Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048260.t1 | XP_003594302.1 | 86.8 | 341 | 40 | 1 | 1 | 336 | 1 | 341 | 9.10E-111 | 410.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048260.t1 | Q8TBZ6 | 45.5 | 176 | 92 | 3 | 111 | 284 | 103 | 276 | 2.6e-37 | 157.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048260.t1 | G7IQ11 | 86.8 | 341 | 40 | 1 | 1 | 336 | 1 | 341 | 6.6e-111 | 410.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene048260 | MS.gene40912 | PPI |
| MS.gene048260 | MS.gene06380 | PPI |
| MS.gene048260 | MS.gene013296 | PPI |
| MS.gene049266 | MS.gene048260 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048260.t1 | MTR_2g027010 | 92.962 | 341 | 19 | 1 | 1 | 336 | 1 | 341 | 0.0 | 560 |
| MS.gene048260.t1 | MTR_1g032210 | 79.688 | 64 | 8 | 1 | 5 | 63 | 48 | 111 | 5.18e-13 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048260.t1 | AT5G47680 | 66.460 | 322 | 105 | 2 | 7 | 325 | 16 | 337 | 8.06e-133 | 382 |
Find 76 sgRNAs with CRISPR-Local
Find 193 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGAACAAGATATATATAAT+TGG | 0.269988 | 2.3:+62378786 | MS.gene048260:CDS |
| CCTGCACATCTTTGGCTAAC+TGG | 0.275764 | 2.3:+62378603 | MS.gene048260:CDS |
| TAGCTTCTTCTCCGCGTTCT+TGG | 0.297523 | 2.3:-62377014 | None:intergenic |
| CTTGTGAAAGCGAAAGAATT+AGG | 0.307149 | 2.3:+62377253 | MS.gene048260:CDS |
| TGGTGGTGGAACAGTGGATT+CGG | 0.312822 | 2.3:-62376972 | None:intergenic |
| CAAACAGCTAAACTTCCTAT+TGG | 0.340136 | 2.3:+62378873 | MS.gene048260:CDS |
| TTGAAGCGAGAATGAGTTTA+CGG | 0.348669 | 2.3:+62377179 | MS.gene048260:CDS |
| TCATCAACAAGTTTGTTAGA+AGG | 0.359781 | 2.3:-62379940 | None:intergenic |
| GTGAAACCCCTGCACATCTT+TGG | 0.363917 | 2.3:+62378595 | MS.gene048260:CDS |
| GTGGATTAGTTGATAGGAAT+AGG | 0.366874 | 2.3:+62378808 | MS.gene048260:CDS |
| GGCAGATCGTAAGGATGATT+TGG | 0.373805 | 2.3:+62378719 | MS.gene048260:CDS |
| CTTGAAGATGTCTAGTTCTC+AGG | 0.377122 | 2.3:+62378902 | MS.gene048260:CDS |
| TAATTGGTGGATTAGTTGAT+AGG | 0.387931 | 2.3:+62378802 | MS.gene048260:CDS |
| GAGTTTACGGAAGGAGAGAA+TGG | 0.415787 | 2.3:+62377192 | MS.gene048260:CDS |
| AGAAGGAAACCGAACGGAAA+AGG | 0.417690 | 2.3:+62377101 | MS.gene048260:CDS |
| GAATGGGAAGAAAGTATTGC+GGG | 0.432371 | 2.3:+62377127 | MS.gene048260:CDS |
| AGAAATACTACTCAAGTTCC+TGG | 0.437281 | 2.3:+62379738 | MS.gene048260:CDS |
| TCTGAAGTGGGTTGTGGTGG+TGG | 0.439329 | 2.3:-62376986 | None:intergenic |
| AGAGAAGAAAGCGGCGGCGA+AGG | 0.440968 | 2.3:+62377069 | MS.gene048260:CDS |
| GGTGGTGGAACAGTGGATTC+GGG | 0.452897 | 2.3:-62376971 | None:intergenic |
| CATCAACAAGTTTGTTAGAA+GGG | 0.461175 | 2.3:-62379939 | None:intergenic |
| TTGTGAAAGCGAAAGAATTA+GGG | 0.462027 | 2.3:+62377254 | MS.gene048260:CDS |
| AACAAGATATATATAATTGG+TGG | 0.462299 | 2.3:+62378789 | MS.gene048260:CDS |
| GAACAGTGGATTCGGGTTCG+TGG | 0.463438 | 2.3:-62376964 | None:intergenic |
| CCAGTTAGCCAAAGATGTGC+AGG | 0.463576 | 2.3:-62378603 | None:intergenic |
| TAAGTCTTATATCGAAGTAT+TGG | 0.470291 | 2.3:+62378698 | MS.gene048260:CDS |
| GTGGATTCGGGTTCGTGGGT+TGG | 0.478057 | 2.3:-62376959 | None:intergenic |
| GAGAGTTCTGAAGTGGGTTG+TGG | 0.480250 | 2.3:-62376992 | None:intergenic |
