AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene045075

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene045075.t1 MTR_3g087940 99.449 363 2 0 1 363 1 363 0.0 751
MS.gene045075.t1 MTR_8g091650 68.839 353 102 4 12 363 13 358 2.14e-176 494
MS.gene045075.t1 MTR_8g091650 62.468 389 102 5 12 363 13 394 2.98e-169 478
MS.gene045075.t1 MTR_8g091650 72.281 285 78 1 79 363 2 285 9.27e-153 431
MS.gene045075.t1 MTR_8g040120 56.269 327 125 4 43 361 150 466 4.33e-117 347
MS.gene045075.t1 MTR_3g073560 49.713 348 170 2 14 359 1 345 5.34e-114 344
MS.gene045075.t1 MTR_5g060950 49.858 351 165 3 14 358 1 346 4.62e-113 333
MS.gene045075.t1 MTR_7g089800 58.667 300 111 3 70 361 129 423 7.85e-113 335
MS.gene045075.t1 MTR_7g089800 58.667 300 111 3 70 361 158 452 1.25e-112 335
MS.gene045075.t1 MTR_5g054900 55.556 306 124 3 64 361 52 353 3.01e-111 328
MS.gene045075.t1 MTR_5g054900 55.556 306 124 3 64 361 133 434 2.10e-110 329
MS.gene045075.t1 MTR_2g086420 54.795 292 120 4 73 361 187 469 8.43e-109 327
MS.gene045075.t1 MTR_2g086420 54.795 292 120 4 73 361 186 468 9.22e-109 327
MS.gene045075.t1 MTR_5g054900 54.575 306 123 4 64 361 52 349 9.69e-107 317
MS.gene045075.t1 MTR_5g054900 54.575 306 123 4 64 361 163 460 3.09e-105 317
MS.gene045075.t1 MTR_7g092750 50.321 312 148 2 57 361 51 362 6.36e-104 310
MS.gene045075.t1 MTR_4g053250 46.991 349 155 6 30 361 126 461 2.28e-103 313
MS.gene045075.t1 MTR_7g092750 50.321 312 148 2 57 361 152 463 8.61e-103 311
MS.gene045075.t1 MTR_1g111310 55.401 287 124 2 79 361 421 707 2.68e-101 314
MS.gene045075.t1 MTR_1g111310 53.929 280 119 2 79 355 54 326 7.15e-88 279
MS.gene045075.t1 MTR_7g092750 45.513 312 137 3 57 361 152 437 2.41e-88 273
MS.gene045075.t1 MTR_0126s0080 50.385 260 120 3 64 314 200 459 1.66e-78 249
MS.gene045075.t1 MTR_3g044820 57.229 166 60 3 79 235 45 208 8.86e-60 192
MS.gene045075.t1 MTR_1g090370 38.806 201 98 5 160 354 47 228 6.07e-34 125
MS.gene045075.t1 MTR_1g111320 60.000 70 27 1 79 147 146 215 1.15e-17 81.3
MS.gene045075.t1 MTR_8g094690 25.957 235 139 5 150 349 14 248 1.02e-15 76.6
MS.gene045075.t1 MTR_7g068860 24.651 215 152 5 147 351 5 219 1.63e-14 72.8
MS.gene045075.t1 MTR_2g076140 23.182 220 135 3 151 350 4 209 2.74e-12 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene045075.t1 AT5G65210 67.663 368 114 2 1 363 1 368 0.0 515
MS.gene045075.t1 AT5G65210 67.663 368 114 2 1 363 1 368 0.0 515
MS.gene045075.t1 AT5G65210 67.663 368 114 2 1 363 1 368 0.0 515
MS.gene045075.t1 AT5G65210 67.663 368 114 2 1 363 1 368 0.0 515
MS.gene045075.t1 AT5G65210 67.663 368 114 2 1 363 1 368 0.0 515
MS.gene045075.t1 AT5G65210 67.663 368 114 2 1 363 1 368 0.0 515
MS.gene045075.t1 AT5G10030 68.767 365 111 2 1 363 1 364 0.0 512
MS.gene045075.t1 AT5G10030 68.767 365 111 2 1 363 1 364 0.0 512
MS.gene045075.t1 AT5G10030 68.767 365 111 2 1 363 1 364 0.0 512
MS.gene045075.t1 AT5G10030 68.767 365 111 2 1 363 1 364 0.0 512
MS.gene045075.t1 AT5G10030 68.767 365 111 2 1 363 1 364 0.0 512
MS.gene045075.t1 AT5G65210 73.064 297 78 1 69 363 2 298 1.61e-160 452
MS.gene045075.t1 AT1G77920 56.764 377 136 7 2 363 4 368 8.56e-143 409
MS.gene045075.t1 AT1G22070 56.557 366 143 4 12 361 17 382 1.86e-135 391
MS.gene045075.t1 AT5G06950 59.516 289 107 2 79 361 46 330 2.08e-113 333
