AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene045626

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene045626.t1 MTR_5g041700 97.581 248 6 0 1 248 1 248 0.0 496
MS.gene045626.t1 MTR_4g081950 87.045 247 32 0 1 247 37 283 3.56e-164 455
MS.gene045626.t1 MTR_3g094040 80.165 242 48 0 6 247 12 253 1.06e-146 410
MS.gene045626.t1 MTR_3g094060 80.165 242 48 0 6 247 12 253 1.47e-146 409
MS.gene045626.t1 MTR_3g435430 80.769 234 45 0 14 247 14 247 1.15e-145 407
MS.gene045626.t1 MTR_5g075320 73.984 246 63 1 3 247 6 251 4.17e-139 390
MS.gene045626.t1 MTR_7g011060 76.305 249 48 3 1 247 1 240 2.34e-136 383
MS.gene045626.t1 MTR_3g466760 75.709 247 60 0 1 247 14 260 2.55e-133 376
MS.gene045626.t1 MTR_3g466790 75.304 247 61 0 1 247 8 254 8.28e-133 375
MS.gene045626.t1 MTR_5g079950 74.236 229 57 1 22 248 30 258 2.91e-126 358
MS.gene045626.t1 MTR_2g097030 66.795 259 75 2 1 248 1 259 8.43e-126 357
MS.gene045626.t1 MTR_7g061720 74.672 229 56 1 22 248 29 257 1.42e-125 357
MS.gene045626.t1 MTR_6g012520 75.200 250 51 3 1 247 1 242 5.26e-123 350
MS.gene045626.t1 MTR_4g063975 72.489 229 61 1 22 248 29 257 1.36e-117 337
MS.gene045626.t1 MTR_1g026020 65.919 223 73 2 24 243 28 250 1.61e-111 321
MS.gene045626.t1 MTR_1g085460 65.315 222 73 3 25 242 30 251 3.03e-105 305
MS.gene045626.t1 MTR_7g111010 59.761 251 95 5 3 247 4 254 1.16e-104 303
MS.gene045626.t1 MTR_7g110990 64.474 228 76 4 25 247 12 239 7.30e-104 301
MS.gene045626.t1 MTR_7g013150 57.322 239 98 2 6 242 11 247 3.44e-97 285
MS.gene045626.t1 MTR_4g124340 58.667 225 88 3 23 244 59 281 7.18e-97 285
MS.gene045626.t1 MTR_7g013120 54.839 248 107 3 2 246 6 251 4.69e-95 279
MS.gene045626.t1 MTR_7g013140 57.500 240 96 3 7 244 12 247 1.37e-94 278
MS.gene045626.t1 MTR_8g058990 55.870 247 104 3 2 245 6 250 1.53e-92 273
MS.gene045626.t1 MTR_8g464350 54.098 244 108 2 1 242 7 248 1.14e-91 271
MS.gene045626.t1 MTR_5g076950 56.696 224 96 1 25 247 41 264 3.31e-90 267
MS.gene045626.t1 MTR_5g011210 57.658 222 90 3 25 243 37 257 6.80e-89 264
MS.gene045626.t1 MTR_0040s0140 48.996 249 125 1 1 247 8 256 7.74e-87 258
MS.gene045626.t1 MTR_4g102450 55.605 223 93 4 25 243 36 256 4.05e-84 252
MS.gene045626.t1 MTR_2g090255 48.163 245 124 2 6 247 8 252 4.84e-84 251
MS.gene045626.t1 MTR_3g064510 52.790 233 101 5 25 248 53 285 6.11e-81 244
MS.gene045626.t1 MTR_6g012500 70.000 120 30 1 134 247 161 280 3.43e-53 173
MS.gene045626.t1 MTR_0008s0120 38.618 246 92 4 3 245 7 196 3.37e-46 153
MS.gene045626.t1 MTR_2g090270 31.197 234 131 9 25 243 35 253 1.77e-25 101
MS.gene045626.t1 MTR_2g090265 29.845 258 151 10 1 243 9 251 5.19e-25 99.8
MS.gene045626.t1 MTR_0118s0070 32.314 229 127 10 30 242 53 269 1.32e-24 99.0
MS.gene045626.t1 MTR_0122s0020 31.169 231 135 9 25 243 41 259 1.38e-23 96.3
MS.gene045626.t1 MTR_0809s0010 30.769 234 130 11 25 242 47 264 8.20e-22 91.7