| CCGAACGGAAAAGGAAGGAA+TGG | 0.480768 | 2.3:+62377110 | MS.gene048260:CDS |
| AGTTCTGAAGTGGGTTGTGG+TGG | 0.482591 | 2.3:-62376989 | None:intergenic |
| AGTTGATAGGAATAGGTTCA+AGG | 0.488910 | 2.3:+62378815 | MS.gene048260:CDS |
| AGAAAGTATTGCGGGGATAA+CGG | 0.490287 | 2.3:+62377135 | MS.gene048260:CDS |
| CGAAGTATTGGCAGATCGTA+AGG | 0.491306 | 2.3:+62378710 | MS.gene048260:CDS |
| GGAAGGAGAGAATGGAGAAA+AGG | 0.501934 | 2.3:+62377200 | MS.gene048260:CDS |
| TAGGTTCAAGGGGATAACTA+TGG | 0.506219 | 2.3:+62378827 | MS.gene048260:CDS |
| AATTCGTAGTCTCGTTCAGC+AGG | 0.506651 | 2.3:+62377327 | MS.gene048260:CDS |
| AACAGTGGATTCGGGTTCGT+GGG | 0.513268 | 2.3:-62376963 | None:intergenic |
| AGATACCGGGATTTGATAAG+TGG | 0.516271 | 2.3:+62378658 | MS.gene048260:CDS |
| AGCTAGCGAAACAACAGAGA+TGG | 0.519168 | 2.3:+62377032 | MS.gene048260:CDS |
| ATGTATTGCTATGCGGTGAA+TGG | 0.524164 | 2.3:+62378567 | MS.gene048260:CDS |
| TTCTTGGAGAGTTCTGAAGT+GGG | 0.527632 | 2.3:-62376998 | None:intergenic |
| GTTCTTGGAGAGTTCTGAAG+TGG | 0.533454 | 2.3:-62376999 | None:intergenic |
| AGTTCCTGGAGACAAGGGAT+TGG | 0.534892 | 2.3:+62379752 | MS.gene048260:CDS |
| CGAACGGAAAAGGAAGGAAT+GGG | 0.535470 | 2.3:+62377111 | MS.gene048260:CDS |
| AACTGGCTGCGAAGGAGAGA+CGG | 0.536492 | 2.3:+62378620 | MS.gene048260:CDS |
| ATCTTCAAGAAATTGCCAAT+AGG | 0.540462 | 2.3:-62378888 | None:intergenic |
| TACTCAAGTTCCTGGAGACA+AGG | 0.542557 | 2.3:+62379746 | MS.gene048260:CDS |
| GCTAGCGAAACAACAGAGAT+GGG | 0.543318 | 2.3:+62377033 | MS.gene048260:CDS |
| CTTTGGCTAACTGGCTGCGA+AGG | 0.546041 | 2.3:+62378612 | MS.gene048260:CDS |
| GGGTTGTGGTGGTGGAACAG+TGG | 0.548162 | 2.3:-62376978 | None:intergenic |
| GTTGATAGGAATAGGTTCAA+GGG | 0.551035 | 2.3:+62378816 | MS.gene048260:CDS |
| AGATCACAAGCTGATTCAGA+AGG | 0.558701 | 2.3:+62379811 | MS.gene048260:CDS |
| AACGGAGGAAGAGAGAGTGA+AGG | 0.562848 | 2.3:+62377153 | MS.gene048260:CDS |
| ATGATCCACTTATCAAATCC+CGG | 0.563131 | 2.3:-62378663 | None:intergenic |
| GGCGAAGGAGAAGAAGAAGA+AGG | 0.568318 | 2.3:+62377084 | MS.gene048260:CDS |
| GTATCTAACGGCTGATTCAG+AGG | 0.575403 | 2.3:+62378743 | MS.gene048260:CDS |
| GGATGATTTGGTGTATCTAA+CGG | 0.578478 | 2.3:+62378731 | MS.gene048260:CDS |
| TTGATAGGAATAGGTTCAAG+GGG | 0.582030 | 2.3:+62378817 | MS.gene048260:CDS |
| TGCAGATAATACTGTAGATG+AGG | 0.589269 | 2.3:+62379837 | MS.gene048260:CDS |
| GGAAACCGAACGGAAAAGGA+AGG | 0.590394 | 2.3:+62377105 | MS.gene048260:CDS |
| AGCGAGAATGAGTTTACGGA+AGG | 0.602257 | 2.3:+62377183 | MS.gene048260:CDS |
| AGAAGAAGAAGGAAACCGAA+CGG | 0.602752 | 2.3:+62377095 | MS.gene048260:CDS |
| CAGTTAGCCAAAGATGTGCA+GGG | 0.609008 | 2.3:-62378602 | None:intergenic |
| TGATAAGTGGATCATCGAGA+AGG | 0.617301 | 2.3:+62378671 | MS.gene048260:CDS |
| ATGGAGAAAGCACAAGAGCA+AGG | 0.622205 | 2.3:+62378846 | MS.gene048260:CDS |
| TCTTTGCTGTTATCCCTCAG+AGG | 0.622550 | 2.3:+62379785 | MS.gene048260:CDS |
| ACGAGACTACGAATTTCTTG+AGG | 0.622869 | 2.3:-62377319 | None:intergenic |
| ACTCAAGTTCCTGGAGACAA+GGG | 0.624343 | 2.3:+62379747 | MS.gene048260:CDS |
| AAAGAAAGCAGAGAAGAAAG+CGG | 0.626250 | 2.3:+62377060 | MS.gene048260:CDS |
| GAAAGCAGAGAAGAAAGCGG+CGG | 0.640363 | 2.3:+62377063 | MS.gene048260:CDS |
