AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene046208

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene046208.t1 MTR_1g037630 97.669 429 10 0 1 429 1 429 0.0 851
MS.gene046208.t1 MTR_3g014290 94.872 429 10 1 1 429 1 417 0.0 819
MS.gene046208.t1 MTR_8g039540 81.542 428 78 1 3 429 7 434 0.0 699
MS.gene046208.t1 MTR_3g100500 53.636 440 187 9 1 428 3 437 5.53e-143 415
MS.gene046208.t1 MTR_1g115210 34.857 350 210 8 90 428 144 486 3.14e-53 185
MS.gene046208.t1 MTR_3g097150 30.846 402 235 13 47 421 54 439 3.79e-52 181
MS.gene046208.t1 MTR_7g117430 35.143 350 212 6 90 428 139 484 6.52e-51 179
MS.gene046208.t1 MTR_3g053710 28.605 423 267 13 29 428 56 466 5.33e-47 168
MS.gene046208.t1 MTR_1g111350 31.343 402 242 10 46 428 81 467 7.11e-47 167
MS.gene046208.t1 MTR_4g007740 31.830 377 213 13 79 429 120 478 9.03e-46 165
MS.gene046208.t1 MTR_1g039270 34.097 349 215 7 90 428 126 469 3.42e-45 163
MS.gene046208.t1 MTR_2g028190 31.478 467 256 20 8 428 3 451 4.45e-45 162
MS.gene046208.t1 MTR_6g085010 34.393 346 206 10 93 428 157 491 3.89e-43 158
MS.gene046208.t1 MTR_8g103880 28.818 347 228 9 93 428 117 455 3.22e-41 152
MS.gene046208.t1 MTR_3g046300 32.620 374 207 11 90 428 95 458 2.16e-40 150
MS.gene046208.t1 MTR_5g038360 29.867 452 277 17 1 429 1 435 2.90e-39 146
MS.gene046208.t1 MTR_3g053980 29.909 438 257 15 29 428 60 485 6.11e-38 144
MS.gene046208.t1 MTR_0024s0040 30.425 424 255 16 31 429 1 409 8.23e-38 142
MS.gene046208.t1 MTR_0036s0110 28.505 428 265 15 28 429 29 441 5.00e-37 140
MS.gene046208.t1 MTR_5g091130 31.622 370 217 13 90 428 189 553 1.41e-36 141
MS.gene046208.t1 MTR_3g028120 28.571 434 266 17 23 429 21 437 1.71e-35 136
MS.gene046208.t1 MTR_5g080890 27.830 424 268 15 27 429 26 432 1.75e-35 136
MS.gene046208.t1 MTR_0036s0070 27.991 443 280 15 6 429 3 425 2.16e-35 135
MS.gene046208.t1 MTR_3g065160 29.282 362 220 15 94 429 76 427 2.25e-35 135
MS.gene046208.t1 MTR_7g062360 29.650 371 217 14 95 428 62 425 2.95e-35 135
MS.gene046208.t1 MTR_4g100990 29.925 401 211 15 93 428 75 470 1.05e-34 134
MS.gene046208.t1 MTR_5g080960 27.594 424 269 15 27 429 26 432 1.39e-34 134
MS.gene046208.t1 MTR_8g096990 26.471 442 290 15 5 429 7 430 3.40e-34 132
MS.gene046208.t1 MTR_7g105850 29.091 385 214 14 93 428 91 465 5.45e-33 130
MS.gene046208.t1 MTR_3g068000 28.382 377 222 15 92 428 73 441 5.18e-32 127
MS.gene046208.t1 MTR_0036s0050 27.617 449 283 16 6 429 3 434 8.59e-32 125
MS.gene046208.t1 MTR_5g077850 28.726 369 217 16 94 429 83 438 1.24e-31 125
MS.gene046208.t1 MTR_5g012490 27.845 413 225 15 79 428 67 469 4.17e-31 124
MS.gene046208.t1 MTR_5g044570 28.636 440 258 15 7 429 10 410 4.51e-31 123
MS.gene046208.t1 MTR_8g038280 26.932 453 278 19 5 429 7 434 1.73e-30 122
MS.gene046208.t1 MTR_5g008110 31.081 370 221 16 85 429 54 414 7.17e-30 120
MS.gene046208.t1 MTR_8g038310 28.000 425 247 16 5 409 7 392 1.17e-29 119
MS.gene046208.t1 MTR_2g059460 28.954 373 218 17 88 429 49 405 1.45e-29 119
MS.gene046208.t1 MTR_2g059490 28.453 362 233 14 88 429 54 409 2.09e-29 119
MS.gene046208.t1 MTR_5g008150 28.429 401 226 16 68 429 33 411 2.29e-27 113
MS.gene046208.t1 MTR_6g090290 27.171 449 285 18 3 429 7 435 1.14e-26 111
MS.gene046208.t1 MTR_8g038250 26.667 450 268 17 4 429 3 414 1.52e-26 110
MS.gene046208.t1 MTR_5g044770 26.684 386 247 16 27 391 26 396 1.98e-26 110
MS.gene046208.t1 MTR_5g077920 30.081 369 214 17 94 429 70 427 9.95e-26 108
MS.gene046208.t1 MTR_1g060750 28.451 355 205 16 93 429 52 375 3.46e-25 106
MS.gene046208.t1 MTR_2g067830 27.824 363 221 16 93 429 58 405 4.27e-25 106
MS.gene046208.t1 MTR_5g016260 24.700 417 252 20 38 429 53 432 9.67e-25 107
MS.gene046208.t1 MTR_5g016260 25.414 362 227 18 93 429 89 432 9.97e-25 107
MS.gene046208.t1 MTR_4g056420 25.728 412 252 19 57 429 41 437 3.89e-24 104
MS.gene046208.t1 MTR_2g084550 25.182 413 253 18 57 429 42 438 5.08e-24 104
MS.gene046208.t1 MTR_6g088760 25.290 431 267 18 11 413 17 420 9.27e-24 103
MS.gene046208.t1 MTR_2g070430 27.419 372 220 13 90 421 85 446 1.82e-23 102
MS.gene046208.t1 MTR_5g022880 28.610 374 204 17 93 428 113 461 1.34e-22 100
MS.gene046208.t1 MTR_4g045857 32.218 239 139 10 68 284 29 266 3.20e-22 96.7
MS.gene046208.t1 MTR_2g063110 25.275 455 242 21 53 424 65 504 3.71e-22 99.0
MS.gene046208.t1 MTR_4g095270 24.654 361 229 18 93 428 81 423 1.60e-21 97.4
MS.gene046208.t1 MTR_4g095270 24.654 361 229 18 93 428 81 423 2.15e-21 97.1
MS.gene046208.t1 MTR_2g055840 28.375 363 212 17 93 419 14 364 3.97e-21 94.7
MS.gene046208.t1 MTR_1g061940 26.923 364 212 16 42 364 30 380 4.87e-21 95.5
MS.gene046208.t1 MTR_7g080230 26.273 373 226 18 93 429 72 431 5.43e-21 95.5
MS.gene046208.t1 MTR_1g078240 25.737 373 230 18 93 429 70 431 8.52e-21 94.7
MS.gene046208.t1 MTR_2g105300 28.135 327 192 17 115 415 58 367 1.32e-20 93.2
MS.gene046208.t1 MTR_1g078240 25.067 371 234 16 93 429 70 430 1.38e-20 94.0
MS.gene046208.t1 MTR_5g008070 27.064 436 255 20 23 429 24 425 1.85e-20 93.2
MS.gene046208.t1 MTR_7g102750 24.934 377 226 18 93 429 82 441 4.62e-20 92.8
MS.gene046208.t1 MTR_7g021510 25.668 374 229 14 93 429 73 434 4.96e-20 92.4
MS.gene046208.t1 MTR_7g102750 27.019 322 185 16 93 377 82 390 1.75e-18 87.4
MS.gene046208.t1 MTR_1g078240 27.129 317 187 16 93 375 70 376 2.26e-18 86.7
MS.gene046208.t1 MTR_5g061690 26.039 361 217 12 99 428 108 449 4.34e-18 86.7
MS.gene046208.t1 MTR_4g109760 28.075 374 235 15 75 429 39 397 1.35e-17 84.7
