AlfalfaGEDB | MS.gene048647

M. sativa cultivar XinJiangDaYe / MS.gene048647

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515 GO:0046983
PFAM: PF00010.29

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene048647.t1	XP_003625196.1	96.3	328	12	0	1	328	1	328	1.70E-162	582

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene048647.t1	Q8VZ02	53.5	318	95	7	15	310	21	307	5.9e-63	242.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene048647.t1	A2Q3E9	96.3	328	12	0	1	328	1	328	1.2e-162	582.0

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene048647.t1	TF	bHLH

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene017944	MS.gene048647	PPI
MS.gene048647	MS.gene048648	PPI
MS.gene048647	MS.gene072362	PPI
MS.gene048647	MS.gene014167	PPI
MS.gene048647	MS.gene072361	PPI
MS.gene066418	MS.gene048647	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene048647.t1	MTR_7g092510	97.256	328	9	0	1	328	1	328	0.0	663
MS.gene048647.t1	MTR_1g059270	67.560	336	79	8	1	328	1	314	1.13e-137	393
MS.gene048647.t1	MTR_1g059270	66.917	266	59	7	1	258	1	245	1.26e-98	291
MS.gene048647.t1	MTR_7g053410	47.343	207	77	6	129	319	259	449	1.21e-46	165
MS.gene048647.t1	MTR_7g053410	47.343	207	77	6	129	319	259	449	1.78e-46	165
MS.gene048647.t1	MTR_4g070320	61.417	127	45	1	132	258	106	228	1.16e-43	153
MS.gene048647.t1	MTR_3g116770	57.037	135	49	2	130	255	139	273	3.90e-43	153
MS.gene048647.t1	MTR_3g116770	57.037	135	49	2	130	255	139	273	4.07e-43	153
MS.gene048647.t1	MTR_1g017350	62.185	119	44	1	140	258	228	345	7.28e-43	153
MS.gene048647.t1	MTR_1g017350	62.185	119	44	1	140	258	228	345	8.37e-43	153

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene048647.t1	AT3G57800	51.940	335	108	10	15	308	24	346	1.04e-91	278
MS.gene048647.t1	AT2G42300	48.795	332	109	8	15	319	21	318	7.15e-87	264
MS.gene048647.t1	AT3G57800	45.550	382	108	11	15	308	24	393	4.05e-82	255
MS.gene048647.t1	AT2G42300	50.704	284	95	7	3	260	8	272	1.03e-73	229
MS.gene048647.t1	AT3G07340	41.538	260	100	8	78	311	140	373	3.02e-48	167
MS.gene048647.t1	AT3G07340	41.538	260	100	8	78	311	140	373	5.14e-48	167
MS.gene048647.t1	AT1G26260	41.810	232	89	6	73	258	77	308	3.65e-44	155
MS.gene048647.t1	AT1G26260	41.810	232	89	6	73	258	77	308	3.65e-44	155
MS.gene048647.t1	AT1G26260	41.810	232	89	6	73	258	77	308	3.65e-44	155
MS.gene048647.t1	AT1G26260	41.810	232	89	6	73	258	77	308	3.65e-44	155

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Find 80 sgRNAs with CRISPR-Local

