AlfalfaGEDB | MS.gene048407

M. sativa cultivar XinJiangDaYe / MS.gene048407

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030246 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28 PF00139.22

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene048407.t1	XP_013446070.1	93.7	651	41	0	1	651	20	670	0.00E+00	1241.5

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene048407.t1	Q9LXA5	55.7	659	276	10	1	651	1	651	8.6e-199	694.9

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene048407.t1	A0A072TRQ6	93.7	651	41	0	1	651	20	670	0.0e+00	1241.5

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI:

Show entries

Search:

Gene1	Gene2	Type
MS.gene000818	MS.gene048407	PPI
MS.gene000819	MS.gene048407	PPI
MS.gene000820	MS.gene048407	PPI
MS.gene000823	MS.gene048407	PPI
MS.gene000832	MS.gene048407	PPI
MS.gene035518	MS.gene048407	PPI
MS.gene048407	MS.gene000826	PPI
MS.gene048407	MS.gene055225	PPI
MS.gene048407	MS.gene89348	PPI
MS.gene048407	MS.gene46132	PPI

Showing 1 to 10 of 38 entries

Previous1 2 3 4Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene048407.t1	MTR_8g067735	93.702	651	41	0	1	651	20	670	0.0	1268
MS.gene048407.t1	MTR_8g067930	83.564	651	107	0	1	651	1	651	0.0	1141
MS.gene048407.t1	MTR_8g067720	76.570	653	148	4	1	651	1	650	0.0	1028
MS.gene048407.t1	MTR_8g067690	73.810	630	143	3	23	651	59	667	0.0	946
MS.gene048407.t1	MTR_8g067630	70.968	651	131	4	1	651	7	599	0.0	915
MS.gene048407.t1	MTR_8g068050	52.516	636	283	11	5	632	22	646	0.0	631
MS.gene048407.t1	MTR_4g093080	46.729	642	312	9	5	629	9	637	0.0	595
MS.gene048407.t1	MTR_4g093040	48.372	645	294	15	22	639	31	663	0.0	530
MS.gene048407.t1	MTR_4g093070	45.649	609	303	10	41	629	37	637	7.73e-177	518
MS.gene048407.t1	MTR_7g115740	44.838	649	305	17	25	639	26	655	3.35e-174	511

Showing 1 to 10 of 505 entries

Previous1 2 3 4 5…51Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene048407.t1	AT5G10530	56.309	634	265	8	1	630	1	626	0.0	719
MS.gene048407.t1	AT5G65600	52.640	625	268	13	24	631	35	648	0.0	634
MS.gene048407.t1	AT5G06740	37.647	595	338	15	63	646	69	641	3.09e-125	385
MS.gene048407.t1	AT5G06740	37.647	595	338	15	63	646	81	653	4.07e-125	385
MS.gene048407.t1	AT5G55830	35.385	650	362	14	20	629	26	657	1.87e-124	384
MS.gene048407.t1	AT4G29050	37.866	581	319	12	65	619	74	638	7.27e-122	377
MS.gene048407.t1	AT4G29050	37.866	581	319	12	65	619	60	624	8.16e-122	377
MS.gene048407.t1	AT3G53810	35.968	620	363	13	22	620	22	628	5.93e-121	375
MS.gene048407.t1	AT2G37710	35.959	584	330	12	63	620	62	627	6.35e-119	370
MS.gene048407.t1	AT4G02410	34.646	635	364	13	18	620	20	635	1.62e-117	366

Showing 1 to 10 of 501 entries

Previous1 2 3 4 5…51Next

Find 143 sgRNAs with CRISPR-Local

Find 165 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAGAAGCGATAAGCAAA+AGG	0.508484	8.3:+35460895	MS.gene048407:CDS
AAAGAGGAGCAGGTCCAAGA+AGG	0.583703	8.3:+35460957	MS.gene048407:CDS
AAATTAACTTCTCCATCACG+AGG	0.703123	8.3:-35460134	None:intergenic
AAATTAAGGACAAGTAGAAA+AGG	0.431485	8.3:-35460022	None:intergenic
AAATTAATGGACCATGAACT+TGG	0.397247	8.3:+35461457	MS.gene048407:CDS
AACGTTCGGCTATCTAGCTC+CGG	0.519279	8.3:+35461504	MS.gene048407:CDS
AACTCCACTTTGGCCAAAAG+TGG	0.497783	8.3:+35460761	MS.gene048407:CDS
AACTTGAAGGCTATTGGTTA+TGG	0.336424	8.3:-35461920	None:intergenic
AACTTGGGCCTCAAACAACT+GGG	0.554049	8.3:+35461473	MS.gene048407:CDS
AAGAGCATGGAATGATTGAA+TGG	0.489773	8.3:+35461641	MS.gene048407:CDS