MS.gene046208.t1 MTR_3g087780 26.230 366 213 17 99 428 106 450 4.78e-17 83.6
MS.gene046208.t1 MTR_4g023650 26.455 378 216 17 93 428 62 419 1.57e-16 81.6
MS.gene046208.t1 MTR_7g080230 27.035 344 205 18 119 429 31 361 3.79e-15 77.4
MS.gene046208.t1 MTR_3g006820 24.138 377 224 17 93 429 59 413 1.83e-14 75.1
MS.gene046208.t1 MTR_2g022450 22.059 408 264 15 68 427 13 414 3.26e-13 71.2
MS.gene046208.t1 MTR_3g096930 25.067 375 219 18 93 429 85 435 4.44e-13 71.2
MS.gene046208.t1 MTR_8g094590 25.231 432 257 24 37 429 21 425 1.52e-12 69.3
MS.gene046208.t1 MTR_8g094590 27.331 311 178 18 37 325 21 305 3.44e-12 67.4
MS.gene046208.t1 MTR_8g094590 27.019 322 183 19 37 332 21 316 4.99e-12 67.8
MS.gene046208.t1 MTR_1g072420 23.056 373 233 15 101 427 55 419 1.43e-11 66.2
MS.gene046208.t1 MTR_4g117090 23.358 411 247 16 78 427 38 441 2.64e-11 65.5
MS.gene046208.t1 MTR_3g087780 25.000 320 197 14 132 428 9 308 3.20e-11 65.1
MS.gene046208.t1 MTR_4g023630 24.934 381 218 18 93 428 62 419 4.01e-11 65.1
MS.gene046208.t1 MTR_3g087780 24.375 320 199 13 132 428 45 344 4.22e-11 64.7
MS.gene046208.t1 MTR_1g072380 23.881 402 216 18 93 427 57 435 9.09e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene046208.t1 AT5G07030 70.455 440 116 6 4 429 16 455 0.0 602
MS.gene046208.t1 AT3G54400 68.204 412 121 6 21 429 21 425 0.0 569
MS.gene046208.t1 AT1G09750 51.559 417 186 8 26 428 34 448 1.81e-140 409
MS.gene046208.t1 AT5G10770 30.679 427 258 13 29 429 60 474 4.80e-51 179
MS.gene046208.t1 AT1G01300 33.807 352 214 8 90 428 139 484 1.58e-50 178
MS.gene046208.t1 AT3G61820 35.393 356 209 7 90 428 132 483 3.48e-50 177
MS.gene046208.t1 AT3G25700 32.598 408 234 13 57 428 47 449 4.58e-50 176
MS.gene046208.t1 AT2G03200 30.899 356 214 9 90 421 104 451 4.03e-49 174
MS.gene046208.t1 AT5G10760 32.697 419 246 12 29 428 63 464 5.61e-48 171
MS.gene046208.t1 AT3G20015 33.046 348 219 6 90 428 128 470 1.13e-47 170
MS.gene046208.t1 AT3G18490 33.056 360 221 10 80 428 150 500 1.06e-44 162
MS.gene046208.t1 AT1G25510 30.155 388 239 10 64 428 105 483 3.64e-42 155
MS.gene046208.t1 AT3G52500 30.909 385 212 13 93 429 90 468 2.33e-40 150
MS.gene046208.t1 AT1G79720 30.585 376 220 14 79 428 122 482 8.53e-40 149
MS.gene046208.t1 AT1G66180 30.424 401 234 18 63 429 38 427 1.67e-38 144
MS.gene046208.t1 AT5G45120 30.000 400 212 15 93 428 83 478 3.11e-38 144
MS.gene046208.t1 AT5G37540 29.574 399 232 18 68 428 51 438 1.25e-36 139
MS.gene046208.t1 AT2G39710 30.997 371 210 16 92 424 64 426 6.14e-36 137
MS.gene046208.t1 AT1G64830 28.873 426 260 16 27 429 24 429 7.88e-35 134
MS.gene046208.t1 AT3G59080 28.246 439 246 14 54 428 99 532 1.12e-32 130
MS.gene046208.t1 AT2G42980 29.534 386 234 13 76 428 144 524 1.29e-32 129
MS.gene046208.t1 AT5G33340 27.446 419 272 15 28 428 30 434 1.09e-30 123
MS.gene046208.t1 AT5G02190 28.883 367 215 15 102 428 82 442 3.26e-29 119
MS.gene046208.t1 AT5G22850 25.416 421 260 18 48 429 36 441 1.75e-27 114
MS.gene046208.t1 AT4G30040 28.141 398 235 16 55 421 48 425 2.50e-27 113
MS.gene046208.t1 AT3G02740 27.833 406 240 19 58 429 54 440 3.84e-27 113
MS.gene046208.t1 AT1G08210 27.644 416 255 16 48 429 38 441 7.30e-27 112
MS.gene046208.t1 AT2G23945 26.442 416 255 17 48 428 49 448 7.41e-27 112
MS.gene046208.t1 AT1G08210 27.644 416 255 16 48 429 72 475 8.97e-27 112
MS.gene046208.t1 AT3G12700 28.125 416 250 16 47 429 62 461 9.51e-27 112
MS.gene046208.t1 AT1G08210 27.644 416 255 16 48 429 86 489 9.82e-27 112
MS.gene046208.t1 AT3G02740 28.571 371 216 18 93 429 10 365 1.32e-26 111
MS.gene046208.t1 AT4G30030 27.056 377 241 14 69 428 60 419 1.80e-26 110
MS.gene046208.t1 AT3G59080 27.294 425 232 13 54 428 99 496 7.74e-26 109
MS.gene046208.t1 AT1G08210 29.268 369 219 14 48 383 38 397 7.15e-25 107
MS.gene046208.t1 AT5G36260 25.272 368 233 17 93 429 78 434 4.49e-24 104
MS.gene046208.t1 AT5G43100 25.067 371 230 17 86 429 69 418 7.84e-24 103
MS.gene046208.t1 AT5G43100 25.549 364 223 17 93 429 76 418 8.74e-24 104
MS.gene046208.t1 AT3G50050 26.849 365 219 18 93 429 93 437 4.29e-22 99.4
MS.gene046208.t1 AT2G28030 26.774 310 193 11 93 388 61 350 4.79e-22 97.8
MS.gene046208.t1 AT2G28040 27.221 349 204 15 87 415 50 368 6.34e-22 97.4
MS.gene046208.t1 AT4G16563 26.932 427 225 15 79 428 75 491 6.84e-22 98.2
MS.gene046208.t1 AT2G28040 27.221 349 204 15 87 415 59 377 1.14e-21 96.7
MS.gene046208.t1 AT1G05840 26.810 373 224 17 93 429 80 439 1.66e-21 97.1
MS.gene046208.t1 AT2G35615 26.940 464 269 22 7 429 10 444 1.74e-21 96.7
MS.gene046208.t1 AT2G36670 23.488 430 273 17 42 429 43 458 3.84e-21 95.9
MS.gene046208.t1 AT1G31450 27.002 437 258 19 30 429 30 442 6.64e-21 94.7
MS.gene046208.t1 AT2G36670 24.397 373 232 16 93 429 34 392 7.79e-21 94.7
MS.gene046208.t1 AT2G36670 24.397 373 232 16 93 429 34 392 7.79e-21 94.7
MS.gene046208.t1 AT1G65240 25.326 383 239 18 79 429 60 427 1.15e-20 94.4
MS.gene046208.t1 AT2G36670 24.397 373 232 16 93 429 105 463 1.33e-20 94.4
MS.gene046208.t1 AT2G28010 25.439 342 220 12 87 415 59 378 2.29e-20 92.8
MS.gene046208.t1 AT2G28225 27.479 353 202 17 93 421 67 389 1.14e-19 90.9
MS.gene046208.t1 AT3G51350 25.798 376 214 16 93 428 102 452 2.51e-18 87.4
MS.gene046208.t1 AT3G25700 34.659 176 90 8 57 210 47 219 1.09e-17 84.3
MS.gene046208.t1 AT2G28220 25.507 345 208 14 93 415 67 384 1.71e-16 81.3
MS.gene046208.t1 AT3G51360 24.044 366 229 13 93 428 99 445 5.46e-15 77.4