MS.gene045075.t1 AT5G06950 59.516 289 107 2 79 361 46 330 2.08e-113 333
MS.gene045075.t1 AT5G06950 59.516 289 107 2 79 361 46 330 2.08e-113 333
MS.gene045075.t1 AT5G06950 59.516 289 107 2 79 361 46 330 2.08e-113 333
MS.gene045075.t1 AT5G06950 59.516 289 107 2 79 361 46 330 2.08e-113 333
MS.gene045075.t1 AT3G12250 54.268 328 131 4 49 361 7 330 2.05e-112 331
MS.gene045075.t1 AT3G12250 54.268 328 131 4 49 361 7 330 2.05e-112 331
MS.gene045075.t1 AT3G12250 54.268 328 131 4 49 361 7 330 2.05e-112 331
MS.gene045075.t1 AT3G12250 54.268 328 131 4 49 361 7 330 2.05e-112 331
MS.gene045075.t1 AT3G12250 55.305 311 129 2 57 361 18 324 1.86e-111 328
MS.gene045075.t1 AT3G12250 57.191 299 114 3 73 361 9 303 3.44e-111 327
MS.gene045075.t1 AT5G06960 58.824 289 109 2 79 361 26 310 7.85e-111 326
MS.gene045075.t1 AT5G06960 58.824 289 109 2 79 361 46 330 9.28e-111 327
MS.gene045075.t1 AT5G06960 58.824 289 109 2 79 361 46 330 9.28e-111 327
MS.gene045075.t1 AT3G12250 55.305 311 129 2 57 361 49 355 1.33e-110 327
MS.gene045075.t1 AT1G08320 56.098 287 111 3 79 361 54 329 9.41e-110 325
MS.gene045075.t1 AT1G08320 56.098 287 111 3 79 361 54 329 9.41e-110 325
MS.gene045075.t1 AT1G08320 56.098 287 111 3 79 361 178 453 3.24e-108 325
MS.gene045075.t1 AT1G08320 56.098 287 111 3 79 361 178 453 3.24e-108 325
MS.gene045075.t1 AT1G08320 56.098 287 111 3 79 361 178 453 3.24e-108 325
MS.gene045075.t1 AT5G06839 49.538 325 147 4 52 361 93 415 4.51e-102 307
MS.gene045075.t1 AT5G06839 49.387 326 147 4 52 361 93 416 6.95e-102 307
MS.gene045075.t1 AT5G06839 52.685 298 126 3 79 361 161 458 1.09e-101 308
MS.gene045075.t1 AT1G68640 52.922 308 136 3 61 361 147 452 3.55e-99 301
MS.gene045075.t1 AT1G58330 26.126 222 151 4 143 351 2 223 1.02e-18 84.3
MS.gene045075.t1 AT3G14880 26.126 222 129 7 147 343 6 217 1.04e-12 67.4
MS.gene045075.t1 AT3G14880 25.328 229 129 7 147 343 6 224 7.65e-12 65.1

Find 84 sgRNAs with CRISPR-Local

Find 141 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCTCGATGTTTGCTTGCTT+TGG 0.213054 3.2:+74984094 MS.gene045075:CDS
TTGATTTAATTGCAGATTCT+TGG 0.226068 3.2:+74983492 MS.gene045075:intron
AAAACTGCAGGGAATGTATA+TGG 0.249625 3.2:+74982845 MS.gene045075:intron
CAAGTCCGCCTCATCAATTA+AGG 0.315142 3.2:-74982187 None:intergenic
TTCTCATTTCCGAGATTTGC+CGG 0.317139 3.2:-74983071 None:intergenic
GCAGCCTTTGAGATGGAGTA+TGG 0.346430 3.2:+74983027 MS.gene045075:CDS
GCTCGATGTTTGCTTGCTTT+GGG 0.348084 3.2:+74984095 MS.gene045075:CDS
CATGTTCTAACCTTATCAAT+AGG 0.384759 3.2:-74982385 None:intergenic
TCTGTCAATGGTTCAATCAT+TGG 0.390810 3.2:-74983516 None:intergenic
CATACTTGTTAGATGTTCCT+AGG 0.414801 3.2:-74982345 None:intergenic
GGCTCTTACGAGCAGCTTCT+CGG 0.427961 3.2:-74982531 None:intergenic
CTTCTCCCCACATATTAATC+TGG 0.429966 3.2:-74982128 None:intergenic
CACATATTAATCTGGTGAAT+AGG 0.436108 3.2:-74982120 None:intergenic
TTTAACAGGCTGACCATCTT+CGG 0.437689 3.2:+74984024 MS.gene045075:intron
CGCAGTTTGTTTCCTCGAGA+AGG 0.438704 3.2:+74982082 MS.gene045075:CDS
AACAAGACTAAGCAGGTTCT+CGG 0.440007 3.2:-74984169 None:intergenic
ATTGGGTTGATGAGCAAAAC+CGG 0.440031 3.2:+74983052 MS.gene045075:CDS
AATGTATATGGGTGGTGGGT+TGG 0.443309 3.2:+74982857 MS.gene045075:CDS
ACAAGACTAAGCAGGTTCTC+GGG 0.443620 3.2:-74984168 None:intergenic
