AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene074163

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene074163.t1 MTR_6g022160 93.725 494 29 1 38 529 1 494 0.0 938
MS.gene074163.t1 MTR_7g031900 64.313 524 183 3 1 521 43 565 0.0 684
MS.gene074163.t1 MTR_3g082330 46.139 505 248 6 1 490 43 538 3.82e-144 431
MS.gene074163.t1 MTR_3g082410 45.833 504 251 4 1 490 43 538 9.77e-144 430
MS.gene074163.t1 MTR_6g022170 97.037 135 4 0 520 654 31 165 8.49e-93 284
MS.gene074163.t1 MTR_4g077787 55.738 122 49 2 521 637 30 151 1.62e-39 143
MS.gene074163.t1 MTR_4g111640 63.107 103 37 1 521 622 30 132 1.62e-39 143
MS.gene074163.t1 MTR_4g112310 62.195 82 31 0 541 622 1 82 8.35e-32 120
MS.gene074163.t1 MTR_4g078410 51.429 105 46 2 520 622 22 123 1.28e-28 113
MS.gene074163.t1 MTR_1g014120 51.515 99 45 2 526 622 29 126 1.33e-27 110
MS.gene074163.t1 MTR_2g101300 46.667 105 56 0 518 622 22 126 5.71e-27 108
MS.gene074163.t1 MTR_3g105930 50.505 99 46 2 526 622 31 128 5.93e-26 105
MS.gene074163.t1 MTR_8g463180 49.107 112 51 3 522 631 23 130 4.32e-24 103
MS.gene074163.t1 MTR_1g077790 41.176 102 58 1 522 621 28 129 1.14e-23 99.4
MS.gene074163.t1 MTR_2g079030 47.826 115 54 3 510 622 13 123 1.92e-23 105
MS.gene074163.t1 MTR_2g090580 42.593 108 57 2 522 627 26 130 4.50e-23 97.8
MS.gene074163.t1 MTR_8g086360 38.406 138 77 3 504 636 2 136 1.86e-21 92.8
MS.gene074163.t1 MTR_4g124280 46.078 102 52 2 523 622 25 125 4.16e-20 90.5
MS.gene074163.t1 MTR_4g081100 45.631 103 53 2 522 622 31 132 1.27e-19 88.6
MS.gene074163.t1 MTR_4g114870 43.564 101 54 2 523 621 191 290 1.62e-19 91.3
MS.gene074163.t1 MTR_4g114870 38.462 104 61 2 521 622 27 129 2.21e-15 79.0
MS.gene074163.t1 MTR_2g090575 43.636 110 56 3 522 629 24 129 1.62e-19 91.3
MS.gene074163.t1 MTR_2g083250 38.938 113 66 2 522 631 25 137 1.10e-18 86.7
MS.gene074163.t1 MTR_8g095020 41.667 108 56 4 523 628 25 127 7.20e-17 82.4
MS.gene074163.t1 MTR_7g090170 42.424 99 37 3 526 622 31 111 1.37e-16 77.8
MS.gene074163.t1 MTR_1g104800 38.235 102 58 2 523 622 25 123 2.39e-16 78.2
MS.gene074163.t1 MTR_5g006040 37.624 101 58 2 524 622 27 124 1.29e-15 75.9
MS.gene074163.t1 MTR_3g092170 42.857 98 51 2 524 619 26 120 1.29e-15 78.2
MS.gene074163.t1 MTR_8g094990 38.393 112 65 2 522 631 24 133 1.71e-15 77.8
MS.gene074163.t1 MTR_8g095013 41.176 102 56 2 522 621 24 123 1.91e-15 77.8
MS.gene074163.t1 MTR_3g099570 37.864 103 58 2 520 621 23 120 2.68e-14 72.0
MS.gene074163.t1 MTR_7g086100 32.520 123 76 2 502 622 5 122 4.80e-14 72.4
MS.gene074163.t1 MTR_0334s0010 34.951 103 64 2 520 621 25 125 9.76e-14 70.9
MS.gene074163.t1 MTR_2g088990 33.628 113 67 3 526 636 29 135 9.79e-14 71.6
MS.gene074163.t1 MTR_3g099580 36.893 103 59 2 520 621 23 120 9.99e-14 70.5
MS.gene074163.t1 MTR_1g090190 37.500 104 59 2 519 621 19 117 1.58e-13 69.7
MS.gene074163.t1 MTR_1g090420 33.333 105 66 2 519 621 24 126 2.88e-13 70.1
MS.gene074163.t1 MTR_8g099220 32.075 106 68 2 518 621 24 127 3.54e-13 67.4
MS.gene074163.t1 MTR_4g130800 39.640 111 61 4 520 626 26 134 4.56e-13 70.5
MS.gene074163.t1 MTR_3g099540 35.922 103 60 2 520 621 24 121 6.22e-13 66.6
MS.gene074163.t1 MTR_4g067200 34.653 101 61 3 525 621 30 129 6.79e-13 67.8
MS.gene074163.t1 MTR_4g066110 34.653 101 61 3 525 621 30 129 6.79e-13 67.8
MS.gene074163.t1 MTR_4g130780 35.484 124 70 6 510 627 14 133 2.90e-12 66.2
MS.gene074163.t1 MTR_4g130800 42.857 84 46 1 545 626 50 133 5.42e-12 67.0
MS.gene074163.t1 MTR_4g114830 35.000 100 62 2 526 622 32 131 6.89e-12 64.7
MS.gene074163.t1 MTR_6g080660 36.634 101 58 3 525 624 30 125 2.17e-11 64.3
MS.gene074163.t1 MTR_7g086090 33.913 115 66 4 510 622 16 122 2.27e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene074163.t1 AT5G40640 57.089 529 215 6 1 521 43 567 0.0 601
MS.gene074163.t1 AT3G27390 56.121 531 219 6 1 521 43 569 0.0 590
MS.gene074163.t1 AT3G27390 56.121 531 219 6 1 521 43 569 0.0 590
MS.gene074163.t1 AT4G12680 47.273 495 248 7 3 487 45 536 9.88e-139 417
MS.gene074163.t1 AT4G37030 37.232 513 303 7 1 496 43 553 4.39e-124 380
MS.gene074163.t1 AT5G14345 55.556 126 48 3 530 650 23 145 1.51e-40 145
MS.gene074163.t1 AT3G18590 60.000 105 41 1 519 622 23 127 1.51e-37 138
MS.gene074163.t1 AT1G48940 56.190 105 45 1 519 622 22 126 1.50e-36 135
MS.gene074163.t1 AT1G79800 52.475 101 48 0 522 622 33 133 1.02e-29 116
MS.gene074163.t1 AT2G25060 44.615 130 65 4 510 637 22 146 3.42e-26 106
MS.gene074163.t1 AT4G28365 44.444 117 60 2 522 636 28 141 5.39e-26 106
MS.gene074163.t1 AT3G20570 43.750 112 59 2 522 631 29 138 4.11e-24 100
MS.gene074163.t1 AT4G31840 42.063 126 67 4 510 632 16 138 2.79e-23 97.8
MS.gene074163.t1 AT4G32490 44.144 111 57 2 522 630 30 137 3.89e-23 98.6
MS.gene074163.t1 AT5G53870 43.220 118 61 3 522 637 29 142 9.77e-22 97.8
MS.gene074163.t1 AT4G30590 44.554 101 53 2 526 624 32 131 1.11e-21 93.6
MS.gene074163.t1 AT5G53870 43.220 118 61 3 522 637 29 142 1.33e-21 97.8
MS.gene074163.t1 AT1G64640 40.952 105 58 2 519 621 29 131 1.60e-21 93.2
MS.gene074163.t1 AT2G23990 46.364 110 53 4 526 632 31 137 1.19e-20 91.3
MS.gene074163.t1 AT5G57920 39.252 107 61 3 526 630 27 131 1.98e-19 87.0
MS.gene074163.t1 AT5G25090 40.404 99 56 2 526 622 30 127 4.66e-19 85.9