MS.gene046208.t1 AT3G51360 23.836 365 231 12 93 428 5 351 6.24e-15 76.6
MS.gene046208.t1 AT3G51360 23.836 365 231 12 93 428 89 435 7.49e-15 76.6
MS.gene046208.t1 AT2G17760 23.604 394 233 18 76 428 83 449 5.07e-14 74.3
MS.gene046208.t1 AT1G77480 26.190 378 212 21 93 428 67 419 7.80e-14 73.6
MS.gene046208.t1 AT1G77480 26.190 378 212 21 93 428 67 419 8.93e-14 73.6
MS.gene046208.t1 AT4G12920 22.034 354 234 13 93 428 58 387 9.82e-14 72.8
MS.gene046208.t1 AT4G33490 24.064 374 212 17 93 422 60 405 1.13e-13 72.8
MS.gene046208.t1 AT4G33490 27.715 267 147 14 93 336 57 300 3.52e-13 71.2
MS.gene046208.t1 AT3G51360 24.340 341 209 13 93 403 99 420 1.88e-12 69.3
MS.gene046208.t1 AT3G51360 24.340 341 209 13 93 403 89 410 2.34e-12 68.9
MS.gene046208.t1 AT3G51360 24.917 301 179 12 93 364 89 371 4.27e-12 67.8
MS.gene046208.t1 AT3G51360 25.676 296 171 13 99 364 105 381 4.31e-12 67.8
MS.gene046208.t1 AT3G51360 25.954 262 151 11 93 330 99 341 3.68e-11 64.7
MS.gene046208.t1 AT1G03220 23.488 430 250 17 41 427 24 417 5.29e-11 64.7
MS.gene046208.t1 AT1G44130 25.195 385 205 19 93 428 49 399 5.86e-11 64.3
MS.gene046208.t1 AT1G03230 23.988 346 202 14 137 427 79 418 8.28e-11 63.9

Find 138 sgRNAs with CRISPR-Local

Find 228 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGTTAACTTGGAAGCAATT+AGG 0.215956 3.3:-9236787 MS.gene046208:CDS
ATGTGGACTGATAGAGGTTT+TGG 0.221853 3.3:+9236939 None:intergenic
TACATTGTTAGGGCTAAAAT+TGG 0.237202 3.3:-9239295 MS.gene046208:CDS
AAAGTCCAACTTACATTGTT+AGG 0.240995 3.3:-9239306 MS.gene046208:CDS
TCCCATGAAAGTGGCTTTGA+TGG 0.283362 3.3:+9239439 None:intergenic
TTCAAGTCTCTTAACTTCTC+TGG 0.284577 3.3:-9236896 MS.gene046208:CDS
AGTGGCTTTGATGGCCTAAA+TGG 0.286534 3.3:+9239448 None:intergenic
GTTATTGTGGGTACAACTAT+TGG 0.294174 3.3:+9236349 None:intergenic
TTGTCTTGGACATCACATTT+GGG 0.295714 3.3:+9239514 None:intergenic
TGCCCCACCACAAGGTCTAT+TGG 0.300448 3.3:-9236999 MS.gene046208:CDS
TAATAGAGTGATGATCTTCT+AGG 0.307781 3.3:+9236809 None:intergenic
TTAGCCCATGTTCCCCATTT+AGG 0.313010 3.3:-9239462 MS.gene046208:CDS
ACTTCAATTCCTTGATAGTT+TGG 0.314174 3.3:-9239377 MS.gene046208:CDS
GCCGGTACCATCTTTGATTC+AGG 0.315313 3.3:-9236704 MS.gene046208:intron
TGTTAACTTGGAAGCAATTA+GGG 0.316746 3.3:-9236786 MS.gene046208:CDS
TTGAAGTCTAGTTGTGTCTT+TGG 0.320386 3.3:+9239393 None:intergenic
GCCCCACCACAAGGTCTATT+GGG 0.322798 3.3:-9236998 MS.gene046208:CDS
ACCACAAGGTCTATTGGGCT+TGG 0.324083 3.3:-9236993 MS.gene046208:CDS
ATTGTCTTGGACATCACATT+TGG 0.331624 3.3:+9239513 None:intergenic
GCAACACCAACCCTAGAGTT+AGG 0.342924 3.3:+9236154 None:intergenic
ATCCTCTTGGGCTGAGCAAC+AGG 0.345436 3.3:+9236857 None:intergenic
TGGGGTTTAGTCCTTGGACT+AGG 0.351891 3.3:+9239533 None:intergenic
TCCACCTCAAACTTTGCTTT+TGG 0.353103 3.3:-9239269 MS.gene046208:CDS
CACATTTGGGGTTTAGTCCT+TGG 0.354918 3.3:+9239527 None:intergenic
TTGTGTCTTTGGCTTGCATT+TGG 0.373872 3.3:+9239404 None:intergenic
TTCCTCTATTGCTGCTAACT+TGG 0.399833 3.3:-9237101 MS.gene046208:CDS
CAACACCGAGTTCACGTTAT+CGG 0.406159 3.3:+9236228 None:intergenic
TCAAGTCTCTTAACTTCTCT+GGG 0.406816 3.3:-9236895 MS.gene046208:CDS
AGGGATGTCACTGTGAGCTT+TGG 0.406981 3.3:+9236400 None:intergenic
TTATTGTGGGTACAACTATT+GGG 0.409081 3.3:+9236350 None:intergenic
GGCCATCAAAGCCACTTTCA+TGG 0.410623 3.3:-9239441 MS.gene046208:CDS
GAGGGAAAGTGTGAGTTTCA+TGG 0.412360 3.3:+9239573 None:intergenic
AACACCGAGTTCACGTTATC+GGG 0.416344 3.3:+9236229 None:intergenic
TTCTCTGGGTCTTTGAGACT+TGG 0.418986 3.3:-9236881 MS.gene046208:CDS
GGTCTATTGGGCTTGGGCCG+AGG 0.426354 3.3:-9236986 MS.gene046208:CDS
AGGGGTATACTTAATCCTCT+TGG 0.430562 3.3:+9236844 None:intergenic
TCAACTACATTTAAGAATGT+TGG 0.430707 3.3:-9239163 MS.gene046208:CDS
CTTGGACTAGGGAGAGGAAT+AGG 0.438297 3.3:+9239545 None:intergenic
GGATTAAACGCCAATGCAGC+TGG 0.439884 3.3:+9236737 None:intergenic
ACGAGTTCCGGCGAAGAGTT+GGG 0.449433 3.3:-9236423 MS.gene046208:CDS
TCGCGGTCAGAGACGAGTTC+CGG 0.451366 3.3:-9236435 MS.gene046208:CDS
CCGAATGTGTAGCTAGGAAC+TGG 0.451414 3.3:+9237049 None:intergenic
AAGTCCAACTTACATTGTTA+GGG 0.456447 3.3:-9239305 MS.gene046208:CDS
GTGGCTTTGATGGCCTAAAT+GGG 0.457090 3.3:+9239449 None:intergenic
TCATTGATGTCCCTAACTCT+AGG 0.457703 3.3:-9236165 MS.gene046208:CDS
CCACAAGGTCTATTGGGCTT+GGG 0.462842 3.3:-9236992 MS.gene046208:CDS
GTTATCGGGCGCGGCTGCCA+TGG 0.467214 3.3:+9236243 None:intergenic
GGGGTTTAGTCCTTGGACTA+GGG 0.468206 3.3:+9239534 None:intergenic
TGTCTTTGGCTTGCATTTGG+AGG 0.469936 3.3:+9239407 None:intergenic
TGCTGCTCCTGAATGCAAAC+AGG 0.470735 3.3:-9239137 MS.gene046208:intron
GACGAGTTCCGGCGAAGAGT+TGG 0.471255 3.3:-9236424 MS.gene046208:CDS
ACAATAACATTCATGTTCTC+TGG 0.476619 3.3:-9236334 MS.gene046208:CDS
TACCAAGTTAGCAGCAATAG+AGG 0.476643 3.3:+9237099 None:intergenic
GGGGTATACTTAATCCTCTT+GGG 0.477205 3.3:+9236845 None:intergenic
ATCACTCTATTATGTTAACT+TGG 0.480477 3.3:-9236798 MS.gene046208:CDS
TGCCTGCGGTGCTATGTATA+AGG 0.481118 3.3:+9236281 None:intergenic
TTCTAGCTACCAAACTATCA+AGG 0.482357 3.3:+9239368 None:intergenic
TAGAGGAACTGCCATAGGTT+AGG 0.483289 3.3:+9237116 None:intergenic
ATTCCTTGCACTGCTTGTGA+TGG 0.484236 3.3:-9239217 MS.gene046208:CDS
TGCAATTTCAACCTAACCTA+TGG 0.486060 3.3:-9237127 MS.gene046208:CDS
CATGAGCTCACACCACAACT+AGG 0.490130 3.3:+9237148 None:intergenic
AGCATGTGTCAAACCCTCCT+AGG 0.490363 3.3:+9236380 None:intergenic
TTAGCCCTAACAATGTAAGT+TGG 0.493596 3.3:+9239301 None:intergenic