MS.gene045626.t1 MTR_4g028640 31.197 234 128 11 25 242 42 258 2.40e-21 90.1
MS.gene045626.t1 MTR_5g013440 27.801 241 156 9 9 242 16 245 7.72e-18 80.5
MS.gene045626.t1 MTR_4g099370 28.761 226 144 9 25 242 28 244 6.01e-17 78.2
MS.gene045626.t1 MTR_0122s0020 32.386 176 96 8 25 189 41 204 1.71e-15 73.2
MS.gene045626.t1 MTR_4g075790 28.829 222 127 9 36 242 32 237 2.62e-15 73.6
MS.gene045626.t1 MTR_1g085365 55.357 56 25 0 192 247 4 59 3.13e-15 68.6
MS.gene045626.t1 MTR_4g098930 27.660 235 136 10 25 242 29 246 2.97e-13 67.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene045626.t1 AT2G03090 83.065 248 42 0 1 248 6 253 3.30e-155 431
MS.gene045626.t1 AT1G69530 82.800 250 41 2 1 248 1 250 1.21e-152 425
MS.gene045626.t1 AT1G69530 82.800 250 41 2 1 248 1 250 1.21e-152 425
MS.gene045626.t1 AT1G69530 81.600 250 44 2 1 248 1 250 3.08e-150 420
MS.gene045626.t1 AT1G26770 84.337 249 38 1 1 248 1 249 6.35e-146 408
MS.gene045626.t1 AT1G26770 84.337 249 38 1 1 248 11 259 7.53e-146 408
MS.gene045626.t1 AT5G56320 76.829 246 56 1 3 248 8 252 2.14e-139 392
MS.gene045626.t1 AT5G56320 76.829 246 56 1 3 248 8 252 2.14e-139 392
MS.gene045626.t1 AT5G56320 76.829 246 56 1 3 248 8 252 1.88e-138 391
MS.gene045626.t1 AT2G40610 70.850 247 68 2 2 247 10 253 5.23e-133 375
MS.gene045626.t1 AT2G39700 75.983 229 53 1 22 248 28 256 2.59e-129 366
MS.gene045626.t1 AT1G69530 73.600 250 34 3 1 248 1 220 4.94e-128 362
MS.gene045626.t1 AT1G69530 77.729 229 47 3 1 227 1 227 3.57e-127 360
MS.gene045626.t1 AT5G02260 74.236 229 57 1 22 248 29 257 8.44e-127 360
MS.gene045626.t1 AT3G55500 67.717 254 76 2 1 248 6 259 5.95e-126 358
MS.gene045626.t1 AT5G05290 72.124 226 62 1 23 247 30 255 2.73e-125 356
MS.gene045626.t1 AT2G37640 73.362 229 59 1 22 248 33 261 3.15e-124 353
MS.gene045626.t1 AT3G29030 74.222 225 49 2 25 248 38 254 2.07e-121 346
MS.gene045626.t1 AT2G28950 67.578 256 75 2 1 248 1 256 5.63e-121 345
MS.gene045626.t1 AT1G20190 67.713 223 69 2 24 243 25 247 5.58e-111 320
MS.gene045626.t1 AT2G37640 71.292 209 58 1 42 248 28 236 3.00e-110 317
MS.gene045626.t1 AT4G01630 62.810 242 85 4 6 242 8 249 7.95e-107 309
MS.gene045626.t1 AT5G39280 55.702 228 99 1 17 244 46 271 2.05e-94 278
MS.gene045626.t1 AT5G39300 55.459 229 100 1 16 244 46 272 4.13e-94 278
MS.gene045626.t1 AT5G39270 57.273 220 92 1 25 244 58 275 2.19e-92 273
MS.gene045626.t1 AT5G39290 56.364 220 94 1 25 244 58 275 1.10e-91 271
MS.gene045626.t1 AT1G20190 64.706 187 63 2 60 243 2 188 9.57e-89 261
MS.gene045626.t1 AT1G12560 53.785 251 110 5 3 248 13 262 3.86e-88 262
MS.gene045626.t1 AT1G62980 53.061 245 108 4 1 242 10 250 3.01e-87 259
MS.gene045626.t1 AT5G39310 55.405 222 96 2 24 244 89 308 3.12e-87 261
MS.gene045626.t1 AT3G03220 53.778 225 103 1 25 248 40 264 8.19e-86 256
MS.gene045626.t1 AT3G15370 52.400 250 104 7 8 247 7 251 3.27e-84 251
MS.gene045626.t1 AT5G39260 52.212 226 100 2 20 244 40 258 9.80e-79 238
