AlfalfaGEDB | MS.gene048901

M. sativa cultivar XinJiangDaYe / MS.gene048901

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005515 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28 PF08263.15 PF13855.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene048901.t1	XP_013447155.1	96.4	639	23	0	1	639	1	639	3.20E-290	1007.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene048901.t1	Q9SUQ3	65.7	642	196	9	3	633	7	635	1.4e-177	624.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene048901.t1	A0A072TUR7	96.4	639	23	0	1	639	1	639	2.3e-290	1007.3

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene018205	MS.gene048901	PPI
MS.gene022050	MS.gene048901	PPI
MS.gene024182	MS.gene048901	PPI
MS.gene024183	MS.gene048901	PPI
MS.gene024184	MS.gene048901	PPI
MS.gene024185	MS.gene048901	PPI
MS.gene033615	MS.gene048901	PPI
MS.gene033617	MS.gene048901	PPI
MS.gene033618	MS.gene048901	PPI
MS.gene033619	MS.gene048901	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene048901.t1	MTR_8g099195	97.340	639	17	0	1	639	1	639	0.0	1274
MS.gene048901.t1	MTR_5g009660	70.598	602	144	5	11	611	18	587	0.0	860
MS.gene048901.t1	MTR_3g090660	62.171	608	203	9	8	607	13	601	0.0	741
MS.gene048901.t1	MTR_1g028890	57.655	614	208	13	1	608	5	572	0.0	667
MS.gene048901.t1	MTR_3g062500	49.315	657	272	11	3	627	23	650	0.0	611
MS.gene048901.t1	MTR_3g062500	49.315	657	272	11	3	627	33	660	0.0	611
MS.gene048901.t1	MTR_5g075630	51.433	628	286	9	3	619	31	650	0.0	595
MS.gene048901.t1	MTR_3g093710	47.812	617	297	9	23	627	32	635	0.0	563
MS.gene048901.t1	MTR_7g073710	49.670	606	284	9	4	596	10	607	0.0	546
MS.gene048901.t1	MTR_5g068210	45.987	598	272	14	18	597	25	589	6.94e-169	495

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene048901.t1	AT4G23740	67.758	611	181	8	13	609	19	627	803
MS.gene048901.t1	AT4G23740	67.758	611	181	8	13	609	19	627	803
MS.gene048901.t1	AT5G58300	50.495	606	281	7	23	614	48	648	603
MS.gene048901.t1	AT5G58300	50.495	606	281	7	23	614	48	648	603
MS.gene048901.t1	AT5G58300	50.495	606	281	7	23	614	48	648	603
MS.gene048901.t1	AT1G64210	52.951	610	246	12	3	599	4	585	598
MS.gene048901.t1	AT5G53320	52.677	579	237	9	22	596	25	570	573
MS.gene048901.t1	AT3G08680	49.673	612	286	8	3	596	8	615	562
MS.gene048901.t1	AT3G08680	49.673	612	286	8	3	596	8	615	562
MS.gene048901.t1	AT2G26730	48.644	627	279	11	6	601	11	625	549

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Find 143 sgRNAs with CRISPR-Local