GCCATCAAAGCCACTTTCAT+GGG 0.495343 3.3:-9239440 MS.gene046208:CDS
CGATATTCCTCCAGCTGCAT+TGG 0.496924 3.3:-9236747 MS.gene046208:CDS
TTTGAGACAAAAGTGACAAC+GGG 0.499233 3.3:+9236963 None:intergenic
CCAGTTCCTAGCTACACATT+CGG 0.501249 3.3:-9237049 MS.gene046208:CDS
CATTGATGTCCCTAACTCTA+GGG 0.503024 3.3:-9236164 MS.gene046208:CDS
AAGAGAATGTGGACTGATAG+AGG 0.503256 3.3:+9236933 None:intergenic
TCTCTGACCGCGACATAGAC+TGG 0.507592 3.3:+9236445 None:intergenic
ACAAAAGTGACAACGGGCCT+CGG 0.507840 3.3:+9236969 None:intergenic
GATGGCCTAAATGGGGAACA+TGG 0.508158 3.3:+9239457 None:intergenic
TTCTAGGGTTCTTGAGAAGA+GGG 0.513267 3.3:+9236825 None:intergenic
ACACTTTCTTCCCATGAAAG+TGG 0.514469 3.3:+9239430 None:intergenic
AACTTGGAAGCAATTAGGGT+TGG 0.515766 3.3:-9236782 MS.gene046208:CDS
CAACACCAACCCTAGAGTTA+GGG 0.517242 3.3:+9236155 None:intergenic
TCAATTGTACCTATTGCCTC+TGG 0.521279 3.3:-9239343 MS.gene046208:CDS
ATCTGTCTACCAGAGGCAAT+AGG 0.521748 3.3:+9239334 None:intergenic
TTGGCGTTTAATCCGACCAC+TGG 0.521822 3.3:-9236728 MS.gene046208:CDS
TACCAGGTACCGTGTTTACT+CGG 0.522295 3.3:-9236477 MS.gene046208:intron
AATAGAGTGATGATCTTCTA+GGG 0.533715 3.3:+9236810 None:intergenic
CTTCTAGGGTTCTTGAGAAG+AGG 0.543537 3.3:+9236824 None:intergenic
AGAGAACATGAATGTTATTG+TGG 0.546745 3.3:+9236336 None:intergenic
TTAGTCCTTGGACTAGGGAG+AGG 0.549316 3.3:+9239539 None:intergenic
CTCACACCACAACTAGGGTT+AGG 0.549658 3.3:+9237154 None:intergenic
GATGTCCCTAACTCTAGGGT+TGG 0.549992 3.3:-9236160 MS.gene046208:CDS
ATGGTACCGGCTCCAGTGGT+CGG 0.555264 3.3:+9236716 None:intergenic
CGAGTTCACGTTATCGGGCG+CGG 0.555456 3.3:+9236234 None:intergenic
ATACTAGTAATGATGCTGCT+TGG 0.557490 3.3:-9239240 MS.gene046208:CDS
CTATTCCTCTCCCTAGTCCA+AGG 0.561125 3.3:-9239544 MS.gene046208:CDS
ACCTGAATCAAAGATGGTAC+CGG 0.564438 3.3:+9236703 None:intergenic
AAGCTCACAGTGACATCCCT+AGG 0.564717 3.3:-9236397 MS.gene046208:CDS
GAGAACATGAATGTTATTGT+GGG 0.566607 3.3:+9236337 None:intergenic
AGGAACTGGATCAGTGGCTA+AGG 0.567544 3.3:+9237063 None:intergenic
AGCCCAATAGACCTTGTGGT+GGG 0.567593 3.3:+9236996 None:intergenic
TGTCTTGGACATCACATTTG+GGG 0.569858 3.3:+9239515 None:intergenic
CGCGCCCGATAACGTGAACT+CGG 0.569919 3.3:-9236233 MS.gene046208:CDS
TTTAATCCGACCACTGGAGC+CGG 0.572128 3.3:-9236722 MS.gene046208:CDS
AAGTTAAGAGACTTGAAACT+TGG 0.573810 3.3:+9236902 None:intergenic
CAGGTACCTAACCCTAGTTG+TGG 0.574866 3.3:-9237160 MS.gene046208:CDS
GCATGTGTCAAACCCTCCTA+GGG 0.576135 3.3:+9236381 None:intergenic
GGGAGAGGAATAGGAACAAG+AGG 0.576994 3.3:+9239554 None:intergenic
GGAGTGTTGAGCCATTGTCT+TGG 0.579994 3.3:+9239500 None:intergenic
ATAGCCAAAAGCAAAGTTTG+AGG 0.580224 3.3:+9239265 None:intergenic
GCTTTGGCCCAACTCTTCGC+CGG 0.583717 3.3:+9236416 None:intergenic
GGTGTTACCTGAATCAAAGA+TGG 0.585226 3.3:+9236697 None:intergenic
AAAACACGTGGTGCTGCCTG+CGG 0.586939 3.3:+9236267 None:intergenic
GCCCAATAGACCTTGTGGTG+GGG 0.592501 3.3:+9236997 None:intergenic
ATCCTTATACATAGCACCGC+AGG 0.593768 3.3:-9236283 MS.gene046208:CDS
TGGCAAACAATAAGAGAATG+TGG 0.599140 3.3:+9236922 None:intergenic
GACCTGTTGCTCAGCCCAAG+AGG 0.602178 3.3:-9236859 MS.gene046208:CDS
GGCACTTCTGCCCCACCACA+AGG 0.603196 3.3:-9237007 MS.gene046208:CDS
GGCTGCCATGGCAAAACACG+TGG 0.604639 3.3:+9236255 None:intergenic
ACACAACCGAATGTGTAGCT+AGG 0.605985 3.3:+9237043 None:intergenic
GCCAAAAGCAAAGTTTGAGG+TGG 0.608306 3.3:+9239268 None:intergenic
AAAGATGGTACCGGCTCCAG+TGG 0.608353 3.3:+9236712 None:intergenic
ATGAGCTCACACCACAACTA+GGG 0.616988 3.3:+9237149 None:intergenic
AAGCCCAATAGACCTTGTGG+TGG 0.617029 3.3:+9236995 None:intergenic
TGCAACTAGCCGAGTAAACA+CGG 0.620584 3.3:+9236468 None:intergenic
CAACCATCACAAGCAGTGCA+AGG 0.621327 3.3:+9239214 None:intergenic
AAATGTGATGTCCAAGACAA+TGG 0.621832 3.3:-9239511 MS.gene046208:CDS
TGGTGGGGCAGAAGTGCCTG+TGG 0.622551 3.3:+9237012 None:intergenic
CCCAAGCCCAATAGACCTTG+TGG 0.625674 3.3:+9236992 None:intergenic
ATGGCCTAAATGGGGAACAT+GGG 0.626148 3.3:+9239458 None:intergenic
CTCACAGTGACATCCCTAGG+AGG 0.629537 3.3:-9236394 MS.gene046208:CDS
AGCAATAGAGGAACTGCCAT+AGG 0.635860 3.3:+9237111 None:intergenic
GGAGAGGAATAGGAACAAGA+GGG 0.641689 3.3:+9239555 None:intergenic
TCACAGTGACATCCCTAGGA+GGG 0.649521 3.3:-9236393 MS.gene046208:CDS
TCTAGGGTTCTTGAGAAGAG+GGG 0.652701 3.3:+9236826 None:intergenic
TGGCTTTGATGGCCTAAATG+GGG 0.655766 3.3:+9239450 None:intergenic
GTTTGAGACAAAAGTGACAA+CGG 0.666616 3.3:+9236962 None:intergenic
TTAAACGCCAATGCAGCTGG+AGG 0.669097 3.3:+9236740 None:intergenic
TTGTATGATCTGTCTACCAG+AGG 0.671550 3.3:+9239327 None:intergenic
GTAGCTAGGAACTGGATCAG+TGG 0.674788 3.3:+9237057 None:intergenic
AGTTGCACCAGTCTATGTCG+CGG 0.693109 3.3:-9236452 MS.gene046208:CDS
TGTATAAGGATGTTGTCTTG+TGG 0.694390 3.3:+9236295 None:intergenic
TAGGGACATCAATGAGCACA+CGG 0.705781 3.3:+9236173 None:intergenic
GGACATCAATGAGCACACGG+TGG 0.780138 3.3:+9236176 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATATTTTAGTAAAACTTA+GGG + chr3.3:9237749-9237768 None:intergenic 10.0%
!!! AATATTACAATTTTTTATGA+AGG + chr3.3:9237005-9237024 None:intergenic 10.0%
!! AATTATTAGAATAAATACCT+TGG + chr3.3:9236974-9236993 None:intergenic 15.0%
!! ATTACTAATTTCATAATGAA+AGG - chr3.3:9237983-9238002 MS.gene046208:intron 15.0%
!! TTACTAATTTCATAATGAAA+GGG - chr3.3:9237984-9238003 MS.gene046208:intron 15.0%
!!! ATCAACTTAGATTTTTAAAT+TGG + chr3.3:9236856-9236875 None:intergenic 15.0%
