Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048686.t1 | XP_003600695.2 | 84.4 | 352 | 49 | 3 | 1 | 346 | 1 | 352 | 2.80E-131 | 478.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048686.t1 | A0A396IYR1 | 84.4 | 352 | 49 | 3 | 1 | 346 | 1 | 352 | 2.0e-131 | 478.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene048686 | MS.gene049594 | PPI |
| MS.gene98045 | MS.gene048686 | PPI |
| MS.gene048686 | MS.gene017247 | PPI |
| MS.gene048686 | MS.gene26246 | PPI |
| MS.gene048686 | MS.gene05127 | PPI |
| MS.gene048686 | MS.gene53889 | PPI |
| MS.gene048686 | MS.gene009653 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048686.t1 | MTR_3g065180 | 88.529 | 340 | 33 | 3 | 13 | 346 | 1 | 340 | 0.0 | 552 |
| MS.gene048686.t1 | MTR_7g056407 | 68.696 | 345 | 91 | 7 | 13 | 346 | 1 | 339 | 1.16e-133 | 384 |
| MS.gene048686.t1 | MTR_8g013650 | 64.151 | 53 | 19 | 0 | 294 | 346 | 182 | 234 | 6.32e-22 | 93.2 |
| MS.gene048686.t1 | MTR_4g132760 | 36.170 | 141 | 68 | 3 | 208 | 346 | 97 | 217 | 2.38e-20 | 88.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048686.t1 | AT3G07120 | 35.215 | 372 | 191 | 12 | 13 | 346 | 1 | 360 | 3.89e-49 | 169 |
| MS.gene048686.t1 | AT3G25030 | 42.742 | 124 | 54 | 2 | 227 | 346 | 100 | 210 | 6.22e-25 | 100 |
| MS.gene048686.t1 | AT3G25030 | 42.742 | 124 | 54 | 2 | 227 | 346 | 140 | 250 | 6.77e-25 | 101 |
| MS.gene048686.t1 | AT3G25030 | 39.496 | 119 | 58 | 7 | 3 | 116 | 7 | 116 | 2.05e-13 | 69.7 |
| MS.gene048686.t1 | AT3G25030 | 42.742 | 124 | 54 | 2 | 227 | 346 | 140 | 250 | 6.77e-25 | 101 |
| MS.gene048686.t1 | AT3G25030 | 39.496 | 119 | 58 | 7 | 3 | 116 | 7 | 116 | 2.05e-13 | 69.7 |
| MS.gene048686.t1 | AT3G25030 | 42.742 | 124 | 54 | 2 | 227 | 346 | 140 | 250 | 6.77e-25 | 101 |
| MS.gene048686.t1 | AT3G25030 | 39.496 | 119 | 58 | 7 | 3 | 116 | 7 | 116 | 2.05e-13 | 69.7 |
| MS.gene048686.t1 | AT4G13100 | 45.299 | 117 | 47 | 4 | 237 | 346 | 150 | 256 | 4.45e-23 | 97.1 |
| MS.gene048686.t1 | AT4G13100 | 35.897 | 117 | 66 | 5 | 3 | 116 | 4 | 114 | 3.00e-12 | 66.2 |
| MS.gene048686.t1 | AT4G13100 | 45.299 | 117 | 44 | 4 | 237 | 346 | 153 | 256 | 4.68e-23 | 97.1 |
| MS.gene048686.t1 | AT4G13100 | 35.897 | 117 | 66 | 5 | 3 | 116 | 7 | 117 | 3.33e-12 | 66.2 |
| MS.gene048686.t1 | AT4G13100 | 45.299 | 117 | 44 | 4 | 237 | 346 | 153 | 256 | 4.68e-23 | 97.1 |
| MS.gene048686.t1 | AT4G13100 | 35.897 | 117 | 66 | 5 | 3 | 116 | 7 | 117 | 3.33e-12 | 66.2 |
| MS.gene048686.t1 | AT4G13100 | 45.299 | 117 | 47 | 4 | 237 | 346 | 153 | 259 | 4.91e-23 | 97.1 |