CTTGAAGTTTGATAGTAGTC+AGG 0.454381 3.2:+74982206 MS.gene045075:CDS
TTCGATAGATTTCAGCATAG+TGG 0.456188 3.2:-74983155 None:intergenic
AATCGTTGTTGCTCTGTCAA+TGG 0.456266 3.2:-74983528 None:intergenic
TCTTGTGAGCTTTGTGAACC+AGG 0.458406 3.2:+74983713 MS.gene045075:CDS
AGCTCAAAGCCCTCAGGCGT+TGG 0.459290 3.2:-74984127 None:intergenic
GAGCTCAGGATGCTGGTTGA+TGG 0.463581 3.2:+74983123 MS.gene045075:CDS
TGAGATGGAGTATGGACATT+GGG 0.465713 3.2:+74983035 MS.gene045075:CDS
TGAGGGCTTTGAGCTCACTA+TGG 0.474812 3.2:+74984135 MS.gene045075:CDS
TCGTTTGAAGTTAGTGCAGT+TGG 0.476876 3.2:+74982687 MS.gene045075:CDS
TTTGCTGGACCTGTGAATCC+AGG 0.482156 3.2:+74982897 MS.gene045075:CDS
CGCCTCATCAATTAAGGGAA+TGG 0.487369 3.2:-74982181 None:intergenic
GTTTCTCCATGCCTTGTGAA+AGG 0.488025 3.2:-74983596 None:intergenic
GATGCTTCTCATGGTATCCT+AGG 0.490549 3.2:+74982328 MS.gene045075:CDS
GCAAGGTTTCCTGCCGAAGA+TGG 0.491320 3.2:-74984037 None:intergenic
TTTCTCCATGCCTTGTGAAA+GGG 0.491745 3.2:-74983595 None:intergenic
AGCTAATAGACCTATTGATA+AGG 0.501170 3.2:+74982375 MS.gene045075:CDS
CTCGCTGATAGCGTAGCAGC+TGG 0.502070 3.2:+74983630 MS.gene045075:CDS
CAGGGAATGTATATGGGTGG+TGG 0.504131 3.2:+74982852 MS.gene045075:intron
AAGTCCGCCTCATCAATTAA+GGG 0.508625 3.2:-74982186 None:intergenic
ATTGACAGAGCAACAACGAT+TGG 0.518816 3.2:+74983530 MS.gene045075:CDS
ACAAACCAACCTGGATTCAC+AGG 0.524884 3.2:-74982906 None:intergenic
TCGCCCTTCTGAGCTTCTCA+AGG 0.526161 3.2:+74983272 MS.gene045075:CDS
TGACATAGAGCTCAGGATGC+TGG 0.526532 3.2:+74983116 MS.gene045075:CDS
ACAGGCTGACCATCTTCGGC+AGG 0.532331 3.2:+74984028 MS.gene045075:intron
CAGATTAATATGTGGGGAGA+AGG 0.534968 3.2:+74982129 MS.gene045075:CDS
ATCACCTTGAGAAGCTCAGA+AGG 0.537726 3.2:-74983276 None:intergenic
TCCACAGATGGCTACTGCAA+TGG 0.537758 3.2:+74983677 MS.gene045075:CDS
AGAATATTTCCAACGCCTGA+GGG 0.537877 3.2:+74984118 MS.gene045075:CDS
AGGAATTGCAGCCTTTGAGA+TGG 0.538267 3.2:+74983020 MS.gene045075:intron
AAACTGCAGGGAATGTATAT+GGG 0.538541 3.2:+74982846 MS.gene045075:intron
TGAGCAAAACCGGCAAATCT+CGG 0.539595 3.2:+74983062 MS.gene045075:CDS
AGATGCCCTTTCACAAGGCA+TGG 0.540096 3.2:+74983590 MS.gene045075:CDS
GCTCGAACGTGTTAGACAGC+AGG 0.550918 3.2:+74982717 MS.gene045075:CDS
TATTCACCAGATTAATATGT+GGG 0.557449 3.2:+74982122 MS.gene045075:CDS
TGTTCGCGACATTTGTTGCA+AGG 0.557667 3.2:-74984054 None:intergenic
TTGAGATGGAGTATGGACAT+TGG 0.559206 3.2:+74983034 MS.gene045075:CDS
CTATTCACCAGATTAATATG+TGG 0.559375 3.2:+74982121 MS.gene045075:CDS
ATAGTGAGCTCAAAGCCCTC+AGG 0.562814 3.2:-74984133 None:intergenic
GCAGCTGGACAATTCATTGA+AGG 0.563520 3.2:+74983645 MS.gene045075:CDS
GAGGAAACAAACTGCGCGGA+CGG 0.566214 3.2:-74982075 None:intergenic
AGGGAATGTATATGGGTGGT+GGG 0.568452 3.2:+74982853 MS.gene045075:intron
GAGAATATTTCCAACGCCTG+AGG 0.568747 3.2:+74984117 MS.gene045075:CDS
GGAGAAGGCTTCAAAAGTAA+TGG 0.571903 3.2:+74982144 MS.gene045075:CDS
CTTGTTGACATGATTGTCCA+AGG 0.580404 3.2:-74983563 None:intergenic
TCCATTGCAGTAGCCATCTG+TGG 0.581181 3.2:-74983678 None:intergenic
ATCCATTCCCTTAATTGATG+AGG 0.582525 3.2:+74982179 MS.gene045075:CDS
TAGTCAGAGGATGCTTCTCA+TGG 0.584672 3.2:+74982319 MS.gene045075:intron
CGATTGGATATCGATAACCT+TGG 0.584683 3.2:+74983546 MS.gene045075:CDS
AGGAACTTATATTCCACAGA+TGG 0.586141 3.2:+74983665 MS.gene045075:CDS
