Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049169.t1 | XP_003602745.1 | 97.2 | 392 | 11 | 0 | 1 | 392 | 1 | 392 | 8.50E-185 | 656.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049169.t1 | O48559 | 93.4 | 395 | 23 | 1 | 1 | 392 | 1 | 395 | 1.1e-177 | 624.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049169.t1 | Q5BN33 | 97.2 | 392 | 11 | 0 | 1 | 392 | 1 | 392 | 6.1e-185 | 656.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene049169.t1 | TF | LFY |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049169 | MS.gene06286 | 0.897962 | 8.45E-77 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049169.t1 | MTR_3g098560 | 99.490 | 392 | 2 | 0 | 1 | 392 | 1 | 392 | 0.0 | 808 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049169.t1 | AT5G61850 | 65.594 | 404 | 115 | 7 | 1 | 386 | 1 | 398 | 5.26e-160 | 456 |
| MS.gene049169.t1 | AT5G61850 | 64.951 | 408 | 115 | 8 | 1 | 386 | 1 | 402 | 1.76e-157 | 450 |
Find 119 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAGCTGAGAAGAGGGTTTA+AGG | 0.220415 | 3.3:+81047077 | MS.gene049169:CDS |
| ATGTCGTGAGTTCTTGATTC+AGG | 0.260029 | 3.3:+81046326 | MS.gene049169:CDS |
| GGTAACCTTGCTGGGTAATA+AGG | 0.267462 | 3.3:-81045358 | None:intergenic |
| GAGGCGGTGGGAAGCGGAGG+AGG | 0.273663 | 3.3:+81046060 | MS.gene049169:CDS |
| AGTTCTCTTGGTAACCTTGC+TGG | 0.317522 | 3.3:-81045367 | None:intergenic |
| CACATCCTCGTCTTTCAATA+TGG | 0.331865 | 3.3:+81047199 | MS.gene049169:CDS |
| AGGTGACAAATCAGGTATTT+AGG | 0.336960 | 3.3:+81046956 | MS.gene049169:intron |
| CCATTCATTGTGACAGAGCC+TGG | 0.376080 | 3.3:+81046246 | MS.gene049169:CDS |
| ACGGCATCAAAGCTGCCATT+AGG | 0.383226 | 3.3:+81045566 | MS.gene049169:CDS |
| GAGAAGGAGGCGGTGGGAAG+CGG | 0.385452 | 3.3:+81046054 | MS.gene049169:CDS |
| GACTGCGTAGTCGAGAAGTT+GGG | 0.398890 | 3.3:-81045314 | None:intergenic |
| CGGCATCAAAGCTGCCATTA+GGG | 0.401490 | 3.3:+81045567 | MS.gene049169:CDS |
| GAAGCGGAGGAGGGAGTACT+TGG | 0.416484 | 3.3:+81046070 | MS.gene049169:CDS |
| TTAGTATAGTATACCTTGGT+AGG | 0.417534 | 3.3:-81046384 | None:intergenic |
| AAACGCCGGGGTCTTCTCTC+TGG | 0.419881 | 3.3:+81045622 | MS.gene049169:CDS |
| CCAGGCTCTGTCACAATGAA+TGG | 0.421125 | 3.3:-81046246 | None:intergenic |
| AAGGAGGCGGTGGGAAGCGG+AGG | 0.424426 | 3.3:+81046057 | MS.gene049169:CDS |
| GCGTCTCCGTTCAGCCCTAA+TGG | 0.426738 | 3.3:-81045581 | None:intergenic |
| TCCAACCCTCCAAGTTCTCT+TGG | 0.430987 | 3.3:-81045379 | None:intergenic |
| TATTCTTAATTAAGGTTTGT+CGG | 0.438516 | 3.3:+81046011 | MS.gene049169:intron |
| TTGCCACGTGCAACTTCCCC+AGG | 0.439306 | 3.3:-81046264 | None:intergenic |