MS.gene074163.t1 AT5G57920 39.252 107 61 3 526 630 26 130 1.08e-18 84.7
MS.gene074163.t1 AT5G57920 39.252 107 61 3 526 630 59 163 1.19e-18 85.5
MS.gene074163.t1 AT4G27520 37.097 124 66 3 522 636 30 150 1.40e-18 88.2
MS.gene074163.t1 AT2G23990 39.535 129 53 5 526 632 31 156 5.71e-17 80.9
MS.gene074163.t1 AT5G26330 35.922 103 61 2 523 623 24 123 6.54e-15 73.9
MS.gene074163.t1 AT2G26720 35.577 104 61 2 521 622 27 126 6.80e-15 74.3
MS.gene074163.t1 AT3G60270 36.634 101 58 2 523 622 26 121 9.14e-15 73.6
MS.gene074163.t1 AT2G31050 38.462 104 58 2 521 622 27 126 2.67e-14 72.4
MS.gene074163.t1 AT2G32300 36.190 105 60 2 520 622 23 122 2.74e-14 73.9
MS.gene074163.t1 AT2G32300 36.190 105 60 2 520 622 53 152 3.98e-14 73.9
MS.gene074163.t1 AT3G17675 35.345 116 66 3 510 621 17 127 9.14e-14 68.9
MS.gene074163.t1 AT5G07475 38.835 103 57 3 520 621 27 124 2.40e-13 69.7
MS.gene074163.t1 AT3G60280 35.577 104 61 3 520 622 21 119 3.54e-13 69.7
MS.gene074163.t1 AT3G27200 37.000 100 56 4 525 622 28 122 2.09e-12 66.2

Find 125 sgRNAs with CRISPR-Local

Find 262 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGGAGTCCTCTTTCTTGTT+TGG 0.241603 6.1:+5718952 MS.gene074163:intron
CAGGCCTTGCTATCCTTCTA+TGG 0.261167 6.1:+5718735 MS.gene074163:CDS
CTTTCAAATTGTGTTTGTTT+TGG 0.261299 6.1:+5722145 MS.gene074163:CDS
GAGTTCAAGTTAAATCATTC+AGG 0.270749 6.1:+5722002 MS.gene074163:CDS
GGCTGGAGTTGTTGCCTATC+AGG 0.273543 6.1:+5718820 MS.gene074163:CDS
GATGTTCATTCTAAGTCTTC+TGG 0.288753 6.1:+5722101 MS.gene074163:CDS
TAATGATCAAAAGTGGATTA+AGG 0.298395 6.1:-5719925 None:intergenic
ACACTGATATCTACAATGTT+TGG 0.305248 6.1:+5721595 MS.gene074163:CDS
ACAATTTGAAAGACACAAAT+AGG 0.307755 6.1:-5722134 None:intergenic
GCTAGTTTGCGGTCGGATTC+CGG 0.312554 6.1:-5720061 None:intergenic
TACGAATGGAGTCACCAATT+TGG 0.316624 6.1:-5721635 None:intergenic
CAGCTGTCATACTTGGTCTT+TGG 0.329449 6.1:+5717661 MS.gene074163:CDS
GGAATTGTTGGAAGTATTGT+AGG 0.332832 6.1:+5717888 MS.gene074163:CDS
CCGGAGAATATTACGAAATC+AGG 0.336687 6.1:+5718439 MS.gene074163:CDS
TCCAACAAAAGGTTCCAAAT+TGG 0.342518 6.1:+5721621 MS.gene074163:CDS
AGTCATTAGTATTGGTTTGC+CGG 0.342709 6.1:+5719644 MS.gene074163:CDS
TTTGAAGTTGGTGACCTAAA+AGG 0.344252 6.1:+5721549 MS.gene074163:CDS
CCATACTTATTTCTCTGTAA+TGG 0.352662 6.1:+5718389 MS.gene074163:CDS
TGGTCGCGAAGGCCCTTTCT+TGG 0.363819 6.1:+5718691 MS.gene074163:CDS
TGCAGGCTACATTATATTCC+TGG 0.367253 6.1:+5718548 MS.gene074163:intron
CACTGATATCTACAATGTTT+GGG 0.372543 6.1:+5721596 MS.gene074163:CDS
CTATGGCCATTGGCTGTTGT+TGG 0.373411 6.1:+5718752 MS.gene074163:CDS
CGTTTGTTTCGTGACCTCAT+TGG 0.381664 6.1:+5718671 MS.gene074163:CDS
CCTCTTTCTTGTTTGGCCTT+CGG 0.384001 6.1:+5718959 MS.gene074163:CDS
CATCCTTTGAAAAGCATGTA+TGG 0.384520 6.1:-5718644 None:intergenic
ATATGCTTAATCATGACAAT+TGG 0.385784 6.1:+5717633 None:intergenic
TCTTCAATGGTGATCTAGAT+AGG 0.395079 6.1:+5720011 MS.gene074163:CDS
CTCTATTAAAGCCGATTCCT+CGG 0.399831 6.1:+5719695 MS.gene074163:CDS
TGCTATCCTTCTATGGCCAT+TGG 0.402911 6.1:+5718742 MS.gene074163:CDS
CAAGTATCTTTCTCGGTGCT+CGG 0.404844 6.1:+5718798 MS.gene074163:CDS
ATCTTTCTCGGTGCTCGGGC+TGG 0.405302 6.1:+5718803 MS.gene074163:CDS
ATTGTAGGTGGTGCAGCTTA+TGG 0.409722 6.1:+5717903 MS.gene074163:CDS
TTATTTCTGTGAAGGCTTCA+AGG 0.409868 6.1:+5720292 MS.gene074163:intron
TACTTCATCAGTGGTGCATC+AGG 0.411868 6.1:+5722032 MS.gene074163:CDS
GATTGTTAGAGTGATGATTC+AGG 0.415351 6.1:+5722079 MS.gene074163:CDS
GACTACAGATGTAAACAATT+AGG 0.416259 6.1:+5717798 MS.gene074163:intron
AAGGCAACTAATGATATAAT+CGG 0.423242 6.1:-5718611 None:intergenic
CCATTACAGAGAAATAAGTA+TGG 0.425303 6.1:-5718389 None:intergenic
AACTTGACGCATTGGCTAGA+AGG 0.428003 6.1:+5720086 MS.gene074163:CDS
GCTGTTGTAGCAGCAATTCT+CGG 0.428501 6.1:+5718572 MS.gene074163:CDS
GAGAGTAAAGTCATTAGTAT+TGG 0.428912 6.1:+5719636 MS.gene074163:CDS
GTAATAGCAAGTATCTTTCT+CGG 0.431510 6.1:+5718791 MS.gene074163:CDS
GACATACAAGAAGCCATGTT+TGG 0.437610 6.1:+5719609 MS.gene074163:CDS
TAGATATCAGTGTCATTAGA+AGG 0.442805 6.1:-5721585 None:intergenic
CAACAGCCAATGGCCATAGA+AGG 0.446607 6.1:-5718748 None:intergenic
TTGCGGTCGGATTCCGGAGG+AGG 0.451246 6.1:-5720055 None:intergenic
TGCAAGTTAGTCCTCTTCAA+TGG 0.456367 6.1:+5719998 MS.gene074163:CDS
ACACATATTGTCTCCAAGAA+AGG 0.461105 6.1:-5718704 None:intergenic
TATCAATATACCCGAGGAAT+CGG 0.463010 6.1:-5719706 None:intergenic
TTGGTGGTCCGTCTTGTCTC+AGG 0.469442 6.1:-5718416 None:intergenic
ATGTTTGGGCTTCCAACAAA+AGG 0.474081 6.1:+5721610 MS.gene074163:CDS
TCTATTAAAGCCGATTCCTC+GGG 0.475474 6.1:+5719696 MS.gene074163:CDS
AAGTATCTTTCTCGGTGCTC+GGG 0.475706 6.1:+5718799 MS.gene074163:CDS
AGACAAGACGGACCACCAAC+CGG 0.475822 6.1:+5718420 MS.gene074163:CDS
TCTAGCCAATGCGTCAAGTT+CGG 0.477905 6.1:-5720083 None:intergenic
CGTCAAGTTCGGCTAGTTTG+CGG 0.480808 6.1:-5720072 None:intergenic
TGATCTTTAATGATCAAAAG+TGG 0.480904 6.1:-5719932 None:intergenic
GGAAACTCAGCTGTCATACT+TGG 0.481115 6.1:+5717654 MS.gene074163:CDS
CATGTATGGAACTTTACATA+AGG 0.481598 6.1:-5718630 None:intergenic
CCTGATTTCGTAATATTCTC+CGG 0.491674 6.1:-5718439 None:intergenic
TATTCGTTAGAGAAATTGTA+CGG 0.491810 6.1:-5719240 None:intergenic
CGGAAGGATCTTGCTTTCCA+AGG 0.495581 6.1:+5719040 MS.gene074163:CDS
CCTAAGTACTCAAATTACAT+AGG 0.499801 6.1:-5722180 None:intergenic
