Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044396.t1 | XP_024638816.1 | 99.3 | 280 | 2 | 0 | 3 | 282 | 2 | 281 | 9.20E-149 | 536.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044396.t1 | Q43157 | 88.0 | 284 | 28 | 2 | 5 | 282 | 2 | 285 | 5.0e-135 | 481.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044396.t1 | A0A072V1G6 | 99.3 | 280 | 2 | 0 | 3 | 282 | 2 | 281 | 6.7e-149 | 536.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene044396 | MS.gene71518 | PPI |
| MS.gene044396 | MS.gene060454 | PPI |
| MS.gene044396 | MS.gene62532 | PPI |
| MS.gene044396 | MS.gene040340 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044396.t1 | MTR_4g108800 | 99.286 | 280 | 2 | 0 | 3 | 282 | 2 | 281 | 0.0 | 565 |
| MS.gene044396.t1 | MTR_0937s0020 | 48.677 | 189 | 87 | 2 | 26 | 214 | 289 | 467 | 8.12e-49 | 172 |
| MS.gene044396.t1 | MTR_7g029630 | 39.171 | 217 | 124 | 3 | 61 | 274 | 7 | 218 | 1.10e-45 | 153 |
| MS.gene044396.t1 | MTR_7g029630 | 37.008 | 127 | 76 | 2 | 96 | 219 | 15 | 140 | 1.59e-20 | 86.7 |
| MS.gene044396.t1 | MTR_3g449340 | 34.058 | 138 | 73 | 4 | 124 | 253 | 1 | 128 | 6.81e-12 | 62.8 |
| MS.gene044396.t1 | MTR_4g089175 | 83.333 | 30 | 5 | 0 | 78 | 107 | 22 | 51 | 8.40e-11 | 58.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044396.t1 | AT5G61410 | 85.714 | 280 | 40 | 0 | 3 | 282 | 2 | 281 | 2.81e-179 | 495 |
| MS.gene044396.t1 | AT5G61410 | 85.714 | 280 | 40 | 0 | 3 | 282 | 2 | 281 | 2.81e-179 | 495 |
| MS.gene044396.t1 | AT3G01850 | 37.778 | 225 | 131 | 4 | 61 | 281 | 6 | 225 | 9.76e-47 | 156 |
| MS.gene044396.t1 | AT3G01850 | 37.778 | 225 | 131 | 4 | 61 | 281 | 6 | 225 | 9.76e-47 | 156 |
| MS.gene044396.t1 | AT1G63290 | 39.631 | 217 | 123 | 3 | 61 | 274 | 8 | 219 | 1.13e-43 | 148 |
| MS.gene044396.t1 | AT3G01850 | 37.629 | 194 | 112 | 4 | 92 | 281 | 10 | 198 | 1.92e-35 | 126 |
| MS.gene044396.t1 | AT3G01850 | 37.629 | 194 | 112 | 4 | 92 | 281 | 10 | 198 | 1.92e-35 | 126 |
Find 77 sgRNAs with CRISPR-Local
Find 194 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCCGCCAACTTTGCAAAAT+TGG | 0.109693 | 8.4:-18559417 | MS.gene044396:CDS |
| AGAGGTCCAATAGTAATATT+TGG | 0.187699 | 8.4:+18559193 | None:intergenic |
| CATTCCTTTGTAGCTATAAA+AGG | 0.220868 | 8.4:-18557037 | MS.gene044396:intron |
| GTTGCTGGTTCTGCTGTGTT+TGG | 0.328175 | 8.4:-18557170 | MS.gene044396:CDS |
| CTCTCTAGGGTGTGAATCCT+TGG | 0.328972 | 8.4:-18557628 | MS.gene044396:intron |
| TTGGATTCATGTTGATGTTA+TGG | 0.329699 | 8.4:-18559230 | MS.gene044396:CDS |
| GAAAATTTCAACTGTGGTTA+AGG | 0.331095 | 8.4:-18559498 | MS.gene044396:CDS |
| GGAGCTAATGCACTGGTTGC+TGG | 0.334561 | 8.4:-18557185 | MS.gene044396:CDS |
| TTTGTCCCAAATATTACTAT+TGG | 0.352259 | 8.4:-18559199 | MS.gene044396:CDS |
| CTTTGCAAAATTGGGAGAAC+AGG | 0.352968 | 8.4:-18559408 | MS.gene044396:intron |
| TTAGCGGAGTACCAGGGTTT+AGG | 0.354271 | 8.4:+18558578 | None:intergenic |
| TCCGCCAACTTTGCAAAATT+GGG | 0.359542 | 8.4:-18559416 | MS.gene044396:CDS |
| GAGGCCTTTCACACAGAAAC+TGG | 0.388208 | 8.4:+18556989 | None:intergenic |
| AAATCTGGCACCCGCTGATC+TGG | 0.396879 | 8.4:+18559025 | None:intergenic |
| AGCACCTTGTAAGCATTTGC+TGG | 0.401136 | 8.4:+18557581 | None:intergenic |
| GCTCCTGCTTTGATGAAATC+TGG | 0.406074 | 8.4:+18559010 | None:intergenic |
| CCCTGTGACAGATTTACCTT+TGG | 0.408758 | 8.4:-18559152 | MS.gene044396:CDS |
| TAGAGTTGGCTGGTTGTGAT+TGG | 0.411673 | 8.4:-18559249 | MS.gene044396:CDS |
| GAGAAGATTGTGCGTGGAGA+AGG | 0.423151 | 8.4:-18557742 | MS.gene044396:intron |
