Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048825.t1 | XP_024627736.1 | 98.1 | 953 | 18 | 0 | 1 | 953 | 27 | 979 | 0.00E+00 | 1885.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048825.t1 | Q8H0S9 | 82.7 | 888 | 148 | 2 | 67 | 953 | 1 | 883 | 0.0e+00 | 1503.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048825.t1 | A0A072TU77 | 97.7 | 953 | 18 | 1 | 1 | 953 | 27 | 975 | 0.0e+00 | 1871.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene048825 | MS.gene033983 | PPI |
| MS.gene048825 | MS.gene36285 | PPI |
| MS.gene048825 | MS.gene79543 | PPI |
| MS.gene048825 | MS.gene33357 | PPI |
| MS.gene048825 | MS.gene89100 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048825.t1 | MTR_8g098525 | 97.692 | 953 | 18 | 1 | 1 | 953 | 27 | 975 | 0.0 | 1935 |
| MS.gene048825.t1 | MTR_8g098545 | 72.274 | 321 | 38 | 6 | 417 | 734 | 120 | 392 | 1.84e-146 | 440 |
| MS.gene048825.t1 | MTR_8g098545 | 75.362 | 138 | 22 | 3 | 67 | 202 | 1 | 128 | 5.52e-56 | 199 |
| MS.gene048825.t1 | MTR_8g098535 | 86.029 | 136 | 19 | 0 | 793 | 928 | 1 | 136 | 8.63e-79 | 253 |
| MS.gene048825.t1 | MTR_3g104720 | 27.123 | 365 | 241 | 10 | 172 | 522 | 112 | 465 | 2.62e-24 | 110 |
| MS.gene048825.t1 | MTR_8g018790 | 25.654 | 382 | 247 | 12 | 163 | 524 | 105 | 469 | 1.93e-18 | 91.3 |
| MS.gene048825.t1 | MTR_8g018790 | 26.286 | 350 | 229 | 11 | 187 | 524 | 4 | 336 | 3.00e-18 | 90.5 |
| MS.gene048825.t1 | MTR_1g116230 | 22.689 | 357 | 219 | 10 | 187 | 515 | 127 | 454 | 5.30e-13 | 73.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048825.t1 | AT1G63770 | 80.316 | 950 | 177 | 5 | 8 | 953 | 32 | 975 | 0.0 | 1589 |
| MS.gene048825.t1 | AT1G63770 | 80.316 | 950 | 177 | 5 | 8 | 953 | 32 | 975 | 0.0 | 1589 |
| MS.gene048825.t1 | AT1G63770 | 79.314 | 962 | 177 | 6 | 8 | 953 | 32 | 987 | 0.0 | 1580 |
| MS.gene048825.t1 | AT1G63770 | 82.658 | 888 | 148 | 2 | 67 | 953 | 1 | 883 | 0.0 | 1549 |
| MS.gene048825.t1 | AT1G63770 | 81.556 | 900 | 148 | 3 | 67 | 953 | 1 | 895 | 0.0 | 1540 |
| MS.gene048825.t1 | AT1G63770 | 77.839 | 907 | 187 | 6 | 8 | 906 | 32 | 932 | 0.0 | 1466 |
| MS.gene048825.t1 | AT1G63770 | 77.341 | 865 | 182 | 6 | 8 | 864 | 32 | 890 | 0.0 | 1382 |
| MS.gene048825.t1 | AT4G33090 | 25.978 | 358 | 244 | 9 | 172 | 517 | 112 | 460 | 2.64e-23 | 107 |
Find 214 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGGGAGGCTGGACAAATTT+TGG | 0.195193 | 4.3:+5809452 | MS.gene048825:CDS |
| TTCTGTTGGCATCGCCATTT+TGG | 0.229107 | 4.3:-5803716 | None:intergenic |
| GCTGCAATATTGGGAGTTAT+TGG | 0.238507 | 4.3:+5805714 | MS.gene048825:CDS |
| TTAGTTTCAGTTCATATAAA+TGG | 0.251370 | 4.3:+5804093 | MS.gene048825:CDS |
| TGCAGACTATGCTGCAATAT+TGG | 0.262232 | 4.3:+5805704 | MS.gene048825:CDS |
| AAAGAAAATGTATGTCCTTC+TGG | 0.295805 | 4.3:-5807471 | None:intergenic |
| GTATACTTTGCCATTATATC+AGG | 0.308903 | 4.3:-5804835 | None:intergenic |
| GAGGGGATTGGATTGTTAAA+TGG | 0.332826 | 4.3:-5804447 | None:intergenic |
| TAGGGTCTTTACAAGTCATC+TGG | 0.340933 | 4.3:+5804652 | MS.gene048825:intron |
| TGCCTTAGTCGCCGGGCAAC+TGG | 0.345341 | 4.3:+5805071 | MS.gene048825:CDS |