| MS.gene048686.t1 | AT4G13100 | 35.897 | 117 | 66 | 5 | 3 | 116 | 7 | 117 | 3.23e-12 | 66.2 |
| MS.gene048686.t1 | AT4G13100 | 45.299 | 117 | 47 | 4 | 237 | 346 | 153 | 259 | 4.91e-23 | 97.1 |
| MS.gene048686.t1 | AT4G13100 | 35.897 | 117 | 66 | 5 | 3 | 116 | 7 | 117 | 3.23e-12 | 66.2 |
| MS.gene048686.t1 | AT4G13100 | 45.299 | 117 | 47 | 4 | 237 | 346 | 153 | 259 | 4.91e-23 | 97.1 |
| MS.gene048686.t1 | AT4G13100 | 35.897 | 117 | 66 | 5 | 3 | 116 | 7 | 117 | 3.23e-12 | 66.2 |
| MS.gene048686.t1 | AT4G13100 | 45.299 | 117 | 47 | 4 | 237 | 346 | 153 | 259 | 4.91e-23 | 97.1 |
| MS.gene048686.t1 | AT4G13100 | 35.897 | 117 | 66 | 5 | 3 | 116 | 7 | 117 | 3.23e-12 | 66.2 |
| MS.gene048686.t1 | AT4G13100 | 45.299 | 117 | 44 | 4 | 237 | 346 | 162 | 265 | 7.99e-23 | 96.3 |
| MS.gene048686.t1 | AT4G22250 | 37.931 | 116 | 49 | 3 | 237 | 346 | 116 | 214 | 7.76e-16 | 75.9 |
| MS.gene048686.t1 | AT4G03965 | 34.259 | 108 | 62 | 2 | 239 | 346 | 111 | 209 | 1.47e-14 | 72.0 |
| MS.gene048686.t1 | AT1G62370 | 30.719 | 153 | 75 | 5 | 194 | 346 | 83 | 204 | 2.00e-13 | 68.9 |
| MS.gene048686.t1 | AT4G13100 | 35.135 | 111 | 64 | 4 | 8 | 116 | 13 | 117 | 1.89e-12 | 67.0 |
Find 82 sgRNAs with CRISPR-Local
Find 108 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCTTCTGCTGTTTGGATTT+TGG | 0.125473 | 3.2:-60712351 | None:intergenic |
| TAGCCGAAGCTTGTCTTTAA+AGG | 0.159939 | 3.2:-60712269 | None:intergenic |
| GAGCTCCCACGAGTGAATTT+TGG | 0.247907 | 3.2:-60712493 | None:intergenic |
| GATGTGTTCAAGGGAGCTTC+TGG | 0.299919 | 3.2:+60712996 | MS.gene048686:CDS |
| TGTGAAAAGCTTCTGCTGTT+TGG | 0.327474 | 3.2:-60712358 | None:intergenic |
| ATGTCGTTGATGGATTTGTT+AGG | 0.340148 | 3.2:+60712784 | MS.gene048686:CDS |
| GATAATGCCCTCCCCGTCTC+TGG | 0.395714 | 3.2:-60712685 | None:intergenic |
| GGGGAGACTGATAGAGAGAT+GGG | 0.409616 | 3.2:+60712805 | MS.gene048686:CDS |
| GCGGAGGCTGAGGCTGCAAC+AGG | 0.410299 | 3.2:+60712751 | MS.gene048686:CDS |
| AGAAGCTGCAGCGGAGGCTG+AGG | 0.420492 | 3.2:+60712741 | MS.gene048686:CDS |
| TGTCGTTGATGGATTTGTTA+GGG | 0.426572 | 3.2:+60712785 | MS.gene048686:CDS |
| ACCTCCGACGATGTCGTTGA+TGG | 0.428506 | 3.2:+60712774 | MS.gene048686:CDS |
| TTTGAATATGGAAGGTCATC+GGG | 0.444490 | 3.2:+60711726 | None:intergenic |
| TGGATAGGGATGTCTGATGT+TGG | 0.451282 | 3.2:-60712331 | None:intergenic |
| AAGCCTTTAAAGACAAGCTT+CGG | 0.451547 | 3.2:+60712266 | MS.gene048686:CDS |
| TGGATCCGACGACACACTAC+TGG | 0.451753 | 3.2:-60712590 | None:intergenic |
| AGCGGCAGAAGCTGCAGCGG+AGG | 0.453049 | 3.2:+60712735 | MS.gene048686:CDS |