CATTCCCTTAATTGATGAGG+CGG 0.591538 3.2:+74982182 MS.gene045075:CDS
GTATTAGTGACATAGAGCTC+AGG 0.591773 3.2:+74983109 MS.gene045075:CDS
GCAGAAGATGCCCTTTCACA+AGG 0.607214 3.2:+74983585 MS.gene045075:CDS
GTCTTGCAACAAGACTAAGC+AGG 0.618652 3.2:-74984176 None:intergenic
CAAGACTAAGCAGGTTCTCG+GGG 0.624393 3.2:-74984167 None:intergenic
GCAAACATCGAGCTGACTGA+CGG 0.633030 3.2:-74984085 None:intergenic
GATTAAATATGCAGATACAA+AGG 0.638966 3.2:+74982494 MS.gene045075:intron
ATGTCCATACTCCATCTCAA+AGG 0.641308 3.2:-74983031 None:intergenic
TTTATGTGATGTCCGGCATG+TGG 0.642596 3.2:+74983208 MS.gene045075:CDS
ATACACACTCATCCTTCTCG+AGG 0.650671 3.2:-74982094 None:intergenic
CACAAGGCATGGAGAAACTG+CGG 0.659798 3.2:+74983601 MS.gene045075:CDS
TCACCTTGAGAAGCTCAGAA+GGG 0.664994 3.2:-74983275 None:intergenic
CTGCAGGGAATGTATATGGG+TGG 0.681880 3.2:+74982849 MS.gene045075:intron
ATTCACCAGATTAATATGTG+GGG 0.681960 3.2:+74982123 MS.gene045075:CDS
GTCCGGCATGTGGAAAACAA+CGG 0.755517 3.2:+74983218 MS.gene045075:CDS
TCTCGAGGAAACAAACTGCG+CGG 0.772945 3.2:-74982079 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTATTAAATTGAAAAGTAA+TGG - chr3.2:74983763-74983782 None:intergenic 10.0%
!! TTTAATTCCATATTCAATTA+TGG + chr3.2:74983429-74983448 MS.gene045075:intron 15.0%
!!! GTATATGTTTATTTTATAAC+CGG + chr3.2:74983915-74983934 MS.gene045075:intron 15.0%
!!! TATATGTTTATTTTATAACC+GGG + chr3.2:74983916-74983935 MS.gene045075:intron 15.0%
!! AAATTTATAATGTAGTATGG+TGG + chr3.2:74983458-74983477 MS.gene045075:intron 20.0%
!! AGTTAAATATGTGATTCTAA+TGG - chr3.2:74983994-74984013 None:intergenic 20.0%
!! GACAAATTTATAATGTAGTA+TGG + chr3.2:74983455-74983474 MS.gene045075:intron 20.0%
!! TATAAAACATGAATCCAATT+TGG - chr3.2:74982294-74982313 None:intergenic 20.0%
! AAACATACATGATTTGATCA+CGG - chr3.2:74983879-74983898 None:intergenic 25.0%
! ATTCTGCTTATTAACCAAAT+TGG + chr3.2:74982277-74982296 MS.gene045075:intron 25.0%
! GAACATGAAGAATTTGTATT+CGG + chr3.2:74982401-74982420 MS.gene045075:intron 25.0%
! GATAATAAGTTAGTGACAAA+TGG - chr3.2:74983837-74983856 None:intergenic 25.0%
! GATTAAATATGCAGATACAA+AGG + chr3.2:74982494-74982513 MS.gene045075:intron 25.0%
! TATTCACCAGATTAATATGT+GGG + chr3.2:74982122-74982141 MS.gene045075:CDS 25.0%
! TTGATTTAATTGCAGATTCT+TGG + chr3.2:74983492-74983511 MS.gene045075:intron 25.0%
!! TCTAATAATATGTGTTTTGC+TGG + chr3.2:74982882-74982901 MS.gene045075:CDS 25.0%
ACATCCAAAATTTGAAAGCA+TGG - chr3.2:74982451-74982470 None:intergenic 30.0%
AGCTAATAGACCTATTGATA+AGG + chr3.2:74982375-74982394 MS.gene045075:CDS 30.0%
ATTCACCAGATTAATATGTG+GGG + chr3.2:74982123-74982142 MS.gene045075:CDS 30.0%
CACATATTAATCTGGTGAAT+AGG - chr3.2:74982123-74982142 None:intergenic 30.0%
CATGTTCTAACCTTATCAAT+AGG - chr3.2:74982388-74982407 None:intergenic 30.0%
CTATTCACCAGATTAATATG+TGG + chr3.2:74982121-74982140 MS.gene045075:CDS 30.0%
GTCTTAATGTGAGAAAGAAT+GGG + chr3.2:74983374-74983393 MS.gene045075:intron 30.0%
GTTATCCATAGAATGATAGA+AGG + chr3.2:74983330-74983349 MS.gene045075:intron 30.0%
TAATGGTTATCAAGAAAGCT+AGG - chr3.2:74983746-74983765 None:intergenic 30.0%
TGTCATGCCATAATTGAATA+TGG - chr3.2:74983439-74983458 None:intergenic 30.0%
TGTCTTAATGTGAGAAAGAA+TGG + chr3.2:74983373-74983392 MS.gene045075:intron 30.0%
