AlfalfaGEDB | MS.gene53201

M. sativa cultivar XinJiangDaYe / MS.gene53201

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515 GO:0008270 GO:0043167 GO:0043169 GO:0046872 GO:0046914
PFAM: PF01535.23 PF12854.10 PF13041.9 PF14432.9 PF20430.1 PF20431.1

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene53201.t1	XP_003614059.1	93.1	567	36	2	1	566	1	565	0.00E+00	1088.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene53201.t1	Q0WQW5	61.3	538	196	5	38	566	104	638	2.2e-198	693.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene53201.t1	G7JWU2	93.1	567	36	2	1	566	1	565	0.0e+00	1088.2

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049297	MS.gene53201	0.832494	9.15E-56	-1.69E-46
MS.gene049758	MS.gene53201	0.813797	2.13E-51	-1.69E-46
MS.gene051662	MS.gene53201	0.826394	2.78E-54	-1.69E-46
MS.gene052376	MS.gene53201	0.802352	5.84E-49	-1.69E-46
MS.gene053836	MS.gene53201	0.84406	9.55E-59	-1.69E-46
MS.gene054473	MS.gene53201	0.817642	2.97E-52	-1.69E-46
MS.gene054667	MS.gene53201	0.802603	5.19E-49	-1.69E-46
MS.gene054942	MS.gene53201	0.812857	3.43E-51	-1.69E-46
MS.gene054983	MS.gene53201	0.820728	5.88E-53	-1.69E-46
MS.gene055428	MS.gene53201	0.813128	2.99E-51	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene007071	MS.gene53201	PPI
MS.gene007073	MS.gene53201	PPI
MS.gene011753	MS.gene53201	PPI
MS.gene018205	MS.gene53201	PPI
MS.gene024664	MS.gene53201	PPI
MS.gene028009	MS.gene53201	PPI
MS.gene032916	MS.gene53201	PPI
MS.gene041916	MS.gene53201	PPI
MS.gene051898	MS.gene53201	PPI
MS.gene06046	MS.gene53201	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene53201.t1	MTR_5g044260	93.122	567	36	2	1	566	1	565	0.0	1102
MS.gene53201.t1	MTR_2g018870	43.920	551	291	9	17	566	80	613	5.74e-157	462
MS.gene53201.t1	MTR_1g012380	40.603	564	310	10	8	566	57	600	3.14e-147	437
MS.gene53201.t1	MTR_4g113830	42.964	533	288	9	38	566	218	738	5.17e-146	439
MS.gene53201.t1	MTR_4g113830	28.764	445	257	11	44	445	92	519	2.66e-49	182
MS.gene53201.t1	MTR_4g113830	23.810	315	202	7	86	367	27	336	1.92e-17	86.7
MS.gene53201.t1	MTR_5g040920	40.787	559	301	7	9	566	57	586	9.56e-143	425
MS.gene53201.t1	MTR_5g040920	24.224	322	212	9	77	391	17	313	3.41e-21	97.8
MS.gene53201.t1	MTR_4g095065	39.757	576	303	9	23	566	63	626	2.27e-140	420
MS.gene53201.t1	MTR_4g095065	25.846	325	199	9	108	400	42	356	5.16e-17	84.7

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene53201.t1	AT1G59720	61.338	538	196	5	38	566	104	638	0.0	701
MS.gene53201.t1	AT1G08070	43.879	531	286	9	38	566	117	637	1.52e-151	449
MS.gene53201.t1	AT1G08070	31.195	343	158	6	46	354	28	326	1.15e-38	150
MS.gene53201.t1	AT1G08070	43.879	531	286	9	38	566	221	741	3.20e-150	449
MS.gene53201.t1	AT1G08070	34.473	351	187	7	38	354	89	430	2.17e-52	191
MS.gene53201.t1	AT1G08070	27.010	311	181	9	93	367	39	339	1.07e-22	103
MS.gene53201.t1	AT4G21065	42.190	557	302	12	15	566	54	595	2.26e-148	440
MS.gene53201.t1	AT2G02980	40.678	531	302	7	38	566	84	603	1.08e-145	433
MS.gene53201.t1	AT5G66520	39.421	553	293	7	46	566	78	620	9.78e-144	429
MS.gene53201.t1	AT5G66520	26.019	319	192	9	105	386	29	340	6.74e-22	100