Find 188 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCTCTTTATCTTCAAC+AGG	0.313257	4.2:+4897168	None:intergenic
AAAAGCAGTTTCGAGGAACA+TGG	0.557721	4.2:-4896344	MS.gene048901:CDS
AAACCTCTTTATCTTCAACA+GGG	0.686853	4.2:+4897169	None:intergenic
AAATCGCCCATCCACACAAC+CGG	0.488844	4.2:-4894839	MS.gene048901:CDS
AACATTTGGTACTGCTTATA+AGG	0.261175	4.2:-4896227	MS.gene048901:CDS
AACCGAGTATCCCAATCTAA+TGG	0.472741	4.2:+4895142	None:intergenic
AACCTTGAGAAATGAATATC+AGG	0.362363	4.2:+4896703	None:intergenic
AACGCCAAAGCTGTAAACAT+CGG	0.671248	4.2:+4894886	None:intergenic
AACTTCAGGTGCTCGGTAAC+CGG	0.444642	4.2:+4894937	None:intergenic
AATAAACTGACTTTCTTTGA+GGG	0.432127	4.2:-4896313	MS.gene048901:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAACCTCTTTATCTTCAAC+AGG	+	chr4.2:4894556-4894575	None:intergenic	30.0%
AAACCTCTTTATCTTCAACA+GGG	+	chr4.2:4894555-4894574	None:intergenic	30.0%
AACATTTGGTACTGCTTATA+AGG	-	chr4.2:4895494-4895513	MS.gene048901:intron	30.0%
AACCTTGAGAAATGAATATC+AGG	+	chr4.2:4895021-4895040	None:intergenic	30.0%
AGGTTACTAATAGTATTTGG+TGG	+	chr4.2:4894733-4894752	None:intergenic	30.0%
ATTACTGAGATTTCCTGATT+CGG	-	chr4.2:4895092-4895111	MS.gene048901:CDS	30.0%
CAGAAAGAGAATTATTTGCA+AGG	+	chr4.2:4894990-4895009	None:intergenic	30.0%
CATGATGTTTATTATCATGG+AGG	+	chr4.2:4896357-4896376	None:intergenic	30.0%
CTCCATGATAATAAACATCA+TGG	-	chr4.2:4896355-4896374	MS.gene048901:CDS	30.0%
CTTGCAAATAATTCTCTTTC+TGG	-	chr4.2:4894988-4895007	MS.gene048901:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.2	gene	4894496	4897247	4894496	ID=MS.gene048901
chr4.2	mRNA	4894496	4897247	4894496	ID=MS.gene048901.t1;Parent=MS.gene048901
chr4.2	exon	4896020	4897247	4896020	ID=MS.gene048901.t1.exon1;Parent=MS.gene048901.t1
chr4.2	CDS	4896020	4897247	4896020	ID=cds.MS.gene048901.t1;Parent=MS.gene048901.t1
chr4.2	exon	4894496	4895187	4894496	ID=MS.gene048901.t1.exon2;Parent=MS.gene048901.t1
chr4.2	CDS	4894496	4895187	4894496	ID=cds.MS.gene048901.t1;Parent=MS.gene048901.t1