| GCGGCCACACTCTTACATTA+AGG | 0.345414 | 4.3:+5806558 | MS.gene048825:CDS |
| GGCTTCTCCCGAGGCTGCTT+CGG | 0.348162 | 4.3:+5805680 | MS.gene048825:CDS |
| GGGCAAACATTATGCTGTTT+GGG | 0.349381 | 4.3:+5805017 | MS.gene048825:CDS |
| ACAGGATCGGCCTGATATAA+TGG | 0.349393 | 4.3:+5804825 | MS.gene048825:intron |
| AACCCACCTTAGTGACTCTA+AGG | 0.351287 | 4.3:-5807791 | None:intergenic |
| GGCCTGTTCCATCTTTGTTA+AGG | 0.353116 | 4.3:+5809228 | MS.gene048825:CDS |
| TTATGCAGTATTTCCACAAT+TGG | 0.355828 | 4.3:+5805852 | MS.gene048825:intron |
| TTTGAACCCATCAACAAAAC+TGG | 0.362012 | 4.3:-5809538 | None:intergenic |
| GCCTGGTGAGGGAGAAATAA+TGG | 0.363785 | 4.3:+5809716 | MS.gene048825:CDS |
| GGGGCAAACATTATGCTGTT+TGG | 0.366471 | 4.3:+5805016 | MS.gene048825:CDS |
| ATAAATTACATATTAAAATC+TGG | 0.367342 | 4.3:-5805388 | None:intergenic |
| GAACCAATGGTTTATTATGT+TGG | 0.368205 | 4.3:-5809509 | None:intergenic |
| GCCTGTTCCATCTTTGTTAA+GGG | 0.374451 | 4.3:+5809229 | MS.gene048825:CDS |
| TATCCAGTATTGTTGTCTAA+TGG | 0.378189 | 4.3:+5804886 | MS.gene048825:CDS |
| GCAGACTATGCTGCAATATT+GGG | 0.380911 | 4.3:+5805705 | MS.gene048825:CDS |
| CAAGCAGTGTCTGACATTCC+TGG | 0.382633 | 4.3:+5810989 | MS.gene048825:CDS |
| TTTCCATTAGACAACAATAC+TGG | 0.386158 | 4.3:-5804889 | None:intergenic |
| GCAAGTTGAAGAATCCAAAA+TGG | 0.386732 | 4.3:+5803702 | MS.gene048825:CDS |
| GACACATTTACTACCCGTTC+AGG | 0.389755 | 4.3:+5805105 | MS.gene048825:CDS |
| ATGAGAGAGTACACTTTGTT+GGG | 0.391177 | 4.3:-5811067 | None:intergenic |
| CTCCAGTTGCCCGGCGACTA+AGG | 0.393921 | 4.3:-5805073 | None:intergenic |
| TCAAGCAAACCTACCGCAAT+AGG | 0.395712 | 4.3:-5807675 | None:intergenic |
| CGCACATTCTCAACATTACC+AGG | 0.399662 | 4.3:-5811007 | None:intergenic |
| TTTGATTATTTAGGAGTTTG+TGG | 0.401530 | 4.3:+5809677 | MS.gene048825:intron |
| TTTCAATTCCAAGCTTGTAT+TGG | 0.401637 | 4.3:+5805659 | MS.gene048825:CDS |
| CGAATGTACAAAACCTTGTT+GGG | 0.403390 | 4.3:+5807099 | MS.gene048825:CDS |
| AATGAGAGAGTACACTTTGT+TGG | 0.404151 | 4.3:-5811068 | None:intergenic |
| TCCACAATTGGACTGGCAAC+AGG | 0.404803 | 4.3:+5805864 | MS.gene048825:CDS |
| GAAGTGTTTACTTTGACAAC+AGG | 0.405411 | 4.3:-5807441 | None:intergenic |
| GATAAGTAACCTGTGGAAAC+TGG | 0.407462 | 4.3:-5806223 | None:intergenic |
| AGATCAGATTCAAGACGAAT+AGG | 0.408417 | 4.3:-5809263 | None:intergenic |
| GTTGAATTCATCAGAATCAT+TGG | 0.409891 | 4.3:-5809315 | None:intergenic |
| GTAGGTTTGCTTGATTCAAC+TGG | 0.416913 | 4.3:+5807684 | MS.gene048825:CDS |
| CTTTCCAGGTAGTGAACAAA+TGG | 0.420055 | 4.3:+5810957 | MS.gene048825:intron |
| GCCAACAGAAATATTCTTGA+AGG | 0.421916 | 4.3:+5803729 | MS.gene048825:CDS |
| GACCGAGCAGTTTGCAGCAT+TGG | 0.427494 | 4.3:+5810336 | MS.gene048825:CDS |
| CGAACAGTATGAACAGCATC+AGG | 0.428093 | 4.3:-5809759 | None:intergenic |
| ATCTGTTTGCCTTAGTCGCC+GGG | 0.436528 | 4.3:+5805064 | MS.gene048825:CDS |
| CAAGAGATCCCGCCAACTCC+AGG | 0.436675 | 4.3:+5807624 | MS.gene048825:CDS |
| TGGCCGCACTGGATGGGCCA+TGG | 0.437513 | 4.3:-5806542 | None:intergenic |
| ACTGTCTCAAAGTAGTAATC+AGG | 0.438474 | 4.3:-5803763 | None:intergenic |