| CCTTGAGAAAGTGAGAGAAC+GGG | 0.429377 | 8.4:+18560199 | None:intergenic |
| TCTGTAAACCCTGGCTTTGG+TGG | 0.447445 | 8.4:-18557807 | MS.gene044396:CDS |
| GAGGTCCAATAGTAATATTT+GGG | 0.451344 | 8.4:+18559194 | None:intergenic |
| GATTAATTGCACGATGCAAA+TGG | 0.460222 | 8.4:+18558948 | None:intergenic |
| ATTTGGCAGGTGATTGAGGC+TGG | 0.461400 | 8.4:-18557206 | MS.gene044396:intron |
| GGTGCTGGCAGTGGTTGACT+TGG | 0.467221 | 8.4:-18557841 | MS.gene044396:intron |
| AAACTCTGGCCACCAAAGCC+AGG | 0.471474 | 8.4:+18557798 | None:intergenic |
| GCAATAGAATATGTTCTTGA+TGG | 0.472384 | 8.4:-18558553 | MS.gene044396:intron |
| ATTGCACTTAGCGGAGTACC+AGG | 0.474775 | 8.4:+18558571 | None:intergenic |
| ATGTCTGTAAACCCTGGCTT+TGG | 0.475764 | 8.4:-18557810 | MS.gene044396:CDS |
| AAAAGCCTGGGAGCTAAAGC+TGG | 0.477458 | 8.4:-18558607 | MS.gene044396:CDS |
| CAACTCCAGCTTTAGCTCCC+AGG | 0.485580 | 8.4:+18558602 | None:intergenic |
| AAGTTGGCGGAAAGAATAGA+TGG | 0.490752 | 8.4:+18559428 | None:intergenic |
| TGCACGATGCAAATGGATAG+TGG | 0.498424 | 8.4:+18558955 | None:intergenic |
| AAAGTCCATTGATCTGAGAT+TGG | 0.502632 | 8.4:+18560249 | None:intergenic |
| GTGCCAGATTTCATCAAAGC+AGG | 0.505243 | 8.4:-18559013 | MS.gene044396:CDS |
| ACCCTCCAATCTCAGATCAA+TGG | 0.506335 | 8.4:-18560254 | MS.gene044396:CDS |
| GCACCTTGTAAGCATTTGCT+GGG | 0.508474 | 8.4:+18557582 | None:intergenic |
| TATTACTATTGGACCTCTTG+TGG | 0.513189 | 8.4:-18559188 | MS.gene044396:CDS |
| ACATATTCTATTGCACTTAG+CGG | 0.514934 | 8.4:+18558562 | None:intergenic |
| TTTACCTTTGGATGTCCACC+TGG | 0.515412 | 8.4:-18559140 | MS.gene044396:intron |
| TCCAAAGGTAAATCTGTCAC+AGG | 0.515740 | 8.4:+18559151 | None:intergenic |
| TGTTATTTGGCAGGTGATTG+AGG | 0.527723 | 8.4:-18557210 | MS.gene044396:intron |
| CTTGGCTCTCGATAAAACTC+TGG | 0.531835 | 8.4:+18557784 | None:intergenic |
| ACCTTGAGAAAGTGAGAGAA+CGG | 0.535225 | 8.4:+18560198 | None:intergenic |
| CCCGTTCTCTCACTTTCTCA+AGG | 0.536451 | 8.4:-18560199 | MS.gene044396:intron |
| CCTTGGATTGAAGTGGATGG+TGG | 0.541023 | 8.4:-18557611 | MS.gene044396:CDS |
| CTTGGATTGAAGTGGATGGT+GGG | 0.541584 | 8.4:-18557610 | MS.gene044396:CDS |
| TACCCCAGCAAATGCTTACA+AGG | 0.545343 | 8.4:-18557585 | MS.gene044396:intron |
| AGAAAGTGAGAGAACGGGGA+TGG | 0.550196 | 8.4:+18560204 | None:intergenic |
| CTAGGTAAAAGCAGTAGAGT+TGG | 0.552705 | 8.4:-18559263 | MS.gene044396:intron |
| GATTGTAGAACCAGATCAGC+GGG | 0.553131 | 8.4:-18559035 | MS.gene044396:CDS |
| GTAAAAGCAGTAGAGTTGGC+TGG | 0.557874 | 8.4:-18559259 | MS.gene044396:CDS |
| TCCATTGATCTGAGATTGGA+GGG | 0.561639 | 8.4:+18560253 | None:intergenic |
| GGAGCTAAAGATTATGCTGA+AGG | 0.567422 | 8.4:-18557149 | MS.gene044396:intron |
| TTAATTATGTCTGTAAACCC+TGG | 0.567653 | 8.4:-18557816 | MS.gene044396:CDS |
| ATTCATGTTGATGTTATGGA+TGG | 0.568834 | 8.4:-18559226 | MS.gene044396:CDS |
| GGAAGAGAGAATTCTTGTGA+AGG | 0.574241 | 8.4:+18560225 | None:intergenic |
| AACTCTGGCCACCAAAGCCA+GGG | 0.576163 | 8.4:+18557799 | None:intergenic |
| GATCTGAGATTGGAGGGTAG+AGG | 0.576309 | 8.4:+18560259 | None:intergenic |
| CGCAATGCATCAACCACAAG+AGG | 0.585518 | 8.4:+18559175 | None:intergenic |
| TTTCACACAGAAACTGGCTC+AGG | 0.586572 | 8.4:+18556995 | None:intergenic |
| CCACCATCCACTTCAATCCA+AGG | 0.590960 | 8.4:+18557611 | None:intergenic |
| AATACCAGGTGGACATCCAA+AGG | 0.598223 | 8.4:+18559136 | None:intergenic |
| GAAGAGAGAATTCTTGTGAA+GGG | 0.599383 | 8.4:+18560226 | None:intergenic |
| TGAGGCTGGAGCTAATGCAC+TGG | 0.611831 | 8.4:-18557192 | MS.gene044396:CDS |