| GGAATGGGAAGAAAGTATTG+CGG | 0.652862 | 2.3:+62377126 | MS.gene048260:CDS |
| AGTTAGCCAAAGATGTGCAG+GGG | 0.659607 | 2.3:-62378601 | None:intergenic |
| TTCAGAACTCTCCAAGAACG+CGG | 0.669890 | 2.3:+62377003 | MS.gene048260:CDS |
| AATGGGAAGAAAGTATTGCG+GGG | 0.675773 | 2.3:+62377128 | MS.gene048260:CDS |
| AAGTATTGCGGGGATAACGG+AGG | 0.722714 | 2.3:+62377138 | MS.gene048260:CDS |
| GTAGATAATGTATTGCTATG+CGG | 0.772427 | 2.3:+62378560 | MS.gene048260:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAATGAAATTCAAAATT+AGG | - | chr2.3:62377974-62377993 | None:intergenic | 10.0% |
| !! | AAAAATGAAATTCAAAATTA+GGG | - | chr2.3:62377973-62377992 | None:intergenic | 10.0% |
| !! | AGTGATTATATTTATATTAA+AGG | + | chr2.3:62377461-62377480 | MS.gene048260:intron | 10.0% |
| !! | ATTATATTTATATTAAAGGT+CGG | + | chr2.3:62377465-62377484 | MS.gene048260:intron | 10.0% |
| !!! | CATATATTTTTGTTATAAAT+TGG | + | chr2.3:62378263-62378282 | MS.gene048260:intron | 10.0% |
| !! | TGATCTATGAAATTATAATT+TGG | + | chr2.3:62379337-62379356 | MS.gene048260:intron | 15.0% |
| !! | TTGAACAAGATATATATAAT+TGG | + | chr2.3:62378786-62378805 | MS.gene048260:CDS | 15.0% |
| !!! | ATTTTTGTTATAAATTGGTA+GGG | + | chr2.3:62378268-62378287 | MS.gene048260:intron | 15.0% |
| !!! | CTTATTTTCATTAGTTTATA+TGG | + | chr2.3:62377597-62377616 | MS.gene048260:intron | 15.0% |
| !!! | TATTTTTGTTATAAATTGGT+AGG | + | chr2.3:62378267-62378286 | MS.gene048260:intron | 15.0% |
| !!! | TTTTTTGTGAATTTTTTGAT+GGG | + | chr2.3:62377368-62377387 | MS.gene048260:intron | 15.0% |
| !!! | TTTTTTTGTGAATTTTTTGA+TGG | + | chr2.3:62377367-62377386 | MS.gene048260:intron | 15.0% |
| !! | AACAAGATATATATAATTGG+TGG | + | chr2.3:62378789-62378808 | MS.gene048260:CDS | 20.0% |
| !! | GTACTATGTATAGATTATAT+TGG | + | chr2.3:62379033-62379052 | MS.gene048260:intron | 20.0% |
| !! | TAATCAATTGAAAAAGATAC+CGG | + | chr2.3:62378644-62378663 | MS.gene048260:CDS | 20.0% |
| !!! | AAGTTTGTATTTTGTATCAT+TGG | + | chr2.3:62378999-62379018 | MS.gene048260:intron | 20.0% |
| !!! | ACTTGATAACACTTAAAAAT+GGG | + | chr2.3:62379642-62379661 | MS.gene048260:intron | 20.0% |
| !!! | CTATATTTTTGAATGTGTAT+TGG | + | chr2.3:62378393-62378412 | MS.gene048260:intron | 20.0% |
| !!! | TAATATTTCTTGTTGTGTAT+TGG | + | chr2.3:62378510-62378529 | MS.gene048260:intron | 20.0% |
| !!! | TACTTGATAACACTTAAAAA+TGG | + | chr2.3:62379641-62379660 | MS.gene048260:intron | 20.0% |
| !!! | TCATTTTTTAACTTTGTGTA+TGG | + | chr2.3:62377985-62378004 | MS.gene048260:intron | 20.0% |
| !!! | TTAGATTGTTTATGGTTTTT+GGG | + | chr2.3:62377395-62377414 | MS.gene048260:intron | 20.0% |
| !!! | TTTAGATTGTTTATGGTTTT+TGG | + | chr2.3:62377394-62377413 | MS.gene048260:intron | 20.0% |
| ! | AAGTAAAAAGAAATGTGTTG+AGG | + | chr2.3:62379912-62379931 | MS.gene048260:CDS | 25.0% |
| ! | AATCAATTGAAAAAGATACC+GGG | + | chr2.3:62378645-62378664 | MS.gene048260:CDS | 25.0% |
| ! | ATTTATATTAAAGGTCGGTT+TGG | + | chr2.3:62377470-62377489 | MS.gene048260:intron | 25.0% |
| ! | CGATATATGTTTAGATAAGA+CGG | + | chr2.3:62378433-62378452 | MS.gene048260:intron | 25.0% |
| ! | GAACTCAAAAATTTCTATAG+CGG | - | chr2.3:62378046-62378065 | None:intergenic | 25.0% |