| AACTCCAGGGCAGTCAGTTA+AGG | 0.443697 | 4.3:+5807638 | MS.gene048825:CDS |
| TTTCCTCTATTTACCACGAC+GGG | 0.443822 | 4.3:+5807721 | MS.gene048825:CDS |
| ATACTGTTCGGTCTTTCATC+AGG | 0.445412 | 4.3:+5809772 | MS.gene048825:CDS |
| GCTGTGTTTCCTCGCGTTGA+AGG | 0.448348 | 4.3:+5803939 | MS.gene048825:CDS |
| GTCTGCATCCGAAGCAGCCT+CGG | 0.449809 | 4.3:-5805688 | None:intergenic |
| GGACACCTTCCTTCCTGAAC+GGG | 0.451324 | 4.3:-5805118 | None:intergenic |
| AACAAAGTGTACTCTCTCAT+TGG | 0.451462 | 4.3:+5811070 | MS.gene048825:CDS |
| TGTATTGTTGCAGGCCCAGC+TGG | 0.451920 | 4.3:+5812039 | MS.gene048825:intron |
| ATTTACCACTAGGAGGGGAT+TGG | 0.453297 | 4.3:-5804459 | None:intergenic |
| CTGCAGGTGTCCAGATCCTA+AGG | 0.453974 | 4.3:-5805140 | None:intergenic |
| TCGAATGTACAAAACCTTGT+TGG | 0.454357 | 4.3:+5807098 | MS.gene048825:CDS |
| TATACTATCTGACTCAAGTC+TGG | 0.458119 | 4.3:+5809563 | MS.gene048825:CDS |
| TATAAATGGCAAGGCATTGA+AGG | 0.460112 | 4.3:+5804107 | MS.gene048825:CDS |
| GGGAGAAATAATGGACATAA+TGG | 0.462842 | 4.3:+5809725 | MS.gene048825:CDS |
| CCTGGTTGGACAGGGTGACT+TGG | 0.463142 | 4.3:+5804912 | MS.gene048825:CDS |
| GAGTAGGAAGCTAATTTGTT+CGG | 0.465821 | 4.3:+5803663 | MS.gene048825:CDS |
| GGAAGGTGTCCCTTAGGATC+TGG | 0.466228 | 4.3:+5805130 | MS.gene048825:CDS |
| GTTGAAAATAATAGGAGCTC+AGG | 0.467233 | 4.3:+5809962 | MS.gene048825:CDS |
| CAAGTGGCAGAATGATTACT+TGG | 0.468682 | 4.3:+5810417 | MS.gene048825:CDS |
| ACAGAAAGCATACTGTCTTA+AGG | 0.468717 | 4.3:-5809827 | None:intergenic |
| ATACATAGCATGTGCAGTCT+TGG | 0.471435 | 4.3:-5805172 | None:intergenic |
| CCGGAACAGAAGAATAAAAC+AGG | 0.473021 | 4.3:-5803525 | None:intergenic |
| ATGATTCTGATGAATTCAAC+CGG | 0.473559 | 4.3:+5809318 | MS.gene048825:CDS |
| TACATAGCATGTGCAGTCTT+GGG | 0.475653 | 4.3:-5805171 | None:intergenic |
| GGCCGCACTGGATGGGCCAT+GGG | 0.476301 | 4.3:-5806541 | None:intergenic |
| ACTGACTGCCCTGGAGTTGG+CGG | 0.479991 | 4.3:-5807633 | None:intergenic |
| TATGTAGGTTGCCTCAAGAA+TGG | 0.481939 | 4.3:+5811856 | MS.gene048825:intron |
| TAATGGAAACCTGGTTGGAC+AGG | 0.483118 | 4.3:+5804903 | MS.gene048825:CDS |
| CCCCTTAACAAAGATGGAAC+AGG | 0.483316 | 4.3:-5809230 | None:intergenic |
| GAGAAGATCATGTCTACTAA+TGG | 0.484516 | 4.3:+5812061 | MS.gene048825:CDS |
| GTCTTGGGTACGTCCTCTGC+AGG | 0.485166 | 4.3:-5805156 | None:intergenic |
| TAGACATGATCTTCTCCAGC+TGG | 0.485899 | 4.3:-5812054 | None:intergenic |
| TAAATTACATATTAAAATCT+GGG | 0.487279 | 4.3:-5805387 | None:intergenic |
| ATCTCTGCTCTCCAGTTGCC+CGG | 0.487926 | 4.3:-5805082 | None:intergenic |
| TTAACTGACTGCCCTGGAGT+TGG | 0.490776 | 4.3:-5807636 | None:intergenic |
| CAGATAACAAGGCTTCTTGA+AGG | 0.491235 | 4.3:-5805046 | None:intergenic |
| TATTTAGGAGTTTGTGGCAA+AGG | 0.491413 | 4.3:+5809683 | MS.gene048825:intron |
| CTGATGCTGTTCATACTGTT+CGG | 0.492246 | 4.3:+5809760 | MS.gene048825:CDS |
| CAGGAAGGAAGGTGTCCCTT+AGG | 0.492248 | 4.3:+5805124 | MS.gene048825:CDS |
| AATGTTCTTCAAAGCTCGTC+TGG | 0.495959 | 4.3:-5810014 | None:intergenic |
| AAAACCTTGTTGGGAAGTCA+AGG | 0.496990 | 4.3:+5807108 | MS.gene048825:CDS |
| TCCTTCAAGAATATTTCTGT+TGG | 0.497891 | 4.3:-5803730 | None:intergenic |