Find 400 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACGGACCTTGTCGCAACC+TGG	0.470484	7.2:-16472236	None:intergenic
AAAGGCGTAACCATGGCGCT+AGG	0.639275	7.2:-16477029	None:intergenic
AAATTTCCGTTTGAAGAGTT+TGG	0.262828	7.2:-16471612	None:intergenic
AACGGACCTTGTCGCAACCT+GGG	0.539729	7.2:-16472235	None:intergenic
AACTCTACAACGTCAAGTGG+AGG	0.635936	7.2:+16475700	MS.gene048647:CDS
AATTCAAGGAATTATGGTTC+CGG	0.452402	7.2:+16471488	MS.gene048647:CDS
AATTTCCGTTTGAAGAGTTT+GGG	0.358426	7.2:-16471611	None:intergenic
ACACACTCTTGCGTCGAGCA+AGG	0.543799	7.2:-16471774	None:intergenic
ACAGATATCTGGAACGGCGT+TGG	0.584492	7.2:+16475649	MS.gene048647:intron
ACCATCGCCGATGAAACTTC+CGG	0.506458	7.2:+16471977	MS.gene048647:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATCCACAGTATGTTTAG+AGG	-	chr7.2:16476090-16476109	None:intergenic	30.0%
AAATTTCCGTTTGAAGAGTT+TGG	-	chr7.2:16471615-16471634	None:intergenic	30.0%
AAGAAGGTAACGATGAAATT+AGG	+	chr7.2:16471852-16471871	MS.gene048647:intron	30.0%
AAGGTTGCACATTAAACTTA+TGG	-	chr7.2:16473809-16473828	None:intergenic	30.0%
AATGAAAGTGGATAGAAAGT+GGG	+	chr7.2:16472782-16472801	MS.gene048647:intron	30.0%
AATGATTCAGTCAAGTCAAA+AGG	-	chr7.2:16473828-16473847	None:intergenic	30.0%
AATTACACAGATACCAAGTT+TGG	-	chr7.2:16472500-16472519	None:intergenic	30.0%
AATTCAAGGAATTATGGTTC+CGG	+	chr7.2:16471488-16471507	MS.gene048647:CDS	30.0%
AATTCTCATGGGAATTCTAT+AGG	-	chr7.2:16474812-16474831	None:intergenic	30.0%
AATTTCCGTTTGAAGAGTTT+GGG	-	chr7.2:16471614-16471633	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.2	gene	16471423	16477212	16471423	ID=MS.gene048647
chr7.2	mRNA	16471423	16477212	16471423	ID=MS.gene048647.t1;Parent=MS.gene048647
chr7.2	exon	16471423	16471857	16471423	ID=MS.gene048647.t1.exon1;Parent=MS.gene048647.t1
chr7.2	CDS	16471423	16471857	16471423	ID=cds.MS.gene048647.t1;Parent=MS.gene048647.t1
chr7.2	exon	16471947	16472078	16471947	ID=MS.gene048647.t1.exon2;Parent=MS.gene048647.t1
chr7.2	CDS	16471947	16472078	16471947	ID=cds.MS.gene048647.t1;Parent=MS.gene048647.t1
chr7.2	exon	16472185	16472250	16472185	ID=MS.gene048647.t1.exon3;Parent=MS.gene048647.t1
chr7.2	CDS	16472185	16472250	16472185	ID=cds.MS.gene048647.t1;Parent=MS.gene048647.t1
chr7.2	exon	16475653	16475721	16475653	ID=MS.gene048647.t1.exon4;Parent=MS.gene048647.t1
chr7.2	CDS	16475653	16475721	16475653	ID=cds.MS.gene048647.t1;Parent=MS.gene048647.t1
chr7.2	exon	16476297	16476368	16476297	ID=MS.gene048647.t1.exon5;Parent=MS.gene048647.t1
chr7.2	CDS	16476297	16476368	16476297	ID=cds.MS.gene048647.t1;Parent=MS.gene048647.t1
chr7.2	exon	16477002	16477212	16477002	ID=MS.gene048647.t1.exon6;Parent=MS.gene048647.t1
chr7.2	CDS	16477002	16477212	16477002	ID=cds.MS.gene048647.t1;Parent=MS.gene048647.t1