Gene Sequence

>MS.gene048901

ATGAAATTTCTTCACATTTTATGCGTATTGTTGTGTATATGGCAAGGAAATTGTGACCCTGTTGAAGATAAAGAGGTTTTGCTTGATTTTGTGAACAAGTTTCCACCTTCAAGGACTTTGAATTGGAATGAAAGTTCTTCTGTTTGTGATAATTGGACTGGTGTTACTTGCAATGAAGATAGGTCTAGAGTTATAGCTATTCGTTTACCTGGTGTTGGATTTAATGGCAATATTCCACCAAATACTATTAGTAACCTTTCAGCTCTTGAAATTCTGAGTCTTAGATCCAATTTAATATCTGGGTTTTTTCCTTCTGATTTTTCCAATCTAAAAAACTTGTCTTTTCTTTATCTTCAGTTCAATAATTTATCTGGGTCTTTGCCTGATTTCTCAGTTTGGAAGAATCTTACTGTTGTTAATTTGTCTAACAACAAATTCAATGGTACTATTCCGCTTTCGCTCTCTAATTTGACTCAGCTTGCTGGTTTGAACCTTGCAAATAATTCTCTTTCTGGTGAAATTCCTGATATTCATTTCTCAAGGTTACAGGTGCTGAATTTGTCTAACAATGATTTAGAAGGAACTGTGCCTAAATCATTACTGAGATTTCCTGATTCGGCATTTGTTGGGAATAACATTACTCTAGGAAATTCTACTGCTGTTTCGCCTGTGCTTTCGCCGGTTTATGAGCCTTCTTCGAGGTCTGAGAAACGTGGGAGGCTAAGTGAAACAGCACTGCTGGGAATTAGTATTGTTGGTAGTTTACTTGGGATTGTAGCATTTGGTTTTTTGATGTTTGTGTGTTGCTGCTCTAGAAAAAAGGATGAATATGATGATGATGCATTTGTTGGAAAGTCGAATAAGGGAAAAATGTCTCCGGAAAAAGCAGTTTCGAGGAACATGGATGCTAATAATAAACTGACTTTCTTTGAGGGGTGTAATTATGCATTTGATTTGGAGGATTTGTTGAGAGCTTCTGCTGAGGTGCTGGGAAAGGGAACATTTGGTACTGCTTATAAGGCGATTCTTGAGGACGCGACTGCGGTTGTTGTGAAGAGATTGAAGGAAGTAGCCTTAGGAAAGAAGGATTTTGAGCAATATATGGAGATTGTTGGAAGTCTTAAACATGAGAATGTAGTTGAGCTCAAGGCATATTACTATTCCAAAGATGAGAAACTTATGGTATATGATTACTACAGCCGAGGGAGTGTCTCTTCTTTGTTGCATGGTATGTACCTTTATTTTAACCAGTTGCAATTTCATATATTTACTACGGTTGAATCAAATTTAAATAGATAAATATGTGCTTATTTCATATGTCTATGGCAATGTTTTTCATGAAAAAAAAAAGGTGTTTCTAATCTCTTGCTTGTTTAAGTAGCTTGCTGTACATGTTCACTTTTCTACTAGCTTAGTTGTTGTAGCTACTAACAATTAAATGGGCACTTTGACAGTCTGAACTTTGAAGTTTGAAAATATAGTTACATGTTCACTTTTCTACTAGCTTAGTTGTTGTAGCTACTAACAATTAAATGGGCACTTTGACAGTCTGAACTTTGAAGTTTGAAAATATAGTTGGTTTACATGTTTTCAGAAACATTAGGAATATCTACATTTTAGGCCATAATATCATTAAAATGGATTTGATGTGGTTGTTTGTCACTCTAGTAAGTCAACAATCTCTGTAGTTGATGAGGATAGGATGATTGAATTCCGAGTACTCAATTTGTCGAAGTGGCGATATGAATCATTTGATCTATAATCAACGACTTAAATTGACTGACTGCAGTGACTGTGGGAAACATGATTGCTGATGTTTCAATTTCTGATTGCTTACTGTACTAGTATTAATTTAATGCCTCCATGATAATAAACATCATGGAAGTTCACAATCTTACATAGGGTATACATGATACTCAACATTTTCTGTTTTGCTAGAGAAATAAAGATAAGTTTTTCCATAAATGGAAACTTGTCATAAAAATGTTAAATTAGTACATCAAACACATTACTCAATGTCTTCAATATATTCTTATAATTTTGCTTTATGAGAATTTCAGGGAAAAGAGGAGAGGACAAGGTGCCATTAGATTGGGATACTCGGTTGAGAATAGCTTTAGGTGCAGCAAGAGGCATTGCTCAAATCCATGTCGAGAATGGCGGTAAACTTGTCCATGGCAACATCAAGTCCTCAAATATCTTTCTCAATTCTAAACAATATGGCTGTGTATCTGATCTTGGTCTAGCAACCATATCAACCTCACTTGCCCTACCCATCTCACGCGCGGCCGGTTACCGAGCACCTGAAGTTACAGACACAAGGAAAGCCGCACAACCTTCCGATGTTTACAGCTTTGGCGTTGTATTACTAGAGCTTCTGACCGGGAAATCGCCCATCCACACAACCGGTGGTGATGAGATCATTCACTTGGTGAGATGGGTTCATTCAGTTGTCCGAGAGGAGTGGACGGCCGAAGTGTTTGACTTAGAGTTGATGAGATATCCAAACATAGAAGAAGAGATGGTCGAGATGTTGCAGATAGCTATGTCATGTGTGGTAAGAATGCCTGATCAGAGGCCTAAGATGTCAGAAGTTGTGAAGATGATAGAAAATGTGAGACAGTTTGATAATACACAAACTCAGCCATCATCTGAGAATCAAGGAGGAGTTAAATTATCATCTCAAACTGATAATGATAACATTAACTCCCCTTCTTCCACTTCATCCCCCTTACCAAAAGGAAGTGAATGA

Protein sequence

>MS.gene048901.t1

MKFLHILCVLLCIWQGNCDPVEDKEVLLDFVNKFPPSRTLNWNESSSVCDNWTGVTCNEDRSRVIAIRLPGVGFNGNIPPNTISNLSALEILSLRSNLISGFFPSDFSNLKNLSFLYLQFNNLSGSLPDFSVWKNLTVVNLSNNKFNGTIPLSLSNLTQLAGLNLANNSLSGEIPDIHFSRLQVLNLSNNDLEGTVPKSLLRFPDSAFVGNNITLGNSTAVSPVLSPVYEPSSRSEKRGRLSETALLGISIVGSLLGIVAFGFLMFVCCCSRKKDEYDDDAFVGKSNKGKMSPEKAVSRNMDANNKLTFFEGCNYAFDLEDLLRASAEVLGKGTFGTAYKAILEDATAVVVKRLKEVALGKKDFEQYMEIVGSLKHENVVELKAYYYSKDEKLMVYDYYSRGSVSSLLHGKRGEDKVPLDWDTRLRIALGAARGIAQIHVENGGKLVHGNIKSSNIFLNSKQYGCVSDLGLATISTSLALPISRAAGYRAPEVTDTRKAAQPSDVYSFGVVLLELLTGKSPIHTTGGDEIIHLVRWVHSVVREEWTAEVFDLELMRYPNIEEEMVEMLQIAMSCVVRMPDQRPKMSEVVKMIENVRQFDNTQTQPSSENQGGVKLSSQTDNDNINSPSSTSSPLPKGSE