MS.gene045626.t1 AT4G38210 47.967 246 121 3 6 247 12 254 2.35e-78 237
MS.gene045626.t1 AT3G15370 46.786 280 104 8 8 247 7 281 1.51e-77 236
MS.gene045626.t1 AT4G28250 34.764 233 125 10 25 243 36 255 2.23e-28 108
MS.gene045626.t1 AT2G20750 32.189 233 134 9 25 243 40 262 1.88e-25 101
MS.gene045626.t1 AT4G28250 33.621 232 123 10 25 243 36 249 1.40e-24 98.6
MS.gene045626.t1 AT1G65680 30.864 243 141 10 15 242 37 267 2.99e-23 95.5
MS.gene045626.t1 AT1G65681 30.876 217 125 9 39 242 12 216 2.35e-19 84.0
MS.gene045626.t1 AT2G20750 31.792 173 98 6 25 186 40 203 9.66e-18 79.7
MS.gene045626.t1 AT4G17030 29.084 251 149 9 6 242 8 243 1.03e-17 80.1
MS.gene045626.t1 AT2G45110 28.814 236 129 9 28 242 36 253 2.08e-17 79.3
MS.gene045626.t1 AT4G28250 33.143 175 90 7 25 189 36 193 1.07e-16 76.6
MS.gene045626.t1 AT4G28250 33.721 172 87 7 25 186 36 190 2.60e-16 75.5
MS.gene045626.t1 AT3G60570 25.984 254 156 9 8 242 11 251 1.73e-15 74.3
MS.gene045626.t1 AT3G45970 26.415 212 134 9 43 242 14 215 1.70e-14 71.2
MS.gene045626.t1 AT3G45960 29.126 206 125 9 48 242 46 241 1.83e-13 68.6
MS.gene045626.t1 AT4G38400 26.699 206 130 8 48 242 47 242 5.02e-12 64.7
MS.gene045626.t1 AT3G45970 25.604 207 132 9 48 242 46 242 7.12e-12 63.9

Find 73 sgRNAs with CRISPR-Local

Find 109 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCCCCAGCTGGTTGGTCTTT+TGG 0.178373 5.3:-29357301 MS.gene045626:CDS
CAAAGCAACAATTATCTTAA+TGG 0.193864 5.3:-29357385 MS.gene045626:CDS
GGATGCCAATGTCTAGAAAT+TGG 0.241916 5.3:-29357420 MS.gene045626:CDS
AATGCACATGCAACTTTCTA+TGG 0.254508 5.3:-29358658 MS.gene045626:CDS
TCTCATTGGGTTGTTCTTCA+TGG 0.255156 5.3:-29358731 MS.gene045626:CDS
GTGTCTTCCTGGCTCTATTT+TGG 0.260571 5.3:-29358368 MS.gene045626:CDS
CTAGAAATTGGGGTCAAAAT+TGG 0.289763 5.3:-29357408 MS.gene045626:CDS
TTAGGTGGTGCATGTGGATA+TGG 0.293336 5.3:-29358508 MS.gene045626:intron
GTACATTCAGTAGCTATTAA+AGG 0.297161 5.3:-29357457 MS.gene045626:CDS
GCAGAAGAAGGGGAGGAATT+AGG 0.323849 5.3:-29357546 MS.gene045626:CDS
GTGGTTCTTGCTTTGAGATT+AGG 0.333003 5.3:-29358411 MS.gene045626:CDS
GACCGTAAATGGTGTCTTCC+TGG 0.357239 5.3:-29358379 MS.gene045626:CDS
CACCATCCTCCATTGTTATT+AGG 0.369879 5.3:+29358307 None:intergenic
GCTATTAAAGGGTCAAGAAC+AGG 0.379089 5.3:-29357445 MS.gene045626:CDS
TTCCATAACCTTGACTGTAT+AGG 0.380723 5.3:+29358482 None:intergenic
TGGCCAAGCTTTGTCTTTCA+AGG 0.384678 5.3:-29357365 MS.gene045626:CDS
GATGCCAATGTCTAGAAATT+GGG 0.384818 5.3:-29357419 MS.gene045626:CDS
AGCCAGGAAGACACCATTTA+CGG 0.387805 5.3:+29358377 None:intergenic
TGCTTTGAGATTAGGTGTGC+TGG 0.396638 5.3:-29358403 MS.gene045626:CDS
AATTCCTCCCCTTCTTCTGC+AGG 0.397486 5.3:+29357549 None:intergenic
ACCAGCTGGGGCAGCATTGT+TGG 0.398932 5.3:+29357312 None:intergenic
TTATTAGGCAAGGCATTGTT+TGG 0.406087 5.3:+29358322 None:intergenic
ATTTACCTTCTGTAAGAAAC+AGG 0.410554 5.3:+29358208 None:intergenic
TATGGTGTGTCTAACGGAAT+TGG 0.414245 5.3:+29357260 None:intergenic