| GTCCATTGATCTGAGATTGG+AGG | 0.614275 | 8.4:+18560252 | None:intergenic |
| TGTGAATCCTTGGATTGAAG+TGG | 0.621250 | 8.4:-18557618 | MS.gene044396:CDS |
| CAGGAGGAAAATTTCAACTG+TGG | 0.630527 | 8.4:-18559504 | MS.gene044396:CDS |
| GCTGGAGTTGTCCTAAACCC+TGG | 0.635850 | 8.4:-18558589 | MS.gene044396:CDS |
| TTGGATTGAAGTGGATGGTG+GGG | 0.646043 | 8.4:-18557609 | MS.gene044396:CDS |
| CTTGAGAAAGTGAGAGAACG+GGG | 0.647983 | 8.4:+18560200 | None:intergenic |
| AATCCTTGGATTGAAGTGGA+TGG | 0.661026 | 8.4:-18557614 | MS.gene044396:CDS |
| CCAAAGGTAAATCTGTCACA+GGG | 0.662632 | 8.4:+18559152 | None:intergenic |
| TGATTTGAGAAGATTGTGCG+TGG | 0.667135 | 8.4:-18557748 | MS.gene044396:CDS |
| CACCTTGTAAGCATTTGCTG+GGG | 0.672494 | 8.4:+18557583 | None:intergenic |
| TTGCACTTAGCGGAGTACCA+GGG | 0.677738 | 8.4:+18558572 | None:intergenic |
| TGATTGTAGAACCAGATCAG+CGG | 0.686244 | 8.4:-18559036 | MS.gene044396:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATCTTATAATCTTATTA+TGG | - | chr8.4:18559425-18559444 | MS.gene044396:CDS | 10.0% |
| !! | TATTATATACTGAAAATAAA+CGG | + | chr8.4:18558796-18558815 | None:intergenic | 10.0% |
| !! | AACAATAAAAATTTAACACA+TGG | + | chr8.4:18558905-18558924 | None:intergenic | 15.0% |
| !! | AATTATAAACAGAATAGAAA+AGG | - | chr8.4:18559004-18559023 | MS.gene044396:CDS | 15.0% |
| !! | ACTATCTCATAAAAAAAAAA+TGG | + | chr8.4:18559581-18559600 | None:intergenic | 15.0% |
| !! | ATTATATACTGAAAATAAAC+GGG | + | chr8.4:18558795-18558814 | None:intergenic | 15.0% |
| !! | TTAATATTTAAGAGTTCTAT+TGG | - | chr8.4:18559900-18559919 | MS.gene044396:intron | 15.0% |
| !! | TTTAAAAGTTAAATATGTCT+TGG | - | chr8.4:18558557-18558576 | MS.gene044396:CDS | 15.0% |
| !!! | AATATTAATGATGCTATTTA+TGG | - | chr8.4:18558818-18558837 | MS.gene044396:intron | 15.0% |
| !!! | AATTAGCTTAATTTCAAATT+TGG | - | chr8.4:18559280-18559299 | MS.gene044396:intron | 15.0% |
| !!! | ATTTTCAGTATTATGTTATT+TGG | - | chr8.4:18560064-18560083 | MS.gene044396:intron | 15.0% |
| !!! | ATTTTTTTTTTATGAGATAG+TGG | - | chr8.4:18559580-18559599 | MS.gene044396:intron | 15.0% |
| !! | AAAGATTAAATTATGTGAGT+AGG | - | chr8.4:18560171-18560190 | MS.gene044396:intron | 20.0% |
| !! | AAATATAAAATGATTCTACG+AGG | + | chr8.4:18557613-18557632 | None:intergenic | 20.0% |
| !! | AAATGAATTCAAAAAGGAAA+AGG | + | chr8.4:18558764-18558783 | None:intergenic | 20.0% |
| !! | AACAATAATTGAAAAGAAAG+AGG | + | chr8.4:18557118-18557137 | None:intergenic | 20.0% |
| !! | CAGAAAAAATGAATTCAAAA+AGG | + | chr8.4:18558770-18558789 | None:intergenic | 20.0% |
| !! | TAACAAAAAGATATTAAAGC+AGG | + | chr8.4:18557754-18557773 | None:intergenic | 20.0% |
| !! | TCATTCTAAATTATAAGTGA+TGG | + | chr8.4:18559754-18559773 | None:intergenic | 20.0% |
| !! | TGTATTTGACAATTATACAA+AGG | + | chr8.4:18558483-18558502 | None:intergenic | 20.0% |
| !! | TTATATACTGAAAATAAACG+GGG | + | chr8.4:18558794-18558813 | None:intergenic | 20.0% |
| !!! | AATCAGAAATTTTCTTTACT+TGG | + | chr8.4:18559524-18559543 | None:intergenic | 20.0% |
| !!! | TTACCAATATTTTTAGAACA+TGG | + | chr8.4:18558976-18558995 | None:intergenic | 20.0% |
| ! | AATTCAATGAACAAAGTTTG+TGG | + | chr8.4:18559987-18560006 | None:intergenic | 25.0% |
| ! | AATTTGAAAAGTCAAACATC+TGG | - | chr8.4:18559191-18559210 | MS.gene044396:CDS | 25.0% |
| ! | ACCAGAAACTAAAATGAATT+TGG | + | chr8.4:18559075-18559094 | None:intergenic | 25.0% |
| ! | AGAAATATGCTAAAATGACT+TGG | + | chr8.4:18557960-18557979 | None:intergenic | 25.0% |