| GATTGAAGTCTAACTTAGAA+AGG | 0.448211 | 3.3:-81047312 | None:intergenic |
| TTAAGGTTTGTCGGAGGAGC+CGG | 0.457376 | 3.3:+81046020 | MS.gene049169:intron |
| GCAAGGTTACCAAGAGAACT+TGG | 0.476055 | 3.3:+81045370 | MS.gene049169:CDS |
| AAGGAGAAGGATGAAGATGA+AGG | 0.477090 | 3.3:+81046137 | MS.gene049169:CDS |
| AGAAGAGGGTTTAAGGAAAG+AGG | 0.480856 | 3.3:+81047084 | MS.gene049169:CDS |
| TGACTGCGTAGTCGAGAAGT+TGG | 0.482736 | 3.3:-81045315 | None:intergenic |
| GCTTCAAGCTCCGTCTCTGT+TGG | 0.485056 | 3.3:+81047276 | MS.gene049169:CDS |
| CAATAGCTGCACGTCAAGGA+TGG | 0.486959 | 3.3:+81047154 | MS.gene049169:CDS |
| GAAAGAGGCAGCAAATAAGA+AGG | 0.487031 | 3.3:+81046118 | MS.gene049169:CDS |
| ACAGCGAGAGAAGGAGGCGG+TGG | 0.487501 | 3.3:+81046047 | MS.gene049169:CDS |
| TGCGTGGGTCCCACTTGAAT+AGG | 0.494961 | 3.3:-81045261 | None:intergenic |
| TCCTTCTCTCGCTGTACCAC+CGG | 0.501299 | 3.3:-81046039 | None:intergenic |
| TAAGGTGACGGAGCAGTTGA+AGG | 0.502859 | 3.3:-81045340 | None:intergenic |
| AGGAGAAGGATGAAGATGAA+GGG | 0.505804 | 3.3:+81046138 | MS.gene049169:CDS |
| GAGAGCGTCAAGAGCGTTGG+TGG | 0.506027 | 3.3:-81045650 | None:intergenic |
| TTGAGTGTAGGTGACAAATC+AGG | 0.506470 | 3.3:+81046948 | MS.gene049169:intron |
| AGGCTGGCGGTGAATGCGTC+GGG | 0.507213 | 3.3:-81045241 | None:intergenic |
| GTTCTCTTGGTAACCTTGCT+GGG | 0.507232 | 3.3:-81045366 | None:intergenic |
| TGAAGAGGAAATTAAACGCC+GGG | 0.509415 | 3.3:+81045609 | MS.gene049169:CDS |
| TTTCGTTGGGATCTTCTCGT+TGG | 0.511591 | 3.3:+81045535 | MS.gene049169:CDS |
| AGTATCTGATTCCATAAGCT+TGG | 0.513074 | 3.3:-81045411 | None:intergenic |
| ATTGCATTGTTTAGATGAAG+AGG | 0.515227 | 3.3:+81047047 | MS.gene049169:CDS |
| GAATGAAGAAGGAGATGAGG+AGG | 0.516159 | 3.3:+81046179 | MS.gene049169:CDS |
| GTTTAATTTCCTCTTCATCA+AGG | 0.516212 | 3.3:-81045603 | None:intergenic |
| CTCTCCGCGTTCCTTAGCAA+TGG | 0.516636 | 3.3:-81046355 | None:intergenic |
| TGGGTCCCACTTGAATAGGC+TGG | 0.516787 | 3.3:-81045257 | None:intergenic |
| GGAGAAGGATGAAGATGAAG+GGG | 0.519390 | 3.3:+81046139 | MS.gene049169:CDS |
| ACCAAGAGAACTTGGAGGGT+TGG | 0.520875 | 3.3:+81045378 | MS.gene049169:CDS |
| AGGCGGTGGGAAGCGGAGGA+GGG | 0.524644 | 3.3:+81046061 | MS.gene049169:CDS |
| TTGGGAGGTAGCCGTGGTAG+AGG | 0.525371 | 3.3:+81046089 | MS.gene049169:CDS |
| CATTCATTGTGACAGAGCCT+GGG | 0.529014 | 3.3:+81046247 | MS.gene049169:CDS |
| CTTCTCGTTGGAGAACGTTA+CGG | 0.539245 | 3.3:+81045547 | MS.gene049169:CDS |
| ATGAAGGGGACTGGTGATCA+TGG | 0.540345 | 3.3:+81046153 | MS.gene049169:CDS |
| TGAGAATGAAGAAGGAGATG+AGG | 0.540691 | 3.3:+81046176 | MS.gene049169:CDS |
| AGGATGAAGATGAAGGGGAC+TGG | 0.542061 | 3.3:+81046144 | MS.gene049169:CDS |