GGTGTGCTGGTGACCGTAAA+TGG 0.417502 5.3:-29358390 MS.gene045626:CDS
AACCTATACAGTCAAGGTTA+TGG 0.427075 5.3:-29358484 MS.gene045626:CDS
CTTATGGTTATGGTGGAGGA+TGG 0.431228 5.3:-29358684 MS.gene045626:CDS
GTAACAAATGTGGGTGGTGC+TGG 0.440862 5.3:-29357484 MS.gene045626:CDS
TACATTCAGTAGCTATTAAA+GGG 0.441653 5.3:-29357456 MS.gene045626:CDS
GGAATTAGGTTCACAATCAA+TGG 0.459198 5.3:-29357532 MS.gene045626:CDS
ACAATGCTGCCCCAGCTGGT+TGG 0.464148 5.3:-29357309 MS.gene045626:CDS
TCCAACAATGCTGCCCCAGC+TGG 0.465999 5.3:-29357313 MS.gene045626:CDS
TAACCTTGAAAGACAAAGCT+TGG 0.500681 5.3:+29357362 None:intergenic
TCTGCTTATGGTTATGGTGG+AGG 0.502421 5.3:-29358688 MS.gene045626:CDS
TTGTTCCTGTTTCTTACAGA+AGG 0.505585 5.3:-29358213 MS.gene045626:intron
TCCTCCATTGTTATTAGGCA+AGG 0.509324 5.3:+29358312 None:intergenic
AGTGATGCATCAGGAACAAT+GGG 0.509766 5.3:-29358631 MS.gene045626:intron
ATGGTGTGTCTAACGGAATT+GGG 0.514181 5.3:+29357261 None:intergenic
GTAGGGTACCCTGCAGAAGA+AGG 0.516806 5.3:-29357558 MS.gene045626:intron
TGACCCCAATTTCTAGACAT+TGG 0.519449 5.3:+29357415 None:intergenic
TATGGAGGAAGTGATGCATC+AGG 0.519711 5.3:-29358640 MS.gene045626:CDS
TGACCAAAAGACCAACCAGC+TGG 0.520912 5.3:+29357298 None:intergenic
TCATCTGCTTATGGTTATGG+TGG 0.521601 5.3:-29358691 MS.gene045626:CDS
TTCAACAGTGGTTTGAGCTG+TGG 0.522814 5.3:-29358430 MS.gene045626:CDS
AGAATTGCTCAATACAAAGC+TGG 0.532239 5.3:-29358238 MS.gene045626:CDS
TTATGGTTATGGTGGAGGAT+GGG 0.534886 5.3:-29358683 MS.gene045626:CDS
TTAGGCAAGGCATTGTTTGG+TGG 0.537849 5.3:+29358325 None:intergenic
AGATCAAAGTGTTGCAAAGG+AGG 0.543969 5.3:+29358280 None:intergenic
TTCAAGGTTACAACAAGTGA+TGG 0.544265 5.3:-29357349 MS.gene045626:CDS
GACCAAAAGACCAACCAGCT+GGG 0.545554 5.3:+29357299 None:intergenic
GCAGTGACCAAAATAGAGCC+AGG 0.547622 5.3:+29358361 None:intergenic
ATTCCTCCCCTTCTTCTGCA+GGG 0.548478 5.3:+29357550 None:intergenic
TACTAGAACTAAGTTGAAGT+AGG 0.551749 5.3:+29357504 None:intergenic
TAGGGTACCCTGCAGAAGAA+GGG 0.557129 5.3:-29357557 MS.gene045626:CDS
ACGGAATTGGGCACCAGTGT+AGG 0.562519 5.3:+29357273 None:intergenic
AAGTGATGCATCAGGAACAA+TGG 0.564601 5.3:-29358632 MS.gene045626:CDS
CTTAGTTCTAGTAACAAATG+TGG 0.570683 5.3:-29357494 MS.gene045626:CDS
GATCAAAGTGTTGCAAAGGA+GGG 0.592393 5.3:+29358281 None:intergenic
GCAAGATCAAAGTGTTGCAA+AGG 0.592711 5.3:+29358277 None:intergenic
TTAGTTCTAGTAACAAATGT+GGG 0.599321 5.3:-29357493 MS.gene045626:CDS
AATGCCTTGCCTAATAACAA+TGG 0.606510 5.3:-29358316 MS.gene045626:CDS
CTATTAAAGGGTCAAGAACA+GGG 0.615693 5.3:-29357444 MS.gene045626:CDS
ATGCCAATGTCTAGAAATTG+GGG 0.621765 5.3:-29357418 MS.gene045626:CDS
AGGGTACCCTGCAGAAGAAG+GGG 0.622412 5.3:-29357556 MS.gene045626:CDS
ACCAAAAGACCAACCAGCTG+GGG 0.625454 5.3:+29357300 None:intergenic
AGCACAGCTTTGTTCAACAG+TGG 0.628810 5.3:-29358442 MS.gene045626:CDS
TGCCTAATAACAATGGAGGA+TGG 0.634087 5.3:-29358309 MS.gene045626:CDS