| ! | ATAATCCCAACATAAAACAT+TGG | - | chr8.4:18559840-18559859 | MS.gene044396:intron | 25.0% |
| ! | ATTGTTAGAATTCAACTTCT+GGG | - | chr8.4:18557132-18557151 | MS.gene044396:intron | 25.0% |
| ! | CAGTAGTAAACAAATAATGA+AGG | - | chr8.4:18559957-18559976 | MS.gene044396:intron | 25.0% |
| ! | CTAAGTACTAACATTAGTAA+AGG | - | chr8.4:18558583-18558602 | MS.gene044396:CDS | 25.0% |
| ! | CTGATTAAGTTTCTTGATTT+AGG | - | chr8.4:18558655-18558674 | MS.gene044396:intron | 25.0% |
| ! | CTTAATCAGATAAATTCAAC+AGG | + | chr8.4:18558644-18558663 | None:intergenic | 25.0% |
| ! | TAATCCCAACATAAAACATT+GGG | - | chr8.4:18559841-18559860 | MS.gene044396:intron | 25.0% |
| ! | TATGTATAAAGATGAATACC+AGG | + | chr8.4:18558168-18558187 | None:intergenic | 25.0% |
| ! | TATTGTTAGAATTCAACTTC+TGG | - | chr8.4:18557131-18557150 | MS.gene044396:intron | 25.0% |
| ! | TTATAATCTTATTATGGTGC+TGG | - | chr8.4:18559431-18559450 | MS.gene044396:CDS | 25.0% |
| ! | TTCCTTACATAATCTCTAAT+TGG | - | chr8.4:18559629-18559648 | MS.gene044396:intron | 25.0% |
| ! | TTTGTCCCAAATATTACTAT+TGG | - | chr8.4:18558088-18558107 | MS.gene044396:intron | 25.0% |
| !! | AGAATTAGCTAATTTGAAGT+TGG | + | chr8.4:18557342-18557361 | None:intergenic | 25.0% |
| !! | TATTCCTTTTATAGCTACAA+AGG | + | chr8.4:18560257-18560276 | None:intergenic | 25.0% |
| !!! | ACCAAATTCATTTTAGTTTC+TGG | - | chr8.4:18559071-18559090 | MS.gene044396:intron | 25.0% |
| !!! | GTTCCATGTTCTAAAAATAT+TGG | - | chr8.4:18558970-18558989 | MS.gene044396:CDS | 25.0% |
| !!! | GTTTGACTTTTCAAATTTTG+TGG | + | chr8.4:18559188-18559207 | None:intergenic | 25.0% |
| AACTCTTAGTTTACCGATAT+TGG | + | chr8.4:18558873-18558892 | None:intergenic | 30.0% | |
| ACATATTCTATTGCACTTAG+CGG | + | chr8.4:18558728-18558747 | None:intergenic | 30.0% | |
| AGAGGTCCAATAGTAATATT+TGG | + | chr8.4:18558097-18558116 | None:intergenic | 30.0% | |
| AGATAACAAGTAGTAAAACC+AGG | + | chr8.4:18557426-18557445 | None:intergenic | 30.0% | |
| ATACACATCCATATATGTGA+TGG | + | chr8.4:18558535-18558554 | None:intergenic | 30.0% | |
| ATCACATATATGGATGTGTA+TGG | - | chr8.4:18558534-18558553 | MS.gene044396:intron | 30.0% | |
| ATCGTGCAATTAATCAAGTA+AGG | - | chr8.4:18558347-18558366 | MS.gene044396:intron | 30.0% | |
| ATTATGTAAGGAATAAGAGC+CGG | + | chr8.4:18559622-18559641 | None:intergenic | 30.0% | |
| ATTCATGTTGATGTTATGGA+TGG | - | chr8.4:18558061-18558080 | MS.gene044396:intron | 30.0% | |
| CAAAGGCTTGAATATATGTT+TGG | + | chr8.4:18558466-18558485 | None:intergenic | 30.0% | |
| CACAAAAAAACCAAGTTGTA+AGG | + | chr8.4:18557449-18557468 | None:intergenic | 30.0% | |
| CATTCCTTTGTAGCTATAAA+AGG | - | chr8.4:18560250-18560269 | MS.gene044396:CDS | 30.0% | |
| GAAAATTTCAACTGTGGTTA+AGG | - | chr8.4:18557789-18557808 | MS.gene044396:CDS | 30.0% | |
| GACATTCATAGAATATTCAG+TGG | + | chr8.4:18559166-18559185 | None:intergenic | 30.0% | |
| GACCAATTAGAGATTATGTA+AGG | + | chr8.4:18559634-18559653 | None:intergenic | 30.0% | |
| GAGGTCCAATAGTAATATTT+GGG | + | chr8.4:18558096-18558115 | None:intergenic | 30.0% | |
| GATTAAATTATGTGAGTAGG+AGG | - | chr8.4:18560174-18560193 | MS.gene044396:intron | 30.0% | |
| GCAATAGAATATGTTCTTGA+TGG | - | chr8.4:18558734-18558753 | MS.gene044396:intron | 30.0% | |
| TCACAATTCACAGTAAATCT+AGG | + | chr8.4:18557637-18557656 | None:intergenic | 30.0% | |
| TCTATGTGCAAATTCTATGA+AGG | - | chr8.4:18557489-18557508 | MS.gene044396:intron | 30.0% | |
| TGTGATTCTGATATTTGTCA+TGG | - | chr8.4:18560223-18560242 | MS.gene044396:CDS | 30.0% | |