AGCTGAGTTGAAACCATTTG+AGG 0.501739 6.1:+5719267 MS.gene074163:CDS
TTTACTCTCTTTGCCAAACA+TGG 0.503256 6.1:-5719622 None:intergenic
TGTAGATTTCAAGTACAAGA+AGG 0.511969 6.1:+5721896 MS.gene074163:intron
CTGTTGTAGCAGCAATTCTC+GGG 0.512445 6.1:+5718573 MS.gene074163:CDS
GCATCAGGACATTGTGAGAA+AGG 0.515708 6.1:+5722047 MS.gene074163:CDS
AAGGATTCAGTGATGGAAGT+TGG 0.518692 6.1:+5721915 MS.gene074163:CDS
CAAGGTTTCCGACATACAAA+AGG 0.519331 6.1:+5720332 MS.gene074163:CDS
AGGATAGCAAGGCCTGCAAA+AGG 0.529649 6.1:-5718728 None:intergenic
TCGTAATATTCTCCGGTTGG+TGG 0.530909 6.1:-5718432 None:intergenic
ATTTCGTAATATTCTCCGGT+TGG 0.531719 6.1:-5718435 None:intergenic
AGTTCAAGTTAAATCATTCA+GGG 0.532515 6.1:+5722003 MS.gene074163:CDS
GCTTCAACTGAATTTGAAGT+TGG 0.534144 6.1:+5721537 MS.gene074163:intron
CACATATTGTCTCCAAGAAA+GGG 0.540976 6.1:-5718703 None:intergenic
GCTTCAAAAGTAGCAAATAA+CGG 0.544105 6.1:-5717936 None:intergenic
GGAGAAACATTGGTTTCTCA+AGG 0.546761 6.1:+5719570 MS.gene074163:CDS
AGTTGGTGACCTAAAAGGTT+GGG 0.550095 6.1:+5721554 MS.gene074163:CDS
CTTCAATGGTGATCTAGATA+GGG 0.550587 6.1:+5720012 MS.gene074163:CDS
TAATGATATTCTTGATATGT+CGG 0.552548 6.1:+5719020 MS.gene074163:CDS
TCTTCATGTAGGAGAAACAT+TGG 0.555373 6.1:+5719560 MS.gene074163:CDS
CACATCACAAACTTTAGTAA+TGG 0.556025 6.1:-5717822 None:intergenic
CGGGAAATAGTCTTTGCTAA+GGG 0.557759 6.1:-5719220 None:intergenic
AAATCTTTCCGTGTCTGAAG+AGG 0.559024 6.1:+5719967 MS.gene074163:CDS
TTCAGTGATGGAAGTTGGCA+AGG 0.562087 6.1:+5721920 MS.gene074163:CDS
ACTAGCCGAACTTGACGCAT+TGG 0.565193 6.1:+5720078 MS.gene074163:CDS
AAGTTGGTGACCTAAAAGGT+TGG 0.565324 6.1:+5721553 MS.gene074163:CDS
AGCCATAAAATCAACAGCAC+TGG 0.565744 6.1:-5717858 None:intergenic
ACGGGAAATAGTCTTTGCTA+AGG 0.574299 6.1:-5719221 None:intergenic
ATTCGTTAGAGAAATTGTAC+GGG 0.577112 6.1:-5719239 None:intergenic
TTTGGTGCATACATACTACA+TGG 0.579461 6.1:+5717679 MS.gene074163:CDS
CGTGACCTCATTGGTCGCGA+AGG 0.581435 6.1:+5718680 MS.gene074163:CDS
TGAGTCGTGTAGTTATTGGA+TGG 0.583050 6.1:+5719522 MS.gene074163:intron
CCGAAGGCCAAACAAGAAAG+AGG 0.583138 6.1:-5718959 None:intergenic
GATATTCTTGATATGTCGGA+AGG 0.585528 6.1:+5719024 MS.gene074163:CDS
GAAGACATTTGATATTGTGA+AGG 0.589826 6.1:+5718347 MS.gene074163:CDS
TATCTAGATCACCATTGAAG+AGG 0.592362 6.1:-5720009 None:intergenic
GAGAAAAGATTGAAATATCA+CGG 0.592386 6.1:+5719161 MS.gene074163:CDS
TAAGGGCTTAGTTCTTGAGA+AGG 0.598574 6.1:-5719203 None:intergenic
TGAAGAGGACTAACTTGCAA+AGG 0.600847 6.1:-5719994 None:intergenic
GTACAAGAAGGATTCAGTGA+TGG 0.605927 6.1:+5721908 MS.gene074163:CDS
AAGTTCGGCTAGTTTGCGGT+CGG 0.606382 6.1:-5720068 None:intergenic
GAAGAGCTTGCTGATAAACA+TGG 0.607187 6.1:+5720385 MS.gene074163:CDS
AACGCGCCAACAACAGCCAA+TGG 0.613619 6.1:-5718758 None:intergenic
GGGACATTCTACTTCATCAG+TGG 0.616697 6.1:+5722023 MS.gene074163:CDS
GTATAACAAAATTTATCACA+AGG 0.619052 6.1:+5720314 MS.gene074163:CDS
GCTTGAAGAAGACAATAAGC+CGG 0.625908 6.1:-5719663 None:intergenic
ATGGATGACCTGAGACAAGA+CGG 0.626405 6.1:+5718408 MS.gene074163:CDS
ATTGCTGCTACAACAGCACC+AGG 0.626899 6.1:-5718566 None:intergenic
GTTATTGGATGGCTTGTGCA+AGG 0.631466 6.1:+5719533 MS.gene074163:intron
TGGATCCTTAGGATGGAACA+TGG 0.632406 6.1:+5718313 MS.gene074163:intron
TGCAAGGAATGTCTTCATGT+AGG 0.633729 6.1:+5719549 MS.gene074163:CDS
AACTACTTCAAACAGACCAA+AGG 0.634491 6.1:+5719883 MS.gene074163:CDS
ATGGCCATAGAAGGATAGCA+AGG 0.646850 6.1:-5718739 None:intergenic
AAGGTAGTCCTCTTCAGACA+CGG 0.649762 6.1:-5719975 None:intergenic
ATATCAGTGTCATTAGAAGG+TGG 0.661699 6.1:-5721582 None:intergenic
AAGTTGCGACAATGTACCGA+AGG 0.666224 6.1:-5718975 None:intergenic
CTTACTTATCAATATACCCG+AGG 0.670798 6.1:-5719712 None:intergenic
AGTTTGCGGTCGGATTCCGG+AGG 0.670991 6.1:-5720058 None:intergenic
ATTGTTGGAAGTATTGTAGG+TGG 0.684186 6.1:+5717891 MS.gene074163:CDS
GAAAGACACAAATAGGAACA+TGG 0.685028 6.1:-5722127 None:intergenic
AAGGGCCTTCGCGACCAATG+AGG 0.687378 6.1:-5718685 None:intergenic
CAAAACATACCATAAAACAG+TGG 0.698483 6.1:-5717989 None:intergenic
GGACATATTACTGTGTTGTG+AGG 0.740533 6.1:+5717700 MS.gene074163:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAATGTAAAAAATGAAAAT+CGG + chr6.1:5720806-5720825 MS.gene074163:intron 10.0%
!! TGATTAATGTTTAAAAAAAA+TGG + chr6.1:5720702-5720721 MS.gene074163:intron 10.0%
!!! AACAATAATATCTTATTTTA+GGG - chr6.1:5718850-5718869 None:intergenic 10.0%
!!! ATAAATTGAAATTTTTCATA+TGG - chr6.1:5721155-5721174 None:intergenic 10.0%
!! TTTATACAATAAAAATGACA+CGG + chr6.1:5721737-5721756 MS.gene074163:intron 15.0%
!!! AAAATCATTTGCTTTTAAAA+TGG + chr6.1:5719811-5719830 MS.gene074163:intron 15.0%
!!! ATTTATTTGACTTAGTTAAT+AGG - chr6.1:5721200-5721219 None:intergenic 15.0%
!!! GAACAATAATATCTTATTTT+AGG - chr6.1:5718851-5718870 None:intergenic 15.0%
!!! GTAAAATACTGAAATTTTAT+TGG - chr6.1:5720162-5720181 None:intergenic 15.0%
!!! TTTATTTGACTTAGTTAATA+GGG - chr6.1:5721199-5721218 None:intergenic 15.0%
!!! TTTTCATCAATATAATTTCA+AGG + chr6.1:5721679-5721698 MS.gene074163:intron 15.0%
!! ATATTGATGAAAATAAAGAG+AGG - chr6.1:5721672-5721691 None:intergenic 20.0%
!! ATTACGTAATGAATATAACA+AGG - chr6.1:5718201-5718220 None:intergenic 20.0%
!! GTATAACAAAATTTATCACA+AGG + chr6.1:5720314-5720333 MS.gene074163:CDS 20.0%
!! TAAAATTTCACAGAAAATCA+AGG - chr6.1:5718503-5718522 None:intergenic 20.0%