| ! | TATATGAGAAACATCCAAAT+TGG | - | chr2.3:62378249-62378268 | None:intergenic | 25.0% |
| !! | ATTGCTGATCTTCAATTTTA+TGG | + | chr2.3:62379559-62379578 | MS.gene048260:intron | 25.0% |
| !! | TAAGTCTTATATCGAAGTAT+TGG | + | chr2.3:62378698-62378717 | MS.gene048260:CDS | 25.0% |
| !! | TGTATTGGTAAATGATAGAA+TGG | + | chr2.3:62378408-62378427 | MS.gene048260:intron | 25.0% |
| !! | TTTTACAATCTCAACCAATT+TGG | + | chr2.3:62378232-62378251 | MS.gene048260:intron | 25.0% |
| !!! | AAAATTTCTATAGCGGATTA+CGG | - | chr2.3:62378039-62378058 | None:intergenic | 25.0% |
| !!! | TCTATCACATTAGTCTTTTT+TGG | + | chr2.3:62379360-62379379 | MS.gene048260:intron | 25.0% |
| !!! | TGGGTTTTTTAGATTGTTTA+TGG | + | chr2.3:62377387-62377406 | MS.gene048260:intron | 25.0% |
| AAACATTTGTGAGACTGTTT+AGG | + | chr2.3:62377523-62377542 | MS.gene048260:intron | 30.0% | |
| AAATGTCTTAGACACACAAA+TGG | - | chr2.3:62379673-62379692 | None:intergenic | 30.0% | |
| ACCATTTAGCTGAAATTACT+GGG | + | chr2.3:62379274-62379293 | MS.gene048260:intron | 30.0% | |
| AGAAAAATGAGAAGAAAGAG+AGG | + | chr2.3:62377230-62377249 | MS.gene048260:CDS | 30.0% | |
| AGAGAATTATCAAAAGAGAG+AGG | + | chr2.3:62379145-62379164 | MS.gene048260:intron | 30.0% | |
| ATCTTCAAGAAATTGCCAAT+AGG | - | chr2.3:62378891-62378910 | None:intergenic | 30.0% | |
| ATTCAGTCCTACATCTATAA+AGG | - | chr2.3:62379497-62379516 | None:intergenic | 30.0% | |
| GAGAATTATCAAAAGAGAGA+GGG | + | chr2.3:62379146-62379165 | MS.gene048260:intron | 30.0% | |
| GTAGATAATGTATTGCTATG+CGG | + | chr2.3:62378560-62378579 | MS.gene048260:intron | 30.0% | |
| TAAATCACCAACTTAGTCTA+GGG | - | chr2.3:62379623-62379642 | None:intergenic | 30.0% | |
| TATTTCTCATTTGAGCTTTC+AGG | + | chr2.3:62379693-62379712 | MS.gene048260:intron | 30.0% | |
| TGAAGAAAAAGATGATCTAC+TGG | + | chr2.3:62379888-62379907 | MS.gene048260:CDS | 30.0% | |
| TGTAAATTAAGCTGTGAACA+AGG | + | chr2.3:62377704-62377723 | MS.gene048260:intron | 30.0% | |
| TTATAGATGTAGGACTGAAT+TGG | + | chr2.3:62379497-62379516 | MS.gene048260:intron | 30.0% | |
| TTCAGTCCTACATCTATAAA+GGG | - | chr2.3:62379496-62379515 | None:intergenic | 30.0% | |
| TTGTCAATAGCACACTATAA+CGG | + | chr2.3:62377772-62377791 | MS.gene048260:intron | 30.0% | |
| TTGTGAAAGCGAAAGAATTA+GGG | + | chr2.3:62377254-62377273 | MS.gene048260:CDS | 30.0% | |
| ! | ATGTATTTGATAACAGAGTC+AGG | + | chr2.3:62378126-62378145 | MS.gene048260:intron | 30.0% |
| ! | TACAAACTTTTAGCAGTCAA+AGG | - | chr2.3:62378988-62379007 | None:intergenic | 30.0% |
| ! | TGTATTGGTAAATGATGGAA+TGG | + | chr2.3:62378525-62378544 | MS.gene048260:intron | 30.0% |
| ! | TGTTGTGTATTGGTAAATGA+TGG | + | chr2.3:62378520-62378539 | MS.gene048260:intron | 30.0% |
| !! | AAATTTCTATAGCGGATTAC+GGG | - | chr2.3:62378038-62378057 | None:intergenic | 30.0% |
| !! | CATCAACAAGTTTGTTAGAA+GGG | - | chr2.3:62379942-62379961 | None:intergenic | 30.0% |
| !! | TAATTGGTGGATTAGTTGAT+AGG | + | chr2.3:62378802-62378821 | MS.gene048260:CDS | 30.0% |
| !! | TCATCAACAAGTTTGTTAGA+AGG | - | chr2.3:62379943-62379962 | None:intergenic | 30.0% |
| AAAGAAAGCAGAGAAGAAAG+CGG | + | chr2.3:62377060-62377079 | MS.gene048260:CDS | 35.0% | |
| AATGTAAAAGAACCTACCGA+TGG | - | chr2.3:62379218-62379237 | None:intergenic | 35.0% | |