| TTAATTATGTCTGTAAACCC+TGG | - | chr8.4:18559471-18559490 | MS.gene044396:CDS | 30.0% | |
| TTGATTTAGGTAAAAAGCCT+GGG | - | chr8.4:18558668-18558687 | MS.gene044396:intron | 30.0% | |
| TTGGATTCATGTTGATGTTA+TGG | - | chr8.4:18558057-18558076 | MS.gene044396:intron | 30.0% | |
| ! | AATGATGCTATTTATGGCTT+AGG | - | chr8.4:18558824-18558843 | MS.gene044396:intron | 30.0% |
| ! | CTTTTATAGCTACAAAGGAA+TGG | + | chr8.4:18560252-18560271 | None:intergenic | 30.0% |
| ! | GTTTCCCAATGTTTTATGTT+GGG | + | chr8.4:18559848-18559867 | None:intergenic | 30.0% |
| ! | TCAGTATTATGTTATTTGGC+AGG | - | chr8.4:18560068-18560087 | MS.gene044396:intron | 30.0% |
| ! | TGTTTCCCAATGTTTTATGT+TGG | + | chr8.4:18559849-18559868 | None:intergenic | 30.0% |
| !!! | CTTTTTGTTATTGTGAACTC+AGG | - | chr8.4:18557764-18557783 | MS.gene044396:CDS | 30.0% |
| !!! | TACAACTTGGTTTTTTTGTG+AGG | - | chr8.4:18557449-18557468 | MS.gene044396:intron | 30.0% |
| AAGCCTTCTCTAACAAATTC+GGG | + | chr8.4:18557707-18557726 | None:intergenic | 35.0% | |
| ACCTTGACTTTCATCATCAT+AGG | + | chr8.4:18559310-18559329 | None:intergenic | 35.0% | |
| AGAACTCCAACAGTTATGAT+TGG | + | chr8.4:18557991-18558010 | None:intergenic | 35.0% | |
| ATTAGACCCTACAACTCAAA+CGG | + | chr8.4:18560046-18560065 | None:intergenic | 35.0% | |
| ATTCAACAGGAAACTGAAAC+TGG | + | chr8.4:18558631-18558650 | None:intergenic | 35.0% | |
| ATTCGAAAGCTCTTGAACAA+GGG | - | chr8.4:18557310-18557329 | MS.gene044396:intron | 35.0% | |
| CAAGCCTTCTCTAACAAATT+CGG | + | chr8.4:18557708-18557727 | None:intergenic | 35.0% | |
| CAGAATAGAAAAGGTTCGTT+TGG | - | chr8.4:18559013-18559032 | MS.gene044396:CDS | 35.0% | |
| CCTTGACTTTCATCATCATA+GGG | + | chr8.4:18559309-18559328 | None:intergenic | 35.0% | |
| CTTGACTTTCATCATCATAG+GGG | + | chr8.4:18559308-18559327 | None:intergenic | 35.0% | |
| CTTGATTTAGGTAAAAAGCC+TGG | - | chr8.4:18558667-18558686 | MS.gene044396:intron | 35.0% | |
| GAAGAGAGAATTCTTGTGAA+GGG | + | chr8.4:18557064-18557083 | None:intergenic | 35.0% | |
| GATTAATTGCACGATGCAAA+TGG | + | chr8.4:18558342-18558361 | None:intergenic | 35.0% | |
| GCTTATGTGGTTACCAATAT+CGG | - | chr8.4:18558857-18558876 | MS.gene044396:intron | 35.0% | |
| GTATAAAGATGAATACCAGG+TGG | + | chr8.4:18558165-18558184 | None:intergenic | 35.0% | |
| TAAAATGATTCTACGAGGAG+TGG | + | chr8.4:18557608-18557627 | None:intergenic | 35.0% | |
| TACGTGACATAGAAAACCAT+AGG | - | chr8.4:18560018-18560037 | MS.gene044396:intron | 35.0% | |
| TATTACTATTGGACCTCTTG+TGG | - | chr8.4:18558099-18558118 | MS.gene044396:intron | 35.0% | |
| TGCAGTAACCATCACATATA+TGG | - | chr8.4:18558524-18558543 | MS.gene044396:intron | 35.0% | |
| TGGTAACCACATAAGCATAT+GGG | + | chr8.4:18558853-18558872 | None:intergenic | 35.0% | |
| TTATGTAAGGAATAAGAGCC+GGG | + | chr8.4:18559621-18559640 | None:intergenic | 35.0% | |
| TTGGAGTTCTTGTGTTATCT+TGG | - | chr8.4:18558001-18558020 | MS.gene044396:intron | 35.0% | |
| TTGGGATTATCCTCTTGAAA+AGG | + | chr8.4:18559830-18559849 | None:intergenic | 35.0% | |
| TTGTCACCAATCATAACTGT+TGG | - | chr8.4:18557982-18558001 | MS.gene044396:intron | 35.0% | |
| ! | AAAGTCCATTGATCTGAGAT+TGG | + | chr8.4:18557041-18557060 | None:intergenic | 35.0% |
| ! | CTTGTTATCTCCTTACAACT+TGG | - | chr8.4:18557436-18557455 | MS.gene044396:intron | 35.0% |
| ! | GCATTGTCAACTTTTTAACC+TGG | - | chr8.4:18557405-18557424 | MS.gene044396:intron | 35.0% |
| ! | TTCTCCCAATTTTGCAAAGT+TGG | + | chr8.4:18557878-18557897 | None:intergenic | 35.0% |