!! TAATGATATTCTTGATATGT+CGG + chr6.1:5719020-5719039 MS.gene074163:CDS 20.0%
!! TATTGATGAAAATAAAGAGA+GGG - chr6.1:5721671-5721690 None:intergenic 20.0%
!! TTTCATATGGAAAATTTAGA+GGG - chr6.1:5721142-5721161 None:intergenic 20.0%
!!! AGGGTAAAAAATTTAACTTT+TGG + chr6.1:5720031-5720050 MS.gene074163:CDS 20.0%
!!! ATTAAGTTGTTTATCCAAAT+AGG - chr6.1:5719773-5719792 None:intergenic 20.0%
!!! TTAAGTTGTTTATCCAAATA+GGG - chr6.1:5719772-5719791 None:intergenic 20.0%
!!! TTTTCATATGGAAAATTTAG+AGG - chr6.1:5721143-5721162 None:intergenic 20.0%
! AAATATCAAACACAAGTCAA+GGG - chr6.1:5719122-5719141 None:intergenic 25.0%
! AAATCAGATAACTCACATTT+CGG + chr6.1:5719370-5719389 MS.gene074163:intron 25.0%
! AAATCATTCAACAAGAGTAA+TGG + chr6.1:5720460-5720479 MS.gene074163:intron 25.0%
! AAGAAGAAATTTGCAACTTA+TGG - chr6.1:5721116-5721135 None:intergenic 25.0%
! AAGGCAACTAATGATATAAT+CGG - chr6.1:5718614-5718633 None:intergenic 25.0%
! AATCATAATGCAATGTAATC+AGG + chr6.1:5720862-5720881 MS.gene074163:intron 25.0%
! ACAATTTGAAAGACACAAAT+AGG - chr6.1:5722137-5722156 None:intergenic 25.0%
! ACTTGTGTTTGATATTTGAT+AGG + chr6.1:5719125-5719144 MS.gene074163:intron 25.0%
! ATTGATGAAAATAAAGAGAG+GGG - chr6.1:5721670-5721689 None:intergenic 25.0%
! CAAAACAACATGTATTACAA+AGG - chr6.1:5719080-5719099 None:intergenic 25.0%
! CAGCGATATAAACATAATAA+CGG - chr6.1:5720184-5720203 None:intergenic 25.0%
! GAGAAAAGATTGAAATATCA+CGG + chr6.1:5719161-5719180 MS.gene074163:CDS 25.0%
! GTGAAGAGATAAAAAAAATC+AGG - chr6.1:5720969-5720988 None:intergenic 25.0%
! TATTCGTTAGAGAAATTGTA+CGG - chr6.1:5719243-5719262 None:intergenic 25.0%
! TCAGTTAAATTGAGAATGAT+GGG - chr6.1:5720906-5720925 None:intergenic 25.0%
! TGATCTTTAATGATCAAAAG+TGG - chr6.1:5719935-5719954 None:intergenic 25.0%
! TTAACCACATATTTGAACTA+TGG + chr6.1:5718220-5718239 MS.gene074163:intron 25.0%
!! AGTTCAAGTTAAATCATTCA+GGG + chr6.1:5722003-5722022 MS.gene074163:CDS 25.0%
!! ATTGTTTTCATGTGTGTTAT+GGG - chr6.1:5721429-5721448 None:intergenic 25.0%
!! CAAAATTTTCCACTGTTTTA+TGG + chr6.1:5717980-5717999 MS.gene074163:CDS 25.0%
!! CTTTCAAATTGTGTTTGTTT+TGG + chr6.1:5722145-5722164 MS.gene074163:CDS 25.0%
!! GATTTTAAACGTCATAAACT+AGG - chr6.1:5718137-5718156 None:intergenic 25.0%
!! TTGATAACAAATTTCGACAA+CGG - chr6.1:5718258-5718277 None:intergenic 25.0%
!!! TAATGATCAAAAGTGGATTA+AGG - chr6.1:5719928-5719947 None:intergenic 25.0%
!!! TGTAAAAAAAGTACCTCAAA+TGG - chr6.1:5719283-5719302 None:intergenic 25.0%
!!! TTGATTTTATGGCTAGTTTT+GGG + chr6.1:5717867-5717886 MS.gene074163:CDS 25.0%
!!! TTTTGTACTTATTTCTGTGA+AGG + chr6.1:5720284-5720303 MS.gene074163:intron 25.0%
AAAATAAAGAGAGGGGTTTA+GGG - chr6.1:5721663-5721682 None:intergenic 30.0%
AATTTGCAACTTATGGATCA+TGG - chr6.1:5721109-5721128 None:intergenic 30.0%
ACACTGATATCTACAATGTT+TGG + chr6.1:5721595-5721614 MS.gene074163:CDS 30.0%
ATTCGTTAGAGAAATTGTAC+GGG - chr6.1:5719242-5719261 None:intergenic 30.0%
ATTTGCAACTTATGGATCAT+GGG - chr6.1:5721108-5721127 None:intergenic 30.0%
CAAAACATACCATAAAACAG+TGG - chr6.1:5717992-5718011 None:intergenic 30.0%
CAAATATCAAACACAAGTCA+AGG - chr6.1:5719123-5719142 None:intergenic 30.0%
CACATCACAAACTTTAGTAA+TGG - chr6.1:5717825-5717844 None:intergenic 30.0%
CACTGATATCTACAATGTTT+GGG + chr6.1:5721596-5721615 MS.gene074163:CDS 30.0%
CATGTATGGAACTTTACATA+AGG - chr6.1:5718633-5718652 None:intergenic 30.0%
CATTCAAAAAACTTCTCCTT+TGG - chr6.1:5719902-5719921 None:intergenic 30.0%
CCATTACAGAGAAATAAGTA+TGG - chr6.1:5718392-5718411 None:intergenic 30.0%
CCATTGTTTGAGAAAAATGT+TGG - chr6.1:5721975-5721994 None:intergenic 30.0%
CTTCATACACAACATGATAT+AGG - chr6.1:5718873-5718892 None:intergenic 30.0%
GAAGACATTTGATATTGTGA+AGG + chr6.1:5718347-5718366 MS.gene074163:CDS 30.0%
GACTACAGATGTAAACAATT+AGG + chr6.1:5717798-5717817 MS.gene074163:intron 30.0%
GAGAGTAAAGTCATTAGTAT+TGG + chr6.1:5719636-5719655 MS.gene074163:CDS 30.0%
GCTTCAAAAGTAGCAAATAA+CGG - chr6.1:5717939-5717958 None:intergenic 30.0%
GTAATAGCAAGTATCTTTCT+CGG + chr6.1:5718791-5718810 MS.gene074163:CDS 30.0%
GTCAGTTAAATTGAGAATGA+TGG - chr6.1:5720907-5720926 None:intergenic 30.0%
GTTACCATAGTTCAAATATG+TGG - chr6.1:5718227-5718246 None:intergenic 30.0%
TGATTTCATATTGGATCCTT+AGG + chr6.1:5718302-5718321 MS.gene074163:intron 30.0%
TGTCGTATCTGATTTCATAT+TGG + chr6.1:5718293-5718312 MS.gene074163:intron 30.0%
TTTACATCTGTAGTCAGTTA+AGG - chr6.1:5717793-5717812 None:intergenic 30.0%
! CATTGTTTTCATGTGTGTTA+TGG - chr6.1:5721430-5721449 None:intergenic 30.0%
! CCAACATTTTTCTCAAACAA+TGG + chr6.1:5721972-5721991 MS.gene074163:CDS 30.0%
! CCATACTTATTTCTCTGTAA+TGG + chr6.1:5718389-5718408 MS.gene074163:CDS 30.0%
! GAGTTCAAGTTAAATCATTC+AGG + chr6.1:5722002-5722021 MS.gene074163:CDS 30.0%
! GTTTATGACGTTTAAAATCG+TGG + chr6.1:5718138-5718157 MS.gene074163:intron 30.0%
! TAGATATCAGTGTCATTAGA+AGG - chr6.1:5721588-5721607 None:intergenic 30.0%
! TGTAGATTTCAAGTACAAGA+AGG + chr6.1:5721896-5721915 MS.gene074163:intron 30.0%
! TTGTTTTCATGTGTGTTATG+GGG - chr6.1:5721428-5721447 None:intergenic 30.0%
!!! AAGGTTTTAAATTGCAGTCA+CGG + chr6.1:5721698-5721717 MS.gene074163:intron 30.0%
!!! CAAAGGAGAAGTTTTTTGAA+TGG + chr6.1:5719900-5719919 MS.gene074163:CDS 30.0%