| AGAGCTTGGCGGTGTAGAGC+CGG | 0.453417 | 3.2:-60711845 | None:intergenic |
| TATTTGCATGGTGAAGCATA+AGG | 0.455029 | 3.2:+60712936 | MS.gene048686:CDS |
| CGTCTTTGATGATGTCTATG+AGG | 0.458675 | 3.2:-60711903 | None:intergenic |
| AGCAGTGGCGGCACAAGAAG+CGG | 0.461146 | 3.2:+60712717 | MS.gene048686:CDS |
| GGATGCTTGGTATCATCGTC+TGG | 0.461468 | 3.2:-60712664 | None:intergenic |
| GAAGCATAAGGGCACTGCTT+TGG | 0.462618 | 3.2:+60712948 | MS.gene048686:CDS |
| CCTCCCCGTCTCTGGATGCT+TGG | 0.465184 | 3.2:-60712677 | None:intergenic |
| AGGGATGTCTGATGTTGGAA+TGG | 0.468079 | 3.2:-60712326 | None:intergenic |
| TGCTTTGGCGTTGTAGAGCT+TGG | 0.469785 | 3.2:-60711859 | None:intergenic |
| AGGGGAGACTGATAGAGAGA+TGG | 0.472745 | 3.2:+60712804 | MS.gene048686:CDS |
| TCGTCGGATCCATTCCGAAA+AGG | 0.487048 | 3.2:+60712601 | MS.gene048686:CDS |
| CGTCGGATCCATTCCGAAAA+GGG | 0.487282 | 3.2:+60712602 | MS.gene048686:CDS |
| ATTTGCATGGTGAAGCATAA+GGG | 0.490601 | 3.2:+60712937 | MS.gene048686:CDS |
| TGTCTGAGTCGTGATGAGTT+TGG | 0.492254 | 3.2:-60712408 | None:intergenic |
| AAGGGAGCTTCTGGTTGCTA+AGG | 0.496586 | 3.2:+60713005 | MS.gene048686:CDS |
| GATACCAAGCATCCAGAGAC+GGG | 0.496822 | 3.2:+60712673 | MS.gene048686:CDS |
| AGAAGCGGCAGAAGCTGCAG+CGG | 0.497737 | 3.2:+60712732 | MS.gene048686:CDS |
| GAGCTTGGCGGTGTAGAGCC+GGG | 0.499580 | 3.2:-60711844 | None:intergenic |
| TGGCCTGCTAGCTGGAGCAT+GGG | 0.500180 | 3.2:-60712473 | None:intergenic |
| GACTGATAGAGAGATGGGGT+TGG | 0.500325 | 3.2:+60712810 | MS.gene048686:CDS |
| AATCCCATGCTCCAGCTAGC+AGG | 0.507491 | 3.2:+60712470 | MS.gene048686:CDS |
| GATAGAGAGATGGGGTTGGA+AGG | 0.508067 | 3.2:+60712814 | MS.gene048686:CDS |
| TAAAGCGTGCTGGCTCTGCT+TGG | 0.510415 | 3.2:+60712290 | MS.gene048686:CDS |
| AGATGGGGTTGGAAGGGTCA+AGG | 0.511672 | 3.2:+60712821 | MS.gene048686:CDS |
| GGGATGTCTGATGTTGGAAT+GGG | 0.514310 | 3.2:-60712325 | None:intergenic |
| TTGGCCTGCTAGCTGGAGCA+TGG | 0.514758 | 3.2:-60712474 | None:intergenic |
| GAAGGTGAAGATGATGAAGA+TGG | 0.517231 | 3.2:+60712886 | MS.gene048686:CDS |
| AAGCTTCGGCTAAAGCGTGC+TGG | 0.527008 | 3.2:+60712280 | MS.gene048686:CDS |
| AGGGAGCTTCTGGTTGCTAA+GGG | 0.527571 | 3.2:+60713006 | MS.gene048686:CDS |
| ATACTAGTGGAGGAAATCTC+CGG | 0.536362 | 3.2:+60712545 | MS.gene048686:CDS |
| AGCAAGCGAGAGAAGCTAGC+GGG | 0.542475 | 3.2:+60711784 | MS.gene048686:CDS |
| ATGGATCGAGGTCATCTACT+TGG | 0.544070 | 3.2:-60712441 | None:intergenic |
| GTCTTTGATGATGTCTATGA+GGG | 0.544217 | 3.2:-60711902 | None:intergenic |
| GGAGCATGGGATTCATCTGA+TGG | 0.544263 | 3.2:-60712460 | None:intergenic |