| AGAAATACTACTCAAGTTCC+TGG | + | chr2.3:62379738-62379757 | MS.gene048260:CDS | 35.0% | |
| AGAGACGATTGAGAGAAAAT+AGG | + | chr2.3:62379113-62379132 | MS.gene048260:intron | 35.0% | |
| ATGATCCACTTATCAAATCC+CGG | - | chr2.3:62378666-62378685 | None:intergenic | 35.0% | |
| ATGTGTCAAAGTGACTAATG+TGG | + | chr2.3:62379405-62379424 | MS.gene048260:intron | 35.0% | |
| CAAAAGAGAGAGGGAAAAAA+TGG | + | chr2.3:62379155-62379174 | MS.gene048260:intron | 35.0% | |
| CAAACAGCTAAACTTCCTAT+TGG | + | chr2.3:62378873-62378892 | MS.gene048260:CDS | 35.0% | |
| CACCATTTAGCTGAAATTAC+TGG | + | chr2.3:62379273-62379292 | MS.gene048260:intron | 35.0% | |
| CCATTTAGCTGAAATTACTG+GGG | + | chr2.3:62379275-62379294 | MS.gene048260:intron | 35.0% | |
| CTTGTGAAAGCGAAAGAATT+AGG | + | chr2.3:62377253-62377272 | MS.gene048260:CDS | 35.0% | |
| GAGACGATTGAGAGAAAATA+GGG | + | chr2.3:62379114-62379133 | MS.gene048260:intron | 35.0% | |
| GTAAATCACCAACTTAGTCT+AGG | - | chr2.3:62379624-62379643 | None:intergenic | 35.0% | |
| TAAATTGCCCTAGACTAAGT+TGG | + | chr2.3:62379613-62379632 | MS.gene048260:intron | 35.0% | |
| TGCAGATAATACTGTAGATG+AGG | + | chr2.3:62379837-62379856 | MS.gene048260:CDS | 35.0% | |
| TTGAAGATCAGCAATCACAT+TGG | - | chr2.3:62379554-62379573 | None:intergenic | 35.0% | |
| TTGAAGCGAGAATGAGTTTA+CGG | + | chr2.3:62377179-62377198 | MS.gene048260:CDS | 35.0% | |
| TTGATAGGAATAGGTTCAAG+GGG | + | chr2.3:62378817-62378836 | MS.gene048260:CDS | 35.0% | |
| ! | GTTGATAGGAATAGGTTCAA+GGG | + | chr2.3:62378816-62378835 | MS.gene048260:CDS | 35.0% |
| ! | TTTTCAGACGATGTCATCAA+CGG | - | chr2.3:62379528-62379547 | None:intergenic | 35.0% |
| !! | AGTTGATAGGAATAGGTTCA+AGG | + | chr2.3:62378815-62378834 | MS.gene048260:CDS | 35.0% |
| !! | GGATGATTTGGTGTATCTAA+CGG | + | chr2.3:62378731-62378750 | MS.gene048260:CDS | 35.0% |
| !! | GTGGATTAGTTGATAGGAAT+AGG | + | chr2.3:62378808-62378827 | MS.gene048260:CDS | 35.0% |
| !!! | AACCCTCTTGTTTTTGCTTT+GGG | + | chr2.3:62378947-62378966 | MS.gene048260:intron | 35.0% |
| !!! | TAACCCTCTTGTTTTTGCTT+TGG | + | chr2.3:62378946-62378965 | MS.gene048260:intron | 35.0% |
| AAGAGAGAGGGAAAAAATGG+AGG | + | chr2.3:62379158-62379177 | MS.gene048260:intron | 40.0% | |
| ACGAGACTACGAATTTCTTG+AGG | - | chr2.3:62377322-62377341 | None:intergenic | 40.0% | |
| AGAAGAAGAAGGAAACCGAA+CGG | + | chr2.3:62377095-62377114 | MS.gene048260:CDS | 40.0% | |
| AGAGAGAGGGAAAAAATGGA+GGG | + | chr2.3:62379159-62379178 | MS.gene048260:intron | 40.0% | |
| AGATACCGGGATTTGATAAG+TGG | + | chr2.3:62378658-62378677 | MS.gene048260:CDS | 40.0% | |
| AGCCCAAAGCAAAAACAAGA+GGG | - | chr2.3:62378952-62378971 | None:intergenic | 40.0% | |
| ATGTATTGCTATGCGGTGAA+TGG | + | chr2.3:62378567-62378586 | MS.gene048260:CDS | 40.0% | |
| ATTGGATCATCTTCTGCAAG+TGG | + | chr2.3:62379051-62379070 | MS.gene048260:intron | 40.0% | |
| CACTATAAGTGGTTGAAGAG+CGG | + | chr2.3:62377871-62377890 | MS.gene048260:intron | 40.0% | |
| CCCCAGTAATTTCAGCTAAA+TGG | - | chr2.3:62379278-62379297 | None:intergenic | 40.0% | |
| CTATAAAGGGTCGCTCAATT+TGG | - | chr2.3:62379483-62379502 | None:intergenic | 40.0% | |
| GCAACCAACATTCTCAACTT+AGG | - | chr2.3:62377730-62377749 | None:intergenic | 40.0% | |