!!! GTTGATTTTATGGCTAGTTT+TGG + chr6.1:5717866-5717885 MS.gene074163:CDS 30.0%
!!! TCTAATCTCTTTTTTGATGC+AGG + chr6.1:5718531-5718550 MS.gene074163:intron 30.0%
AAAAATGACACGGTCAAATG+TGG + chr6.1:5721747-5721766 MS.gene074163:intron 35.0%
AACTACTTCAAACAGACCAA+AGG + chr6.1:5719883-5719902 MS.gene074163:CDS 35.0%
ACACATATTGTCTCCAAGAA+AGG - chr6.1:5718707-5718726 None:intergenic 35.0%
ACGTCATAAACTAGGATTGT+CGG - chr6.1:5718129-5718148 None:intergenic 35.0%
AGATGTGTTTATAGAGAGAG+TGG - chr6.1:5721327-5721346 None:intergenic 35.0%
AGGAAAGAAGAGTAAAACCT+TGG - chr6.1:5719060-5719079 None:intergenic 35.0%
ATATAGAGAGATACCAATGC+AGG + chr6.1:5718933-5718952 MS.gene074163:intron 35.0%
ATCTCTCTATATGTCAGTGT+TGG - chr6.1:5718925-5718944 None:intergenic 35.0%
ATGTGTTTATAGAGAGAGTG+GGG - chr6.1:5721325-5721344 None:intergenic 35.0%
ATTTCGTAATATTCTCCGGT+TGG - chr6.1:5718438-5718457 None:intergenic 35.0%
CACATATTGTCTCCAAGAAA+GGG - chr6.1:5718706-5718725 None:intergenic 35.0%
CCTGATTTCGTAATATTCTC+CGG - chr6.1:5718442-5718461 None:intergenic 35.0%
CGGTTTAATCAGTTCAATCA+CGG + chr6.1:5720767-5720786 MS.gene074163:intron 35.0%
CGTGATTGAACTGATTAAAC+CGG - chr6.1:5720769-5720788 None:intergenic 35.0%
CTTACTTATCAATATACCCG+AGG - chr6.1:5719715-5719734 None:intergenic 35.0%
CTTCAATGGTGATCTAGATA+GGG + chr6.1:5720012-5720031 MS.gene074163:CDS 35.0%
GAAAATAAAGAGAGGGGTTT+AGG - chr6.1:5721664-5721683 None:intergenic 35.0%
GAAAGACACAAATAGGAACA+TGG - chr6.1:5722130-5722149 None:intergenic 35.0%
GATATTCTTGATATGTCGGA+AGG + chr6.1:5719024-5719043 MS.gene074163:CDS 35.0%
GATGTGTTTATAGAGAGAGT+GGG - chr6.1:5721326-5721345 None:intergenic 35.0%
GATGTTCATTCTAAGTCTTC+TGG + chr6.1:5722101-5722120 MS.gene074163:CDS 35.0%
GATTGTTAGAGTGATGATTC+AGG + chr6.1:5722079-5722098 MS.gene074163:CDS 35.0%
GATTTCATGCTAAAAATCCG+AGG - chr6.1:5720445-5720464 None:intergenic 35.0%
GCTGAATTCTCATTGAATGT+CGG + chr6.1:5720200-5720219 MS.gene074163:intron 35.0%
GGTGCAAATAATAATGTGAG+TGG - chr6.1:5721406-5721425 None:intergenic 35.0%
TATCAATATACCCGAGGAAT+CGG - chr6.1:5719709-5719728 None:intergenic 35.0%
TATCTAGATCACCATTGAAG+AGG - chr6.1:5720012-5720031 None:intergenic 35.0%
TCCAACAAAAGGTTCCAAAT+TGG + chr6.1:5721621-5721640 MS.gene074163:CDS 35.0%
TCTGATGAAGAATCTGAACT+TGG + chr6.1:5720484-5720503 MS.gene074163:intron 35.0%
TCTTCAATGGTGATCTAGAT+AGG + chr6.1:5720011-5720030 MS.gene074163:CDS 35.0%
TCTTCATGTAGGAGAAACAT+TGG + chr6.1:5719560-5719579 MS.gene074163:CDS 35.0%
TTCATATTGGATCCTTAGGA+TGG + chr6.1:5718306-5718325 MS.gene074163:intron 35.0%
TTTACTCTCTTTGCCAAACA+TGG - chr6.1:5719625-5719644 None:intergenic 35.0%
TTTATCCAAATAGGGCCTAA+AGG - chr6.1:5719764-5719783 None:intergenic 35.0%
! ATATCAGTGTCATTAGAAGG+TGG - chr6.1:5721585-5721604 None:intergenic 35.0%
! ATCTTTTCTCGTCGATATTG+AGG - chr6.1:5719151-5719170 None:intergenic 35.0%
! ATGTGCTATTACAGCAAATG+CGG - chr6.1:5719334-5719353 None:intergenic 35.0%
! CATACATGCTTTTCAAAGGA+TGG + chr6.1:5718645-5718664 MS.gene074163:CDS 35.0%
! CATCCTTTGAAAAGCATGTA+TGG - chr6.1:5718647-5718666 None:intergenic 35.0%
! GCTTCAACTGAATTTGAAGT+TGG + chr6.1:5721537-5721556 MS.gene074163:intron 35.0%
! GTCAAAGTATCTAATGCATG+TGG - chr6.1:5721852-5721871 None:intergenic 35.0%
! GTTATTTCATACTGAGATCG+TGG + chr6.1:5718076-5718095 MS.gene074163:intron 35.0%
! GTTCCATACATGCTTTTCAA+AGG + chr6.1:5718641-5718660 MS.gene074163:CDS 35.0%
! TGTTTGTGGTGAAAGTTTTG+CGG - chr6.1:5721372-5721391 None:intergenic 35.0%
! TGTTTTCATGTGTGTTATGG+GGG - chr6.1:5721427-5721446 None:intergenic 35.0%
! TTTGGTGCATACATACTACA+TGG + chr6.1:5717679-5717698 MS.gene074163:CDS 35.0%
!! ACCAATTTGGAACCTTTTGT+TGG - chr6.1:5721625-5721644 None:intergenic 35.0%
!! AGATACGACATTTTGACACA+CGG - chr6.1:5718283-5718302 None:intergenic 35.0%
!! AGTCATTAGTATTGGTTTGC+CGG + chr6.1:5719644-5719663 MS.gene074163:CDS 35.0%
!! ATTGTTGGAAGTATTGTAGG+TGG + chr6.1:5717891-5717910 MS.gene074163:CDS 35.0%
!! GGAATTGTTGGAAGTATTGT+AGG + chr6.1:5717888-5717907 MS.gene074163:CDS 35.0%
!! TGGTTTTACTAGAGTCGTAT+GGG - chr6.1:5721298-5721317 None:intergenic 35.0%
!! TTATTTCTGTGAAGGCTTCA+AGG + chr6.1:5720292-5720311 MS.gene074163:intron 35.0%
!! TTGTGTATGAAGTACTGACA+TGG + chr6.1:5718881-5718900 MS.gene074163:intron 35.0%
!! TTTGAAGTTGGTGACCTAAA+AGG + chr6.1:5721549-5721568 MS.gene074163:CDS 35.0%
!!! GCTACTTTTGAAGCTATTGA+AGG + chr6.1:5717945-5717964 MS.gene074163:CDS 35.0%
!!! TACCAGTGCTGTTGATTTTA+TGG + chr6.1:5717856-5717875 MS.gene074163:CDS 35.0%
!!! TATTTTAGGGCTAACCTGAT+AGG - chr6.1:5718837-5718856 None:intergenic 35.0%
!!! TTGGTTTTACTAGAGTCGTA+TGG - chr6.1:5721299-5721318 None:intergenic 35.0%
AAATCTTTCCGTGTCTGAAG+AGG + chr6.1:5719967-5719986 MS.gene074163:CDS 40.0%
AATTTCGACAACGGTCTAGA+TGG - chr6.1:5718249-5718268 None:intergenic 40.0%
ACCTGTGAATGGCATAGAAA+GGG + chr6.1:5720606-5720625 MS.gene074163:intron 40.0%
ACGGGAAATAGTCTTTGCTA+AGG - chr6.1:5719224-5719243 None:intergenic 40.0%
AGCCATAAAATCAACAGCAC+TGG - chr6.1:5717861-5717880 None:intergenic 40.0%
AGTATGTGACTAAACCATCG+TGG + chr6.1:5721082-5721101 MS.gene074163:intron 40.0%
ATGGCATAGAAAGGGATTGA+AGG + chr6.1:5720614-5720633 MS.gene074163:intron 40.0%
ATGTTTGGGCTTCCAACAAA+AGG + chr6.1:5721610-5721629 MS.gene074163:CDS 40.0%