| ACACACTTGTTCTATTTGCA+TGG | 0.550618 | 3.2:+60712924 | MS.gene048686:CDS |
| AAGGTGAAGATGATGAAGAT+GGG | 0.554506 | 3.2:+60712887 | MS.gene048686:CDS |
| TCGAGACAGCTTCGACGATG+AGG | 0.576310 | 3.2:+60712639 | MS.gene048686:CDS |
| AAAACGAAATTATTACAAAG+TGG | 0.576401 | 3.2:-60713036 | None:intergenic |
| TTTGGCGTTGTAGAGCTTGG+CGG | 0.578554 | 3.2:-60711856 | None:intergenic |
| TGAAGATGGGGAAAGTGCAT+TGG | 0.583542 | 3.2:+60712900 | MS.gene048686:CDS |
| ATAGAGAGATGGGGTTGGAA+GGG | 0.584366 | 3.2:+60712815 | MS.gene048686:CDS |
| AGCAGGCCAAAATTCACTCG+TGG | 0.590104 | 3.2:+60712487 | MS.gene048686:CDS |
| GATTCCTCTGAGAATACTAG+TGG | 0.594699 | 3.2:+60712532 | MS.gene048686:CDS |
| AAGGTATATATTAAGTGATG+AGG | 0.596739 | 3.2:+60712840 | MS.gene048686:CDS |
| TCCTCTGAGAATACTAGTGG+AGG | 0.597257 | 3.2:+60712535 | MS.gene048686:CDS |
| GAATTCTTGCGTGATAGTTG+TGG | 0.598461 | 3.2:-60712568 | None:intergenic |
| TGATACCAAGCATCCAGAGA+CGG | 0.598650 | 3.2:+60712672 | MS.gene048686:CDS |
| GAATTCCAGTAGTGTGTCGT+CGG | 0.603076 | 3.2:+60712585 | MS.gene048686:CDS |
| TCTTGCGTGATAGTTGTGGC+CGG | 0.605024 | 3.2:-60712564 | None:intergenic |
| TCCATCAACGACATCGTCGG+AGG | 0.611948 | 3.2:-60712775 | None:intergenic |
| GCAGGCCAAAATTCACTCGT+GGG | 0.618628 | 3.2:+60712488 | MS.gene048686:CDS |
| AAATCCATCAACGACATCGT+CGG | 0.618750 | 3.2:-60712778 | None:intergenic |
| GTCGTTGATGGATTTGTTAG+GGG | 0.618908 | 3.2:+60712786 | MS.gene048686:CDS |
| ATCTGCGAGAGAAGCAGTGG+CGG | 0.621972 | 3.2:+60712705 | MS.gene048686:CDS |
| ATTATCTGCGAGAGAAGCAG+TGG | 0.640834 | 3.2:+60712702 | MS.gene048686:CDS |
| TTATGAGGAAATGTCAGCTG+CGG | 0.647602 | 3.2:+60711759 | MS.gene048686:CDS |
| GGGAGACTGATAGAGAGATG+GGG | 0.649131 | 3.2:+60712806 | MS.gene048686:CDS |
| CAAGCATCCAGAGACGGGGA+GGG | 0.651075 | 3.2:+60712678 | MS.gene048686:CDS |
| TCCTCCACTAGTATTCTCAG+AGG | 0.651316 | 3.2:-60712536 | None:intergenic |
| CCAAGCATCCAGAGACGGGG+AGG | 0.656073 | 3.2:+60712677 | MS.gene048686:CDS |
| AGGTGAAGATGATGAAGATG+GGG | 0.657673 | 3.2:+60712888 | MS.gene048686:CDS |
| TTAGCGAATCAACAAAGACC+CGG | 0.663952 | 3.2:+60711826 | MS.gene048686:CDS |
| GGGATTCATCTGATGGATCG+AGG | 0.669034 | 3.2:-60712453 | None:intergenic |
| GAGCAAGCGAGAGAAGCTAG+CGG | 0.703074 | 3.2:+60711783 | MS.gene048686:CDS |
| ATACCAAGCATCCAGAGACG+GGG | 0.703842 | 3.2:+60712674 | MS.gene048686:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTGATCAATTTTATTTTA+TGG | + | chr3.2:60712156-60712175 | MS.gene048686:intron | 10.0% |
| !! | AAAACGAAATTATTACAAAG+TGG | - | chr3.2:60713039-60713058 | None:intergenic | 20.0% |