| TACTCTCAATGGCACTTTGT+GGG | - | chr2.3:62377837-62377856 | None:intergenic | 40.0% | |
| TAGGTTCAAGGGGATAACTA+TGG | + | chr2.3:62378827-62378846 | MS.gene048260:CDS | 40.0% | |
| TGATAAGTGGATCATCGAGA+AGG | + | chr2.3:62378671-62378690 | MS.gene048260:CDS | 40.0% | |
| TGGCTGCTATTGCAAACTTT+GGG | + | chr2.3:62377932-62377951 | MS.gene048260:intron | 40.0% | |
| ! | AAGGCCTAAGTTGAGAATGT+TGG | + | chr2.3:62377723-62377742 | MS.gene048260:intron | 40.0% |
| ! | AGATCACAAGCTGATTCAGA+AGG | + | chr2.3:62379811-62379830 | MS.gene048260:CDS | 40.0% |
| ! | CTTGTGATCTTTTCCTCTGA+GGG | - | chr2.3:62379801-62379820 | None:intergenic | 40.0% |
| !! | AATGGGAAGAAAGTATTGCG+GGG | + | chr2.3:62377128-62377147 | MS.gene048260:CDS | 40.0% |
| !! | AGAAAGTATTGCGGGGATAA+CGG | + | chr2.3:62377135-62377154 | MS.gene048260:CDS | 40.0% |
| !! | CTTGAAGATGTCTAGTTCTC+AGG | + | chr2.3:62378902-62378921 | MS.gene048260:CDS | 40.0% |
| !! | GAATGGGAAGAAAGTATTGC+GGG | + | chr2.3:62377127-62377146 | MS.gene048260:CDS | 40.0% |
| !! | GGAATGGGAAGAAAGTATTG+CGG | + | chr2.3:62377126-62377145 | MS.gene048260:CDS | 40.0% |
| !! | TTCTTGGAGAGTTCTGAAGT+GGG | - | chr2.3:62377001-62377020 | None:intergenic | 40.0% |
| AAAGAACCTACCGATGGATC+CGG | - | chr2.3:62379212-62379231 | None:intergenic | 45.0% | |
| AACAGAGTCAGGCAAAGCAA+AGG | + | chr2.3:62378137-62378156 | MS.gene048260:intron | 45.0% | |
| AATGGCACTTTGTGGGACTA+TGG | - | chr2.3:62377830-62377849 | None:intergenic | 45.0% | |
| AATTCGTAGTCTCGTTCAGC+AGG | + | chr2.3:62377327-62377346 | MS.gene048260:CDS | 45.0% | |
| ACTCAAGTTCCTGGAGACAA+GGG | + | chr2.3:62379747-62379766 | MS.gene048260:CDS | 45.0% | |
| ACTGTTGCTGCTACTCTCAA+TGG | - | chr2.3:62377848-62377867 | None:intergenic | 45.0% | |
| AGAAGGAAACCGAACGGAAA+AGG | + | chr2.3:62377101-62377120 | MS.gene048260:CDS | 45.0% | |
| AGAGAGGGAAAAAATGGAGG+GGG | + | chr2.3:62379161-62379180 | MS.gene048260:intron | 45.0% | |
| AGCGAGAATGAGTTTACGGA+AGG | + | chr2.3:62377183-62377202 | MS.gene048260:CDS | 45.0% | |
| AGCTAGCGAAACAACAGAGA+TGG | + | chr2.3:62377032-62377051 | MS.gene048260:CDS | 45.0% | |
| AGTTAGCCAAAGATGTGCAG+GGG | - | chr2.3:62378604-62378623 | None:intergenic | 45.0% | |
| ATCCCACTACTATAGCGGTT+TGG | + | chr2.3:62377909-62377928 | MS.gene048260:intron | 45.0% | |
| ATTGAGAGTAGCAGCAACAG+TGG | + | chr2.3:62377847-62377866 | MS.gene048260:intron | 45.0% | |
| CACCAAACCGCTATAGTAGT+GGG | - | chr2.3:62377914-62377933 | None:intergenic | 45.0% | |
| CAGCCCAAAGCAAAAACAAG+AGG | - | chr2.3:62378953-62378972 | None:intergenic | 45.0% | |
| CAGTTAGCCAAAGATGTGCA+GGG | - | chr2.3:62378605-62378624 | None:intergenic | 45.0% | |
| CGAACGGAAAAGGAAGGAAT+GGG | + | chr2.3:62377111-62377130 | MS.gene048260:CDS | 45.0% | |
| CGCTCTTCAACCACTTATAG+TGG | - | chr2.3:62377873-62377892 | None:intergenic | 45.0% | |
| CTACTCTCAATGGCACTTTG+TGG | - | chr2.3:62377838-62377857 | None:intergenic | 45.0% | |
| GAGAGAGGGAAAAAATGGAG+GGG | + | chr2.3:62379160-62379179 | MS.gene048260:intron | 45.0% | |
| GAGCGACCCTTTATAGATGT+AGG | + | chr2.3:62379487-62379506 | MS.gene048260:intron | 45.0% | |
| GAGTTTACGGAAGGAGAGAA+TGG | + | chr2.3:62377192-62377211 | MS.gene048260:CDS | 45.0% | |