CAAGGTTTCCGACATACAAA+AGG + chr6.1:5720332-5720351 MS.gene074163:CDS 40.0%
CCGGAGAATATTACGAAATC+AGG + chr6.1:5718439-5718458 MS.gene074163:CDS 40.0%
CCTCTGCATCATAGTTTAAC+CGG + chr6.1:5720747-5720766 MS.gene074163:intron 40.0%
CGGGAAATAGTCTTTGCTAA+GGG - chr6.1:5719223-5719242 None:intergenic 40.0%
CTCATGAGTCGTGTAGTTAT+TGG + chr6.1:5719518-5719537 MS.gene074163:intron 40.0%
GACATACAAGAAGCCATGTT+TGG + chr6.1:5719609-5719628 MS.gene074163:CDS 40.0%
GATTGAACTGAGATCGAACT+AGG - chr6.1:5720846-5720865 None:intergenic 40.0%
GCTTGAAGAAGACAATAAGC+CGG - chr6.1:5719666-5719685 None:intergenic 40.0%
GGACATATTACTGTGTTGTG+AGG + chr6.1:5717700-5717719 MS.gene074163:CDS 40.0%
GTACAAGAAGGATTCAGTGA+TGG + chr6.1:5721908-5721927 MS.gene074163:CDS 40.0%
TACCTGTGAATGGCATAGAA+AGG + chr6.1:5720605-5720624 MS.gene074163:intron 40.0%
TACTAGAGTCGTATGGGAAA+TGG - chr6.1:5721292-5721311 None:intergenic 40.0%
TGAGTCGTGTAGTTATTGGA+TGG + chr6.1:5719522-5719541 MS.gene074163:intron 40.0%
TGCAAGGAATGTCTTCATGT+AGG + chr6.1:5719549-5719568 MS.gene074163:CDS 40.0%
TGCAAGTTAGTCCTCTTCAA+TGG + chr6.1:5719998-5720017 MS.gene074163:CDS 40.0%
TGCAGGCTACATTATATTCC+TGG + chr6.1:5718548-5718567 MS.gene074163:intron 40.0%
TTTCTATGCCATTCACAGGT+AGG - chr6.1:5720606-5720625 None:intergenic 40.0%
! AACCAAGAGAAGCACAAGTA+AGG - chr6.1:5721487-5721506 None:intergenic 40.0%
! AAGGATTCAGTGATGGAAGT+TGG + chr6.1:5721915-5721934 MS.gene074163:CDS 40.0%
! ACAATATGTGTGCCTTTTGC+AGG + chr6.1:5718716-5718735 MS.gene074163:CDS 40.0%
! AGCTGAGTTGAAACCATTTG+AGG + chr6.1:5719267-5719286 MS.gene074163:CDS 40.0%
! CTCTATTAAAGCCGATTCCT+CGG + chr6.1:5719695-5719714 MS.gene074163:CDS 40.0%
! GGTCGGTTCAACTTTCATTA+AGG + chr6.1:5721768-5721787 MS.gene074163:intron 40.0%
! GTGAAAGTTTTGCGGAGTTA+AGG - chr6.1:5721364-5721383 None:intergenic 40.0%
! TAAGGGCTTAGTTCTTGAGA+AGG - chr6.1:5719206-5719225 None:intergenic 40.0%
! TCGAATCGCCTTTTGTATGT+CGG - chr6.1:5720343-5720362 None:intergenic 40.0%
! TCTATTAAAGCCGATTCCTC+GGG + chr6.1:5719696-5719715 MS.gene074163:CDS 40.0%
! TGAAGAGGACTAACTTGCAA+AGG - chr6.1:5719997-5720016 None:intergenic 40.0%
! TGTGCTATTACAGCAAATGC+GGG - chr6.1:5719333-5719352 None:intergenic 40.0%
! TTGCTGTTCTAGTTGCCTTT+AGG + chr6.1:5719746-5719765 MS.gene074163:intron 40.0%
!! AAGTTGGTGACCTAAAAGGT+TGG + chr6.1:5721553-5721572 MS.gene074163:CDS 40.0%
!! AGTTGGTGACCTAAAAGGTT+GGG + chr6.1:5721554-5721573 MS.gene074163:CDS 40.0%
!! ATGAAGTACTGACATGGATG+CGG + chr6.1:5718887-5718906 MS.gene074163:intron 40.0%
!! ATTGAGAATGATGGGTTCCT+CGG - chr6.1:5720898-5720917 None:intergenic 40.0%
!! GAAGAGCTTGCTGATAAACA+TGG + chr6.1:5720385-5720404 MS.gene074163:CDS 40.0%
!! GGAGAAACATTGGTTTCTCA+AGG + chr6.1:5719570-5719589 MS.gene074163:CDS 40.0%
!! TTTAACTTTTGGTCCTCCTC+CGG + chr6.1:5720042-5720061 MS.gene074163:CDS 40.0%
!!! GATCAAAGAGTGCTTTTCCT+CGG + chr6.1:5720425-5720444 MS.gene074163:CDS 40.0%
!!! TGGCTAGTTTTGGGAATTGT+TGG + chr6.1:5717876-5717895 MS.gene074163:CDS 40.0%
!!! TGGTGCAAGAGTTTTGTTTG+TGG - chr6.1:5721386-5721405 None:intergenic 40.0%
AAGAAAGAGGACTCCTGCAT+TGG - chr6.1:5718949-5718968 None:intergenic 45.0%
AAGGTAGTCCTCTTCAGACA+CGG - chr6.1:5719978-5719997 None:intergenic 45.0%
AAGTTGCGACAATGTACCGA+AGG - chr6.1:5718978-5718997 None:intergenic 45.0%
AATCAGGATCAAACCAACCG+AGG + chr6.1:5720878-5720897 MS.gene074163:intron 45.0%
AGTCTACACCTACCTGTGAA+TGG + chr6.1:5720595-5720614 MS.gene074163:intron 45.0%
AGTTGCCTTTAGGCCCTATT+TGG + chr6.1:5719756-5719775 MS.gene074163:intron 45.0%
ATGACACGGTCAAATGTGGT+CGG + chr6.1:5721751-5721770 MS.gene074163:intron 45.0%
ATGGATGACCTGAGACAAGA+CGG + chr6.1:5718408-5718427 MS.gene074163:CDS 45.0%
ATGGCCATAGAAGGATAGCA+AGG - chr6.1:5718742-5718761 None:intergenic 45.0%
ATTGTAGGTGGTGCAGCTTA+TGG + chr6.1:5717903-5717922 MS.gene074163:CDS 45.0%
CACCTTACTTGTGCTTCTCT+TGG + chr6.1:5721482-5721501 MS.gene074163:intron 45.0%
CAGGAGTCCTCTTTCTTGTT+TGG + chr6.1:5718952-5718971 MS.gene074163:intron 45.0%
CAGTATCATCAGCTGCATTG+AGG - chr6.1:5719859-5719878 None:intergenic 45.0%
CATACTGAGATCGTGGTTAC+TGG + chr6.1:5718083-5718102 MS.gene074163:intron 45.0%
CCGGTTAAACTATGATGCAG+AGG - chr6.1:5720750-5720769 None:intergenic 45.0%
CGTTTGTTTCGTGACCTCAT+TGG + chr6.1:5718671-5718690 MS.gene074163:CDS 45.0%
CTGTTGTAGCAGCAATTCTC+GGG + chr6.1:5718573-5718592 MS.gene074163:CDS 45.0%
GCATCAGGACATTGTGAGAA+AGG + chr6.1:5722047-5722066 MS.gene074163:CDS 45.0%
GCTGTTGTAGCAGCAATTCT+CGG + chr6.1:5718572-5718591 MS.gene074163:CDS 45.0%
GGAAACTCAGCTGTCATACT+TGG + chr6.1:5717654-5717673 MS.gene074163:CDS 45.0%
GGGACATTCTACTTCATCAG+TGG + chr6.1:5722023-5722042 MS.gene074163:CDS 45.0%
GTATGGGAAATGGAGGTAGT+GGG - chr6.1:5721282-5721301 None:intergenic 45.0%
TACTTCATCAGTGGTGCATC+AGG + chr6.1:5722032-5722051 MS.gene074163:CDS 45.0%
TAGAGTCGTATGGGAAATGG+AGG - chr6.1:5721289-5721308 None:intergenic 45.0%
TATAGAGAGAGTGGGGAAGT+TGG - chr6.1:5721318-5721337 None:intergenic 45.0%
TCCCTTTCTATGCCATTCAC+AGG - chr6.1:5720610-5720629 None:intergenic 45.0%
TCGTAATATTCTCCGGTTGG+TGG - chr6.1:5718435-5718454 None:intergenic 45.0%
TCTAGCCAATGCGTCAAGTT+CGG - chr6.1:5720086-5720105 None:intergenic 45.0%
TGCTATCCTTCTATGGCCAT+TGG + chr6.1:5718742-5718761 MS.gene074163:CDS 45.0%
