AlfalfaGEDB | MS.gene047168

M. sativa cultivar XinJiangDaYe / MS.gene047168

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28 PF19160.3

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene047168.t1	AES63273.2	96.9	641	12	2	1	639	10	644	0.00E+00	1221.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene047168.t1	O04086	63.2	638	213	9	4	639	8	625	2.4e-225	783.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene047168.t1	A0A072VE54	96.9	641	12	2	1	639	10	644	0.0e+00	1221.1

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene035276	MS.gene047168	PPI
MS.gene036544	MS.gene047168	PPI
MS.gene041504	MS.gene047168	PPI
MS.gene060354	MS.gene047168	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene047168.t1	MTR_2g006910	96.880	641	12	2	1	639	10	644	0.0	1282
MS.gene047168.t1	MTR_2g006910	96.880	641	12	2	1	639	10	644	0.0	1281
MS.gene047168.t1	MTR_8g088780	63.107	618	217	7	3	615	10	621	0.0	780
MS.gene047168.t1	MTR_1g029610	54.781	617	246	12	3	618	6	590	0.0	642
MS.gene047168.t1	MTR_8g088760	54.173	611	225	10	18	615	20	588	0.0	626
MS.gene047168.t1	MTR_7g094100	37.943	593	325	17	20	606	21	576	9.37e-114	355
MS.gene047168.t1	MTR_7g094100	37.943	593	325	17	20	606	21	576	1.28e-113	355
MS.gene047168.t1	MTR_1g089600	51.703	323	138	6	285	606	282	587	2.23e-103	328
MS.gene047168.t1	MTR_4g076660	90.226	133	12	1	88	220	1	132	2.22e-76	241
MS.gene047168.t1	MTR_2g073540	40.710	366	175	9	238	599	379	706	2.17e-75	257

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene047168.t1	AT1G11050	63.550	631	194	9	18	639	22	625	0.0	783
MS.gene047168.t1	AT2G48010	38.384	594	316	16	21	606	23	574	5.38e-118	365
MS.gene047168.t1	AT1G29720	42.154	325	166	4	284	608	658	960	3.02e-76	263
MS.gene047168.t1	AT1G60800	41.026	351	176	8	245	593	189	510	1.36e-75	252
MS.gene047168.t1	AT1G60800	41.026	351	176	8	245	593	256	577	1.18e-74	251
MS.gene047168.t1	AT1G70530	38.228	395	206	10	217	610	252	609	5.36e-74	250
MS.gene047168.t1	AT1G56145	37.647	425	213	12	196	613	496	875	9.58e-74	254
MS.gene047168.t1	AT1G29730	43.789	322	159	5	282	603	625	924	1.74e-73	255
MS.gene047168.t1	AT5G45780	38.579	394	206	9	206	595	173	534	1.98e-73	247
MS.gene047168.t1	AT1G56145	37.647	425	213	12	196	613	599	978	2.86e-73	254

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Find 137 sgRNAs with CRISPR-Local