Gene Sequence

>MS.gene048647

ATGGAACAAGCTACAGTAGGATTAAGTGGATCCATTCACGACGATTCTGTTCAATTTGACGAAGAAATTCAAGGAATTATGGTTCCGGCGCCGGCACCGGAAAACGCAAGCTCATTCACCGCACTGTTAGAGCTTCCACCTACGCTGGCGGTGGAGCTACTTCATTTGCCTGAGCAGAAACCCTATCTCCCAAACTCTTCAAACGGAAATTTAACTTTTCCTACTAACGCCGCGTTGATTGAACGCGCCGCGAAATTCTCAGTGTTCGCCGGAGAGAATTCTTCACCGGGAGATGAGCGGCTTTTTCCGGTGGAAAGTGTGAAGAACGAGCCTCAAGAGACTGATTCGAATCCTTGCTCGACGCAAGAGTGTGTTTCGGATCCAGCTGAGAACAAGAATCAGAGAAACGTGAAGAGAAAAGAGCGAGAGAAGAAGGTAACGATGAAATTAGGGTTTCTGTTTTGTTTTTTCAGTTGAATTGAGTTATGAAAACATGAAATAATCGATAATTTTGTGAAATTTAGGGTAAAGCGTCGTCGTCGAAGAAGAGTAAGACCATCGCCGATGAAACTTCCGGTGACGGTGAGAAGCTTCCCTATGTTCACGTTCGCGTCCGACGAGGTCAAGCCACTGATAGCCATAGCTTGGCAGAACGAGTAACCTTCTCACTAATCACTAATTAATTTATTTAATTTCAATCACTTATCTATAAATGAAGTTAATTATCTTTATTAAAATTAATTAATTGCTTTTGGGGTGTAGGCTAGGAGAGAGAAGATTAATGCTCGTATGAAGCTTTTACAAGAGCTGGTCCCAGGTTGCGACAAGGTCCGTTTTTCTCTTTTAATCTTTAATTTTAAAACCTTAAATCCTTAGTTACGTAGAATAATCAATGATTAATTATGCTTCATTGATTTTGAGTGTGGATTAATCTATCATTTTCTGTCAAGTTTGTTCCCCTAAAGTGCAAATAAATATCTTAAGTTACGATTTAATAACGGTTTTGTTATTGGACCTTTTCAAACCCCACAAAAAGTAGTACTGTAGTTGCTTTCACGTCAAGATAGAGAAGTGCCAAACTTGGTATCTGTGTAATTTCACCTTCTCTTTGGTTTCACTTTATTGGGATTTCCTTCTGGTTACAAATCTTTTTCGAAGGTTAGTGTTGCCCAATTTTTCAACCCTTTACCCTCTTTTCTGACATTGACCTTCTCTACAGGTTTATTAGATGCTCAGTTTTTTTTTTTTTTTTTCTTTCTTTCTCAAATAGTCTAATAGATGAAAATTCATGCTTTAGGGTGTGTTTGGATCAGAAGAGAAAGTGAAAGGAAAGAAAGTAATAGGAAAGAATGTAAAAGGAATGAAAGTGGATAGAAAGTGGGTAGAAAGTGAGATGATTTGTATAGTTGTTTGGTTTGAGTGATAGTGAGAAGAAAGTGAAAGGAAAGATAGTTATATAGTTAGTAAATTGACATAAATATCCCTACATAATAAATATAATATTTAAAGTATTTATAAATATAGATATAATATATAGATATAAATAACTACCGTCTTAAATTTAAAACAAGTAAATTTCTAAGTATATATATTTTTTGTTGGAAGTAATTTATAAGTATATTATATTATATTATAAATTAAAGAAAAGAATATTAATTAAAGAAAAAAAATAACGTTGATATCAATGCAATGGTTCTTTTGTAATTTATGCATTCCCTCATGTTTCTGTGCTTTGTGGGGTGGAAAAGTTTCAGACCGTGGACCCCACAAAAATCACACTTTCTTTCCTCTCTAACATTGAACCAAACCATGGAAACACTATGGAAACACGTTTATCGAGAAACTTTCTATCCCTTGTGTTTTCTTTCCCTAACCTATCTGCTGATCCAAACACACCCTTAAGGTGAATAAATTAGAAATTTGAGGTTCGAACTTCCATCATGTATGTTACAATATCTTTGCCAACCGAGTTATTAAATTTTACTAGTATAATGTAATATTTTTATTTTTTTTTATTCTTTTAATTTCAATTTATGTATCTTGGACTTTTTTTAGCAAGTTGGGTCAATTTGGGAAATAGATTCTCTGGAATAGTTTTTATTCTTTTATTCAATTTTTGGGTCTTCCTTATGAGAAATTCTAATATGGTCACGAGACCAAACAAATAGTGTTTGGTCACACACACATAAACAAATATTTTTTTAATGATGAAAAGAAAATTGATAACAAAATAATTGAATATTTTAAAGATAATATCTTCATGTAAGTGTGTCCAAAAACTATTTATTTGGTCTTGTGACCATGGAAGAATAGCTCCTTCCTTATGCCTACCATCACTGTACATGATGTTAGTAAACCTCGTTTAATGCAAAACATTTTTTCCCCATAAGTTTAATGTGCAACCTTTTGACTTGACTGAATCATTGACATTTTATTATGAATCACATGGAATTTTCTTTCACCAAGTATTATCACGAGGCACAAGTCCCTCCATGTGTTACTTCGAGACATTTTATATGTGTTGAGGAGTATTAAATTTTGACCATCCATTTGTGTTGCACATGTAGGATTAGTCTTTTTTTAATGAACACAATTCCTTGTTATGCGCTCCTTGGTCCTTGTATGCTTGGGTGGATGTTCTTTTTAAGAAGGAATATAGATATACATAAAAGTGGTCACTAGTATTTCTTAAAATGTATGCCAATCTGTGAAACTGAAAGAGATTAGTGAACTAAACTTGCTTATATAAGCTTTCGATTGATGAGAATGGTGTGTGAGCTGACATCTTATTTTTAAACATTTTTTTGTTCTTGTTAATCGTTGATAAACTTTTAGTTAAAGTCAGTAGTTTAATGAACACACAAGATAGTGCCTTCTAAAAGGTTATATGACACGTGATCTAGACCTAGTATATTGGATATCTGCCTCGCTGCACATGTGTTATAACAAGAAGAACAAAAATATGACATTTTTTTACTAGCTTCTTTGTGTTAGATTTTGTTTAATTTAAACGTGGAAACACTGTTGTACAGTTTTCATGAGGACAGAATTTTTCACTTCCACCAAAATGTATTGGAACACTAGAATTTAACAGTTTATCTTTGCGTTGAATTTAATCTAGGCCAAACATAGTAACACCAAAAGGGATCAAAATTAAAAAATACTCCAATTTGATGAATTGGTTCAATCACCAGTGTCATAGTTTGGTAAAAAAACATCACCAATAATATTGGTTTATCTCTATAACATTTTTCCTCCAATGTTAGTTTTAGACGCTCTCGCTTTGCTTTAATGTCTATTGCTAGTCTTAAATGTTTATTGCACCTTTATATAATAAATCTTTATTTGCTTAGATGTTAAGTTAAATGTCAAAAAAAATGAGCACTCCTATAGAATTCCCATGAGAATTGGTAGTATAATGTAAAATAAAGTGGGTAGTTTTTTGTGATGTAATGTTTGTTTGATTTCAGGGACATGTATCCATGTTATTAGTTCAATGATTAAAGTGCAGCTCCTAACAAGAAGTAAAATGAATGGATTAAATTTGTTACTTAATGTCTGTACCATTGATTGTATACGACGTTTATAGTATTTCCCCTTTAATATCTTCTGGCTTATCGTGGAGGCCAAATGGTAAGCATGTGGGTTAGTGTGGGGTGGGTGGGAGGTGAGATGGGAGGGGGTGGGGTTAGAGCTACTTAACTTCTATCCATTTTGCATCAAGGGGTCCCCTTTGTAAGTAAGTGAATGATTTGTCCATCTTATGATGGCTGCGGTGCCATTATGGCATTATCTCTATGACTATAGGTTCGGTAATAGAGTCCATCAGTAAAGGATGACAAAATGGGGCGAGAACAGAGTGCATACTTTTGGAGTGCTTCTACCAACCAAGAGAGCTAACTGGATTAGAACATTTGTACATGATCGTGTTAATGCGTCATCGAAACACCTAATGTCTAATATTAAGAACCATGATGATAGTTATAGTAGGAGTTGTAGTATTAAACTATAATAAACATAAATAGCACCAGTAGTAGCCGTAACAGAACAGTAATAACAATATTACAGACTTGTTCCATAAATGATCCCTTGTTATTGTTTGAGGTAGAAGCCTTAATTGCACGGATAATATGATGTTATAATGCATTTGGTCAATTGTGTTGCATTTTCTCAAAATAGCTAATATCTGTCAAATATAGTTGATGCCTGACATGACATGATTTACTACAGATATCTGGAACGGCGTTGGTTCTGGATGAAATCATCAACCATGTGCAAACTCTACAACGTCAAGTGGAGGTTGGACTCTTCACTCTGCAAATATTTTACATGAATCTATTTTTACATTCAGCAGGCTATACATGTTTATTATTTTCTATTTGGTTCTCAATTAATCATGGATTATTCATAGAAACTTTTGAAAGAAAGGGTTGAGTTTCCTTCCTAAATTATTTTCTTCTTCAAAATTGATATTTGGTCCTCTAGAGCTAGGGTGCAGTACTTGAATATTTTGGAGTGTCATTGGAACACATAAAGGATTGCTTACCTGTAAGCAAGCAGTAAGCATTATACATCACACATTAAGCTGCCATGGTCCCATAATTTTGGATTATTTGACTTAGAATCTATAAAAAAATCCTTTTCTCAATGGGTCTACTTATTATCCTCTAAACATACTGTGGATTTTTTGCATGCTTATTGGTATGTACTATAGTGTGTGTGCTCAAAAGTTATAATAATACTCTTGTAATATTTTGTCAAATAACCATGTTTTGAAATGAATGGTGAGTCTAATCTGAGAAAATATCTCACTATTTACGAGTTAACTTTCATCAAAATGGTTTTATTCTCATTGATTTACGCACTAATTGCAGATCTTATCAATGAAACTGGCAGCTGTTAACCCAAGAATTGATTTCAACTTAGACAGGTTATTGGCTGCTGATGTAAGTATTATAAGTTAATCTAACTCAATTTTATCTTTTGTTGAAAAAAAAAGATAATTCATTTATTTATTTCCCGGGCTGGGGGAGCAATCTGAATGATGGAAAATATATGACCTCTGCTTACATAGCACTTTCTATTCTTCCTTAATTGGTTCCATGGTCACTTTGTATATAGTGTAGTTGTGCTTGCTTAATGTGTATTTGTCCAATAACTGAAATGGTACATTGGGGATACTAAAAGATGATTGTCGCCAATTACGGTGGTTTATGCCATTCTGTTGGAGGTCTTGCCATAACAACTAAGATCTGTAATTTATTAAACAAGTAGCAATGTGAGTGTTGGTAGGGCCAATAAGTGCTTAGGTTTACACTAGGTTGCCTAAATCTATCCTATTATTTAATTATGGATCCTCGAGCATATTGAAGTTTAAGCCATATCATCTCAATCTCCTTAATCAAGGTCAGGAGTTGCTTGCTTGGTTTGTGGAATAAAAAATGAGTGTTTGAATGTCTTCAACTAGGTTTGGAGTTGGGGGTGTGTGATTTTGATGAAGTACTGTGATTTTTATTACAAGTTCAGCCTTTTCAGTTAACGTTGAGAACCGGTGATAAAATCTCCTTGGTAATTTACAGGGGTCGTCTTTATTGGACAGTAACTTACCTAGCGCCATGGTTACGCCTTTGGTGTGGCCAGAAATGCCACTCAACAGTAACAGACAGCATTATCAACAACAGTGGCAATTCGATGCATTCCATCAACCACTCTGGGGAAGGGAAGATGACATTCATAATTTCACGACTCCAGAAAACTCACTTTTGAGTTATAACTCCTCAGCAAATTCAG

Protein sequence

>MS.gene048647.t1

MEQATVGLSGSIHDDSVQFDEEIQGIMVPAPAPENASSFTALLELPPTLAVELLHLPEQKPYLPNSSNGNLTFPTNAALIERAAKFSVFAGENSSPGDERLFPVESVKNEPQETDSNPCSTQECVSDPAENKNQRNVKRKEREKKGKASSSKKSKTIADETSGDGEKLPYVHVRVRRGQATDSHSLAERARREKINARMKLLQELVPGCDKISGTALVLDEIINHVQTLQRQVEILSMKLAAVNPRIDFNLDRLLAADGSSLLDSNLPSAMVTPLVWPEMPLNSNRQHYQQQWQFDAFHQPLWGREDDIHNFTTPENSLLSYNSSANS