GCACATGCAACTTTCTATGG+AGG 0.636010 5.3:-29358655 MS.gene045626:CDS
GCCTTGCCTAATAACAATGG+AGG 0.642659 5.3:-29358313 MS.gene045626:CDS
TATGGAAACCTATACAGTCA+AGG 0.647219 5.3:-29358490 MS.gene045626:CDS
GTACCCTGCAGAAGAAGGGG+AGG 0.667861 5.3:-29357553 MS.gene045626:CDS
GTTCTAGTAACAAATGTGGG+TGG 0.696895 5.3:-29357490 MS.gene045626:CDS
TTAAAGGGTCAAGAACAGGG+TGG 0.777410 5.3:-29357441 MS.gene045626:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATATTTTTTATTAAAAAA+AGG - chr5.3:29358328-29358347 MS.gene045626:CDS 0.0%
!!! ACTAATATTAATTATTGTTT+TGG + chr5.3:29358275-29358294 None:intergenic 10.0%
!!! TTTAAAATTATTTATTAGAG+AGG + chr5.3:29358242-29358261 None:intergenic 10.0%
!! ATTAAACATATTAGTCAAAA+GGG + chr5.3:29357465-29357484 None:intergenic 15.0%
!! CTAATATAAAACAAAAAGTA+GGG + chr5.3:29357977-29357996 None:intergenic 15.0%
!! TATTAAACATATTAGTCAAA+AGG + chr5.3:29357466-29357485 None:intergenic 15.0%
!! TCTAATATAAAACAAAAAGT+AGG + chr5.3:29357978-29357997 None:intergenic 15.0%
!! TTTATACTATTTAAGCAATT+TGG - chr5.3:29357433-29357452 MS.gene045626:CDS 15.0%
!!! ATATTGAATTTTTTTTTAGG+TGG - chr5.3:29357483-29357502 MS.gene045626:CDS 15.0%
!! AGTATAAATTACTTACAACT+TGG + chr5.3:29358385-29358404 None:intergenic 20.0%
!! TGAGATTAAATTTGTGTAAT+GGG - chr5.3:29357862-29357881 MS.gene045626:intron 20.0%
!! TTAAACATATTAGTCAAAAG+GGG + chr5.3:29357464-29357483 None:intergenic 20.0%
!! TTGAGATTAAATTTGTGTAA+TGG - chr5.3:29357861-29357880 MS.gene045626:intron 20.0%
!!! GTATTTTTTTCTCTCTAAAT+GGG - chr5.3:29358076-29358095 MS.gene045626:intron 20.0%
!!! TGTATTTTTTTCTCTCTAAA+TGG - chr5.3:29358075-29358094 MS.gene045626:intron 20.0%
! AAAGGACACTTATATAGAAA+AGG - chr5.3:29358346-29358365 MS.gene045626:CDS 25.0%
! AACTTTATCTAGCTAGTTAA+TGG - chr5.3:29358026-29358045 MS.gene045626:intron 25.0%
! ACTTTATCTAGCTAGTTAAT+GGG - chr5.3:29358027-29358046 MS.gene045626:intron 25.0%
! AGAAGTAATTTATTGTTGTG+TGG - chr5.3:29358419-29358438 MS.gene045626:CDS 25.0%
! CAAAGCAACAATTATCTTAA+TGG - chr5.3:29358621-29358640 MS.gene045626:intron 25.0%
! TACATTCAGTAGCTATTAAA+GGG - chr5.3:29358550-29358569 MS.gene045626:intron 25.0%
! TATTTATTAGAGAGGTGAAA+TGG + chr5.3:29358234-29358253 None:intergenic 25.0%
!!! ATTAAATTTGTGTAATGGGT+TGG - chr5.3:29357866-29357885 MS.gene045626:intron 25.0%
!!! TTAGTTCTAGTAACAAATGT+GGG - chr5.3:29358513-29358532 MS.gene045626:intron 25.0%
AATGGTACAATTATCAGTGA+AGG + chr5.3:29358216-29358235 None:intergenic 30.0%
ATGGTACAATTATCAGTGAA+GGG + chr5.3:29358215-29358234 None:intergenic 30.0%
ATTTACCTTCTGTAAGAAAC+AGG + chr5.3:29357801-29357820 None:intergenic 30.0%
CAAAATGCAACAAAAAGTGA+AGG + chr5.3:29357844-29357863 None:intergenic 30.0%
CTTTATCTAGCTAGTTAATG+GGG - chr5.3:29358028-29358047 MS.gene045626:intron 30.0%
GTACATTCAGTAGCTATTAA+AGG - chr5.3:29358549-29358568 MS.gene045626:intron 30.0%
! ACTATGTTTTCATCTGCTTA+TGG - chr5.3:29357306-29357325 MS.gene045626:CDS 30.0%