!!! ATTAACTTGAAGAATTTAAT+TGG + chr3.3:9237710-9237729 None:intergenic 15.0%
!!! CAAATATTTTAGTAAAACTT+AGG + chr3.3:9237750-9237769 None:intergenic 15.0%
!!! CTAAGTTTTACTAAAATATT+TGG - chr3.3:9237748-9237767 MS.gene046208:intron 15.0%
!!! CTACTTAAATTATTTTTACT+TGG - chr3.3:9237896-9237915 MS.gene046208:intron 15.0%
!!! TATAACATAACCTATTTTTT+TGG + chr3.3:9237853-9237872 None:intergenic 15.0%
!!! TCAACTTAGATTTTTAAATT+GGG + chr3.3:9236855-9236874 None:intergenic 15.0%
!!! TTTATTTTGTTTCATTTTTC+AGG - chr3.3:9238527-9238546 MS.gene046208:intron 15.0%
!! AAAAAAAATATGTAAGAGCT+TGG + chr3.3:9236887-9236906 None:intergenic 20.0%
!! AAAAATGTTCATGAAGAAAA+AGG + chr3.3:9236926-9236945 None:intergenic 20.0%
!! AAAGAATCATGATATGATTA+TGG + chr3.3:9239191-9239210 None:intergenic 20.0%
!! AAATGATGCAATTGTAATTA+TGG - chr3.3:9236771-9236790 MS.gene046208:CDS 20.0%
!! AATTGTTGTACCAAAAAAAT+AGG - chr3.3:9237840-9237859 MS.gene046208:intron 20.0%
!! ATTTATTGTTAAACATTACC+AGG - chr3.3:9239213-9239232 MS.gene046208:CDS 20.0%
!! TAAATTGAACTAAGTTTAGT+TGG - chr3.3:9238344-9238363 MS.gene046208:intron 20.0%
!! TGAATTGATATAACTTATCA+TGG + chr3.3:9238464-9238483 None:intergenic 20.0%
!! TTAAAATAGAAATATGACAG+TGG + chr3.3:9237512-9237531 None:intergenic 20.0%
!! TTATATGCAAAATCTATTCA+TGG - chr3.3:9237036-9237055 MS.gene046208:CDS 20.0%
!!! AATATTTTGGATTCATAGAT+TGG + chr3.3:9238089-9238108 None:intergenic 20.0%
!!! ACATAAAAATTTGTTTGAAC+TGG - chr3.3:9237610-9237629 MS.gene046208:intron 20.0%
!!! ATATTTTGGATTCATAGATT+GGG + chr3.3:9238088-9238107 None:intergenic 20.0%
!!! CAACTTAGATTTTTAAATTG+GGG + chr3.3:9236854-9236873 None:intergenic 20.0%
!!! CAATGTTTTAAAAATGAGAT+AGG + chr3.3:9238491-9238510 None:intergenic 20.0%
!!! CTATCTCATTTTTAAAACAT+TGG - chr3.3:9238489-9238508 MS.gene046208:intron 20.0%
!!! GTTTTGTTAAAAAATTACGA+AGG - chr3.3:9236715-9236734 MS.gene046208:CDS 20.0%
!!! TATAAAAGTTTTAGATGTCT+TGG + chr3.3:9236808-9236827 None:intergenic 20.0%
!!! TTAAATGTAGTTGATTTTTC+AGG + chr3.3:9236537-9236556 None:intergenic 20.0%
!!! TTCTTCATGAACATTTTTTT+CGG - chr3.3:9236928-9236947 MS.gene046208:CDS 20.0%
!!! TTGTTTTCGTGTTTTTATAT+TGG - chr3.3:9236636-9236655 MS.gene046208:intron 20.0%
!!! TTTTGCATATAATCTATCTT+TGG + chr3.3:9237259-9237278 None:intergenic 20.0%
! AACTAGAATTCAATTCTACT+TGG + chr3.3:9238320-9238339 None:intergenic 25.0%
! AGTCATCATGGTTAAAAAAT+TGG - chr3.3:9238190-9238209 MS.gene046208:intron 25.0%
! ATCACTCTATTATGTTAACT+TGG - chr3.3:9238908-9238927 MS.gene046208:intron 25.0%
! GAATAAACCAACTGATAAAT+CGG + chr3.3:9238253-9238272 None:intergenic 25.0%
! GACAAAATAATGAGTATCTT+TGG + chr3.3:9237490-9237509 None:intergenic 25.0%
! GGTTTATTATGGTTTAGTAA+TGG - chr3.3:9238415-9238434 MS.gene046208:intron 25.0%
! TAATAAACCAACCAATGTAT+TGG + chr3.3:9238404-9238423 None:intergenic 25.0%
! TCAACTACATTTAAGAATGT+TGG - chr3.3:9236543-9236562 MS.gene046208:intron 25.0%
!! TGTCGAATATTTGTTGAAAA+AGG - chr3.3:9237113-9237132 MS.gene046208:CDS 25.0%
!!! AACAGTGAAAGATTTGTTTT+GGG - chr3.3:9237638-9237657 MS.gene046208:intron 25.0%
!!! AATGAGTTATTTTTACTCCA+AGG - chr3.3:9236954-9236973 MS.gene046208:CDS 25.0%
!!! ATACATTGGTTGGTTTATTA+TGG - chr3.3:9238404-9238423 MS.gene046208:intron 25.0%
!!! TTTTCGTGTTTTTATATTGG+CGG - chr3.3:9236639-9236658 MS.gene046208:intron 25.0%
AAAGTCCAACTTACATTGTT+AGG - chr3.3:9236400-9236419 MS.gene046208:CDS 30.0%
AAGTCCAACTTACATTGTTA+GGG - chr3.3:9236401-9236420 MS.gene046208:CDS 30.0%
AAGTTAAGAGACTTGAAACT+TGG + chr3.3:9238807-9238826 None:intergenic 30.0%
AATAGAGTGATGATCTTCTA+GGG + chr3.3:9238899-9238918 None:intergenic 30.0%
AATTAGTAATTACCCTTCCA+CGG + chr3.3:9237973-9237992 None:intergenic 30.0%
ACAATAACATTCATGTTCTC+TGG - chr3.3:9239372-9239391 MS.gene046208:CDS 30.0%
AGAGAACATGAATGTTATTG+TGG + chr3.3:9239373-9239392 None:intergenic 30.0%
ATAACTTATCATGGTTCAGT+TGG + chr3.3:9238455-9238474 None:intergenic 30.0%
GAGAACATGAATGTTATTGT+GGG + chr3.3:9239372-9239391 None:intergenic 30.0%
TAATAGAGTGATGATCTTCT+AGG + chr3.3:9238900-9238919 None:intergenic 30.0%
TACATTGTTAGGGCTAAAAT+TGG - chr3.3:9236411-9236430 MS.gene046208:CDS 30.0%
TCAAAAATCGACCAATACAT+TGG - chr3.3:9238390-9238409 MS.gene046208:intron 30.0%
TTATTGTGGGTACAACTATT+GGG + chr3.3:9239359-9239378 None:intergenic 30.0%
TTTAACCATGATGACTTCAT+TGG + chr3.3:9238186-9238205 None:intergenic 30.0%
! AAATTGACCGATTTATCAGT+TGG - chr3.3:9238243-9238262 MS.gene046208:intron 30.0%
! ACTTCAATTCCTTGATAGTT+TGG - chr3.3:9236329-9236348 MS.gene046208:CDS 30.0%
! ATGTTAACTTGGAAGCAATT+AGG - chr3.3:9238919-9238938 MS.gene046208:intron 30.0%
! GCACATAGCTTTCAATATTT+TGG + chr3.3:9238102-9238121 None:intergenic 30.0%
! TGTTAACTTGGAAGCAATTA+GGG - chr3.3:9238920-9238939 MS.gene046208:intron 30.0%
! TTTTTCCAATGAAGTCATCA+TGG - chr3.3:9238178-9238197 MS.gene046208:intron 30.0%
!! CAACAGTGAAAGATTTGTTT+TGG - chr3.3:9237637-9237656 MS.gene046208:intron 30.0%
!! CTAAGAGTATATTTTCATGC+CGG + chr3.3:9239047-9239066 None:intergenic 30.0%
!!! TTTTTTACCTGTTTGCATTC+AGG + chr3.3:9236579-9236598 None:intergenic 30.0%
AAATCGACCAATACATTGGT+TGG - chr3.3:9238394-9238413 MS.gene046208:intron 35.0%
AAATGTGATGTCCAAGACAA+TGG - chr3.3:9236195-9236214 MS.gene046208:CDS 35.0%
ATACTAGTAATGATGCTGCT+TGG - chr3.3:9236466-9236485 MS.gene046208:CDS 35.0%
ATAGCCAAAAGCAAAGTTTG+AGG + chr3.3:9236444-9236463 None:intergenic 35.0%
ATTGTCTTGGACATCACATT+TGG + chr3.3:9236196-9236215 None:intergenic 35.0%