Showing 1 to 10 of 143 entries

Previous1 2 3 4 5…15Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAGGAAAAAAATGAAGAGCA+TGG	+	chr8.3:35461628-35461647	MS.gene048407:CDS	30.0%
ATAAATGATGACCTAGAAAG+AGG	+	chr8.3:35460941-35460960	MS.gene048407:CDS	30.0%
ATAATACTAACGGTTTCTTG+TGG	+	chr8.3:35460815-35460834	MS.gene048407:CDS	30.0%
ATTTATGAGTTCATGCCAAA+TGG	+	chr8.3:35461235-35461254	MS.gene048407:CDS	30.0%
CTGTGAAGAAAATATCAAGA+GGG	+	chr8.3:35461098-35461117	MS.gene048407:CDS	30.0%
GCTTTATCTACATGAAGAAT+GGG	+	chr8.3:35461345-35461364	MS.gene048407:CDS	30.0%
GGGGATATTGAAGAAAATTA+AGG	-	chr8.3:35460039-35460058	None:intergenic	30.0%
GGTAGATCACCTTTATATTA+TGG	+	chr8.3:35460287-35460306	MS.gene048407:CDS	30.0%
TAATACTAACGGTTTCTTGT+GGG	+	chr8.3:35460816-35460835	MS.gene048407:CDS	30.0%
TAATGAAAGTTATGCCTGAA+TGG	+	chr8.3:35460669-35460688	MS.gene048407:CDS	30.0%

Showing 1 to 10 of 165 entries

Previous1 2 3 4 5…17Next

Chromosome	Type	Strat	End	Strand	Name
chr8.3	gene	35459996	35461951	35459996	ID=MS.gene048407
chr8.3	mRNA	35459996	35461951	35459996	ID=MS.gene048407.t1;Parent=MS.gene048407
chr8.3	exon	35459996	35461951	35459996	ID=MS.gene048407.t1.exon1;Parent=MS.gene048407.t1
chr8.3	CDS	35459996	35461951	35459996	ID=cds.MS.gene048407.t1;Parent=MS.gene048407.t1