| !! | GACATATATATAAAAAGAAG+TGG | + | chr3.2:60711992-60712011 | MS.gene048686:intron | 20.0% |
| ! | AAGGTATATATTAAGTGATG+AGG | + | chr3.2:60712840-60712859 | MS.gene048686:CDS | 25.0% |
| ! | AATTAGTTAGTTACTCTACA+AGG | - | chr3.2:60712052-60712071 | None:intergenic | 25.0% |
| ! | ATTAGTTAGTTACTCTACAA+GGG | - | chr3.2:60712051-60712070 | None:intergenic | 25.0% |
| !! | TTTTCTGATGAAGATTATGA+AGG | + | chr3.2:60712868-60712887 | MS.gene048686:CDS | 25.0% |
| AACACATCCTACAAAAACTA+TGG | - | chr3.2:60712984-60713003 | None:intergenic | 30.0% | |
| TTCATTGATATGGAAGATCT+TGG | + | chr3.2:60712242-60712261 | MS.gene048686:intron | 30.0% | |
| ! | CTGCTTCATTTTCATTGATA+TGG | + | chr3.2:60712232-60712251 | MS.gene048686:intron | 30.0% |
| ! | TTTTTGTAGGATGTGTTCAA+GGG | + | chr3.2:60712987-60713006 | MS.gene048686:CDS | 30.0% |
| AAACCAACAAAAAAGATCGC+AGG | + | chr3.2:60711929-60711948 | MS.gene048686:CDS | 35.0% | |
| AAGGTGAAGATGATGAAGAT+GGG | + | chr3.2:60712887-60712906 | MS.gene048686:CDS | 35.0% | |
| ACACACTTGTTCTATTTGCA+TGG | + | chr3.2:60712924-60712943 | MS.gene048686:CDS | 35.0% | |
| ATTTGCATGGTGAAGCATAA+GGG | + | chr3.2:60712937-60712956 | MS.gene048686:CDS | 35.0% | |
| TATTTGCATGGTGAAGCATA+AGG | + | chr3.2:60712936-60712955 | MS.gene048686:CDS | 35.0% | |
| ! | AAGCCTTTAAAGACAAGCTT+CGG | + | chr3.2:60712266-60712285 | MS.gene048686:CDS | 35.0% |
| ! | AGCAGAAGCTTTTCACAATT+CGG | + | chr3.2:60712364-60712383 | MS.gene048686:CDS | 35.0% |
| ! | CTTGTAGCCATAGTTTTTGT+AGG | + | chr3.2:60712974-60712993 | MS.gene048686:CDS | 35.0% |
| ! | GGAAAACCACTTCTTTTTAG+AGG | - | chr3.2:60712030-60712049 | None:intergenic | 35.0% |
| ! | GTTTTTGTAGGATGTGTTCA+AGG | + | chr3.2:60712986-60713005 | MS.gene048686:CDS | 35.0% |
| ! | TCGGGAAAGAACATTTTATG+AGG | + | chr3.2:60711744-60711763 | MS.gene048686:CDS | 35.0% |
| ! | TTCCTTCCTCTAAAAAGAAG+TGG | + | chr3.2:60712021-60712040 | MS.gene048686:intron | 35.0% |
| !! | AACCACTTCTTTTTAGAGGA+AGG | - | chr3.2:60712026-60712045 | None:intergenic | 35.0% |
| !! | ATGTCGTTGATGGATTTGTT+AGG | + | chr3.2:60712784-60712803 | MS.gene048686:CDS | 35.0% |
| !! | GTCTTTGATGATGTCTATGA+GGG | - | chr3.2:60711905-60711924 | None:intergenic | 35.0% |
| !! | TGCTGTTTGGATTTTGGATA+GGG | - | chr3.2:60712348-60712367 | None:intergenic | 35.0% |
| !! | TGTCGTTGATGGATTTGTTA+GGG | + | chr3.2:60712785-60712804 | MS.gene048686:CDS | 35.0% |
| !!! | TTACCTGCGATCTTTTTTGT+TGG | - | chr3.2:60711935-60711954 | None:intergenic | 35.0% |
| AAATCCATCAACGACATCGT+CGG | - | chr3.2:60712781-60712800 | None:intergenic | 40.0% | |