TGGATCCTTAGGATGGAACA+TGG + chr6.1:5718313-5718332 MS.gene074163:intron 45.0%
! CAAGAGAAGCACAAGTAAGG+TGG - chr6.1:5721484-5721503 None:intergenic 45.0%
! CAGCTGTCATACTTGGTCTT+TGG + chr6.1:5717661-5717680 MS.gene074163:CDS 45.0%
! CCTCTTTCTTGTTTGGCCTT+CGG + chr6.1:5718959-5718978 MS.gene074163:CDS 45.0%
! GTGGAACAACCCAACCTTTT+AGG - chr6.1:5721566-5721585 None:intergenic 45.0%
! GTTATTGGATGGCTTGTGCA+AGG + chr6.1:5719533-5719552 MS.gene074163:intron 45.0%
! TTCAGTGATGGAAGTTGGCA+AGG + chr6.1:5721920-5721939 MS.gene074163:CDS 45.0%
!! AACTTGACGCATTGGCTAGA+AGG + chr6.1:5720086-5720105 MS.gene074163:CDS 45.0%
!! AAGTATCTTTCTCGGTGCTC+GGG + chr6.1:5718799-5718818 MS.gene074163:CDS 45.0%
!! CAAGTATCTTTCTCGGTGCT+CGG + chr6.1:5718798-5718817 MS.gene074163:CDS 45.0%
!! ATTGTATAAATAAATTATAA+CGG - chr6.1:5721727-5721746 None:intergenic 5.0%
!!! TATTATTTTTAAAGAAAAAA+AGG - chr6.1:5721823-5721842 None:intergenic 5.0%
ACTAGCCGAACTTGACGCAT+TGG + chr6.1:5720078-5720097 MS.gene074163:CDS 50.0%
ACTATGATGCAGAGGTCTCG+TGG - chr6.1:5720742-5720761 None:intergenic 50.0%
AGGATAGCAAGGCCTGCAAA+AGG - chr6.1:5718731-5718750 None:intergenic 50.0%
ATTGCTGCTACAACAGCACC+AGG - chr6.1:5718569-5718588 None:intergenic 50.0%
CAACAGCCAATGGCCATAGA+AGG - chr6.1:5718751-5718770 None:intergenic 50.0%
CCGAAGGCCAAACAAGAAAG+AGG - chr6.1:5718962-5718981 None:intergenic 50.0%
CGGAAGGATCTTGCTTTCCA+AGG + chr6.1:5719040-5719059 MS.gene074163:CDS 50.0%
CGTATGGGAAATGGAGGTAG+TGG - chr6.1:5721283-5721302 None:intergenic 50.0%
GTGCTCCATGTTCCATCCTA+AGG - chr6.1:5718321-5718340 None:intergenic 50.0%
TTATGGATCATGGGCCACGA+TGG - chr6.1:5721099-5721118 None:intergenic 50.0%
! AGGGGTTTAGGGCATACGAA+TGG - chr6.1:5721652-5721671 None:intergenic 50.0%
! CAGGCCTTGCTATCCTTCTA+TGG + chr6.1:5718735-5718754 MS.gene074163:CDS 50.0%
! CTATGGCCATTGGCTGTTGT+TGG + chr6.1:5718752-5718771 MS.gene074163:CDS 50.0%
! GAGAAGCACAAGTAAGGTGG+TGG - chr6.1:5721481-5721500 None:intergenic 50.0%
!! AAGTTCGGCTAGTTTGCGGT+CGG - chr6.1:5720071-5720090 None:intergenic 50.0%
!! AGAATGATGGGTTCCTCGGT+TGG - chr6.1:5720894-5720913 None:intergenic 50.0%
!! CGTCAAGTTCGGCTAGTTTG+CGG - chr6.1:5720075-5720094 None:intergenic 50.0%
AACGCGCCAACAACAGCCAA+TGG - chr6.1:5718761-5718780 None:intergenic 55.0%
AGACAAGACGGACCACCAAC+CGG + chr6.1:5718420-5718439 MS.gene074163:CDS 55.0%
GGCTGGAGTTGTTGCCTATC+AGG + chr6.1:5718820-5718839 MS.gene074163:CDS 55.0%
! GCTAGTTTGCGGTCGGATTC+CGG - chr6.1:5720064-5720083 None:intergenic 55.0%
! TTGGTGGTCCGTCTTGTCTC+AGG - chr6.1:5718419-5718438 None:intergenic 55.0%
!! TGGGAAATGGAGGTAGTGGG+TGG - chr6.1:5721279-5721298 None:intergenic 55.0%
AAGGGCCTTCGCGACCAATG+AGG - chr6.1:5718688-5718707 None:intergenic 60.0%
AGTTTGCGGTCGGATTCCGG+AGG - chr6.1:5720061-5720080 None:intergenic 60.0%
CGTGACCTCATTGGTCGCGA+AGG + chr6.1:5718680-5718699 MS.gene074163:CDS 60.0%
TGGTCGCGAAGGCCCTTTCT+TGG + chr6.1:5718691-5718710 MS.gene074163:CDS 60.0%
!! ATCTTTCTCGGTGCTCGGGC+TGG + chr6.1:5718803-5718822 MS.gene074163:CDS 60.0%
TTGCGGTCGGATTCCGGAGG+AGG - chr6.1:5720058-5720077 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr6.1 gene 5717645 5722193 5717645 ID=MS.gene074163
chr6.1 mRNA 5717645 5722193 5717645 ID=MS.gene074163.t1;Parent=MS.gene074163
chr6.1 exon 5717645 5717721 5717645 ID=MS.gene074163.t1.exon1;Parent=MS.gene074163.t1
chr6.1 CDS 5717645 5717721 5717645 ID=cds.MS.gene074163.t1;Parent=MS.gene074163.t1
chr6.1 exon 5717806 5718001 5717806 ID=MS.gene074163.t1.exon2;Parent=MS.gene074163.t1
chr6.1 CDS 5717806 5718001 5717806 ID=cds.MS.gene074163.t1;Parent=MS.gene074163.t1
chr6.1 exon 5718324 5718460 5718324 ID=MS.gene074163.t1.exon3;Parent=MS.gene074163.t1
chr6.1 CDS 5718324 5718460 5718324 ID=cds.MS.gene074163.t1;Parent=MS.gene074163.t1
chr6.1 exon 5718553 5718841 5718553 ID=MS.gene074163.t1.exon4;Parent=MS.gene074163.t1
chr6.1 CDS 5718553 5718841 5718553 ID=cds.MS.gene074163.t1;Parent=MS.gene074163.t1
chr6.1 exon 5718955 5719061 5718955 ID=MS.gene074163.t1.exon5;Parent=MS.gene074163.t1
chr6.1 CDS 5718955 5719061 5718955 ID=cds.MS.gene074163.t1;Parent=MS.gene074163.t1
chr6.1 exon 5719147 5719288 5719147 ID=MS.gene074163.t1.exon6;Parent=MS.gene074163.t1
chr6.1 CDS 5719147 5719288 5719147 ID=cds.MS.gene074163.t1;Parent=MS.gene074163.t1
chr6.1 exon 5719534 5719729 5719534 ID=MS.gene074163.t1.exon7;Parent=MS.gene074163.t1
chr6.1 CDS 5719534 5719729 5719534 ID=cds.MS.gene074163.t1;Parent=MS.gene074163.t1
chr6.1 exon 5719867 5720107 5719867 ID=MS.gene074163.t1.exon8;Parent=MS.gene074163.t1
chr6.1 CDS 5719867 5720107 5719867 ID=cds.MS.gene074163.t1;Parent=MS.gene074163.t1
chr6.1 exon 5720306 5720475 5720306 ID=MS.gene074163.t1.exon9;Parent=MS.gene074163.t1
chr6.1 CDS 5720306 5720475 5720306 ID=cds.MS.gene074163.t1;Parent=MS.gene074163.t1
chr6.1 exon 5721538 5721654 5721538 ID=MS.gene074163.t1.exon10;Parent=MS.gene074163.t1
chr6.1 CDS 5721538 5721654 5721538 ID=cds.MS.gene074163.t1;Parent=MS.gene074163.t1
chr6.1 exon 5721901 5722193 5721901 ID=MS.gene074163.t1.exon11;Parent=MS.gene074163.t1
chr6.1 CDS 5721901 5722193 5721901 ID=cds.MS.gene074163.t1;Parent=MS.gene074163.t1
Gene Sequence

>MS.gene074163