TTTCTATCACTTTATGTCAC+CGG + chr3.2:74982780-74982799 MS.gene045075:intron 30.0%
! GAAAGATTTTTCTTGTGGAT+CGG + chr3.2:74983243-74983262 MS.gene045075:CDS 30.0%
! GATACCATGCTTTCAAATTT+TGG + chr3.2:74982444-74982463 MS.gene045075:intron 30.0%
! GTTTTATAATGCTTAGTCAG+AGG + chr3.2:74982306-74982325 MS.gene045075:intron 30.0%
!! CAAAGGTTGATTTGTTTCAT+TGG + chr3.2:74982239-74982258 MS.gene045075:intron 30.0%
!!! CAAGCTATTTTTTTCAGAAG+GGG - chr3.2:74983970-74983989 None:intergenic 30.0%
!!! CCAAGCTATTTTTTTCAGAA+GGG - chr3.2:74983971-74983990 None:intergenic 30.0%
!!! GATGTTTTTTATGTGATGTC+CGG + chr3.2:74983201-74983220 MS.gene045075:CDS 30.0%
!!! TTAAAACCTTTTTTCGCAGA+CGG - chr3.2:74982555-74982574 None:intergenic 30.0%
AAAACTGCAGGGAATGTATA+TGG + chr3.2:74982845-74982864 MS.gene045075:intron 35.0%
AAACTGCAGGGAATGTATAT+GGG + chr3.2:74982846-74982865 MS.gene045075:intron 35.0%
AGGAACTTATATTCCACAGA+TGG + chr3.2:74983665-74983684 MS.gene045075:CDS 35.0%
AGTCAGGTAAATGTTTGCAA+AGG + chr3.2:74982222-74982241 MS.gene045075:intron 35.0%
AGTTCTTGCATTGCATTCTA+AGG + chr3.2:74982983-74983002 MS.gene045075:intron 35.0%
ATCCATTCCCTTAATTGATG+AGG + chr3.2:74982179-74982198 MS.gene045075:CDS 35.0%
ATGTGTTGTAACAACAATCC+CGG - chr3.2:74983937-74983956 None:intergenic 35.0%
TAGTATGACATGTTGCGAAA+AGG - chr3.2:74983795-74983814 None:intergenic 35.0%
TCTGTCAATGGTTCAATCAT+TGG - chr3.2:74983519-74983538 None:intergenic 35.0%
TTAATGTGAGAAAGAATGGG+AGG + chr3.2:74983377-74983396 MS.gene045075:intron 35.0%
TTCCTTTCTCTAATACCTTG+AGG + chr3.2:74982817-74982836 MS.gene045075:intron 35.0%
TTCGATAGATTTCAGCATAG+TGG - chr3.2:74983158-74983177 None:intergenic 35.0%
! CATACTTGTTAGATGTTCCT+AGG - chr3.2:74982348-74982367 None:intergenic 35.0%
! CCCTTCTGAAAAAAATAGCT+TGG + chr3.2:74983968-74983987 MS.gene045075:intron 35.0%
! CTTGAAGTTTGATAGTAGTC+AGG + chr3.2:74982206-74982225 MS.gene045075:CDS 35.0%
!!! GCCAAGCTATTTTTTTCAGA+AGG - chr3.2:74983972-74983991 None:intergenic 35.0%
AACTGCGATTCGTGTTTAAC+AGG + chr3.2:74984010-74984029 MS.gene045075:intron 40.0%
AAGTCCGCCTCATCAATTAA+GGG - chr3.2:74982189-74982208 None:intergenic 40.0%
AATCGTTGTTGCTCTGTCAA+TGG - chr3.2:74983531-74983550 None:intergenic 40.0%
AGAAAGCTAGGTACAATACC+TGG - chr3.2:74983734-74983753 None:intergenic 40.0%
AGAATATTTCCAACGCCTGA+GGG + chr3.2:74984118-74984137 MS.gene045075:CDS 40.0%
AGGAAAAAGAAAGACGATGC+CGG - chr3.2:74982802-74982821 None:intergenic 40.0%
ATGTCCATACTCCATCTCAA+AGG - chr3.2:74983034-74983053 None:intergenic 40.0%
ATTGACAGAGCAACAACGAT+TGG + chr3.2:74983530-74983549 MS.gene045075:CDS 40.0%
CAGATTAATATGTGGGGAGA+AGG + chr3.2:74982129-74982148 MS.gene045075:CDS 40.0%
CATGATTTGATCACGGAGTT+CGG - chr3.2:74983872-74983891 None:intergenic 40.0%
CATTCCCTTAATTGATGAGG+CGG + chr3.2:74982182-74982201 MS.gene045075:CDS 40.0%
CATTTCTGACATTGCCTTAC+AGG + chr3.2:74982639-74982658 MS.gene045075:intron 40.0%
CGATTGGATATCGATAACCT+TGG + chr3.2:74983546-74983565 MS.gene045075:CDS 40.0%
CTTCTCCCCACATATTAATC+TGG - chr3.2:74982131-74982150 None:intergenic 40.0%
CTTGTTGACATGATTGTCCA+AGG - chr3.2:74983566-74983585 None:intergenic 40.0%
GGAGAAGGCTTCAAAAGTAA+TGG + chr3.2:74982144-74982163 MS.gene045075:CDS 40.0%
GTATTAGTGACATAGAGCTC+AGG + chr3.2:74983109-74983128 MS.gene045075:CDS 40.0%