! TACTAGAACTAAGTTGAAGT+AGG + chr5.3:29358505-29358524 None:intergenic 30.0%
! TGAGCAATTCTAAGAAAAAC+AGG + chr5.3:29357759-29357778 None:intergenic 30.0%
! TTTTCATCTGCTTATGGTTA+TGG - chr5.3:29357312-29357331 MS.gene045626:CDS 30.0%
!! CTTAGTTCTAGTAACAAATG+TGG - chr5.3:29358512-29358531 MS.gene045626:intron 30.0%
!! GTGAAGGGTACTATATAAAA+AGG + chr5.3:29358200-29358219 None:intergenic 30.0%
!! TGTCACTTTCAACTTGTAAA+TGG - chr5.3:29357896-29357915 MS.gene045626:intron 30.0%
AACCTATACAGTCAAGGTTA+TGG - chr5.3:29357522-29357541 MS.gene045626:CDS 35.0%
AATGCACATGCAACTTTCTA+TGG - chr5.3:29357348-29357367 MS.gene045626:CDS 35.0%
AATGCCTTGCCTAATAACAA+TGG - chr5.3:29357690-29357709 MS.gene045626:intron 35.0%
ACATATTAGTCAAAAGGGGT+TGG + chr5.3:29357460-29357479 None:intergenic 35.0%
AGAATTGCTCAATACAAAGC+TGG - chr5.3:29357768-29357787 MS.gene045626:intron 35.0%
ATGCCAATGTCTAGAAATTG+GGG - chr5.3:29358588-29358607 MS.gene045626:intron 35.0%
ATTGTTGTGTGGATTTGTGT+AGG - chr5.3:29358430-29358449 MS.gene045626:CDS 35.0%
CTAGAAATTGGGGTCAAAAT+TGG - chr5.3:29358598-29358617 MS.gene045626:intron 35.0%
CTATTAAAGGGTCAAGAACA+GGG - chr5.3:29358562-29358581 MS.gene045626:intron 35.0%
GATGCCAATGTCTAGAAATT+GGG - chr5.3:29358587-29358606 MS.gene045626:intron 35.0%
GGAATTAGGTTCACAATCAA+TGG - chr5.3:29358474-29358493 MS.gene045626:CDS 35.0%
TAACCTTGAAAGACAAAGCT+TGG + chr5.3:29358647-29358666 None:intergenic 35.0%
TATGGAAACCTATACAGTCA+AGG - chr5.3:29357516-29357535 MS.gene045626:CDS 35.0%
TTCAAGGTTACAACAAGTGA+TGG - chr5.3:29358657-29358676 MS.gene045626:CDS 35.0%
TTCCATAACCTTGACTGTAT+AGG + chr5.3:29357527-29357546 None:intergenic 35.0%
TTGTTGTGTGGATTTGTGTA+GGG - chr5.3:29358431-29358450 MS.gene045626:CDS 35.0%
! ACAAGTTGAAAGTGACATGA+AGG + chr5.3:29357893-29357912 None:intergenic 35.0%
! TTGTTCCTGTTTCTTACAGA+AGG - chr5.3:29357793-29357812 MS.gene045626:intron 35.0%
!! TTATTAGGCAAGGCATTGTT+TGG + chr5.3:29357687-29357706 None:intergenic 35.0%
!!! TTTTTTTTAGGTGGTGCATG+TGG - chr5.3:29357492-29357511 MS.gene045626:CDS 35.0%
AAGTGATGCATCAGGAACAA+TGG - chr5.3:29357374-29357393 MS.gene045626:CDS 40.0%
AGTGATGCATCAGGAACAAT+GGG - chr5.3:29357375-29357394 MS.gene045626:CDS 40.0%
ATCTAGCTAGTTAATGGGGT+TGG - chr5.3:29358032-29358051 MS.gene045626:intron 40.0%
GCTATTAAAGGGTCAAGAAC+AGG - chr5.3:29358561-29358580 MS.gene045626:intron 40.0%
GGATGCCAATGTCTAGAAAT+TGG - chr5.3:29358586-29358605 MS.gene045626:intron 40.0%
GTTCTAGTAACAAATGTGGG+TGG - chr5.3:29358516-29358535 MS.gene045626:intron 40.0%
TCATCTGCTTATGGTTATGG+TGG - chr5.3:29357315-29357334 MS.gene045626:CDS 40.0%
TGCCTAATAACAATGGAGGA+TGG - chr5.3:29357697-29357716 MS.gene045626:intron 40.0%
! CACCATCCTCCATTGTTATT+AGG + chr5.3:29357702-29357721 None:intergenic 40.0%
! TCCTCCATTGTTATTAGGCA+AGG + chr5.3:29357697-29357716 None:intergenic 40.0%
! TCTCATTGGGTTGTTCTTCA+TGG - chr5.3:29357275-29357294 MS.gene045626:CDS 40.0%