Gene Sequence

>MS.gene048407

ATGGCTTCCAGTATCTATATCCTAACCCTTTTCTACTTGTCCTTAATTTTCTTCAATATCCCCGCTAGCTCAATTCACTTCAAATATCCCAGTTTTGATCCTAGTGATGCCAACATAGTCTACCAAGGTGCTGCAGCACCTCGTGATGGAGAAGTTAATTTCAACATCAATGTAAATTATTCATGTCAAGTTGGAAGAGTCTTCTATTCAGAAAAAGTGTTACTTTGGGATTCAAACACAGGAAAACTCACTGACTTCACAACTCATTACACTTTTGTCATCAACACTCAAGGTAGATCACCTTTATATTATGGCCATGGCCTTGCCTTTTTCTTGGTTCCTTTTGGATTTGAAATCCCACTCAATTCTTATGGTGGCTTTATGGGTCTATTTAACACCACAACAATGGTTTCATCTAGTAACCAAATTGTTCATGTAGAATTTGATTCTTTCGCAAATCGTGCAAATCGCGAGACAAGAGGTCATGTGGGAATCAACATTAATTCAATCATTTCATCAGCTACGACACCTTGGAATGCCAGCAAACATAGTGGTGACACTGCTGAGGTATGGATTAGGTACAATTCTACAACCAAGAATTTGACTGTATCTTGGAAATACGAAACTACCTCAAATCCTGAAGAAAATACTAGTCTTTCATTTTCAATTGATTTAATGAAAGTTATGCCTGAATGGATTACTGTAGGATTTTCTGCTTCATCAAATCATATTAAAGAATTAAATTATCTCTTGTCATGGGAATTCAACTCCACTTTGGCCAAAAGTGGTGATAGTAGTACAAAAGAGACAAGATTAGTTATAATACTAACGGTTTCTTGTGGGGTTATAGTTATAGGAGTGGGAGCATTAGTAGCATATGCATTACTTTGGAGGAAAAGAAAGAGAAGCGATAAGCAAAAGGATGAAGCTATGCATTTAACTTCAATAAATGATGACCTAGAAAGAGGAGCAGGTCCAAGAAGGTTCACCTACAAAGAACTTGATTTGGCAACCAATAACTTCTCTAAGGATAGAAAGTTGGGTCAAGGTGGTTTTGGAGCTGTTTATAAAGGTTACTTTGCTGATTTAGATTTACAAGTTGCTGTGAAGAAAATATCAAGAGGGTCAAGACAAGGTAAGAAAGAGTACGTAACTGAAGTTAAAGTCATTAGTCAACTGAGACATAAGAATCTTGTGAAGCTTTTGGGTTGGTGCCATGACAAAGGTGAGTTTTTACTTATTTATGAGTTCATGCCAAATGGTAGTCTTGATTCTCATTTATTTGGTAAAAGGACACCTCTTTCTTGGAGTGTAAGGCACAAAATAACTCTTGGATTGGCCTCCGGTTTGCTTTATCTACATGAAGAATGGGAGAGGTGTGTGGTACATAGGGATATTAAATCAAGTAATGTTATGTTAGATTCTAGTTTTAATGTTAAGCTAGGTGATTTTGGGTTGGCTAAATTAATGGACCATGAACTTGGGCCTCAAACAACTGGGCTGGCCGGAACGTTCGGCTATCTAGCTCCGGAATATGTGAGCACAGGTAGGGCAAGTAAAGAGTCAGATGTGTATAGTTTTGGGATAGTTGTTTTGGAGATTACTACTGGTAAGAAAGCTACTGAAGTGATGAAGGAAAAAAATGAAGAGCATGGAATGATTGAATGGGTTTGGGATCATTATGGAAGAGGAGAGCTACTTGTGGTCATGGATGAAAATTTGCAAAATGATTTTGATGAGAAACAACTAGAGTGCTTGATGATTGTTGGATTGTGGTGTGCTCATCCTGATGTTAGTCTAAGACCATCGATTAGACAAGCAATTCAAGTGCTTAATTTTGAGGTTGCCTTGCCAAATCTTCCATCAAAGAGGCCAGTTGCAACCTATCATGTTCCTTCATCATCGGTAAGCTCCGTGGAAGCTTCCATAACCAATAGCCTTCAAGTTGGTCGTTAA

Protein sequence

>MS.gene048407.t1

MASSIYILTLFYLSLIFFNIPASSIHFKYPSFDPSDANIVYQGAAAPRDGEVNFNINVNYSCQVGRVFYSEKVLLWDSNTGKLTDFTTHYTFVINTQGRSPLYYGHGLAFFLVPFGFEIPLNSYGGFMGLFNTTTMVSSSNQIVHVEFDSFANRANRETRGHVGININSIISSATTPWNASKHSGDTAEVWIRYNSTTKNLTVSWKYETTSNPEENTSLSFSIDLMKVMPEWITVGFSASSNHIKELNYLLSWEFNSTLAKSGDSSTKETRLVIILTVSCGVIVIGVGALVAYALLWRKRKRSDKQKDEAMHLTSINDDLERGAGPRRFTYKELDLATNNFSKDRKLGQGGFGAVYKGYFADLDLQVAVKKISRGSRQGKKEYVTEVKVISQLRHKNLVKLLGWCHDKGEFLLIYEFMPNGSLDSHLFGKRTPLSWSVRHKITLGLASGLLYLHEEWERCVVHRDIKSSNVMLDSSFNVKLGDFGLAKLMDHELGPQTTGLAGTFGYLAPEYVSTGRASKESDVYSFGIVVLEITTGKKATEVMKEKNEEHGMIEWVWDHYGRGELLVVMDENLQNDFDEKQLECLMIVGLWCAHPDVSLRPSIRQAIQVLNFEVALPNLPSKRPVATYHVPSSSVSSVEASITNSLQVGR