TCTCGCCTTCTATCATTCTA+TGG - chr3.2:74983338-74983357 None:intergenic 40.0%
TGAGATGGAGTATGGACATT+GGG + chr3.2:74983035-74983054 MS.gene045075:CDS 40.0%
TTCTCATTTCCGAGATTTGC+CGG - chr3.2:74983074-74983093 None:intergenic 40.0%
TTGAGATGGAGTATGGACAT+TGG + chr3.2:74983034-74983053 MS.gene045075:CDS 40.0%
TTGAGGCAACAAAAACTGCA+GGG + chr3.2:74982834-74982853 MS.gene045075:intron 40.0%
TTTAACAGGCTGACCATCTT+CGG + chr3.2:74984024-74984043 MS.gene045075:intron 40.0%
TTTCTCCATGCCTTGTGAAA+GGG - chr3.2:74983598-74983617 None:intergenic 40.0%
! AGATTTTTCTTGTGGATCGG+TGG + chr3.2:74983246-74983265 MS.gene045075:CDS 40.0%
! CGGCTGAAAGATTTTTCTTG+TGG + chr3.2:74983238-74983257 MS.gene045075:CDS 40.0%
! TCGTTTGAAGTTAGTGCAGT+TGG + chr3.2:74982687-74982706 MS.gene045075:CDS 40.0%
! TGCCTCAAGGTATTAGAGAA+AGG - chr3.2:74982822-74982841 None:intergenic 40.0%
!! ATTGGGTTGATGAGCAAAAC+CGG + chr3.2:74983052-74983071 MS.gene045075:CDS 40.0%
ACAAACCAACCTGGATTCAC+AGG - chr3.2:74982909-74982928 None:intergenic 45.0%
AGCATCTTCACAAACCAACC+TGG - chr3.2:74982918-74982937 None:intergenic 45.0%
AGCTCGATGTTTGCTTGCTT+TGG + chr3.2:74984094-74984113 MS.gene045075:CDS 45.0%
AGGGAATGTATATGGGTGGT+GGG + chr3.2:74982853-74982872 MS.gene045075:intron 45.0%
ATACACACTCATCCTTCTCG+AGG - chr3.2:74982097-74982116 None:intergenic 45.0%
ATCACCTTGAGAAGCTCAGA+AGG - chr3.2:74983279-74983298 None:intergenic 45.0%
CAAGTCCGCCTCATCAATTA+AGG - chr3.2:74982190-74982209 None:intergenic 45.0%
CGCCTCATCAATTAAGGGAA+TGG - chr3.2:74982184-74982203 None:intergenic 45.0%
CTCAAAGGCTGCAATTCCTA+CGG - chr3.2:74983019-74983038 None:intergenic 45.0%
CTTGAGGCAACAAAAACTGC+AGG + chr3.2:74982833-74982852 MS.gene045075:intron 45.0%
GAGAATATTTCCAACGCCTG+AGG + chr3.2:74984117-74984136 MS.gene045075:CDS 45.0%
GATGCTTCTCATGGTATCCT+AGG + chr3.2:74982328-74982347 MS.gene045075:CDS 45.0%
GCAGCTGGACAATTCATTGA+AGG + chr3.2:74983645-74983664 MS.gene045075:CDS 45.0%
GCTCGATGTTTGCTTGCTTT+GGG + chr3.2:74984095-74984114 MS.gene045075:CDS 45.0%
GCTGCAATTCCTACGGATAA+GGG - chr3.2:74983012-74983031 None:intergenic 45.0%
GTTTCTCCATGCCTTGTGAA+AGG - chr3.2:74983599-74983618 None:intergenic 45.0%
TAAGAGCCGTCTGCGAAAAA+AGG + chr3.2:74982546-74982565 MS.gene045075:CDS 45.0%
TAGTCAGAGGATGCTTCTCA+TGG + chr3.2:74982319-74982338 MS.gene045075:intron 45.0%
TCACCTTGAGAAGCTCAGAA+GGG - chr3.2:74983278-74983297 None:intergenic 45.0%
TGAGCAAAACCGGCAAATCT+CGG + chr3.2:74983062-74983081 MS.gene045075:CDS 45.0%
TTTATGTGATGTCCGGCATG+TGG + chr3.2:74983208-74983227 MS.gene045075:CDS 45.0%
! AGGAATTGCAGCCTTTGAGA+TGG + chr3.2:74983020-74983039 MS.gene045075:intron 45.0%
! AGTGACAAATGGAAAGCACG+TGG - chr3.2:74983826-74983845 None:intergenic 45.0%
! CTGCAGTTTTTGTTGCCTCA+AGG - chr3.2:74982835-74982854 None:intergenic 45.0%
! TCTTGTGAGCTTTGTGAACC+AGG + chr3.2:74983713-74983732 MS.gene045075:CDS 45.0%
! TGTTCGCGACATTTGTTGCA+AGG - chr3.2:74984057-74984076 None:intergenic 45.0%
!! AATGTATATGGGTGGTGGGT+TGG + chr3.2:74982857-74982876 MS.gene045075:CDS 45.0%
AACGTGTTAGACAGCAGGTG+TGG + chr3.2:74982722-74982741 MS.gene045075:intron 50.0%
ACGTGTTAGACAGCAGGTGT+GGG + chr3.2:74982723-74982742 MS.gene045075:intron 50.0%
AGATGCCCTTTCACAAGGCA+TGG + chr3.2:74983590-74983609 MS.gene045075:CDS 50.0%