| AAGAGAACTTGGAGGGTTGG+AGG | 0.545242 | 3.3:+81045381 | MS.gene049169:CDS |
| AGAGAGAGCGTCAAGAGCGT+TGG | 0.546844 | 3.3:-81045653 | None:intergenic |
| GCCGGTGGTACAGCGAGAGA+AGG | 0.548302 | 3.3:+81046038 | MS.gene049169:CDS |
| GGACGGAGAGGTGGAGCTGT+TGG | 0.549389 | 3.3:-81045292 | None:intergenic |
| GAGGAGAGAACGTTGGTGCA+TGG | 0.550139 | 3.3:+81047103 | MS.gene049169:CDS |
| AGAAGTTGGGGACGGAGAGG+TGG | 0.556007 | 3.3:-81045301 | None:intergenic |
| AGGTGGAGCTGTTGGTAGGA+CGG | 0.556396 | 3.3:-81045284 | None:intergenic |
| ACGGAGACGCCTTGATGAAG+AGG | 0.562424 | 3.3:+81045594 | MS.gene049169:CDS |
| GAAGTCTAACTTAGAAAGGA+AGG | 0.570913 | 3.3:-81047308 | None:intergenic |
| GCTGTTGGTAGGACGGTGCG+TGG | 0.571008 | 3.3:-81045277 | None:intergenic |
| TAGTATAGTATACCTTGGTA+GGG | 0.575157 | 3.3:-81046383 | None:intergenic |
| TAGGCTGGCGGTGAATGCGT+CGG | 0.576957 | 3.3:-81045242 | None:intergenic |
| CGTGCAGCTATTGCTACAAG+TGG | 0.585606 | 3.3:-81047144 | None:intergenic |
| GGTGGTACAGCGAGAGAAGG+AGG | 0.587891 | 3.3:+81046041 | MS.gene049169:CDS |
| GCGGCGAAGATAGCAGAGCT+TGG | 0.589296 | 3.3:+81045439 | MS.gene049169:CDS |
| GAAGAAGATAACATCAGTGG+TGG | 0.589570 | 3.3:+81046201 | MS.gene049169:CDS |
| AATAGCTGCACGTCAAGGAT+GGG | 0.590285 | 3.3:+81047155 | MS.gene049169:CDS |
| TCAGGTTCAAGCCATTGCTA+AGG | 0.593270 | 3.3:+81046344 | MS.gene049169:CDS |
| CTTTCTTCTCTCCTCTACCA+CGG | 0.594392 | 3.3:-81046100 | None:intergenic |
| ACTGCGTAGTCGAGAAGTTG+GGG | 0.596538 | 3.3:-81045313 | None:intergenic |
| GTATCAAATGAGCTGAGAAG+AGG | 0.605442 | 3.3:+81047069 | MS.gene049169:CDS |
| CAGCGAGAGAAGGAGGCGGT+GGG | 0.606592 | 3.3:+81046048 | MS.gene049169:CDS |
| TGGTAGAGGAGAGAAGAAAG+AGG | 0.608153 | 3.3:+81046103 | MS.gene049169:CDS |
| AGGTTTGTCGGAGGAGCCGG+TGG | 0.610012 | 3.3:+81046023 | MS.gene049169:intron |
| TCACCGCCAGCCTATTCAAG+TGG | 0.610527 | 3.3:+81045251 | MS.gene049169:CDS |
| GGAGAGGTGGAGCTGTTGGT+AGG | 0.611893 | 3.3:-81045288 | None:intergenic |
| GTCAGCTTTGTCATGCTGAG+AGG | 0.612831 | 3.3:+81047241 | MS.gene049169:CDS |
| GGCAGCAAATAAGAAGGAGA+AGG | 0.613195 | 3.3:+81046124 | MS.gene049169:CDS |
| TATCAAATGAGCTGAGAAGA+GGG | 0.613772 | 3.3:+81047070 | MS.gene049169:CDS |
| CGGAGGAGGGAGTACTTGGG+AGG | 0.615428 | 3.3:+81046074 | MS.gene049169:CDS |
| CTTGACGCTCTCTCTCAAGA+AGG | 0.618687 | 3.3:+81045661 | MS.gene049169:CDS |
| CTGTTGGTAGGACGGTGCGT+GGG | 0.619175 | 3.3:-81045276 | None:intergenic |
| CGTCACCTTATTACCCAGCA+AGG | 0.621883 | 3.3:+81045353 | MS.gene049169:CDS |
| GATCATGGTGAGAATGAAGA+AGG | 0.622763 | 3.3:+81046168 | MS.gene049169:CDS |
