325:CDS | 60.0% | |
| GAGAAGGATCCTGCCTTCCC+AGG | + | chr3.4:77785380-77785399 | MS.gene044325:CDS | 60.0% | |
| TGGATAGCACCTGGGAAGGC+AGG | - | chr3.4:77785392-77785411 | None:intergenic | 60.0% | |
| GGCCGGATAGTCCTCCGTGA+TGG | + | chr3.4:77785988-77786007 | MS.gene044325:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 77784336 | 77786841 | 77784336 | ID=MS.gene044325 |
| chr3.4 | mRNA | 77784336 | 77786841 | 77784336 | ID=MS.gene044325.t1;Parent=MS.gene044325 |
| chr3.4 | exon | 77784336 | 77784388 | 77784336 | ID=MS.gene044325.t1.exon1;Parent=MS.gene044325.t1 |
| chr3.4 | CDS | 77784336 | 77784388 | 77784336 | ID=cds.MS.gene044325.t1;Parent=MS.gene044325.t1 |
| chr3.4 | exon | 77784883 | 77785171 | 77784883 | ID=MS.gene044325.t1.exon2;Parent=MS.gene044325.t1 |
| chr3.4 | CDS | 77784883 | 77785171 | 77784883 | ID=cds.MS.gene044325.t1;Parent=MS.gene044325.t1 |
| chr3.4 | exon | 77785295 | 77785401 | 77785295 | ID=MS.gene044325.t1.exon3;Parent=MS.gene044325.t1 |
| chr3.4 | CDS | 77785295 | 77785401 | 77785295 | ID=cds.MS.gene044325.t1;Parent=MS.gene044325.t1 |
| chr3.4 | exon | 77785717 | 77785879 | 77785717 | ID=MS.gene044325.t1.exon4;Parent=MS.gene044325.t1 |
| chr3.4 | CDS | 77785717 | 77785879 | 77785717 | ID=cds.MS.gene044325.t1;Parent=MS.gene044325.t1 |
| chr3.4 | exon | 77785952 | 77786147 | 77785952 | ID=MS.gene044325.t1.exon5;Parent=MS.gene044325.t1 |
| chr3.4 | CDS | 77785952 | 77786147 | 77785952 | ID=cds.MS.gene044325.t1;Parent=MS.gene044325.t1 |
| chr3.4 | exon | 77786232 | 77786472 | 77786232 | ID=MS.gene044325.t1.exon6;Parent=MS.gene044325.t1 |
| chr3.4 | CDS | 77786232 | 77786472 | 77786232 | ID=cds.MS.gene044325.t1;Parent=MS.gene044325.t1 |
| chr3.4 | exon | 77786703 | 77786841 | 77786703 | ID=MS.gene044325.t1.exon7;Parent=MS.gene044325.t1 |
| chr3.4 | CDS | 77786703 | 77786841 | 77786703 | ID=cds.MS.gene044325.t1;Parent=MS.gene044325.t1 |
| Gene Sequence |
| Protein sequence |