| GCGTAATCCCACTACTATAG+CGG | + | chr2.3:62377904-62377923 | MS.gene048260:intron | 45.0% | |
| GCTAGCGAAACAACAGAGAT+GGG | + | chr2.3:62377033-62377052 | MS.gene048260:CDS | 45.0% | |
| GGAAGGAGAGAATGGAGAAA+AGG | + | chr2.3:62377200-62377219 | MS.gene048260:CDS | 45.0% | |
| GGCAGATCGTAAGGATGATT+TGG | + | chr2.3:62378719-62378738 | MS.gene048260:CDS | 45.0% | |
| GGCTGCTATTGCAAACTTTG+GGG | + | chr2.3:62377933-62377952 | MS.gene048260:intron | 45.0% | |
| GGTTGGAGAGTGATCCTATA+GGG | + | chr2.3:62379183-62379202 | MS.gene048260:intron | 45.0% | |
| GTGGCTGCTATTGCAAACTT+TGG | + | chr2.3:62377931-62377950 | MS.gene048260:intron | 45.0% | |
| GTTGGAGAGTGATCCTATAG+GGG | + | chr2.3:62379184-62379203 | MS.gene048260:intron | 45.0% | |
| TACTCAAGTTCCTGGAGACA+AGG | + | chr2.3:62379746-62379765 | MS.gene048260:CDS | 45.0% | |
| TTCAGAACTCTCCAAGAACG+CGG | + | chr2.3:62377003-62377022 | MS.gene048260:CDS | 45.0% | |
| ! | ATGGAGAAAGCACAAGAGCA+AGG | + | chr2.3:62378846-62378865 | MS.gene048260:CDS | 45.0% |
| ! | CCATTCCTTCCTTTTCCGTT+CGG | - | chr2.3:62377113-62377132 | None:intergenic | 45.0% |
| ! | GCTTGTGATCTTTTCCTCTG+AGG | - | chr2.3:62379802-62379821 | None:intergenic | 45.0% |
| ! | GTATCTAACGGCTGATTCAG+AGG | + | chr2.3:62378743-62378762 | MS.gene048260:CDS | 45.0% |
| ! | TTTTCCAATCCCTTGTCTCC+AGG | - | chr2.3:62379759-62379778 | None:intergenic | 45.0% |
| !! | CGAAGTATTGGCAGATCGTA+AGG | + | chr2.3:62378710-62378729 | MS.gene048260:CDS | 45.0% |
| !! | GTTCTTGGAGAGTTCTGAAG+TGG | - | chr2.3:62377002-62377021 | None:intergenic | 45.0% |
| !! | TCTTTGCTGTTATCCCTCAG+AGG | + | chr2.3:62379785-62379804 | MS.gene048260:CDS | 45.0% |
| !! | TTTGATTATTAATTATTAAT+AGG | + | chr2.3:62377430-62377449 | MS.gene048260:intron | 5.0% |
| AACGGAGGAAGAGAGAGTGA+AGG | + | chr2.3:62377153-62377172 | MS.gene048260:CDS | 50.0% | |
| ACTTGTGTTTCCAGCTGCAG+TGG | - | chr2.3:62379085-62379104 | None:intergenic | 50.0% | |
| AGTTCCTGGAGACAAGGGAT+TGG | + | chr2.3:62379752-62379771 | MS.gene048260:CDS | 50.0% | |
| CACACTATAACGGTGTAGCG+TGG | + | chr2.3:62377782-62377801 | MS.gene048260:intron | 50.0% | |
| CCACCAAACCGCTATAGTAG+TGG | - | chr2.3:62377915-62377934 | None:intergenic | 50.0% | |
| CCAGTTAGCCAAAGATGTGC+AGG | - | chr2.3:62378606-62378625 | None:intergenic | 50.0% | |
| CCGAACGGAAAAGGAAGGAA+TGG | + | chr2.3:62377110-62377129 | MS.gene048260:CDS | 50.0% | |
| CCTGCACATCTTTGGCTAAC+TGG | + | chr2.3:62378603-62378622 | MS.gene048260:CDS | 50.0% | |
| GAAAGCAGAGAAGAAAGCGG+CGG | + | chr2.3:62377063-62377082 | MS.gene048260:CDS | 50.0% | |
| GAGAGGGAAAAAATGGAGGG+GGG | + | chr2.3:62379162-62379181 | MS.gene048260:intron | 50.0% | |
| GAGTGATCCTATAGGGGATC+CGG | + | chr2.3:62379190-62379209 | MS.gene048260:intron | 50.0% | |
| GCAACAGTGGCCACTATAAG+TGG | + | chr2.3:62377860-62377879 | MS.gene048260:intron | 50.0% | |
| GGAAACCGAACGGAAAAGGA+AGG | + | chr2.3:62377105-62377124 | MS.gene048260:CDS | 50.0% | |
| GGCGAAGGAGAAGAAGAAGA+AGG | + | chr2.3:62377084-62377103 | MS.gene048260:CDS | 50.0% | |
| GGGTTGGAGAGTGATCCTAT+AGG | + | chr2.3:62379182-62379201 | MS.gene048260:intron | 50.0% | |