| GGATTGTAGTAGAGACTGAT+TGG | 0.498420 | 4.3:-5807770 | None:intergenic |
| CAACAATATTGAAGAGATCC+AGG | 0.499390 | 4.3:-5805360 | None:intergenic |
| TATCTGTTTGCCTTAGTCGC+CGG | 0.499741 | 4.3:+5805063 | MS.gene048825:CDS |
| TCCTTTGCATGGAAGTTCAC+AGG | 0.505508 | 4.3:-5811109 | None:intergenic |
| CTGTATCCCCTTAACAAAGA+TGG | 0.506334 | 4.3:-5809236 | None:intergenic |
| TCCATTATTTCTCCCTCACC+AGG | 0.507418 | 4.3:-5809717 | None:intergenic |
| ATGTAAGAGTGTGGCCGCAC+TGG | 0.508351 | 4.3:-5806553 | None:intergenic |
| CTTCCATGCAAAGGATGGAT+CGG | 0.509572 | 4.3:+5811117 | MS.gene048825:CDS |
| TTCCATGCAAAGGATGGATC+GGG | 0.511900 | 4.3:+5811118 | MS.gene048825:CDS |
| ATGGACAGGTACTCTCAAGC+TGG | 0.517263 | 4.3:+5807414 | MS.gene048825:intron |
| AAGAGTGTGGCCGCACTGGA+TGG | 0.517403 | 4.3:-5806549 | None:intergenic |
| AGCCCCGTCGTGGTAAATAG+AGG | 0.518125 | 4.3:-5807724 | None:intergenic |
| TTTCCAACATAATAAACCAT+TGG | 0.521326 | 4.3:+5809506 | MS.gene048825:CDS |
| GGCAATAACTCTGCCTGGTG+AGG | 0.521590 | 4.3:+5809704 | MS.gene048825:CDS |
| ATGTTTATTCCTATTGCGGT+AGG | 0.521964 | 4.3:+5807666 | MS.gene048825:CDS |
| GGCCAATGCTGCAAACTGCT+CGG | 0.527495 | 4.3:-5810338 | None:intergenic |
| ACCTGTTGCCAGTCCAATTG+TGG | 0.529552 | 4.3:-5805865 | None:intergenic |
| GCTTTGAAGAACATTGCTCT+TGG | 0.530232 | 4.3:+5810022 | MS.gene048825:CDS |
| TACAATCCTTAGAGTCACTA+AGG | 0.530410 | 4.3:+5807785 | MS.gene048825:CDS |
| CAGTATTTCCACAATTGGAC+TGG | 0.532172 | 4.3:+5805857 | MS.gene048825:intron |
| TTCAGTTCATATAAATGGCA+AGG | 0.532518 | 4.3:+5804098 | MS.gene048825:CDS |
| TCAGAGTGACATGTCGCGAC+TGG | 0.533480 | 4.3:+5805983 | MS.gene048825:intron |
| TTTCCAGGATGGAGGTCCCA+TGG | 0.533743 | 4.3:+5806525 | MS.gene048825:intron |
| GGTTGGACAGGGTGACTTGG+AGG | 0.534548 | 4.3:+5804915 | MS.gene048825:CDS |
| AAAGTTGATGCTCAGCTTGG+TGG | 0.534567 | 4.3:+5809479 | MS.gene048825:CDS |
| TGGTGTCAGCCTTCTCAAGA+TGG | 0.537630 | 4.3:+5811876 | MS.gene048825:CDS |
| TATCGTCTTCTCCTCTCCTA+AGG | 0.538747 | 4.3:-5803901 | None:intergenic |
| TGGTGAGTTCTTGATCCTCA+AGG | 0.541352 | 4.3:-5810276 | None:intergenic |
| CAGATGGACAACTTCTACAC+AGG | 0.541978 | 4.3:+5806689 | MS.gene048825:intron |
| CTCTGAAAGCAGCTATGAAG+TGG | 0.542197 | 4.3:+5805196 | MS.gene048825:CDS |
| AGCTTATCTTGCATCCCTTG+AGG | 0.542985 | 4.3:+5810261 | MS.gene048825:intron |
| TTTACCAGGGTTCTGAACTA+CGG | 0.545961 | 4.3:-5810362 | None:intergenic |
| TCTGCATCCGAAGCAGCCTC+GGG | 0.546429 | 4.3:-5805687 | None:intergenic |
| AAATGACTTAGATGGGAGGC+TGG | 0.546916 | 4.3:+5809441 | MS.gene048825:intron |
| CCTGTTCCATCTTTGTTAAG+GGG | 0.548268 | 4.3:+5809230 | MS.gene048825:CDS |
| AGATAACAAGGCTTCTTGAA+GGG | 0.548726 | 4.3:-5805045 | None:intergenic |
| AAAGTGTACTCTCTCATTGG+AGG | 0.548892 | 4.3:+5811073 | MS.gene048825:CDS |
| GGTTCCTTAACTGACTGCCC+TGG | 0.549924 | 4.3:-5807642 | None:intergenic |
| CTGACTGCCCTGGAGTTGGC+GGG | 0.551592 | 4.3:-5807632 | None:intergenic |
| GTATTCTTGAAGAGCAAGGT+TGG | 0.553049 | 4.3:-5810296 | None:intergenic |
| GGTGAGTTCTTGATCCTCAA+GGG | 0.553145 | 4.3:-5810275 | None:intergenic |