ATGACAATTGGAAACTCAGCTGTCATACTTGGTCTTTGGTGCATACATACTACATGGACATATTACTGTGTTGTGAGGTACTTTTCTTAGTTTCGACAAATCGATCAATTTATTTAGATTCGAGCTTTTTACATCGTATTGATTTCCTTAACTGACTACAGATGTAAACAATTAGGACCATTACTAAAGTTTGTGATGTGCACGATTTTACTACCAGTGCTGTTGATTTTATGGCTAGTTTTGGGAATTGTTGGAAGTATTGTAGGTGGTGCAGCTTATGGATTTCTTTCGCCGTTATTTGCTACTTTTGAAGCTATTGAAGGAGAAAAAGAGAACAAAATTTTCCACTGTTTTATGGTATGTTTTGTTTTCTGAAGTTTTTCAAGTACGTGTTATTTCATATAGAGACGTATTATTTCATATAGAGACGTGTTATTTCATACTGAGATCGTGGTTACTGGACATCGTGTACATTTGAACACCGACAATCCTAGTTTATGACGTTTAAAATCGTGGTTAAATATGTTCAGTAGATAATTAATGAGTTGCGACACCTTGTTATATTCATTACGTAATTAACCACATATTTGAACTATGGTAACCATCTAGACCGTTGTCGAAATTTGTTATCAAATCCGTGTGTCAAAATGTCGTATCTGATTTCATATTGGATCCTTAGGATGGAACATGGAGCACTATTTTGAAGACATTTGATATTGTGAAGGATGTAAGAGATGCATGCTTCCATACTTATTTCTCTGTAATGGATGACCTGAGACAAGACGGACCACCAACCGGAGAATATTACGAAATCAGGTTTGATAGTCTTATTGAGTCTCTAATCATGAAAGCATACCTTGATTTTCTGTGAAATTTTATTGATGTTTCTAATCTCTTTTTTGATGCAGGCTACATTATATTCCTGGTGCTGTTGTAGCAGCAATTCTCGGGATCATAGTTGATGTGCCGATTATATCATTAGTTGCCTTATGTAAAGTTCCATACATGCTTTTCAAAGGATGGAATCGTTTGTTTCGTGACCTCATTGGTCGCGAAGGCCCTTTCTTGGAGACAATATGTGTGCCTTTTGCAGGCCTTGCTATCCTTCTATGGCCATTGGCTGTTGTTGGCGCGTTTATAGCATCTGTAATAGCAAGTATCTTTCTCGGTGCTCGGGCTGGAGTTGTTGCCTATCAGGTTAGCCCTAAAATAAGATATTATTGTTCCTATATCATGTTGTGTATGAAGTACTGACATGGATGCGGACAGACACGATACCAACACTGACATATAGAGAGATACCAATGCAGGAGTCCTCTTTCTTGTTTGGCCTTCGGTACATTGTCGCAACTTTGTCTCTTTATGATGAATATAGTAATGATATTCTTGATATGTCGGAAGGATCTTGCTTTCCAAGGTTTTACTCTTCTTTCCTTTGTAATACATGTTGTTTTGAGATTTGCACTTACTGATACCCTTGACTTGTGTTTGATATTTGATAGGCCTCAATATCGACGAGAAAAGATTGAAATATCACGGACATCTTCGCATTCAAATTCCTTCTCAAGAACTAAGCCCTTAGCAAAGACTATTTCCCGTACAATTTCTCTAACGAATAACATAGCTGAGTTGAAACCATTTGAGGTACTTTTTTTACAGATTCAGATTTAAGACATTTGTGTTTACCCGCATTTGCTGTAATAGCACATCGATATTGTTTGATTAAAATCAGATAACTCACATTTCGGCTACATGATTTGAGTCAAAATGAGTTGTTTGATTTAGATCGAACGACTCACAATTTGCGACTACAGAAAATGCAAGACTTTCAAGTTTTATCTTTTTCGTTCATTTGTGAACTAAATAAATGTTGCTCATGAGTCGTGTAGTTATTGGATGGCTTGTGCAAGGAATGTCTTCATGTAGGAGAAACATTGGTTTCTCAAGGACTAATAACACATGATGACATACAAGAAGCCATGTTTGGCAAAGAGAGTAAAGTCATTAGTATTGGTTTGCCGGCTTATTGTCTTCTTCAAGCGCTTTTGCGCTCTATTAAAGCCGATTCCTCGGGTATATTGATAAGTAAGTAAAGCACTTGTTGCTGTTCTAGTTGCCTTTAGGCCCTATTTGGATAAACAACTTAATTAAGCACTTCTAATGTTCAAAATCATTTGCTTTTAAAATGGAATAAGTGATTTTTGATTACTTCCTCAATGCAGCTGATGATACTGAACTAACTACTTCAAACAGACCAAAGGAGAAGTTTTTTGAATGGTTCCTTAATCCACTTTTGATCATTAAAGATCAAATCAAAGCTGAAAATCTTTCCGTGTCTGAAGAGGACTACCTTTGCAAGTTAGTCCTCTTCAATGGTGATCTAGATAGGGTAAAAAATTTAACTTTTGGTCCTCCTCCGGAATCCGACCGCAAACTAGCCGAACTTGACGCATTGGCTAGAAGGTACATGTCACAAAAAAAAATCAAGTTACTGAATTAGCTTTACATTGATATCCAATAAAATTTCAGTATTTTACCGTTATTATGTTTATATCGCTGAATTCTCATTGAATGTCGGTATAAAACTAAGTTACACTAACGATGAAATTTTGTTAAACTTTTTAATTATTTTCAATAACTTTTGTACTTATTTCTGTGAAGGCTTCAAGGTATAACAAAATTTATCACAAGGTTTCCGACATACAAAAGGCGATTCGATGTTCTTGTGAAAACATTATCTGAAGAGCTTGCTGATAAACATGGAACTTCAACAATAATCAGATCAAAGAGTGCTTTTCCTCGGATTTTTAGCATGAAATCATTCAACAAGAGTAATGGTTCTGATGAAGAATCTGAACTTGGAAAAACTTCAGAATCTTCATTATAAGAAATTTAAGAATATCATGTTATGTAATTTTTCATGCAAAATCATGTATCAAGTCTTCTTTATAGTCTACACCTACCTGTGAATGGCATAGAAAGGGATTGAAGGTATGAAAGAAAATAATTATAAGTTAACATATTTGATTAATATTGTGCTCTTAATTTTATGTACGATGATTAATGTTTAAAAAAAATGGAATGAAAATCGAATCCACGAGACCTCTGCATCATAGTTTAACCGGTTTAATCAGTTCAATCACGGTTGAAGAATAAATACATAAATGTAAAAAATGAAAATCGGTTGAACAAGATCGACCTAGTTCGATCTCAGTTCAATCATAATGCAATGTAATCAGGATCAAACCAACCGAGGAACCCATCATTCTCAATTTAACTGACTGAACTAAATTTTGTTTTTAAAATATTGTTATGCACACACCTGATTTTTTTTATCTCTTCACTCATGAAAACTATTAGAAAAATAACAAATTAAATTAAAAACATTATATTAGTATTTACTAAAAAAAACATTATATTTGTAAAATATTAAAGTGAGTATGTGACTAAACCATCGTGGCCCATGATCCATAAGTTGCAAATTTCTTCTTTTTCCCTCTAAATTTTCCATATGAAAAATTTCAATTTATTTAATCTAATTGCAGTTTAGACCCTATTAACTAAGTCAAATAAATTTAACAAACATAATGCATAAAAAAATATGTACGACTAATTTTACATGTAACTATAACCACCCACTACCTCCATTTCCCATACGACTCTAGTAAAACCAACTTCCCCACTCTCTCTATAAACACATCTATAAATTAAACTAACCTTAACTCCGCAAAACTTTCACCACAAACAAAACTCTTGCACCACTCACATTATTATTTGCACCCCCATAACACACATGAAAACAATGACATCTTCTTCTTCTTTCTCTTTGTATTCCACCACCTTACTTGTGCTTCTCTTGGTTCTTTTCTCTTCACTACAATGTTCTATTGTAGCTTCAACTGAATTTGAAGTTGGTGACCTAAAAGGTTGGGTTGTTCCACCTTCTAATGACACTGATATCTACAATGTTTGGGCTTCCAACAAAAGGTTCCAAATTGGTGACTCCATTCGTATGCCCTAAACCCCTCTCTTTATTTTCATCAATATAATTTCAAGGTTTTAAATTGCAGTCACGGTAACCGTTATAATTTATTTATACAATAAAAATGACACGGTCAAATGTGGTCGGTTCAACTTTCATTAAGGTCACATGCAGTAGATACTTTAATGTCTCGCCTTTTTTTCTTTAAAAATAATATTACAGCCACATGCATTAGATACTTTGACATTTTTTGTTTTTGTTTTTGTGTTTGTAGATTTCAAGTACAAGAAGGATTCAGTGATGGAAGTTGGCAAGGAAAATTACGACGATTGCAATGCGACACAACCAACATTTTTCTCAAACAATGGAAACACTGAGTTCAAGTTAAATCATTCAGGGACATTCTACTTCATCAGTGGTGCATCAGGACATTGTGAGAAAGGACAAAAGATGATTGTTAGAGTGATGATTCAGGATGTTCATTCTAAGTCTTCTGGTTACCATGTTCCTATTTGTGTCTTTCAAATTGTGTTTGTTTTGGCATTTGTTGCTTCCTATGTAATTTGA
Protein sequence

>MS.gene074163.t1

MTIGNSAVILGLWCIHTTWTYYCVVRCKQLGPLLKFVMCTILLPVLLILWLVLGIVGSIVGGAAYGFLSPLFATFEAIEGEKENKIFHCFMDGTWSTILKTFDIVKDVRDACFHTYFSVMDDLRQDGPPTGEYYEIRLHYIPGAVVAAILGIIVDVPIISLVALCKVPYMLFKGWNRLFRDLIGREGPFLETICVPFAGLAILLWPLAVVGAFIASVIASIFLGARAGVVAYQESSFLFGLRYIVATLSLYDEYSNDILDMSEGSCFPRPQYRREKIEISRTSSHSNSFSRTKPLAKTISRTISLTNNIAELKPFELLDGLCKECLHVGETLVSQGLITHDDIQEAMFGKESKVISIGLPAYCLLQALLRSIKADSSGILITDDTELTTSNRPKEKFFEWFLNPLLIIKDQIKAENLSVSEEDYLCKLVLFNGDLDRVKNLTFGPPPESDRKLAELDALARRLQGITKFITRFPTYKRRFDVLVKTLSEELADKHGTSTIIRSKSAFPRIFSMKSFNKTSTEFEVGDLKGWVVPPSNDTDIYNVWASNKRFQIGDSIHFKYKKDSVMEVGKENYDDCNATQPTFFSNNGNTEFKLNHSGTFYFISGASGHCEKGQKMIVRVMIQDVHSKSSGYHVPICVFQIVFVLAFVASYVI