GTTATTGTGGGTACAACTAT+TGG + chr3.3:9239360-9239379 None:intergenic 35.0%
TCAAGTCTCTTAACTTCTCT+GGG - chr3.3:9238811-9238830 MS.gene046208:intron 35.0%
TCATAATGAAAGGGACTACA+AGG - chr3.3:9237993-9238012 MS.gene046208:intron 35.0%
TGCAATTTCAACCTAACCTA+TGG - chr3.3:9238579-9238598 MS.gene046208:intron 35.0%
TGGCAAACAATAAGAGAATG+TGG + chr3.3:9238787-9238806 None:intergenic 35.0%
TGTATAAGGATGTTGTCTTG+TGG + chr3.3:9239414-9239433 None:intergenic 35.0%
TTAGCCCTAACAATGTAAGT+TGG + chr3.3:9236408-9236427 None:intergenic 35.0%
TTCAAGTCTCTTAACTTCTC+TGG - chr3.3:9238810-9238829 MS.gene046208:intron 35.0%
TTGAAGTCTAGTTGTGTCTT+TGG + chr3.3:9236316-9236335 None:intergenic 35.0%
TTGTCTTGGACATCACATTT+GGG + chr3.3:9236195-9236214 None:intergenic 35.0%
! ATCAGTTGGTTTATTCTCGA+TGG - chr3.3:9238257-9238276 MS.gene046208:intron 35.0%
! ATGTTTTGTCAACTAGCTAG+TGG - chr3.3:9237063-9237082 MS.gene046208:CDS 35.0%
! CAGTTGTGATTTGTACATTG+TGG + chr3.3:9237564-9237583 None:intergenic 35.0%
! GTTTGAGACAAAAGTGACAA+CGG + chr3.3:9238747-9238766 None:intergenic 35.0%
! TTCTAGCTACCAAACTATCA+AGG + chr3.3:9236341-9236360 None:intergenic 35.0%
! TTTGAGACAAAAGTGACAAC+GGG + chr3.3:9238746-9238765 None:intergenic 35.0%
!! TCAAACTTTGCTTTTGGCTA+TGG - chr3.3:9236443-9236462 MS.gene046208:CDS 35.0%
AACTTGGAAGCAATTAGGGT+TGG - chr3.3:9238924-9238943 MS.gene046208:intron 40.0%
ACACTTTCTTCCCATGAAAG+TGG + chr3.3:9236279-9236298 None:intergenic 40.0%
ACCTGAATCAAAGATGGTAC+CGG + chr3.3:9239006-9239025 None:intergenic 40.0%
ATCGAAGCAGTCGTCTTAAT+CGG - chr3.3:9238213-9238232 MS.gene046208:intron 40.0%
CATTGATGTCCCTAACTCTA+GGG - chr3.3:9239542-9239561 MS.gene046208:CDS 40.0%
GGCTAAAAACATGGATCACT+TGG + chr3.3:9236230-9236249 None:intergenic 40.0%
GGGGTATACTTAATCCTCTT+GGG + chr3.3:9238864-9238883 None:intergenic 40.0%
GGTTGTGTTTCAAAAACCAC+AGG - chr3.3:9238678-9238697 MS.gene046208:intron 40.0%
TACCAAGTTAGCAGCAATAG+AGG + chr3.3:9238610-9238629 None:intergenic 40.0%
TCAATTGTACCTATTGCCTC+TGG - chr3.3:9236363-9236382 MS.gene046208:CDS 40.0%
TCATTGATGTCCCTAACTCT+AGG - chr3.3:9239541-9239560 MS.gene046208:CDS 40.0%
TGAAAGCTATGTGCTCTCTA+TGG - chr3.3:9238108-9238127 MS.gene046208:intron 40.0%
TGTCTTGGACATCACATTTG+GGG + chr3.3:9236194-9236213 None:intergenic 40.0%
TTCCTCTATTGCTGCTAACT+TGG - chr3.3:9238605-9238624 MS.gene046208:intron 40.0%
TTGTATGATCTGTCTACCAG+AGG + chr3.3:9236382-9236401 None:intergenic 40.0%
! AAGAGAATGTGGACTGATAG+AGG + chr3.3:9238776-9238795 None:intergenic 40.0%
! AGGGGTATACTTAATCCTCT+TGG + chr3.3:9238865-9238884 None:intergenic 40.0%
! GAGGAATATCGACGACTTTT+CGG + chr3.3:9238950-9238969 None:intergenic 40.0%
! GCAACTTTTGTCCCATTGTA+GGG - chr3.3:9238042-9238061 MS.gene046208:intron 40.0%
! GGTGTTACCTGAATCAAAGA+TGG + chr3.3:9239012-9239031 None:intergenic 40.0%
! GTATATTTTCATGCCGGAGT+AGG + chr3.3:9239041-9239060 None:intergenic 40.0%
! TAACACCCTTTTACCTACTC+CGG - chr3.3:9239025-9239044 MS.gene046208:intron 40.0%
! TCCACCTCAAACTTTGCTTT+TGG - chr3.3:9236437-9236456 MS.gene046208:CDS 40.0%
! TCTTTTACCTTTACTTGCCG+TGG - chr3.3:9237953-9237972 MS.gene046208:intron 40.0%
! TGCAACTTTTGTCCCATTGT+AGG - chr3.3:9238041-9238060 MS.gene046208:intron 40.0%
!! ATGTGGACTGATAGAGGTTT+TGG + chr3.3:9238770-9238789 None:intergenic 40.0%
!! TGTGGACTGATAGAGGTTTT+GGG + chr3.3:9238769-9238788 None:intergenic 40.0%
!! TTCTAGGGTTCTTGAGAAGA+GGG + chr3.3:9238884-9238903 None:intergenic 40.0%
!! TTGTGTCTTTGGCTTGCATT+TGG + chr3.3:9236305-9236324 None:intergenic 40.0%
AACACCGAGTTCACGTTATC+GGG + chr3.3:9239480-9239499 None:intergenic 45.0%
ACACAACCGAATGTGTAGCT+AGG + chr3.3:9238666-9238685 None:intergenic 45.0%
AGCAATAGAGGAACTGCCAT+AGG + chr3.3:9238598-9238617 None:intergenic 45.0%
AGCTCACATGACATACAGCT+TGG - chr3.3:9237924-9237943 MS.gene046208:intron 45.0%
ATCCTTATACATAGCACCGC+AGG - chr3.3:9239423-9239442 MS.gene046208:CDS 45.0%
ATCTGTCTACCAGAGGCAAT+AGG + chr3.3:9236375-9236394 None:intergenic 45.0%
ATGAGCTCACACCACAACTA+GGG + chr3.3:9238560-9238579 None:intergenic 45.0%
ATGGCCTAAATGGGGAACAT+GGG + chr3.3:9236251-9236270 None:intergenic 45.0%
ATTCCTTGCACTGCTTGTGA+TGG - chr3.3:9236489-9236508 MS.gene046208:intron 45.0%
CAACACCAACCCTAGAGTTA+GGG + chr3.3:9239554-9239573 None:intergenic 45.0%
CAACACCGAGTTCACGTTAT+CGG + chr3.3:9239481-9239500 None:intergenic 45.0%
CCAGTTCCTAGCTACACATT+CGG - chr3.3:9238657-9238676 MS.gene046208:intron 45.0%
GCCAAAAGCAAAGTTTGAGG+TGG + chr3.3:9236441-9236460 None:intergenic 45.0%
GGAGAGGAATAGGAACAAGA+GGG + chr3.3:9236154-9236173 None:intergenic 45.0%
TACCTTTACTTGCCGTGGAA+GGG - chr3.3:9237958-9237977 MS.gene046208:intron 45.0%
TAGAGGAACTGCCATAGGTT+AGG + chr3.3:9238593-9238612 None:intergenic 45.0%
TAGGGACATCAATGAGCACA+CGG + chr3.3:9239536-9239555 None:intergenic 45.0%
TCATGCCGGAGTAGGTAAAA+GGG + chr3.3:9239033-9239052 None:intergenic 45.0%
TGCAACTAGCCGAGTAAACA+CGG + chr3.3:9239241-9239260 None:intergenic 45.0%
TTACCTTTACTTGCCGTGGA+AGG - chr3.3:9237957-9237976 MS.gene046208:intron 45.0%
TTAGCCCATGTTCCCCATTT+AGG - chr3.3:9236244-9236263 MS.gene046208:CDS 45.0%
TTCATGCCGGAGTAGGTAAA+AGG + chr3.3:9239034-9239053 None:intergenic 45.0%
! ACTTTTGTCCCATTGTAGGG+TGG - chr3.3:9238045-9238064 MS.gene046208:intron 45.0%
! CACATTTGGGGTTTAGTCCT+TGG + chr3.3:9236182-9236201 None:intergenic 45.0%
! CTTTTGTCCCATTGTAGGGT+GGG - chr3.3:9238046-9238065 MS.gene046208:intron 45.0%