Find 159 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACCTTTCCATTATGCTCTT+AGG	0.269768	2.2:+73016083	None:intergenic
AACTCACGGATACCTAGCGC+CGG	0.639614	2.2:-73016330	MS.gene047168:CDS
AAGAATTTCATAGGGAGAGG+TGG	0.545332	2.2:-73016851	MS.gene047168:CDS
AAGAGTGATGTATACAGCTT+TGG	0.525424	2.2:-73016278	MS.gene047168:CDS
AAGAGTTCCAATGAATTCTT+AGG	0.278309	2.2:+73017665	None:intergenic
AAGCAAACAAATCATTGTCT+TGG	0.480711	2.2:-73016553	MS.gene047168:CDS
AAGGTTCTAGGCGTAGGTTG+AGG	0.630785	2.2:-73016940	MS.gene047168:CDS
AAGTTCCTCAAATTCCAGAT+AGG	0.461563	2.2:-73015971	MS.gene047168:CDS
AATGAGAATTATGGTGATAA+AGG	0.351808	2.2:-73016656	MS.gene047168:CDS
AATTCTATGTTCTCATGTAA+TGG	0.453868	2.2:-73016048	MS.gene047168:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGAGTTCCAATGAATTCTT+AGG	+	chr2.2:73015949-73015968	None:intergenic	30.0%
AAGCAAACAAATCATTGTCT+TGG	-	chr2.2:73017058-73017077	MS.gene047168:CDS	30.0%
ACTACTTGATGAAGATATGA+GGG	-	chr2.2:73017185-73017204	MS.gene047168:CDS	30.0%
ACTATGTCCTAAGAATTCAT+TGG	-	chr2.2:73015939-73015958	MS.gene047168:CDS	30.0%
ATATCCCTATGATAAATTGC+AGG	+	chr2.2:73017150-73017169	None:intergenic	30.0%
CATGATTGGAATAAGAAAGT+GGG	-	chr2.2:73016238-73016257	MS.gene047168:CDS	30.0%
CCATCGTTATTATAAAATGC+AGG	+	chr2.2:73017684-73017703	None:intergenic	30.0%
CGTTATTATAAAATGCAGGA+TGG	+	chr2.2:73017680-73017699	None:intergenic	30.0%
GAGAGATAACAAATTGAAGA+GGG	+	chr2.2:73016189-73016208	None:intergenic	30.0%
GTATTGAAACTGTTCATGAT+TGG	-	chr2.2:73016224-73016243	MS.gene047168:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.2	gene	73015857	73017776	73015857	ID=MS.gene047168
chr2.2	mRNA	73015857	73017776	73015857	ID=MS.gene047168.t1;Parent=MS.gene047168
chr2.2	exon	73015857	73017776	73015857	ID=MS.gene047168.t1.exon1;Parent=MS.gene047168.t1
chr2.2	CDS	73015857	73017776	73015857	ID=cds.MS.gene047168.t1;Parent=MS.gene047168.t1