ATAGTGAGCTCAAAGCCCTC+AGG - chr3.2:74984136-74984155 None:intergenic 50.0%
CACAAGGCATGGAGAAACTG+CGG + chr3.2:74983601-74983620 MS.gene045075:CDS 50.0%
CAGGGAATGTATATGGGTGG+TGG + chr3.2:74982852-74982871 MS.gene045075:intron 50.0%
CTAAGGACACCCTTATCCGT+AGG + chr3.2:74983000-74983019 MS.gene045075:intron 50.0%
CTGCAGGGAATGTATATGGG+TGG + chr3.2:74982849-74982868 MS.gene045075:intron 50.0%
CTGCTGCACATAAGCCTGTA+AGG - chr3.2:74982656-74982675 None:intergenic 50.0%
GCAAACATCGAGCTGACTGA+CGG - chr3.2:74984088-74984107 None:intergenic 50.0%
GCAGAAGATGCCCTTTCACA+AGG + chr3.2:74983585-74983604 MS.gene045075:CDS 50.0%
GGCTGCAATTCCTACGGATA+AGG - chr3.2:74983013-74983032 None:intergenic 50.0%
GTCCGGCATGTGGAAAACAA+CGG + chr3.2:74983218-74983237 MS.gene045075:CDS 50.0%
TCCACAGATGGCTACTGCAA+TGG + chr3.2:74983677-74983696 MS.gene045075:CDS 50.0%
TCCATTGCAGTAGCCATCTG+TGG - chr3.2:74983681-74983700 None:intergenic 50.0%
TCTCGAGGAAACAAACTGCG+CGG - chr3.2:74982082-74982101 None:intergenic 50.0%
TGACATAGAGCTCAGGATGC+TGG + chr3.2:74983116-74983135 MS.gene045075:CDS 50.0%
TTTGCTGGACCTGTGAATCC+AGG + chr3.2:74982897-74982916 MS.gene045075:CDS 50.0%
! CGCAGTTTGTTTCCTCGAGA+AGG + chr3.2:74982082-74982101 MS.gene045075:CDS 50.0%
!! AGCCGTTGTTTTCCACATGC+CGG - chr3.2:74983223-74983242 None:intergenic 50.0%
!! GCAGCCTTTGAGATGGAGTA+TGG + chr3.2:74983027-74983046 MS.gene045075:CDS 50.0%
!! TGAGGGCTTTGAGCTCACTA+TGG + chr3.2:74984135-74984154 MS.gene045075:CDS 50.0%
CGTGTTAGACAGCAGGTGTG+GGG + chr3.2:74982724-74982743 MS.gene045075:intron 55.0%
CTGGACCTGTGAATCCAGGT+TGG + chr3.2:74982901-74982920 MS.gene045075:intron 55.0%
GAGGAAACAAACTGCGCGGA+CGG - chr3.2:74982078-74982097 None:intergenic 55.0%
GCAAGGTTTCCTGCCGAAGA+TGG - chr3.2:74984040-74984059 None:intergenic 55.0%
GCTCGAACGTGTTAGACAGC+AGG + chr3.2:74982717-74982736 MS.gene045075:CDS 55.0%
GGCTCTTACGAGCAGCTTCT+CGG - chr3.2:74982534-74982553 None:intergenic 55.0%
TCGCCCTTCTGAGCTTCTCA+AGG + chr3.2:74983272-74983291 MS.gene045075:CDS 55.0%
! GAGCTCAGGATGCTGGTTGA+TGG + chr3.2:74983123-74983142 MS.gene045075:CDS 55.0%
ACAGGCTGACCATCTTCGGC+AGG + chr3.2:74984028-74984047 MS.gene045075:intron 60.0%
AGCTCAAAGCCCTCAGGCGT+TGG - chr3.2:74984130-74984149 None:intergenic 60.0%
! CTCGCTGATAGCGTAGCAGC+TGG + chr3.2:74983630-74983649 MS.gene045075:CDS 60.0%


Chromosome Type Strat End Strand Name
chr3.2 gene 74982066 74984184 74982066 ID=MS.gene045075
chr3.2 mRNA 74982066 74984184 74982066 ID=MS.gene045075.t1;Parent=MS.gene045075
chr3.2 exon 74982066 74982227 74982066 ID=MS.gene045075.t1.exon1;Parent=MS.gene045075.t1
chr3.2 CDS 74982066 74982227 74982066 ID=cds.MS.gene045075.t1;Parent=MS.gene045075.t1
chr3.2 exon 74982322 74982396 74982322 ID=MS.gene045075.t1.exon2;Parent=MS.gene045075.t1
chr3.2 CDS 74982322 74982396 74982322 ID=cds.MS.gene045075.t1;Parent=MS.gene045075.t1
chr3.2 exon 74982508 74982567 74982508 ID=MS.gene045075.t1.exon3;Parent=MS.gene045075.t1
chr3.2 CDS 74982508 74982567 74982508 ID=cds.MS.gene045075.t1;Parent=MS.gene045075.t1
chr3.2 exon 74982661 74982738 74982661 ID=MS.gene045075.t1.exon4;Parent=MS.gene045075.t1
chr3.2 CDS 74982661 74982738 74982661 ID=cds.MS.gene045075.t1;Parent=MS.gene045075.t1