! GCCATCAAAGCCACTTTCAT+GGG - chr3.3:9236266-9236285 MS.gene046208:CDS 45.0%
! GGGAACATGGGCTAAAAACA+TGG + chr3.3:9236239-9236258 None:intergenic 45.0%
! TACCAGGTACCGTGTTTACT+CGG - chr3.3:9239229-9239248 MS.gene046208:CDS 45.0%
! TCTAGGGTTCTTGAGAAGAG+GGG + chr3.3:9238883-9238902 None:intergenic 45.0%
! TTTTGTCCCATTGTAGGGTG+GGG - chr3.3:9238047-9238066 MS.gene046208:intron 45.0%
!! AGTGGCTTTGATGGCCTAAA+TGG + chr3.3:9236261-9236280 None:intergenic 45.0%
!! CTTCTAGGGTTCTTGAGAAG+AGG + chr3.3:9238885-9238904 None:intergenic 45.0%
!! GTGGCTTTGATGGCCTAAAT+GGG + chr3.3:9236260-9236279 None:intergenic 45.0%
!! TCCCATGAAAGTGGCTTTGA+TGG + chr3.3:9236270-9236289 None:intergenic 45.0%
!! TGGCTTTGATGGCCTAAATG+GGG + chr3.3:9236259-9236278 None:intergenic 45.0%
!! TGTCTTTGGCTTGCATTTGG+AGG + chr3.3:9236302-9236321 None:intergenic 45.0%
!! TTCTCTGGGTCTTTGAGACT+TGG - chr3.3:9238825-9238844 MS.gene046208:intron 45.0%
!!! GTGGTTTTGTTGCTGCATGT+TGG + chr3.3:9239514-9239533 None:intergenic 45.0%
AAGCCCAATAGACCTTGTGG+TGG + chr3.3:9238714-9238733 None:intergenic 50.0%
AAGCTCACAGTGACATCCCT+AGG - chr3.3:9239309-9239328 MS.gene046208:CDS 50.0%
AAGTCAACCCCACCCTACAA+TGG + chr3.3:9238057-9238076 None:intergenic 50.0%
ACAAAAGTGACAACGGGCCT+CGG + chr3.3:9238740-9238759 None:intergenic 50.0%
ACCACAAGGTCTATTGGGCT+TGG - chr3.3:9238713-9238732 MS.gene046208:intron 50.0%
AGCATGTGTCAAACCCTCCT+AGG + chr3.3:9239329-9239348 None:intergenic 50.0%
AGCCCAATAGACCTTGTGGT+GGG + chr3.3:9238713-9238732 None:intergenic 50.0%
AGCTATGTGCTCTCTATGGC+AGG - chr3.3:9238112-9238131 MS.gene046208:intron 50.0%
AGGAACTGGATCAGTGGCTA+AGG + chr3.3:9238646-9238665 None:intergenic 50.0%
AGGCAAAGGTTCACGAGACT+TGG - chr3.3:9238132-9238151 MS.gene046208:intron 50.0%
AGGGATGTCACTGTGAGCTT+TGG + chr3.3:9239309-9239328 None:intergenic 50.0%
AGTCAACCCCACCCTACAAT+GGG + chr3.3:9238056-9238075 None:intergenic 50.0%
AGTTGCACCAGTCTATGTCG+CGG - chr3.3:9239254-9239273 MS.gene046208:CDS 50.0%
CAACCATCACAAGCAGTGCA+AGG + chr3.3:9236495-9236514 None:intergenic 50.0%
CAGGTACCTAACCCTAGTTG+TGG - chr3.3:9238546-9238565 MS.gene046208:intron 50.0%
CATGAGCTCACACCACAACT+AGG + chr3.3:9238561-9238580 None:intergenic 50.0%
CCACAAGGTCTATTGGGCTT+GGG - chr3.3:9238714-9238733 MS.gene046208:intron 50.0%
CCGAATGTGTAGCTAGGAAC+TGG + chr3.3:9238660-9238679 None:intergenic 50.0%
CGATATTCCTCCAGCTGCAT+TGG - chr3.3:9238959-9238978 MS.gene046208:intron 50.0%
CTATTCCTCTCCCTAGTCCA+AGG - chr3.3:9236162-9236181 MS.gene046208:CDS 50.0%
CTCACACCACAACTAGGGTT+AGG + chr3.3:9238555-9238574 None:intergenic 50.0%
GATGGCCTAAATGGGGAACA+TGG + chr3.3:9236252-9236271 None:intergenic 50.0%
GCAACACCAACCCTAGAGTT+AGG + chr3.3:9239555-9239574 None:intergenic 50.0%
GCATGTGTCAAACCCTCCTA+GGG + chr3.3:9239328-9239347 None:intergenic 50.0%
GCCGGTACCATCTTTGATTC+AGG - chr3.3:9239002-9239021 MS.gene046208:intron 50.0%
GGATTAAACGCCAATGCAGC+TGG + chr3.3:9238972-9238991 None:intergenic 50.0%
GGGAGAGGAATAGGAACAAG+AGG + chr3.3:9236155-9236174 None:intergenic 50.0%
GGGGTTTAGTCCTTGGACTA+GGG + chr3.3:9236175-9236194 None:intergenic 50.0%
GTAGCTAGGAACTGGATCAG+TGG + chr3.3:9238652-9238671 None:intergenic 50.0%
TACCCTTCCACGGCAAGTAA+AGG + chr3.3:9237963-9237982 None:intergenic 50.0%
TCACAGTGACATCCCTAGGA+GGG - chr3.3:9239313-9239332 MS.gene046208:CDS 50.0%
TGCTGCTCCTGAATGCAAAC+AGG - chr3.3:9236569-9236588 MS.gene046208:intron 50.0%
TGGGGTTTAGTCCTTGGACT+AGG + chr3.3:9236176-9236195 None:intergenic 50.0%
TTAAACGCCAATGCAGCTGG+AGG + chr3.3:9238969-9238988 None:intergenic 50.0%
TTGGCGTTTAATCCGACCAC+TGG - chr3.3:9238978-9238997 MS.gene046208:intron 50.0%
TTTAATCCGACCACTGGAGC+CGG - chr3.3:9238984-9239003 MS.gene046208:intron 50.0%
! CTTGGACTAGGGAGAGGAAT+AGG + chr3.3:9236164-9236183 None:intergenic 50.0%
! GGCCATCAAAGCCACTTTCA+TGG - chr3.3:9236265-9236284 MS.gene046208:CDS 50.0%
! TTAGTCCTTGGACTAGGGAG+AGG + chr3.3:9236170-9236189 None:intergenic 50.0%
!! GATGTCCCTAACTCTAGGGT+TGG - chr3.3:9239546-9239565 MS.gene046208:CDS 50.0%
!! GGAGTGTTGAGCCATTGTCT+TGG + chr3.3:9236209-9236228 None:intergenic 50.0%
!! TGCCTGCGGTGCTATGTATA+AGG + chr3.3:9239428-9239447 None:intergenic 50.0%
ACGAGTTCCGGCGAAGAGTT+GGG - chr3.3:9239283-9239302 MS.gene046208:CDS 55.0%
AGCCGAGTAAACACGGTACC+TGG + chr3.3:9239234-9239253 None:intergenic 55.0%
ATCCTCTTGGGCTGAGCAAC+AGG + chr3.3:9238852-9238871 None:intergenic 55.0%
CCCAAGCCCAATAGACCTTG+TGG + chr3.3:9238717-9238736 None:intergenic 55.0%
CTCACAGTGACATCCCTAGG+AGG - chr3.3:9239312-9239331 MS.gene046208:CDS 55.0%
GCCCAATAGACCTTGTGGTG+GGG + chr3.3:9238712-9238731 None:intergenic 55.0%
GCCCCACCACAAGGTCTATT+GGG - chr3.3:9238708-9238727 MS.gene046208:intron 55.0%
GGACATCAATGAGCACACGG+TGG + chr3.3:9239533-9239552 None:intergenic 55.0%
GTGCTCTCTATGGCAGGCAA+AGG - chr3.3:9238118-9238137 MS.gene046208:intron 55.0%
TCTCTGACCGCGACATAGAC+TGG + chr3.3:9239264-9239283 None:intergenic 55.0%
TGCCCCACCACAAGGTCTAT+TGG - chr3.3:9238707-9238726 MS.gene046208:intron 55.0%
! CAGCACCACGTGTTTTGCCA+TGG - chr3.3:9239446-9239465 MS.gene046208:CDS 55.0%
!! AAAACACGTGGTGCTGCCTG+CGG + chr3.3:9239442-9239461 None:intergenic 55.0%
!! AAAGATGGTACCGGCTCCAG+TGG + chr3.3:9238997-9239016 None:intergenic 55.0%
CGAGTTCACGTTATCGGGCG+CGG + chr3.3:9239475-9239494 None:intergenic 60.0%
CGCGCCCGATAACGTGAACT+CGG - chr3.3:9239473-9239492 MS.gene046208:CDS 60.0%
GACCTGTTGCTCAGCCCAAG+AGG - chr3.3:9238847-9238866 MS.gene046208:intron 60.0%