Gene Sequence

>MS.gene047168

ATGAACATGTTGATGATGAGTTTAAGGACTATTTCAGCAGCTCCTACTCCTTCTCCTTCATCTACATGTCCTATGGACCTCAACTATGTCCTAAGAATTCATTGGAACTCTTCAGCTTGTCAAAATTTCAAGTCTTTATCATCCAAAGAAACTAGCACATGTTGTGCATCAGTTTTGTCTCTTTTTGGAATAGGATTTGCACAACATCTAAAAGAAACTTCACAGTTCAATCTTCAAGATCTTCAAACTTCAAAGTCATGCATGCAAGATTTTCAATCAAAGCTTAACTCTTTATCACTTTACAACAACTTGGTCAACTCTTGTTTTGACCCTCTTCAATTTGTTATCTCTCGTAACATATGTGCAGGTATTGAAACTGTTCATGATTGGAATAAGAAAGTGGGTCAGAATTCATCTTTGAATACTGCTTGCAAACCAGATCTCACTGATCTTTCTCTGTGTGATGTCTGTGTTTCTGCTGGATTACAGGTTAAGCAGAAGCTTGTTTCAATTAGTGGTAATTCTTCTCAGTCATTGAGTTGTTTTTACTTTGCAATTCTTTATGCTGCTGGAATTGTGAATGAGTTTGGACCTGAAAGTAATGGTGCTGTTACTTGTGCTTTTAGTTTACCTGTTTATTCACAAGTTGGTTCTGGTTCAAAGGGTCATCAGGGTCTTGTGTTTGGGTTAACAGGAGCTGGTGTTGCTTTGTTTGTTATGTGTTCTTTGTTGGGTTTATACGTTTGGTGTGATAGGAAACGTATGAGGAAGAGAAAGCTTGAAACTTTTCAATTTGATTTTGATCCTGAGGAACAAGGTTCTAGGCGTAGGTTGAGGCCTAATACAGGGTCAATTTGGTACAAAATTCAGGAACTTGAGAAAGCTACTGATAATTTTTCATCCAAGAATTTCATAGGGAGAGGTGGGTTTGGTTTGGTTTTCAAAGGAACTTTGGCTGATGGATCTGTTGTTGCTGTTAAGAGGGTTTTAGAATCTGATTTTCAAGGGGATGTTGAGTTTTGTAATGAGGTTGAGATAATTAGTAATTTGAAGCACAGGAATCTGTTACCTCTTAGAGGTTGTTGTGTGGTTGATGAAAATGAGAATTATGGTGATAAAGGAAGTCAAAGATACCTTGTTTATGATTACATGCCAAATGGAAACTTGGAAGATCATCTTTTTGTATCAAAGGATCCTAAAAAAGCAAACAAATCATTGTCTTGGCCTCTTCGAAAAAACATAATCTTGGATGTCGGAAAAGGGTTGGCTTATTTACACTATGGAGTTAAGCCTGCAATTTATCATAGGGATATCAAAGCTACCAATATACTACTTGATGAAGATATGAGGGCAAGAGTTGCTGATTTTGGTCTTGCTAAACAAAGTAGGGAGGGTCAGTCTCATCTCACTACTAGAGTGGCCGGAACTCACGGATACCTAGCGCCGGAATATGCGCTCTATGGTCAGCTGACTGAGAAGAGTGATGTATACAGCTTTGGTGTGGTTGTTTTGGAGATAATGTGTGGTAGGAAGGCTCTTGATTTGTCCTCATCGGGCTCTCCGCGAGCGTTCTTGATCACGGATTGGGCTTGGTCGTTGGTGAAATCGGGGAAAATAAACGAGGCTTTGGATGCTTCTCTTCTGAAAGATGATAACACTGCTAGTGCAAATCCTAAGAGCATAATGGAAAGGTTTTTGCTTGTTGGAATTCTATGTTCTCATGTAATGGTTGCTTTGAGGCCAACAATTTCTGATGCTTTGAAGATGTTGGAAGGGGATATTGAAGTTCCTCAAATTCCAGATAGGCCTATGCCTCTTGGCCATCCTGCATTTTATAATAACGATGGCAACGGCAACACTTTTAGCATATCTCCGGCATTAAGCGGCCTCAAATTACCCGCTGGCGACATGCTCAGGTAA

Protein sequence

>MS.gene047168.t1

MNMLMMSLRTISAAPTPSPSSTCPMDLNYVLRIHWNSSACQNFKSLSSKETSTCCASVLSLFGIGFAQHLKETSQFNLQDLQTSKSCMQDFQSKLNSLSLYNNLVNSCFDPLQFVISRNICAGIETVHDWNKKVGQNSSLNTACKPDLTDLSLCDVCVSAGLQVKQKLVSISGNSSQSLSCFYFAILYAAGIVNEFGPESNGAVTCAFSLPVYSQVGSGSKGHQGLVFGLTGAGVALFVMCSLLGLYVWCDRKRMRKRKLETFQFDFDPEEQGSRRRLRPNTGSIWYKIQELEKATDNFSSKNFIGRGGFGLVFKGTLADGSVVAVKRVLESDFQGDVEFCNEVEIISNLKHRNLLPLRGCCVVDENENYGDKGSQRYLVYDYMPNGNLEDHLFVSKDPKKANKSLSWPLRKNIILDVGKGLAYLHYGVKPAIYHRDIKATNILLDEDMRARVADFGLAKQSREGQSHLTTRVAGTHGYLAPEYALYGQLTEKSDVYSFGVVVLEIMCGRKALDLSSSGSPRAFLITDWAWSLVKSGKINEALDASLLKDDNTASANPKSIMERFLLVGILCSHVMVALRPTISDALKMLEGDIEVPQIPDRPMPLGHPAFYNNDGNGNTFSISPALSGLKLPAGDMLR