| ! | TTGGTAACCACATAAGCATA+TGG | + | chr8.4:18558854-18558873 | None:intergenic | 35.0% |
| !! | AATTTGTTAGAGAAGGCTTG+TGG | - | chr8.4:18557708-18557727 | MS.gene044396:intron | 35.0% |
| !! | AGTTTCTGGTGAATTACACT+TGG | - | chr8.4:18559085-18559104 | MS.gene044396:intron | 35.0% |
| !! | ATGTTAACTTGTTCTGCGTA+AGG | - | chr8.4:18557222-18557241 | MS.gene044396:intron | 35.0% |
| !! | TCAATGATTGCCTTTTCAAG+AGG | - | chr8.4:18559817-18559836 | MS.gene044396:intron | 35.0% |
| !! | TGAGCAAAAAAAGAAGCACT+TGG | + | chr8.4:18559926-18559945 | None:intergenic | 35.0% |
| !! | TTTGTTATTGTGAACTCAGG+AGG | - | chr8.4:18557767-18557786 | MS.gene044396:CDS | 35.0% |
| !!! | ACTTGGTTTTTTTGTGAGGT+TGG | - | chr8.4:18557453-18557472 | MS.gene044396:intron | 35.0% |
| AAGTTGGCGGAAAGAATAGA+TGG | + | chr8.4:18557862-18557881 | None:intergenic | 40.0% | |
| AATCCTTGGATTGAAGTGGA+TGG | - | chr8.4:18559673-18559692 | MS.gene044396:intron | 40.0% | |
| ACCTTGAGAAAGTGAGAGAA+CGG | + | chr8.4:18557092-18557111 | None:intergenic | 40.0% | |
| AGGTTTCCCATATGCTTATG+TGG | - | chr8.4:18558844-18558863 | MS.gene044396:intron | 40.0% | |
| CAGGAGGAAAATTTCAACTG+TGG | - | chr8.4:18557783-18557802 | MS.gene044396:CDS | 40.0% | |
| CCAAAGGTAAATCTGTCACA+GGG | + | chr8.4:18558138-18558157 | None:intergenic | 40.0% | |
| CTAGGTAAAAGCAGTAGAGT+TGG | - | chr8.4:18558024-18558043 | MS.gene044396:intron | 40.0% | |
| CTGCATTCTTGACAAGATTC+TGG | + | chr8.4:18558509-18558528 | None:intergenic | 40.0% | |
| CTTTGCAAAATTGGGAGAAC+AGG | - | chr8.4:18557879-18557898 | MS.gene044396:intron | 40.0% | |
| GATTCGAAAGCTCTTGAACA+AGG | - | chr8.4:18557309-18557328 | MS.gene044396:intron | 40.0% | |
| GGAAGAGAGAATTCTTGTGA+AGG | + | chr8.4:18557065-18557084 | None:intergenic | 40.0% | |
| GGAGCTAAAGATTATGCTGA+AGG | - | chr8.4:18560138-18560157 | MS.gene044396:intron | 40.0% | |
| GTTCTTGTGTTATCTTGGCT+AGG | - | chr8.4:18558006-18558025 | MS.gene044396:intron | 40.0% | |
| TACAACTCAAACGGATCCTA+TGG | + | chr8.4:18560037-18560056 | None:intergenic | 40.0% | |
| TATGTAAGGAATAAGAGCCG+GGG | + | chr8.4:18559620-18559639 | None:intergenic | 40.0% | |
| TCCAAAGGTAAATCTGTCAC+AGG | + | chr8.4:18558139-18558158 | None:intergenic | 40.0% | |
| TCCGCCAACTTTGCAAAATT+GGG | - | chr8.4:18557871-18557890 | MS.gene044396:intron | 40.0% | |
| TGATTGTAGAACCAGATCAG+CGG | - | chr8.4:18558251-18558270 | MS.gene044396:intron | 40.0% | |
| TGATTTGAGAAGATTGTGCG+TGG | - | chr8.4:18559539-18559558 | MS.gene044396:intron | 40.0% | |
| TGTGAATCCTTGGATTGAAG+TGG | - | chr8.4:18559669-18559688 | MS.gene044396:intron | 40.0% | |
| TTCCGCCAACTTTGCAAAAT+TGG | - | chr8.4:18557870-18557889 | MS.gene044396:intron | 40.0% | |
| ! | AATTGGTCTCTCTCTCTCTA+GGG | - | chr8.4:18559646-18559665 | MS.gene044396:intron | 40.0% |
| ! | CCCTATGATGATGAAAGTCA+AGG | - | chr8.4:18559306-18559325 | MS.gene044396:intron | 40.0% |
| ! | TAATTGGTCTCTCTCTCTCT+AGG | - | chr8.4:18559645-18559664 | MS.gene044396:intron | 40.0% |
| ! | TCCATTGATCTGAGATTGGA+GGG | + | chr8.4:18557037-18557056 | None:intergenic | 40.0% |
| ! | TCCCAATTTTGCAAAGTTGG+CGG | + | chr8.4:18557875-18557894 | None:intergenic | 40.0% |
| ! | TGTTATTTGGCAGGTGATTG+AGG | - | chr8.4:18560077-18560096 | MS.gene044396:intron | 40.0% |
| !! | ACACCCGAATTTGTTAGAGA+AGG | - | chr8.4:18557701-18557720 | MS.gene044396:intron | 40.0% |
| !! | ATAGGATCCGTTTGAGTTGT+AGG | - | chr8.4:18560036-18560055 | MS.gene044396:intron | 40.0% |
| !! | TAGGATCCGTTTGAGTTGTA+GGG | - | chr8.4:18560037-18560056 | MS.gene044396:intron | 40.0% |