| GTGAACTTCCATGCAAAGGA+TGG | 0.554013 | 4.3:+5811112 | MS.gene048825:CDS |
| ATCATATTTACCACTAGGAG+GGG | 0.554277 | 4.3:-5804464 | None:intergenic |
| AGCCCGATCCATCCTTTGCA+TGG | 0.555367 | 4.3:-5811120 | None:intergenic |
| AGAGTGTGGCCGCACTGGAT+GGG | 0.555488 | 4.3:-5806548 | None:intergenic |
| CCAAGTCACCCTGTCCAACC+AGG | 0.555742 | 4.3:-5804912 | None:intergenic |
| GCAAAGGCAATAACTCTGCC+TGG | 0.557564 | 4.3:+5809699 | MS.gene048825:CDS |
| GGATTGCGCAAGTCAAATGC+TGG | 0.558226 | 4.3:-5811046 | None:intergenic |
| GGGAGAAGCCAATACAAGCT+TGG | 0.559637 | 4.3:-5805667 | None:intergenic |
| TTTGCTTGATTCAACTGGCA+AGG | 0.560732 | 4.3:+5807689 | MS.gene048825:CDS |
| ACCCATGTTTATTCCTATTG+CGG | 0.563888 | 4.3:+5807662 | MS.gene048825:CDS |
| GACCTTCCTTCAGACTAAGC+TGG | 0.564366 | 4.3:-5806008 | None:intergenic |
| GCTTGTATTGGCTTCTCCCG+AGG | 0.565225 | 4.3:+5805671 | MS.gene048825:CDS |
| TCAAGATCATATTTACCACT+AGG | 0.565494 | 4.3:-5804469 | None:intergenic |
| CTTTCCTCTATTTACCACGA+CGG | 0.566620 | 4.3:+5807720 | MS.gene048825:CDS |
| ACCTGTGAACTTCCATGCAA+AGG | 0.567689 | 4.3:+5811108 | MS.gene048825:CDS |
| TTTCAAACACATTCTCTGAA+AGG | 0.568528 | 4.3:-5812084 | None:intergenic |
| AAACTGGAATTCAGAACCAA+TGG | 0.568900 | 4.3:-5809522 | None:intergenic |
| TAGACATTTCCTTGCATCAG+AGG | 0.569312 | 4.3:+5803378 | MS.gene048825:CDS |
| TGTTTACTGATATCTTTGAG+AGG | 0.570587 | 4.3:+5809207 | MS.gene048825:CDS |
| TGTAATGGTCAGGGGCGCCA+TGG | 0.571835 | 4.3:+5805538 | MS.gene048825:intron |
| GCAGGAATTCTCATCTGACA+TGG | 0.573103 | 4.3:+5806151 | MS.gene048825:intron |
| ATTTGTATTCTTGAAGAGCA+AGG | 0.575176 | 4.3:-5810300 | None:intergenic |
| TACTACCCGTTCAGGAAGGA+AGG | 0.577098 | 4.3:+5805113 | MS.gene048825:CDS |
| GCAATAACTCTGCCTGGTGA+GGG | 0.577317 | 4.3:+5809705 | MS.gene048825:CDS |
| AGGGTCTTTACAAGTCATCT+GGG | 0.577817 | 4.3:+5804653 | MS.gene048825:intron |
| AGATCATATTTACCACTAGG+AGG | 0.580024 | 4.3:-5804466 | None:intergenic |
| CTGGTTCCAGCTTAGTCTGA+AGG | 0.581143 | 4.3:+5806002 | MS.gene048825:CDS |
| GATCATATTTACCACTAGGA+GGG | 0.585510 | 4.3:-5804465 | None:intergenic |
| TTGCTGACTTCTATGACAAG+TGG | 0.589939 | 4.3:+5810401 | MS.gene048825:CDS |
| TGTACTCAATGTGAGGCTGA+AGG | 0.591035 | 4.3:+5804682 | MS.gene048825:CDS |
| TGCATCATTTGCATCTCGCA+TGG | 0.592491 | 4.3:-5807305 | None:intergenic |
| AGACATGATCTTCTCCAGCT+GGG | 0.594464 | 4.3:-5812053 | None:intergenic |
| AGCCGCACTGTAAAGCGTGT+TGG | 0.594519 | 4.3:+5806176 | MS.gene048825:CDS |
| GTTCCGAAAACAATTAACAC+TGG | 0.594661 | 4.3:-5803332 | None:intergenic |
| TCGAAATTACCAGTTTCCAC+AGG | 0.596406 | 4.3:+5806214 | MS.gene048825:CDS |
| GATAACAAGGCTTCTTGAAG+GGG | 0.597176 | 4.3:-5805044 | None:intergenic |
| AAACCTTGTTGGGAAGTCAA+GGG | 0.597650 | 4.3:+5807109 | MS.gene048825:CDS |
| ACTTGACAAAATAAACCCTC+AGG | 0.598001 | 4.3:+5811171 | MS.gene048825:CDS |
| TCGTGGTAAATAGAGGAAAG+AGG | 0.602307 | 4.3:-5807717 | None:intergenic |
| AACACTTCTTATAATCCAGA+AGG | 0.604802 | 4.3:+5807456 | MS.gene048825:CDS |
| AAGAGATCCCGCCAACTCCA+GGG | 0.608268 | 4.3:+5807625 | MS.gene048825:CDS |