chr3.2 exon 74982855 74982918 74982855 ID=MS.gene045075.t1.exon5;Parent=MS.gene045075.t1
chr3.2 CDS 74982855 74982918 74982855 ID=cds.MS.gene045075.t1;Parent=MS.gene045075.t1
chr3.2 exon 74983022 74983293 74983022 ID=MS.gene045075.t1.exon6;Parent=MS.gene045075.t1
chr3.2 CDS 74983022 74983293 74983022 ID=cds.MS.gene045075.t1;Parent=MS.gene045075.t1
chr3.2 exon 74983507 74983734 74983507 ID=MS.gene045075.t1.exon7;Parent=MS.gene045075.t1
chr3.2 CDS 74983507 74983734 74983507 ID=cds.MS.gene045075.t1;Parent=MS.gene045075.t1
chr3.2 exon 74984032 74984184 74984032 ID=MS.gene045075.t1.exon8;Parent=MS.gene045075.t1
chr3.2 CDS 74984032 74984184 74984032 ID=cds.MS.gene045075.t1;Parent=MS.gene045075.t1
Gene Sequence

>MS.gene045075

ATGAATTCGCCGTCCGCGCAGTTTGTTTCCTCGAGAAGGATGAGTGTGTATGATCCTATTCACCAGATTAATATGTGGGGAGAAGGCTTCAAAAGTAATGGAAATTTAAGTGCATCCATTCCCTTAATTGATGAGGCGGACTTGAAGTTTGATAGTAGTCAGGTAAATGTTTGCAAAGGTTGATTTGTTTCATTGGCAAATGAGAATGCATATTCTGCTTATTAACCAAATTGGATTCATGTTTTATAATGCTTAGTCAGAGGATGCTTCTCATGGTATCCTAGGAACATCTAACAAGTATGAGCAAGAAGCTAATAGACCTATTGATAAGGTTAGAACATGAAGAATTTGTATTCGGTGCACATTAAGTCATTAATTGATACCATGCTTTCAAATTTTGGATGTTGTACATTAAGTCATTCTGATATGATTAAATATGCAGATACAAAGGCGTCTTGCACAAAACCGAGAAGCTGCTCGTAAGAGCCGTCTGCGAAAAAAGGTTTTAATGTTGTTTACAAATTGATGAATATGTCAGACGAGTAATTATTAGTGTCAATGTACTGATCAAGTCATTTCTGACATTGCCTTACAGGCTTATGTGCAGCAGCTAGAATCAAGTCGTTTGAAGTTAGTGCAGTTGGAGCAAGAGCTCGAACGTGTTAGACAGCAGGTGTGGGGAAGATGAGTTATTATTTTACTAGTATTTTCTCTTTTCTATCACTTTATGTCACCGGCATCGTCTTTCTTTTTCCTTTCTCTAATACCTTGAGGCAACAAAAACTGCAGGGAATGTATATGGGTGGTGGGTTGGATTCTAATAATATGTGTTTTGCTGGACCTGTGAATCCAGGTTGGTTTGTGAAGATGCTACTACTGCTATATATTTATTTGTATTGCATTTAATTTTTCAAATTAGTTCTTGCATTGCATTCTAAGGACACCCTTATCCGTAGGAATTGCAGCCTTTGAGATGGAGTATGGACATTGGGTTGATGAGCAAAACCGGCAAATCTCGGAAATGAGAAATGCTTTAAACTCGCGTATTAGTGACATAGAGCTCAGGATGCTGGTTGATGGTATGATGAACCACTATGCTGAAATCTATCGAATGAAATCTGCAGCTGCAAAAACAGATGTTTTTTATGTGATGTCCGGCATGTGGAAAACAACGGCTGAAAGATTTTTCTTGTGGATCGGTGGATTTCGCCCTTCTGAGCTTCTCAAGGTGATTGTTCATATTTAAAGAATATAAGTTGAAGATGTTATCCATAGAATGATAGAAGGCGAGATCAAAATTTCATCATTGTCTTAATGTGAGAAAGAATGGGAGGAGTTTAGAACTGCATTCATTTATTACAACTTTAATTCCATATTCAATTATGGCATGACAAATTTATAATGTAGTATGGTGGAAGTCTATAACTTGATTTAATTGCAGATTCTTGGTCCAATGATTGAACCATTGACAGAGCAACAACGATTGGATATCGATAACCTTGGACAATCATGTCAACAAGCAGAAGATGCCCTTTCACAAGGCATGGAGAAACTGCGGCAAACACTCGCTGATAGCGTAGCAGCTGGACAATTCATTGAAGGAACTTATATTCCACAGATGGCTACTGCAATGGAGAAGTTAGAAGCTCTTGTGAGCTTTGTGAACCAGGTATTGTACCTAGCTTTCTTGATAACCATTACTTTTCAATTTAATAAAACTTAATTTCCTTTTCGCAACATGTCATACTAATAAAAGACCACGTGCTTTCCATTTGTCACTAACTTATTATCAAGCAAAATTGTCCGAACTCCGTGATCAAATCATGTATGTTTTATGTCTGCGTTTTTTGTATATGTTTATTTTATAACCGGGATTGTTGTTACAACACATTATTAATTGACCCCTTCTGAAAAAAATAGCTTGGCCATTAGAATCACATATTTAACTGCGATTCGTGTTTAACAGGCTGACCATCTTCGGCAGGAAACCTTGCAACAAATGTCGCGAACACTTACAATCCGTCAGTCAGCTCGATGTTTGCTTGCTTTGGGAGAATATTTCCAACGCCTGAGGGCTTTGAGCTCACTATGGTCTAATCGACCCCGAGAACCTGCTTAG
Protein sequence

>MS.gene045075.t1

MNSPSAQFVSSRRMSVYDPIHQINMWGEGFKSNGNLSASIPLIDEADLKFDSSQSEDASHGILGTSNKYEQEANRPIDKIQRRLAQNREAARKSRLRKKAYVQQLESSRLKLVQLEQELERVRQQGMYMGGGLDSNNMCFAGPVNPGIAAFEMEYGHWVDEQNRQISEMRNALNSRISDIELRMLVDGMMNHYAEIYRMKSAAAKTDVFYVMSGMWKTTAERFFLWIGGFRPSELLKILGPMIEPLTEQQRLDIDNLGQSCQQAEDALSQGMEKLRQTLADSVAAGQFIEGTYIPQMATAMEKLEALVSFVNQADHLRQETLQQMSRTLTIRQSARCLLALGEYFQRLRALSSLWSNRPREPA