GACGAGTTCCGGCGAAGAGT+TGG - chr3.3:9239282-9239301 MS.gene046208:CDS 60.0%
GCTTTGGCCCAACTCTTCGC+CGG + chr3.3:9239293-9239312 None:intergenic 60.0%
GGCTGCCATGGCAAAACACG+TGG + chr3.3:9239454-9239473 None:intergenic 60.0%
TCGCGGTCAGAGACGAGTTC+CGG - chr3.3:9239271-9239290 MS.gene046208:CDS 60.0%
!! ATGGTACCGGCTCCAGTGGT+CGG + chr3.3:9238993-9239012 None:intergenic 60.0%
GGCACTTCTGCCCCACCACA+AGG - chr3.3:9238699-9238718 MS.gene046208:intron 65.0%
GGTCTATTGGGCTTGGGCCG+AGG - chr3.3:9238720-9238739 MS.gene046208:intron 65.0%
!! TGGTGGGGCAGAAGTGCCTG+TGG + chr3.3:9238697-9238716 None:intergenic 65.0%
GTTATCGGGCGCGGCTGCCA+TGG + chr3.3:9239466-9239485 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr3.3 gene 9236135 9239593 9236135 ID=MS.gene046208
chr3.3 mRNA 9236135 9239593 9236135 ID=MS.gene046208.t1;Parent=MS.gene046208
chr3.3 exon 9239138 9239593 9239138 ID=MS.gene046208.t1.exon1;Parent=MS.gene046208.t1
chr3.3 CDS 9239138 9239593 9239138 ID=cds.MS.gene046208.t1;Parent=MS.gene046208.t1
chr3.3 exon 9236705 9237179 9236705 ID=MS.gene046208.t1.exon2;Parent=MS.gene046208.t1
chr3.3 CDS 9236705 9237179 9236705 ID=cds.MS.gene046208.t1;Parent=MS.gene046208.t1
chr3.3 exon 9236135 9236493 9236135 ID=MS.gene046208.t1.exon3;Parent=MS.gene046208.t1
chr3.3 CDS 9236135 9236493 9236135 ID=cds.MS.gene046208.t1;Parent=MS.gene046208.t1
Gene Sequence

>MS.gene046208

ATGAAACTCACACTTTCCCTCTTGTTCCTATTCCTCTCCCTAGTCCAAGGACTAAACCCCAAATGTGATGTCCAAGACAATGGCTCAACACTCCAAGTGATCCATGTTTTTAGCCCATGTTCCCCATTTAGGCCATCAAAGCCACTTTCATGGGAAGAAAGTGTCCTCCAAATGCAAGCCAAAGACACAACTAGACTTCAATTCCTTGATAGTTTGGTAGCTAGAAAATCAATTGTACCTATTGCCTCTGGTAGACAGATCATACAAAGTCCAACTTACATTGTTAGGGCTAAAATTGGTACTCCACCTCAAACTTTGCTTTTGGCTATGGATACTAGTAATGATGCTGCTTGGATTCCTTGCACTGCTTGTGATGGTTGTGCTTCAACTTTGTTTGCTCCTGAAAAATCAACTACATTTAAGAATGTTGGTTGTGCTGCTCCTGAATGCAAACAGGTAAAAAATTAATCAACTTCACTTCACTAACAAAGTCACATTTTCTTGTTTTCGTGTTTTTATATTGGCGGTAAATTTGACAAAATTATGATAGTACTATGATTTCATGAAACTCTAAAATGTAGTTTTGTTAAAAAATTACGAAGGTTCATCACGAACTTTGATATGACAACACGATACAAATGATGCAATTGTAATTATGGTTACGATGTTGCCAAGACATCTAAAACTTTTATATTGTTGCTGCAATTGTTTGCAAACCCCAATTTAAAAATCTAAGTTGATTTCAATTTCCAAGCTCTTACATATTTTTTTTTTATTTTGATTCTCTGCCTTTTTCTTCATGAACATTTTTTTCGGTGCAATGAGTTATTTTTACTCCAAGGTATTTATTCTAATAATTTGCTAGTACCTTCATAAAAAATTGTAATATTTTGACTTTTGATTATATGCAAAATCTATTCATGGTGTCATGTTTTGTCAACTAGCTAGTGGATTATGCATTATTAAAATCACAACAATTGTCGAATATTTGTTGAAAAAGGTAATCTGTTTAATATATGATAATACTTTAAAAAAAGATGTGATTCGAATACTTTACAGTTTTTTATTTCGTAATCAGCATCATAATATAAGATACTATATTTTTATTTTGTATTCAGTATCCAAAGATAGATTATATGCAAAATCTATTCATGGTGTCATGTTTTGTCAACTAGCTAGTGGATTATGCATTATTAAAATCACAACAATTGTCGAATATTTGTTGAAAAAGGTAATCTGTTTAATATATGATAATACTTTAAAAAAAGATGTGATTCGAATACTTTACAGTTTTTTATTTCGTAATCAGCATCATAATATAAGATACTATATTTTTATTTTGTATTCAGTATCCAAAGATACTCATTATTTTGTCCACTGTCATATTTCTATTTTAAAATTTAAAAGAATCACGTGACATCAAATGCCACAATGTACAAATCACAACTGTGAATGTTTTTGTACTCTAGTAAAGTACATAAAAATTTGTTTGAACTGGTATACAACAGTGAAAGATTTGTTTTGGGATGCTAATAAAATTATTGAATCGCTACATGAAATTGTAGAAGTGAGCCAATTAAATTCTTCAAGTTAATGTAATTTTTAAATGATCCCTAAGTTTTACTAAAATATTTGGTCACTTTGTTACATGACAATTGTAAAGCTAAATTGATCGAATAAAAAATGAAAAATAAAAACTATTATAAATTGTTGTACCAAAAAAATAGGTTATGTTATAGAGCTCAAATTATCTTAGACAAACTACTTAAATTATTTTTACTTGGACAAAAGCTCACATGACATACAGCTTGGCAAGAGTCTTTTACCTTTACTTGCCGTGGAAGGGTAATTACTAATTTCATAATGAAAGGGACTACAAGGAGAGATTATTGATCACATTGAAACGTGCAACTTTTGTCCCATTGTAGGGTGGGGTTGACTTACATCTAGCCCAATCTATGAATCCAAAATATTGAAAGCTATGTGCTCTCTATGGCAGGCAAAGGTTCACGAGACTTGGAGTCTTCTAAAATCTAAATGCACTTTTTCCAATGAAGTCATCATGGTTAAAAAATTGGATCGAAGCAGTCGTCTTAATCGGTCAATAAAAATTGACCGATTTATCAGTTGGTTTATTCTCGATGGTTTTAAATTCTAGTTGAATTAAATTGAACTGAGTCGACCAAGTAGAATTGAATTCTAGTTGAATTAAATTGAACTAAGTTTAGTTGGTTGAATTGCAGATGATGAAAAATTCAAAAATCGACCAATACATTGGTTGGTTTATTATGGTTTAGTAATGGTTGAATCGATTGAACCAACTGAACCATGATAAGTTATATCAATTCATTCTCCTATCTCATTTTTAAAACATTGGTATTAATGTGAACATTTTATTTTGTTTCATTTTTCAGGTACCTAACCCTAGTTGTGGTGTGAGCTCATGCAATTTCAACCTAACCTATGGCAGTTCCTCTATTGCTGCTAACTTGGTACAAGACACTATTACCTTAGCCACTGATCCAGTTCCTAGCTACACATTCGGTTGTGTTTCAAAAACCACAGGCACTTCTGCCCCACCACAAGGTCTATTGGGCTTGGGCCGAGGCCCGTTGTCACTTTTGTCTCAAACCCAAAACCTCTATCAGTCCACATTCTCTTATTGTTTGCCAAGTTTCAAGTCTCTTAACTTCTCTGGGTCTTTGAGACTTGGACCTGTTGCTCAGCCCAAGAGGATTAAGTATACCCCTCTTCTCAAGAACCCTAGAAGATCATCACTCTATTATGTTAACTTGGAAGCAATTAGGGTTGGCCGAAAAGTCGTCGATATTCCTCCAGCTGCATTGGCGTTTAATCCGACCACTGGAGCCGGTACCATCTTTGATTCAGGTAACACCCTTTTACCTACTCCGGCATGAAAATATACTCTTAGTTGTCTAACACATAGAATATTTGATTCAAATTCTTTTGAAGAAAAGAAAATCAATTGAAAGTTCTAATATATATTTAAATGCATTATTATGTTTTAGAACAACATATAGAAATTTTAGTTACCATAATCATATCATGATTCTTTGTATTTATTGTTAAACATTACCAGGTACCGTGTTTACTCGGCTAGTTGCACCAGTCTATGTCGCGGTCAGAGACGAGTTCCGGCGAAGAGTTGGGCCAAAGCTCACAGTGACATCCCTAGGAGGGTTTGACACATGCTACAATGTCCCAATAGTTGTACCCACAATAACATTCATGTTCTCTGGCATGAACGTGACATTGCCACAAGACAACATCCTTATACATAGCACCGCAGGCAGCACCACGTGTTTTGCCATGGCAGCCGCGCCCGATAACGTGAACTCGGTGTTGAACGTGATAGCCAACATGCAGCAACAAAACCACCGTGTGCTCATTGATGTCCCTAACTCTAGGGTTGGTGTTGCTCGTGAGCTATGTACTTAA
Protein sequence

>MS.gene046208.t1

MKLTLSLLFLFLSLVQGLNPKCDVQDNGSTLQVIHVFSPCSPFRPSKPLSWEESVLQMQAKDTTRLQFLDSLVARKSIVPIASGRQIIQSPTYIVRAKIGTPPQTLLLAMDTSNDAAWIPCTACDGCASTLFAPEKSTTFKNVGCAAPECKQVPNPSCGVSSCNFNLTYGSSSIAANLVQDTITLATDPVPSYTFGCVSKTTGTSAPPQGLLGLGRGPLSLLSQTQNLYQSTFSYCLPSFKSLNFSGSLRLGPVAQPKRIKYTPLLKNPRRSSLYYVNLEAIRVGRKVVDIPPAALAFNPTTGAGTIFDSGTVFTRLVAPVYVAVRDEFRRRVGPKLTVTSLGGFDTCYNVPIVVPTITFMFSGMNVTLPQDNILIHSTAGSTTCFAMAAAPDNVNSVLNVIANMQQQNHRVLIDVPNSRVGVARELCT