| TACCGCAATAGGAATAAACA+TGG | 0.611086 | 4.3:-5807664 | None:intergenic |
| GGGACACCTTCCTTCCTGAA+CGG | 0.612321 | 4.3:-5805119 | None:intergenic |
| AAAGTATACAGTTCGTATTG+AGG | 0.613721 | 4.3:+5804849 | MS.gene048825:CDS |
| ATAACGCTTCCATCTTGAGA+AGG | 0.617252 | 4.3:-5811885 | None:intergenic |
| TTGTCTAATGGAAACCTGGT+TGG | 0.618415 | 4.3:+5804898 | MS.gene048825:CDS |
| GAAGGCTGACACCATTCTTG+AGG | 0.618537 | 4.3:-5811867 | None:intergenic |
| ACGAAAGTTGATGCTCAGCT+TGG | 0.618899 | 4.3:+5809476 | MS.gene048825:CDS |
| ATTGTTGTCTAATGGAAACC+TGG | 0.624462 | 4.3:+5804894 | MS.gene048825:CDS |
| AATGGAAACCTGGTTGGACA+GGG | 0.624588 | 4.3:+5804904 | MS.gene048825:CDS |
| GAACCCTTGACTTCCCAACA+AGG | 0.625203 | 4.3:-5807112 | None:intergenic |
| GCCTCCGTAGTTCAGAACCC+TGG | 0.626424 | 4.3:+5810358 | MS.gene048825:CDS |
| TGCGCAAGTCAAATGCTGGA+TGG | 0.632908 | 4.3:-5811042 | None:intergenic |
| TGGACAGGTACTCTCAAGCT+GGG | 0.633936 | 4.3:+5807415 | MS.gene048825:intron |
| CATTTACTACCCGTTCAGGA+AGG | 0.637356 | 4.3:+5805109 | MS.gene048825:CDS |
| TCTGAAAGCAGCTATGAAGT+GGG | 0.641076 | 4.3:+5805197 | MS.gene048825:CDS |
| ACTAAGGCAAACAGATAACA+AGG | 0.643292 | 4.3:-5805057 | None:intergenic |
| CAAACATTATGCTGTTTGGG+AGG | 0.647350 | 4.3:+5805020 | MS.gene048825:CDS |
| AGAGGGTCAAGAAAGCGAGT+AGG | 0.648650 | 4.3:+5803647 | MS.gene048825:intron |
| GTTTAAATGACTTAGATGGG+AGG | 0.650532 | 4.3:+5809437 | MS.gene048825:intron |
| CACCAACACGCTTTACAGTG+CGG | 0.651504 | 4.3:-5806178 | None:intergenic |
| ATTGGGAGTTATTGGACACG+AGG | 0.651641 | 4.3:+5805722 | MS.gene048825:CDS |
| ACCAGGGTTCTGAACTACGG+AGG | 0.652025 | 4.3:-5810359 | None:intergenic |
| CAGGAATTCTCATCTGACAT+GGG | 0.652148 | 4.3:+5806152 | MS.gene048825:intron |
| TGTGTTTGATCATTCAAACA+TGG | 0.652923 | 4.3:+5809991 | MS.gene048825:CDS |
| TAGGATCTGGACACCTGCAG+AGG | 0.660936 | 4.3:+5805143 | MS.gene048825:CDS |
| CTAACCTTAATGTAAGAGTG+TGG | 0.664000 | 4.3:-5806562 | None:intergenic |
| GTCCCATGGCCCATCCAGTG+CGG | 0.666133 | 4.3:+5806539 | MS.gene048825:CDS |
| TCTTGTCCATCTAAAACTAG+CGG | 0.668026 | 4.3:-5804063 | None:intergenic |
| CAGATTGCAAAGCCCCGTCG+TGG | 0.672577 | 4.3:-5807734 | None:intergenic |
| TTCCAGCTTAGTCTGAAGGA+AGG | 0.673313 | 4.3:+5806006 | MS.gene048825:CDS |
| AAAGGGCTACCTTCAACGCG+AGG | 0.675346 | 4.3:-5803948 | None:intergenic |
| ACAATCCAATCCCCTCCTAG+TGG | 0.677730 | 4.3:+5804454 | MS.gene048825:CDS |
| GAATTTCTGTACTCAATGTG+AGG | 0.677788 | 4.3:+5804675 | MS.gene048825:CDS |
| CTGGTAATGTTGAGAATGTG+CGG | 0.687935 | 4.3:+5811008 | MS.gene048825:CDS |
| TTCCTCTATTTACCACGACG+GGG | 0.688128 | 4.3:+5807722 | MS.gene048825:CDS |
| TGTCCATCTAAAACTAGCGG+AGG | 0.690165 | 4.3:-5804060 | None:intergenic |
| TGCAGGTGTCCAGATCCTAA+GGG | 0.690368 | 4.3:-5805139 | None:intergenic |
| GAACAGTATGAACAGCATCA+GGG | 0.705784 | 4.3:-5809758 | None:intergenic |
| ACCGCAATAGGAATAAACAT+GGG | 0.742992 | 4.3:-5807663 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 5803319 | 5812132 | 5803319 | ID=MS.gene048825 |
| chr4.3 | mRNA | 5803319 | 5812132 | 5803319 | ID=MS.gene048825.t1;Parent=MS.gene048825 |