| GTCAGGCAAAGCAAAGGACT+TGG | + | chr2.3:62378143-62378162 | MS.gene048260:intron | 50.0% | |
| GTGAAACCCCTGCACATCTT+TGG | + | chr2.3:62378595-62378614 | MS.gene048260:CDS | 50.0% | |
| TAGCTTCTTCTCCGCGTTCT+TGG | - | chr2.3:62377017-62377036 | None:intergenic | 50.0% | |
| TATAGGGGATCCGGATCCAT+CGG | + | chr2.3:62379199-62379218 | MS.gene048260:intron | 50.0% | |
| ! | AACAGTGGATTCGGGTTCGT+GGG | - | chr2.3:62376966-62376985 | None:intergenic | 50.0% |
| ! | AAGTATTGCGGGGATAACGG+AGG | + | chr2.3:62377138-62377157 | MS.gene048260:CDS | 50.0% |
| ! | CCACTACTATAGCGGTTTGG+TGG | + | chr2.3:62377912-62377931 | MS.gene048260:intron | 50.0% |
| !! | AGTTCTGAAGTGGGTTGTGG+TGG | - | chr2.3:62376992-62377011 | None:intergenic | 50.0% |
| !! | GAGAGTTCTGAAGTGGGTTG+TGG | - | chr2.3:62376995-62377014 | None:intergenic | 50.0% |
| !! | GTTGAAGAGCGGTGCTATCA+AGG | + | chr2.3:62377882-62377901 | MS.gene048260:intron | 50.0% |
| !! | TGGTGGTGGAACAGTGGATT+CGG | - | chr2.3:62376975-62376994 | None:intergenic | 50.0% |
| AACTGGCTGCGAAGGAGAGA+CGG | + | chr2.3:62378620-62378639 | MS.gene048260:CDS | 55.0% | |
| CTTTGGCTAACTGGCTGCGA+AGG | + | chr2.3:62378612-62378631 | MS.gene048260:CDS | 55.0% | |
| GATGGATCCGGATCCCCTAT+AGG | - | chr2.3:62379200-62379219 | None:intergenic | 55.0% | |
| GGACTATGGCGTAGTAGTGG+AGG | - | chr2.3:62377816-62377835 | None:intergenic | 55.0% | |
| GGGAAAAAATGGAGGGGGGT+TGG | + | chr2.3:62379166-62379185 | MS.gene048260:intron | 55.0% | |
| GTGGGACTATGGCGTAGTAG+TGG | - | chr2.3:62377819-62377838 | None:intergenic | 55.0% | |
| ! | GAACAGTGGATTCGGGTTCG+TGG | - | chr2.3:62376967-62376986 | None:intergenic | 55.0% |
| !! | GGTGGTGGAACAGTGGATTC+GGG | - | chr2.3:62376974-62376993 | None:intergenic | 55.0% |
| !! | TCTGAAGTGGGTTGTGGTGG+TGG | - | chr2.3:62376989-62377008 | None:intergenic | 55.0% |
| AACGGTGTAGCGTGGCAGTG+CGG | + | chr2.3:62377790-62377809 | MS.gene048260:intron | 60.0% | |
| AGAGAAGAAAGCGGCGGCGA+AGG | + | chr2.3:62377069-62377088 | MS.gene048260:CDS | 60.0% | |
| ! | GTGGATTCGGGTTCGTGGGT+TGG | - | chr2.3:62376962-62376981 | None:intergenic | 60.0% |
| !! | GGAAGTGCTTCCACTGCAGC+TGG | + | chr2.3:62379072-62379091 | MS.gene048260:intron | 60.0% |
| !! | GGGTTGTGGTGGTGGAACAG+TGG | - | chr2.3:62376981-62377000 | None:intergenic | 60.0% |
| GGGGATCCGGATCCATCGGT+AGG | + | chr2.3:62379203-62379222 | MS.gene048260:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.3 | gene | 62376953 | 62379969 | 62376953 | ID=MS.gene048260 |
| chr2.3 | mRNA | 62376953 | 62379969 | 62376953 | ID=MS.gene048260.t1;Parent=MS.gene048260 |
| chr2.3 | exon | 62376953 | 62377348 | 62376953 | ID=MS.gene048260.t1.exon1;Parent=MS.gene048260.t1 |
| chr2.3 | CDS | 62376953 | 62377348 | 62376953 | ID=cds.MS.gene048260.t1;Parent=MS.gene048260.t1 |
| chr2.3 | exon | 62378564 | 62378923 | 62378564 | ID=MS.gene048260.t1.exon2;Parent=MS.gene048260.t1 |
| chr2.3 | CDS | 62378564 | 62378923 | 62378564 | ID=cds.MS.gene048260.t1;Parent=MS.gene048260.t1 |
| chr2.3 | exon | 62379715 | 62379969 | 62379715 | ID=MS.gene048260.t1.exon3;Parent=MS.gene048260.t1 |
| chr2.3 | CDS | 62379715 | 62379969 | 62379715 | ID=cds.MS.gene048260.t1;Parent=MS.gene048260.t1 |
| Gene Sequence |
| Protein sequence |