! TGACCCCAATTTCTAGACAT+TGG + chr5.3:29358594-29358613 None:intergenic 40.0%
! TTATGGTTATGGTGGAGGAT+GGG - chr5.3:29357323-29357342 MS.gene045626:CDS 40.0%
!! AGATCAAAGTGTTGCAAAGG+AGG + chr5.3:29357729-29357748 None:intergenic 40.0%
!! GATCAAAGTGTTGCAAAGGA+GGG + chr5.3:29357728-29357747 None:intergenic 40.0%
!! GCAAGATCAAAGTGTTGCAA+AGG + chr5.3:29357732-29357751 None:intergenic 40.0%
!! GTGGTTCTTGCTTTGAGATT+AGG - chr5.3:29357595-29357614 MS.gene045626:intron 40.0%
AGCCAGGAAGACACCATTTA+CGG + chr5.3:29357632-29357651 None:intergenic 45.0%
GCACATGCAACTTTCTATGG+AGG - chr5.3:29357351-29357370 MS.gene045626:CDS 45.0%
GCCTTGCCTAATAACAATGG+AGG - chr5.3:29357693-29357712 MS.gene045626:intron 45.0%
TATGGAGGAAGTGATGCATC+AGG - chr5.3:29357366-29357385 MS.gene045626:CDS 45.0%
TCTGCTTATGGTTATGGTGG+AGG - chr5.3:29357318-29357337 MS.gene045626:CDS 45.0%
TTAAAGGGTCAAGAACAGGG+TGG - chr5.3:29358565-29358584 MS.gene045626:intron 45.0%
TTAGGTGGTGCATGTGGATA+TGG - chr5.3:29357498-29357517 MS.gene045626:CDS 45.0%
TTCAACAGTGGTTTGAGCTG+TGG - chr5.3:29357576-29357595 MS.gene045626:intron 45.0%
! CTTATGGTTATGGTGGAGGA+TGG - chr5.3:29357322-29357341 MS.gene045626:CDS 45.0%
! TCTTTTGGTCAGACCTACAC+TGG - chr5.3:29358720-29358739 MS.gene045626:CDS 45.0%
! TGGCCAAGCTTTGTCTTTCA+AGG - chr5.3:29358641-29358660 MS.gene045626:CDS 45.0%
!! AGCACAGCTTTGTTCAACAG+TGG - chr5.3:29357564-29357583 MS.gene045626:intron 45.0%
!! TGCTTTGAGATTAGGTGTGC+TGG - chr5.3:29357603-29357622 MS.gene045626:intron 45.0%
!! TTAGGCAAGGCATTGTTTGG+TGG + chr5.3:29357684-29357703 None:intergenic 45.0%
!!! GTGTCTTCCTGGCTCTATTT+TGG - chr5.3:29357638-29357657 MS.gene045626:intron 45.0%
!!! TTAATATTGAATTTTTTTTT+AGG - chr5.3:29357480-29357499 MS.gene045626:CDS 5.0%
AATTCCTCCCCTTCTTCTGC+AGG + chr5.3:29358460-29358479 None:intergenic 50.0%
ACCAAAAGACCAACCAGCTG+GGG + chr5.3:29358709-29358728 None:intergenic 50.0%
ATTCCTCCCCTTCTTCTGCA+GGG + chr5.3:29358459-29358478 None:intergenic 50.0%
GACCAAAAGACCAACCAGCT+GGG + chr5.3:29358710-29358729 None:intergenic 50.0%
GACCGTAAATGGTGTCTTCC+TGG - chr5.3:29357627-29357646 MS.gene045626:intron 50.0%
GCAGAAGAAGGGGAGGAATT+AGG - chr5.3:29358460-29358479 MS.gene045626:CDS 50.0%
GCAGTGACCAAAATAGAGCC+AGG + chr5.3:29357648-29357667 None:intergenic 50.0%
GTAACAAATGTGGGTGGTGC+TGG - chr5.3:29358522-29358541 MS.gene045626:intron 50.0%
TGACCAAAAGACCAACCAGC+TGG + chr5.3:29358711-29358730 None:intergenic 50.0%
! TAGGGTACCCTGCAGAAGAA+GGG - chr5.3:29358449-29358468 MS.gene045626:CDS 50.0%
ACGGAATTGGGCACCAGTGT+AGG + chr5.3:29358736-29358755 None:intergenic 55.0%
! AGGGTACCCTGCAGAAGAAG+GGG - chr5.3:29358450-29358469 MS.gene045626:CDS 55.0%
! GGTGTGCTGGTGACCGTAAA+TGG - chr5.3:29357616-29357635 MS.gene045626:intron 55.0%
! GTAGGGTACCCTGCAGAAGA+AGG - chr5.3:29358448-29358467 MS.gene045626:CDS 55.0%
ACAATGCTGCCCCAGCTGGT+TGG - chr5.3:29358697-29358716 MS.gene045626:CDS 60.0%