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Find 104 sgRNAs with CRISPR-Local

Find 121 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCACATTCAGAGCCTCT+TGG	0.488684	5.4:+33785568	None:intergenic
AAACCCAAGTTTCAAAACAT+GGG	0.639929	5.4:+33786268	None:intergenic
AAACTTCACCTTCACCATTC+GGG	0.483894	5.4:+33785758	None:intergenic
AAAGGAAACAGAATACTATG+AGG	0.620268	5.4:-33785134	MS.gene53201:CDS
AAAGGAGGAATGTTGTTTCG+TGG	0.564060	5.4:-33786151	MS.gene53201:CDS
AAAGGGTAAGTGTGTTTATC+AGG	0.341488	5.4:+33786347	None:intergenic
AACACTCTTATTGGCATGCC+TGG	0.410628	5.4:+33785063	None:intergenic
AACCAGATGCTGTAATTTGG+AGG	0.525315	5.4:-33785530	MS.gene53201:CDS
AAGGGTGTGAGTAAAGAGCC+TGG	0.656105	5.4:-33785327	MS.gene53201:CDS
AAGTGTATGCTTCAGCAAGT+AGG	0.591394	5.4:-33785389	MS.gene53201:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACCCAAGTTTCAAAACAT+GGG	+	chr5.4:33785255-33785274	None:intergenic	30.0%
AAAGGAAACAGAATACTATG+AGG	-	chr5.4:33786386-33786405	MS.gene53201:CDS	30.0%
AGTGTGTAATGATTGTCATA+AGG	-	chr5.4:33786492-33786511	MS.gene53201:CDS	30.0%
AGTTTATGAACGAAATTCAG+GGG	-	chr5.4:33786299-33786318	MS.gene53201:CDS	30.0%
ATCTCTATTAAACTACAACC+AGG	+	chr5.4:33786214-33786233	None:intergenic	30.0%
ATCTTTACTTTGTGGATGAT+TGG	+	chr5.4:33786272-33786291	None:intergenic	30.0%
ATTCATTTCTATGCTTCATG+TGG	-	chr5.4:33785305-33785324	MS.gene53201:CDS	30.0%
TCATGGAATTCGATTATCTT+AGG	-	chr5.4:33785695-33785714	MS.gene53201:CDS	30.0%
TGTTTGATAGAATGTGTGAA+AGG	-	chr5.4:33785351-33785370	MS.gene53201:CDS	30.0%
TTAAACCAGATGCTGTAATT+TGG	-	chr5.4:33785987-33786006	MS.gene53201:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.4	gene	33784921	33786621	33784921	ID=MS.gene53201
chr5.4	mRNA	33784921	33786621	33784921	ID=MS.gene53201.t1;Parent=MS.gene53201
chr5.4	exon	33784921	33786621	33784921	ID=MS.gene53201.t1.exon1;Parent=MS.gene53201.t1
chr5.4	CDS	33784921	33786621	33784921	ID=cds.MS.gene53201.t1;Parent=MS.gene53201.t1