| AATACCAGGTGGACATCCAA+AGG | + | chr8.4:18558154-18558173 | None:intergenic | 45.0% | |
| ACAGGAAACTGAAACTGGAG+TGG | + | chr8.4:18558626-18558645 | None:intergenic | 45.0% | |
| ACCCTCCAATCTCAGATCAA+TGG | - | chr8.4:18557033-18557052 | MS.gene044396:intron | 45.0% | |
| AGCACCTTGTAAGCATTTGC+TGG | + | chr8.4:18559709-18559728 | None:intergenic | 45.0% | |
| ATGTAAGGAATAAGAGCCGG+GGG | + | chr8.4:18559619-18559638 | None:intergenic | 45.0% | |
| ATGTCTGTAAACCCTGGCTT+TGG | - | chr8.4:18559477-18559496 | MS.gene044396:CDS | 45.0% | |
| CCCTGTGACAGATTTACCTT+TGG | - | chr8.4:18558135-18558154 | MS.gene044396:intron | 45.0% | |
| CCTTGAGAAAGTGAGAGAAC+GGG | + | chr8.4:18557091-18557110 | None:intergenic | 45.0% | |
| CTTGAGAAAGTGAGAGAACG+GGG | + | chr8.4:18557090-18557109 | None:intergenic | 45.0% | |
| CTTGGATTGAAGTGGATGGT+GGG | - | chr8.4:18559677-18559696 | MS.gene044396:intron | 45.0% | |
| GAAAGCTCTTGAACAAGGGA+AGG | - | chr8.4:18557314-18557333 | MS.gene044396:intron | 45.0% | |
| GATTGTAGAACCAGATCAGC+GGG | - | chr8.4:18558252-18558271 | MS.gene044396:intron | 45.0% | |
| GCACCTTGTAAGCATTTGCT+GGG | + | chr8.4:18559708-18559727 | None:intergenic | 45.0% | |
| GCTCCTGCTTTGATGAAATC+TGG | + | chr8.4:18558280-18558299 | None:intergenic | 45.0% | |
| GTAAAAGCAGTAGAGTTGGC+TGG | - | chr8.4:18558028-18558047 | MS.gene044396:intron | 45.0% | |
| GTGCCAGATTTCATCAAAGC+AGG | - | chr8.4:18558274-18558293 | MS.gene044396:intron | 45.0% | |
| TACCCCAGCAAATGCTTACA+AGG | - | chr8.4:18559702-18559721 | MS.gene044396:intron | 45.0% | |
| TGCACGATGCAAATGGATAG+TGG | + | chr8.4:18558335-18558354 | None:intergenic | 45.0% | |
| TTGGATTGAAGTGGATGGTG+GGG | - | chr8.4:18559678-18559697 | MS.gene044396:intron | 45.0% | |
| TTTACCTTTGGATGTCCACC+TGG | - | chr8.4:18558147-18558166 | MS.gene044396:intron | 45.0% | |
| ! | CACCTTGTAAGCATTTGCTG+GGG | + | chr8.4:18559707-18559726 | None:intergenic | 45.0% |
| ! | CTTGGCTCTCGATAAAACTC+TGG | + | chr8.4:18559506-18559525 | None:intergenic | 45.0% |
| ! | GGAGGCATACATTGCAATAG+TGG | - | chr8.4:18560192-18560211 | MS.gene044396:intron | 45.0% |
| ! | GTCCATTGATCTGAGATTGG+AGG | + | chr8.4:18557038-18557057 | None:intergenic | 45.0% |
| ! | TAGAGTTGGCTGGTTGTGAT+TGG | - | chr8.4:18558038-18558057 | MS.gene044396:intron | 45.0% |
| ! | TGGATTTTGTGTTTTCCCCC+CGG | - | chr8.4:18559600-18559619 | MS.gene044396:intron | 45.0% |
| !! | TCTTATTATGGTGCTGGCAG+TGG | - | chr8.4:18559437-18559456 | MS.gene044396:CDS | 45.0% |
| AAAAGCCTGGGAGCTAAAGC+TGG | - | chr8.4:18558680-18558699 | MS.gene044396:intron | 50.0% | |
| AGAAAGTGAGAGAACGGGGA+TGG | + | chr8.4:18557086-18557105 | None:intergenic | 50.0% | |
| AGATTGTGCGTGGAGAAGGT+AGG | - | chr8.4:18559549-18559568 | MS.gene044396:intron | 50.0% | |
| ATTTGGCAGGTGATTGAGGC+TGG | - | chr8.4:18560081-18560100 | MS.gene044396:intron | 50.0% | |
| CCACCATCCACTTCAATCCA+AGG | + | chr8.4:18559679-18559698 | None:intergenic | 50.0% | |
| CCCGTTCTCTCACTTTCTCA+AGG | - | chr8.4:18557088-18557107 | MS.gene044396:intron | 50.0% | |
| CCTTGGATTGAAGTGGATGG+TGG | - | chr8.4:18559676-18559695 | MS.gene044396:intron | 50.0% | |
| CGCAATGCATCAACCACAAG+AGG | + | chr8.4:18558115-18558134 | None:intergenic | 50.0% | |
| GAGAAGATTGTGCGTGGAGA+AGG | - | chr8.4:18559545-18559564 | MS.gene044396:intron | 50.0% | |
| TGTAAGGAATAAGAGCCGGG+GGG | + | chr8.4:18559618-18559637 | None:intergenic | 50.0% | |
| ! | ATTGCACTTAGCGGAGTACC+AGG | + | chr8.4:18558719-18558738 | None:intergenic | 50.0% |