ACCAGCTGGGGCAGCATTGT+TGG + chr5.3:29358697-29358716 None:intergenic 60.0%
GTACCCTGCAGAAGAAGGGG+AGG - chr5.3:29358453-29358472 MS.gene045626:CDS 60.0%
TCCAACAATGCTGCCCCAGC+TGG - chr5.3:29358693-29358712 MS.gene045626:CDS 60.0%
!!! GCCCCAGCTGGTTGGTCTTT+TGG - chr5.3:29358705-29358724 MS.gene045626:CDS 60.0%


Chromosome Type Strat End Strand Name
chr5.3 gene 29357270 29358758 29357270 ID=MS.gene045626
chr5.3 mRNA 29357270 29358758 29357270 ID=MS.gene045626.t1;Parent=MS.gene045626
chr5.3 exon 29358632 29358758 29358632 ID=MS.gene045626.t1.exon1;Parent=MS.gene045626.t1
chr5.3 CDS 29358632 29358758 29358632 ID=cds.MS.gene045626.t1;Parent=MS.gene045626.t1
chr5.3 exon 29358214 29358526 29358214 ID=MS.gene045626.t1.exon2;Parent=MS.gene045626.t1
chr5.3 CDS 29358214 29358526 29358214 ID=cds.MS.gene045626.t1;Parent=MS.gene045626.t1
chr5.3 exon 29357270 29357576 29357270 ID=MS.gene045626.t1.exon3;Parent=MS.gene045626.t1
chr5.3 CDS 29357270 29357576 29357270 ID=cds.MS.gene045626.t1;Parent=MS.gene045626.t1
Gene Sequence

>MS.gene045626

ATGGCTCTCATTGGGTTGTTCTTCATGGTGTTTCTCACTATGTTTTCATCTGCTTATGGTTATGGTGGAGGATGGGTTAATGCACATGCAACTTTCTATGGAGGAAGTGATGCATCAGGAACAATGGGTATGCAAATGCAAAAATTATAATAAAGTTAACATTTTTATACTATTTAAGCAATTTGGACCAACCCCTTTTGACTAATATGTTTAATATTGAATTTTTTTTTAGGTGGTGCATGTGGATATGGAAACCTATACAGTCAAGGTTATGGAACAAACACTGCTGCTTTAAGCACAGCTTTGTTCAACAGTGGTTTGAGCTGTGGTTCTTGCTTTGAGATTAGGTGTGCTGGTGACCGTAAATGGTGTCTTCCTGGCTCTATTTTGGTCACTGCTACTAATTTCTGTCCACCAAACAATGCCTTGCCTAATAACAATGGAGGATGGTGTAACCCTCCTTTGCAACACTTTGATCTTGCTCAACCTGTTTTTCTTAGAATTGCTCAATACAAAGCTGGAATTGTTCCTGTTTCTTACAGAAGGTAAATTTTATAGTACTTTTTTTTTTCCTTCACTTTTTGTTGCATTTTGAGATTAAATTTGTGTAATGGGTTGGACCTTCATGTCACTTTCAACTTGTAAATGGTTTTTTTTTATTTTTATTTTTATTTTTATTTTTAATCACATGTATTTGAAAGTTTCCCTACTTTTTGTTTTATATTAGAGTGTAATTTCTTTTAGTTACAAGATTTTAACTTTATCTAGCTAGTTAATGGGGTTGGTAATTTTGTAGTTAAAGTACTGTATTTTTTTCTCTCTAAATGGGTTGATGAATGAAACTACACTATTAATTAACTTTTGAAGATTATTTATATGTATAATATTAAATTAAATTTTGTTATATTTGTTTGATGAAATTATCTACCTTTTTATATAGTACCCTTCACTGATAATTGTACCATTTCACCTCTCTAATAAATAATTTTAAATGTTTTTTTTCCAAAACAATAATTAATATTAGTACTTTGAACTTTGACATCAACAATTAAAAAATAAAATATTTTTTATTAAAAAAAGGACACTTATATAGAAAAGGAAGCAATGAATAACCAAGTTGTAAGTAATTTATACTTGTGTTTATAAAAAAGAAGTAATTTATTGTTGTGTGGATTTGTGTAGGGTACCCTGCAGAAGAAGGGGAGGAATTAGGTTCACAATCAATGGACATTCCTACTTCAACTTAGTTCTAGTAACAAATGTGGGTGGTGCTGGAGATGTACATTCAGTAGCTATTAAAGGGTCAAGAACAGGGTGGATGCCAATGTCTAGAAATTGGGGTCAAAATTGGCAAAGCAACAATTATCTTAATGGCCAAGCTTTGTCTTTCAAGGTTACAACAAGTGATGGCAAAACAGTCATTTCCAACAATGCTGCCCCAGCTGGTTGGTCTTTTGGTCAGACCTACACTGGTGCCCAATTCCGTTAG
Protein sequence

>MS.gene045626.t1

MALIGLFFMVFLTMFSSAYGYGGGWVNAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNSGLSCGSCFEIRCAGDRKWCLPGSILVTATNFCPPNNALPNNNGGWCNPPLQHFDLAQPVFLRIAQYKAGIVPVSYRRVPCRRRGGIRFTINGHSYFNLVLVTNVGGAGDVHSVAIKGSRTGWMPMSRNWGQNWQSNNYLNGQALSFKVTTSDGKTVISNNAAPAGWSFGQTYTGAQFR