| chr4.3 | exon | 5803319 | 5803399 | 5803319 | ID=MS.gene048825.t1.exon1;Parent=MS.gene048825.t1 |
| chr4.3 | CDS | 5803319 | 5803399 | 5803319 | ID=cds.MS.gene048825.t1;Parent=MS.gene048825.t1 |
| chr4.3 | exon | 5803502 | 5803546 | 5803502 | ID=MS.gene048825.t1.exon2;Parent=MS.gene048825.t1 |
| chr4.3 | CDS | 5803502 | 5803546 | 5803502 | ID=cds.MS.gene048825.t1;Parent=MS.gene048825.t1 |
| chr4.3 | exon | 5803649 | 5803783 | 5803649 | ID=MS.gene048825.t1.exon3;Parent=MS.gene048825.t1 |
| chr4.3 | CDS | 5803649 | 5803783 | 5803649 | ID=cds.MS.gene048825.t1;Parent=MS.gene048825.t1 |
| chr4.3 | exon | 5803885 | 5803960 | 5803885 | ID=MS.gene048825.t1.exon4;Parent=MS.gene048825.t1 |
| chr4.3 | CDS | 5803885 | 5803960 | 5803885 | ID=cds.MS.gene048825.t1;Parent=MS.gene048825.t1 |
| chr4.3 | exon | 5804052 | 5804128 | 5804052 | ID=MS.gene048825.t1.exon5;Parent=MS.gene048825.t1 |
| chr4.3 | CDS | 5804052 | 5804128 | 5804052 | ID=cds.MS.gene048825.t1;Parent=MS.gene048825.t1 |
| chr4.3 | exon | 5804421 | 5804534 | 5804421 | ID=MS.gene048825.t1.exon6;Parent=MS.gene048825.t1 |
| chr4.3 | CDS | 5804421 | 5804534 | 5804421 | ID=cds.MS.gene048825.t1;Parent=MS.gene048825.t1 |
| chr4.3 | exon | 5804655 | 5804729 | 5804655 | ID=MS.gene048825.t1.exon7;Parent=MS.gene048825.t1 |
| chr4.3 | CDS | 5804655 | 5804729 | 5804655 | ID=cds.MS.gene048825.t1;Parent=MS.gene048825.t1 |
| chr4.3 | exon | 5804829 | 5804936 | 5804829 | ID=MS.gene048825.t1.exon8;Parent=MS.gene048825.t1 |
| chr4.3 | CDS | 5804829 | 5804936 | 5804829 | ID=cds.MS.gene048825.t1;Parent=MS.gene048825.t1 |
| chr4.3 | exon | 5805015 | 5805227 | 5805015 | ID=MS.gene048825.t1.exon9;Parent=MS.gene048825.t1 |
| chr4.3 | CDS | 5805015 | 5805227 | 5805015 | ID=cds.MS.gene048825.t1;Parent=MS.gene048825.t1 |
| chr4.3 | exon | 5805340 | 5805401 | 5805340 | ID=MS.gene048825.t1.exon10;Parent=MS.gene048825.t1 |
| chr4.3 | CDS | 5805340 | 5805401 | 5805340 | ID=cds.MS.gene048825.t1;Parent=MS.gene048825.t1 |
| chr4.3 | exon | 5805550 | 5805577 | 5805550 | ID=MS.gene048825.t1.exon11;Parent=MS.gene048825.t1 |
| chr4.3 | CDS | 5805550 | 5805577 | 5805550 | ID=cds.MS.gene048825.t1;Parent=MS.gene048825.t1 |
| chr4.3 | exon | 5805657 | 5805743 | 5805657 | ID=MS.gene048825.t1.exon12;Parent=MS.gene048825.t1 |
| chr4.3 | CDS | 5805657 | 5805743 | 5805657 | ID=cds.MS.gene048825.t1;Parent=MS.gene048825.t1 |
| chr4.3 | exon | 5805860 | 5805885 | 5805860 | ID=MS.gene048825.t1.exon13;Parent=MS.gene048825.t1 |
| chr4.3 | CDS | 5805860 | 5805885 | 5805860 | ID=cds.MS.gene048825.t1;Parent=MS.gene048825.t1 |
| chr4.3 | exon | 5805987 | 5806050 | 5805987 | ID=MS.gene048825.t1.exon14;Parent=MS.gene048825.t1 |
| chr4.3 | CDS | 5805987 | 5806050 | 5805987 | ID=cds.MS.gene048825.t1;Parent=MS.gene048825.t1 |
| chr4.3 | exon | 5806155 | 5806235 | 5806155 | ID=MS.gene048825.t1.exon15;Parent=MS.gene048825.t1 |
| chr4.3 | CDS | 5806155 | 5806235 | 5806155 | ID=cds.MS.gene048825.t1;Parent=MS.gene048825.t1 |
| chr4.3 | exon | 5806532 | 5806579 | 5806532 | ID=MS.gene048825.t1.exon16;Parent=MS.gene048825.t1 |