| ! | GATCTGAGATTGGAGGGTAG+AGG | + | chr8.4:18557031-18557050 | None:intergenic | 50.0% |
| ! | TTAGCGGAGTACCAGGGTTT+AGG | + | chr8.4:18558712-18558731 | None:intergenic | 50.0% |
| ! | TTGCACTTAGCGGAGTACCA+GGG | + | chr8.4:18558718-18558737 | None:intergenic | 50.0% |
| !! | CTCTCTAGGGTGTGAATCCT+TGG | - | chr8.4:18559659-18559678 | MS.gene044396:intron | 50.0% |
| !! | GTTGCTGGTTCTGCTGTGTT+TGG | - | chr8.4:18560117-18560136 | MS.gene044396:intron | 50.0% |
| !! | TCTGTAAACCCTGGCTTTGG+TGG | - | chr8.4:18559480-18559499 | MS.gene044396:CDS | 50.0% |
| AAACTCTGGCCACCAAAGCC+AGG | + | chr8.4:18559492-18559511 | None:intergenic | 55.0% | |
| AAATCTGGCACCCGCTGATC+TGG | + | chr8.4:18558265-18558284 | None:intergenic | 55.0% | |
| AACTCTGGCCACCAAAGCCA+GGG | + | chr8.4:18559491-18559510 | None:intergenic | 55.0% | |
| GCTGGAGTTGTCCTAAACCC+TGG | - | chr8.4:18558698-18558717 | MS.gene044396:intron | 55.0% | |
| TGAGGCTGGAGCTAATGCAC+TGG | - | chr8.4:18560095-18560114 | MS.gene044396:intron | 55.0% | |
| TGTGTGTGTGTGCGTGTGCA+AGG | + | chr8.4:18557684-18557703 | None:intergenic | 55.0% | |
| ! | CAACTCCAGCTTTAGCTCCC+AGG | + | chr8.4:18558688-18558707 | None:intergenic | 55.0% |
| !! | GGAGCTAATGCACTGGTTGC+TGG | - | chr8.4:18560102-18560121 | MS.gene044396:intron | 55.0% |
| !! | GGTGCTGGCAGTGGTTGACT+TGG | - | chr8.4:18559446-18559465 | MS.gene044396:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 18556997 | 18560312 | 18556997 | ID=MS.gene044396 |
| chr8.4 | mRNA | 18556997 | 18560312 | 18556997 | ID=MS.gene044396.t1;Parent=MS.gene044396 |
| chr8.4 | exon | 18560200 | 18560312 | 18560200 | ID=MS.gene044396.t1.exon1;Parent=MS.gene044396.t1 |
| chr8.4 | CDS | 18560200 | 18560312 | 18560200 | ID=cds.MS.gene044396.t1;Parent=MS.gene044396.t1 |
| chr8.4 | exon | 18559409 | 18559523 | 18559409 | ID=MS.gene044396.t1.exon2;Parent=MS.gene044396.t1 |
| chr8.4 | CDS | 18559409 | 18559523 | 18559409 | ID=cds.MS.gene044396.t1;Parent=MS.gene044396.t1 |
| chr8.4 | exon | 18559141 | 18559281 | 18559141 | ID=MS.gene044396.t1.exon3;Parent=MS.gene044396.t1 |
| chr8.4 | CDS | 18559141 | 18559281 | 18559141 | ID=cds.MS.gene044396.t1;Parent=MS.gene044396.t1 |
| chr8.4 | exon | 18558946 | 18559059 | 18558946 | ID=MS.gene044396.t1.exon4;Parent=MS.gene044396.t1 |
| chr8.4 | CDS | 18558946 | 18559059 | 18558946 | ID=cds.MS.gene044396.t1;Parent=MS.gene044396.t1 |
| chr8.4 | exon | 18558554 | 18558632 | 18558554 | ID=MS.gene044396.t1.exon5;Parent=MS.gene044396.t1 |
| chr8.4 | CDS | 18558554 | 18558632 | 18558554 | ID=cds.MS.gene044396.t1;Parent=MS.gene044396.t1 |
| chr8.4 | exon | 18557743 | 18557852 | 18557743 | ID=MS.gene044396.t1.exon6;Parent=MS.gene044396.t1 |
| chr8.4 | CDS | 18557743 | 18557852 | 18557743 | ID=cds.MS.gene044396.t1;Parent=MS.gene044396.t1 |
| chr8.4 | exon | 18557586 | 18557642 | 18557586 | ID=MS.gene044396.t1.exon7;Parent=MS.gene044396.t1 |
| chr8.4 | CDS | 18557586 | 18557642 | 18557586 | ID=cds.MS.gene044396.t1;Parent=MS.gene044396.t1 |
| chr8.4 | exon | 18557150 | 18557219 | 18557150 | ID=MS.gene044396.t1.exon8;Parent=MS.gene044396.t1 |
| chr8.4 | CDS | 18557150 | 18557219 | 18557150 | ID=cds.MS.gene044396.t1;Parent=MS.gene044396.t1 |
| chr8.4 | exon | 18556997 | 18557046 | 18556997 | ID=MS.gene044396.t1.exon9;Parent=MS.gene044396.t1 |
| chr8.4 | CDS | 18556997 | 18557046 | 18556997 | ID=cds.MS.gene044396.t1;Parent=MS.gene044396.t1 |
| Gene Sequence |
| Protein sequence |