| AGGTGAAGATGATGAAGATG+GGG | + | chr3.2:60712888-60712907 | MS.gene048686:CDS | 40.0% | |
| ATACTAGTGGAGGAAATCTC+CGG | + | chr3.2:60712545-60712564 | MS.gene048686:CDS | 40.0% | |
| GAAGGTGAAGATGATGAAGA+TGG | + | chr3.2:60712886-60712905 | MS.gene048686:CDS | 40.0% | |
| GAATTCTTGCGTGATAGTTG+TGG | - | chr3.2:60712571-60712590 | None:intergenic | 40.0% | |
| TAGCCGAAGCTTGTCTTTAA+AGG | - | chr3.2:60712272-60712291 | None:intergenic | 40.0% | |
| TGTGAAAAGCTTCTGCTGTT+TGG | - | chr3.2:60712361-60712380 | None:intergenic | 40.0% | |
| TTAGCGAATCAACAAAGACC+CGG | + | chr3.2:60711826-60711845 | MS.gene048686:CDS | 40.0% | |
| TTATGAGGAAATGTCAGCTG+CGG | + | chr3.2:60711759-60711778 | MS.gene048686:CDS | 40.0% | |
| ! | ATGAGGGTTCGACTTTTAGA+GGG | - | chr3.2:60711889-60711908 | None:intergenic | 40.0% |
| ! | GATTCCTCTGAGAATACTAG+TGG | + | chr3.2:60712532-60712551 | MS.gene048686:CDS | 40.0% |
| ! | TATGAGGGTTCGACTTTTAG+AGG | - | chr3.2:60711890-60711909 | None:intergenic | 40.0% |
| !! | AGCTTCTGCTGTTTGGATTT+TGG | - | chr3.2:60712354-60712373 | None:intergenic | 40.0% |
| !! | CGTCTTTGATGATGTCTATG+AGG | - | chr3.2:60711906-60711925 | None:intergenic | 40.0% |
| !! | CTGCTGTTTGGATTTTGGAT+AGG | - | chr3.2:60712349-60712368 | None:intergenic | 40.0% |
| !! | GTCGTTGATGGATTTGTTAG+GGG | + | chr3.2:60712786-60712805 | MS.gene048686:CDS | 40.0% |
| AGGGATGTCTGATGTTGGAA+TGG | - | chr3.2:60712329-60712348 | None:intergenic | 45.0% | |
| ATAGAGAGATGGGGTTGGAA+GGG | + | chr3.2:60712815-60712834 | MS.gene048686:CDS | 45.0% | |
| ATGGATCGAGGTCATCTACT+TGG | - | chr3.2:60712444-60712463 | None:intergenic | 45.0% | |
| ATTATCTGCGAGAGAAGCAG+TGG | + | chr3.2:60712702-60712721 | MS.gene048686:CDS | 45.0% | |
| GAATTCCAGTAGTGTGTCGT+CGG | + | chr3.2:60712585-60712604 | MS.gene048686:CDS | 45.0% | |
| GGGATGTCTGATGTTGGAAT+GGG | - | chr3.2:60712328-60712347 | None:intergenic | 45.0% | |
| TCCTCCACTAGTATTCTCAG+AGG | - | chr3.2:60712539-60712558 | None:intergenic | 45.0% | |
| TGATACCAAGCATCCAGAGA+CGG | + | chr3.2:60712672-60712691 | MS.gene048686:CDS | 45.0% | |
| TGGATAGGGATGTCTGATGT+TGG | - | chr3.2:60712334-60712353 | None:intergenic | 45.0% | |
| TGTCTGAGTCGTGATGAGTT+TGG | - | chr3.2:60712411-60712430 | None:intergenic | 45.0% | |
| ! | AAGTCACTACACGCCCTTTT+CGG | - | chr3.2:60712618-60712637 | None:intergenic | 45.0% |
| ! | TCCTCTGAGAATACTAGTGG+AGG | + | chr3.2:60712535-60712554 | MS.gene048686:CDS | 45.0% |
| ! | TGAAGATGGGGAAAGTGCAT+TGG | + | chr3.2:60712900-60712919 | MS.gene048686:CDS | 45.0% |