| chr4.3 | CDS | 5806532 | 5806579 | 5806532 | ID=cds.MS.gene048825.t1;Parent=MS.gene048825.t1 |
| chr4.3 | exon | 5806692 | 5806710 | 5806692 | ID=MS.gene048825.t1.exon17;Parent=MS.gene048825.t1 |
| chr4.3 | CDS | 5806692 | 5806710 | 5806692 | ID=cds.MS.gene048825.t1;Parent=MS.gene048825.t1 |
| chr4.3 | exon | 5806875 | 5806879 | 5806875 | ID=MS.gene048825.t1.exon18;Parent=MS.gene048825.t1 |
| chr4.3 | CDS | 5806875 | 5806879 | 5806875 | ID=cds.MS.gene048825.t1;Parent=MS.gene048825.t1 |
| chr4.3 | exon | 5806988 | 5806999 | 5806988 | ID=MS.gene048825.t1.exon19;Parent=MS.gene048825.t1 |
| chr4.3 | CDS | 5806988 | 5806999 | 5806988 | ID=cds.MS.gene048825.t1;Parent=MS.gene048825.t1 |
| chr4.3 | exon | 5807084 | 5807140 | 5807084 | ID=MS.gene048825.t1.exon20;Parent=MS.gene048825.t1 |
| chr4.3 | CDS | 5807084 | 5807140 | 5807084 | ID=cds.MS.gene048825.t1;Parent=MS.gene048825.t1 |
| chr4.3 | exon | 5807241 | 5807350 | 5807241 | ID=MS.gene048825.t1.exon21;Parent=MS.gene048825.t1 |
| chr4.3 | CDS | 5807241 | 5807350 | 5807241 | ID=cds.MS.gene048825.t1;Parent=MS.gene048825.t1 |
| chr4.3 | exon | 5807422 | 5807502 | 5807422 | ID=MS.gene048825.t1.exon22;Parent=MS.gene048825.t1 |
| chr4.3 | CDS | 5807422 | 5807502 | 5807422 | ID=cds.MS.gene048825.t1;Parent=MS.gene048825.t1 |
| chr4.3 | exon | 5807623 | 5807806 | 5807623 | ID=MS.gene048825.t1.exon23;Parent=MS.gene048825.t1 |
| chr4.3 | CDS | 5807623 | 5807806 | 5807623 | ID=cds.MS.gene048825.t1;Parent=MS.gene048825.t1 |
| chr4.3 | exon | 5809191 | 5809339 | 5809191 | ID=MS.gene048825.t1.exon24;Parent=MS.gene048825.t1 |
| chr4.3 | CDS | 5809191 | 5809339 | 5809191 | ID=cds.MS.gene048825.t1;Parent=MS.gene048825.t1 |
| chr4.3 | exon | 5809452 | 5809590 | 5809452 | ID=MS.gene048825.t1.exon25;Parent=MS.gene048825.t1 |
| chr4.3 | CDS | 5809452 | 5809590 | 5809452 | ID=cds.MS.gene048825.t1;Parent=MS.gene048825.t1 |
| chr4.3 | exon | 5809690 | 5809836 | 5809690 | ID=MS.gene048825.t1.exon26;Parent=MS.gene048825.t1 |
| chr4.3 | CDS | 5809690 | 5809836 | 5809690 | ID=cds.MS.gene048825.t1;Parent=MS.gene048825.t1 |
| chr4.3 | exon | 5809962 | 5810043 | 5809962 | ID=MS.gene048825.t1.exon27;Parent=MS.gene048825.t1 |
| chr4.3 | CDS | 5809962 | 5810043 | 5809962 | ID=cds.MS.gene048825.t1;Parent=MS.gene048825.t1 |
| chr4.3 | exon | 5810263 | 5810438 | 5810263 | ID=MS.gene048825.t1.exon28;Parent=MS.gene048825.t1 |
| chr4.3 | CDS | 5810263 | 5810438 | 5810263 | ID=cds.MS.gene048825.t1;Parent=MS.gene048825.t1 |
| chr4.3 | exon | 5810965 | 5811192 | 5810965 | ID=MS.gene048825.t1.exon29;Parent=MS.gene048825.t1 |
| chr4.3 | CDS | 5810965 | 5811192 | 5810965 | ID=cds.MS.gene048825.t1;Parent=MS.gene048825.t1 |
| chr4.3 | exon | 5811863 | 5811934 | 5811863 | ID=MS.gene048825.t1.exon30;Parent=MS.gene048825.t1 |
| chr4.3 | CDS | 5811863 | 5811934 | 5811863 | ID=cds.MS.gene048825.t1;Parent=MS.gene048825.t1 |
| chr4.3 | exon | 5812052 | 5812132 | 5812052 | ID=MS.gene048825.t1.exon31;Parent=MS.gene048825.t1 |
| chr4.3 | CDS | 5812052 | 5812132 | 5812052 | ID=cds.MS.gene048825.t1;Parent=MS.gene048825.t1 |
| Gene Sequence |
| Protein sequence |