Gene Sequence

>MS.gene53201

ATGCCTTTGTCCTTTGCAACAACCAATACCAACACCAACCTCAAACACATTACTCACTTGTTAAACCAATCTAAACCTATCTCTCACTCTCACCTTAAACAAATTCACACTCAAATACTTCGCACTATTCACACCCCAAATTCCTTCACATGGAACATTCTCATACGATCCTACGCTAAATCCACACTTCACAAACACAATGCCATTCTTCTCTACAAAGCAATGGTAAATGAACAAGAAAATGAACTCTTTCCTGATAAACACACTTACCCTTTTGTTCTTAAAGCTTGTGCTTACTTGTTTTCGTTATTCGAAGGAAAACAGGTTCATGCCCATGTTTTGAAACTTGGGTTTGAGTTAGATACTTATATTTGTAACAGTTTGATTCATTTCTATGCTTCATGTGGGTGTTTGGAAATGGCGCGAAACGTGTTTGATAGAATGTGTGAAAGGAGGAATGTTGTTTCGTGGAATGTAATGATTGATTCTTACACGAAAGATGGAGAGTATGATATTGTTTTGATTATGTTTTGTGAGATGATGAAGGTATATGAACCTGATTGTTACACGATGCAGAGTGTTATTAGGGCTTGTGGTGGTTTAGGTTCGCTTTCGTTGGGTATGTGGGTTCATGCTTTTGTTTTGAAAAAGTGCGATAAGAATGTGATTTGTGATGTTTTGGTTAATACTTGTTTGGTTGATATGTATTGTAAATGTGGATCGTTGGAAATTGCTAAGCAGGTTTTTGAAGGAATGTCTTATCGAGATGTGAGTTCATGGAATTCGATTATCTTAGGTTTTGCCGTGCATGGGAAAGCTAAGGCAGCATTGGATTATTTTACCCGAATGGTGAAGGTGAAGTTTGTGCCGAATTCTATCAATTTTGTTGGTGTGTTGAGTGCATGTAATCATAGTGGAATGGTTAACGAAGGGTTGATGTATTTTGAAATGATGACTAAGGAGTACAATGTTGAACCAAGTCTGGTGCATTATGGATGTCTTGTTGATCTTTACGCTAGAGCTGGACATATCCAAGAGGCTCTGAATGTGGTTTCAGAAATGCCGATTAAACCAGATGCTGTAATTTGGAGGAGTCTTTTAGATGCTTGTTATAAGCAACATGCAAGTATCGAGCTAAGTGAAGAAATAACAAAGCAAGTTTTTGAATCAAATGGGAGTGTTTGTGGTGGTGCTTATGTTCTTTTGTCGAAAGTGTATGCTTCAGCAAGTAGGTGGAATGATGTAGGGTTGCTTAGAAAGCTAATGAATGATAAGGGTGTGAGTAAAGAGCCTGGTTGTAGTTTAATAGAGATAAATGGTGCTGCTCATGAATTTTTTGCCGGAGACACCAATCATCCACAAAGTAAAGATATATATAAGTTTATGAACGAAATTCAGGGGAAACTAGAATCTATAGGGTATTTACCTGACTATTCAGGTGCACCATTGATTGATGAGATTAATGAAAGGAAACAGAATACTATGAGGTTGCATAGTGAGAGATTGGCCATAGCTTTTGGGCTTTTGAATTCAAAACCAGGCATGCCAATAAGAGTGTTTAAGAATCTTAGAGTGTGTAATGATTGTCATAAGGTTACTAAATTAATATCTAGAATTTACAATGTGGAGATAATTGTAAGAGATCGTGTTCGATTTCGTCACTTTAAAGATGGGAGTTGTTCTTGTATGGACTATTGGTGA

Protein sequence

>MS.gene53201.t1

MPLSFATTNTNTNLKHITHLLNQSKPISHSHLKQIHTQILRTIHTPNSFTWNILIRSYAKSTLHKHNAILLYKAMVNEQENELFPDKHTYPFVLKACAYLFSLFEGKQVHAHVLKLGFELDTYICNSLIHFYASCGCLEMARNVFDRMCERRNVVSWNVMIDSYTKDGEYDIVLIMFCEMMKVYEPDCYTMQSVIRACGGLGSLSLGMWVHAFVLKKCDKNVICDVLVNTCLVDMYCKCGSLEIAKQVFEGMSYRDVSSWNSIILGFAVHGKAKAALDYFTRMVKVKFVPNSINFVGVLSACNHSGMVNEGLMYFEMMTKEYNVEPSLVHYGCLVDLYARAGHIQEALNVVSEMPIKPDAVIWRSLLDACYKQHASIELSEEITKQVFESNGSVCGGAYVLLSKVYASASRWNDVGLLRKLMNDKGVSKEPGCSLIEINGAAHEFFAGDTNHPQSKDIYKFMNEIQGKLESIGYLPDYSGAPLIDEINERKQNTMRLHSERLAIAFGLLNSKPGMPIRVFKNLRVCNDCHKVTKLISRIYNVEIIVRDRVRFRHFKDGSCSCMDYW