| !! | CTTTTAGAGGGTGGTTGCTT+TGG | - | chr3.2:60711877-60711896 | None:intergenic | 45.0% |
| AGCAGGCCAAAATTCACTCG+TGG | + | chr3.2:60712487-60712506 | MS.gene048686:CDS | 50.0% | |
| AGGGGAGACTGATAGAGAGA+TGG | + | chr3.2:60712804-60712823 | MS.gene048686:CDS | 50.0% | |
| ATACCAAGCATCCAGAGACG+GGG | + | chr3.2:60712674-60712693 | MS.gene048686:CDS | 50.0% | |
| CGTCGGATCCATTCCGAAAA+GGG | + | chr3.2:60712602-60712621 | MS.gene048686:CDS | 50.0% | |
| GACTGATAGAGAGATGGGGT+TGG | + | chr3.2:60712810-60712829 | MS.gene048686:CDS | 50.0% | |
| GATACCAAGCATCCAGAGAC+GGG | + | chr3.2:60712673-60712692 | MS.gene048686:CDS | 50.0% | |
| GATAGAGAGATGGGGTTGGA+AGG | + | chr3.2:60712814-60712833 | MS.gene048686:CDS | 50.0% | |
| GATGTGTTCAAGGGAGCTTC+TGG | + | chr3.2:60712996-60713015 | MS.gene048686:CDS | 50.0% | |
| GCAGGCCAAAATTCACTCGT+GGG | + | chr3.2:60712488-60712507 | MS.gene048686:CDS | 50.0% | |
| GGAGCATGGGATTCATCTGA+TGG | - | chr3.2:60712463-60712482 | None:intergenic | 50.0% | |
| GGATGCTTGGTATCATCGTC+TGG | - | chr3.2:60712667-60712686 | None:intergenic | 50.0% | |
| GGGAGACTGATAGAGAGATG+GGG | + | chr3.2:60712806-60712825 | MS.gene048686:CDS | 50.0% | |
| GGGGAGACTGATAGAGAGAT+GGG | + | chr3.2:60712805-60712824 | MS.gene048686:CDS | 50.0% | |
| TCGTCGGATCCATTCCGAAA+AGG | + | chr3.2:60712601-60712620 | MS.gene048686:CDS | 50.0% | |
| TCTTGCGTGATAGTTGTGGC+CGG | - | chr3.2:60712567-60712586 | None:intergenic | 50.0% | |
| TGCTTTGGCGTTGTAGAGCT+TGG | - | chr3.2:60711862-60711881 | None:intergenic | 50.0% | |
| TTTGGCGTTGTAGAGCTTGG+CGG | - | chr3.2:60711859-60711878 | None:intergenic | 50.0% | |
| ! | AAGGGAGCTTCTGGTTGCTA+AGG | + | chr3.2:60713005-60713024 | MS.gene048686:CDS | 50.0% |
| ! | ACTACACGCCCTTTTCGGAA+TGG | - | chr3.2:60712613-60712632 | None:intergenic | 50.0% |
| ! | AGGGAGCTTCTGGTTGCTAA+GGG | + | chr3.2:60713006-60713025 | MS.gene048686:CDS | 50.0% |
| ! | GAGCTCCCACGAGTGAATTT+TGG | - | chr3.2:60712496-60712515 | None:intergenic | 50.0% |
| ! | GGGATTCATCTGATGGATCG+AGG | - | chr3.2:60712456-60712475 | None:intergenic | 50.0% |
| !! | AGGGTTCGACTTTTAGAGGG+TGG | - | chr3.2:60711886-60711905 | None:intergenic | 50.0% |
| !! | GAAGCATAAGGGCACTGCTT+TGG | + | chr3.2:60712948-60712967 | MS.gene048686:CDS | 50.0% |
| !! | GTGAATTTTGGCCTGCTAGC+TGG | - | chr3.2:60712484-60712503 | None:intergenic | 50.0% |
| AAGCTTCGGCTAAAGCGTGC+TGG | + | chr3.2:60712280-60712299 | MS.gene048686:CDS | 55.0% | |
| AATCCCATGCTCCAGCTAGC+AGG | + | chr3.2:60712470-60712489 | MS.gene048686:CDS | 55.0% | |
| ACCTCCGACGATGTCGTTGA+TGG | + | chr3.2:60712774-60712793 | MS.gene048686:CDS | 55.0% | |
| AGATGGGGTTGGAAGGGTCA+AGG | + | chr3.2:60712821-60712840 | MS.gene048686:CDS | 55.0% | |
| AGCAAGCGAGAGAAGCTAGC+GGG | + | chr3.2:60711784-60711803 | MS.gene048686:CDS | 55.0% | |
| ATCTGCGAGAGAAGCAGTGG+CGG | + | chr3.2:60712705-60712724 | MS.gene048686:CDS | 55.0% | |
| GAGCAAGCGAGAGAAGCTAG+CGG | + | chr3.2:60711783-60711802 | MS.gene048686:CDS | 55.0% | |
| TCCATCAACGACATCGTCGG+AGG | - | chr3.2:60712778-60712797 | None:intergenic | 55.0% | |
| TCGAGACAGCTTCGACGATG+AGG | + | chr3.2:60712639-60712658 | MS.gene048686:CDS | 55.0% | |
| TGGATCCGACGACACACTAC+TGG | - | chr3.2:60712593-60712612 | None:intergenic | 55.0% | |
| !! | TAAAGCGTGCTGGCTCTGCT+TGG | + | chr3.2:60712290-60712309 | MS.gene048686:CDS | 55.0% |
| AGAAGCGGCAGAAGCTGCAG+CGG | + | chr3.2:60712732-60712751 | MS.gene048686:CDS | 60.0% | |
| AGAGCTTGGCGGTGTAGAGC+CGG | - | chr3.2:60711848-60711867 | None:intergenic | 60.0% | |
| AGCAGTGGCGGCACAAGAAG+CGG | + | chr3.2:60712717-60712736 | MS.gene048686:CDS | 60.0% | |
| CAAGCATCCAGAGACGGGGA+GGG | + | chr3.2:60712678-60712697 | MS.gene048686:CDS | 60.0% | |
| GATAATGCCCTCCCCGTCTC+TGG | - | chr3.2:60712688-60712707 | None:intergenic | 60.0% | |
| TGGCCTGCTAGCTGGAGCAT+GGG | - | chr3.2:60712476-60712495 | None:intergenic | 60.0% | |
| TTGGCCTGCTAGCTGGAGCA+TGG | - | chr3.2:60712477-60712496 | None:intergenic | 60.0% | |
| AGAAGCTGCAGCGGAGGCTG+AGG | + | chr3.2:60712741-60712760 | MS.gene048686:CDS | 65.0% | |
| CCAAGCATCCAGAGACGGGG+AGG | + | chr3.2:60712677-60712696 | MS.gene048686:CDS | 65.0% | |
| CCTCCCCGTCTCTGGATGCT+TGG | - | chr3.2:60712680-60712699 | None:intergenic | 65.0% | |
| GAGCTTGGCGGTGTAGAGCC+GGG | - | chr3.2:60711847-60711866 | None:intergenic | 65.0% | |
| AGCGGCAGAAGCTGCAGCGG+AGG | + | chr3.2:60712735-60712754 | MS.gene048686:CDS | 70.0% | |
| GCGGAGGCTGAGGCTGCAAC+AGG | + | chr3.2:60712751-60712770 | MS.gene048686:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 60711733 | 60713080 | 60711733 | ID=MS.gene048686 |
| chr3.2 | mRNA | 60711733 | 60713080 | 60711733 | ID=MS.gene048686.t1;Parent=MS.gene048686 |
| chr3.2 | exon | 60711733 | 60711950 | 60711733 | ID=MS.gene048686.t1.exon1;Parent=MS.gene048686.t1 |
| chr3.2 | CDS | 60711733 | 60711950 | 60711733 | ID=cds.MS.gene048686.t1;Parent=MS.gene048686.t1 |
| chr3.2 | exon | 60712258 | 60713080 | 60712258 | ID=MS.gene048686.t1.exon2;Parent=MS.gene048686.t1 |
| chr3.2 | CDS | 60712258 | 60713080 | 60712258 | ID=cds.MS.gene048686.t1;Parent=MS.gene048686.t1 |
| Gene Sequence |
| Protein sequence |