| AAGCGGAGGAGGGAGTACTT+GGG | 0.624155 | 3.3:+81046071 | MS.gene049169:CDS |
| GTAGCAATAGCTGCACGTCA+AGG | 0.625576 | 3.3:+81047150 | MS.gene049169:CDS |
| CTTGCTGGGTAATAAGGTGA+CGG | 0.634053 | 3.3:-81045352 | None:intergenic |
| GTCTAACTTAGAAAGGAAGG+TGG | 0.634743 | 3.3:-81047305 | None:intergenic |
| GTGGGCAGTTCCAACAGAGA+CGG | 0.635033 | 3.3:-81047286 | None:intergenic |
| GGTTACCAAGAGAACTTGGA+GGG | 0.636203 | 3.3:+81045374 | MS.gene049169:CDS |
| ATGAAGAGGAAATTAAACGC+CGG | 0.636563 | 3.3:+81045608 | MS.gene049169:CDS |
| AAGCTGCCATTAGGGCTGAA+CGG | 0.643172 | 3.3:+81045575 | MS.gene049169:CDS |
| CGGAGAGAAATGCCCTACCA+AGG | 0.646303 | 3.3:+81046371 | MS.gene049169:CDS |
| TCGAGAAGTTGGGGACGGAG+AGG | 0.648809 | 3.3:-81045304 | None:intergenic |
| CACCGCCAGCCTATTCAAGT+GGG | 0.649274 | 3.3:+81045252 | MS.gene049169:CDS |
| CAAGCCATTGCTAAGGAACG+CGG | 0.651128 | 3.3:+81046351 | MS.gene049169:CDS |
| GAGTACTTGGGAGGTAGCCG+TGG | 0.651576 | 3.3:+81046083 | MS.gene049169:CDS |
| TCTAACTTAGAAAGGAAGGT+GGG | 0.652391 | 3.3:-81047304 | None:intergenic |
| GAGCACGTTGGTGGACATGA+AGG | 0.653688 | 3.3:+81045471 | MS.gene049169:CDS |
| AAGAAGATAACATCAGTGGT+GGG | 0.654876 | 3.3:+81046202 | MS.gene049169:CDS |
| ATTCATTGTGACAGAGCCTG+GGG | 0.659933 | 3.3:+81046248 | MS.gene049169:CDS |
| GAGCCTGGGGAAGTTGCACG+TGG | 0.664392 | 3.3:+81046261 | MS.gene049169:CDS |
| AGGTTACCAAGAGAACTTGG+AGG | 0.664565 | 3.3:+81045373 | MS.gene049169:CDS |
| TCTTAATTAAGGTTTGTCGG+AGG | 0.666720 | 3.3:+81046014 | MS.gene049169:intron |
| AAGGAAAGAGGAGAGAACGT+TGG | 0.674755 | 3.3:+81047096 | MS.gene049169:CDS |
| GTCCCACTTGAATAGGCTGG+CGG | 0.674932 | 3.3:-81045254 | None:intergenic |
| CGTAGTCGAGAAGTTGGGGA+CGG | 0.679261 | 3.3:-81045309 | None:intergenic |
| GAGGAAGAAGATAACATCAG+TGG | 0.681977 | 3.3:+81046198 | MS.gene049169:CDS |
| GGTACAGCGAGAGAAGGAGG+CGG | 0.707868 | 3.3:+81046044 | MS.gene049169:CDS |
| ACGTACCATATTGAAAGACG+AGG | 0.718589 | 3.3:-81047204 | None:intergenic |
| GAAGAGGAAATTAAACGCCG+GGG | 0.750879 | 3.3:+81045610 | MS.gene049169:CDS |
| TATCACCAGAGAGAAGACCC+CGG | 0.770792 | 3.3:-81045627 | None:intergenic |
| TGGAATCAGATACTACACTG+CGG | 0.816299 | 3.3:+81045420 | MS.gene049169:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATACTATATTCTTAATTA+AGG | + | chr3.3:81046003-81046022 | MS.gene049169:intron | 10.0% |
| !! | TATACAAATAAAAAATTGTT+AGG | - | chr3.3:81045819-81045838 | None:intergenic | 10.0% |
| !!! | TTTTTATTTGTATATGAAAA+TGG | + | chr3.3:81045825-81045844 | MS.gene049169:intron | 10.0% |
| !! | ATTATTAGTACAAATATAAG+TGG | - | chr3.3:81045692-81045711 | None:intergenic | 15.0% |
| !! | TTATTCATTCATTTATTATC+CGG | + | chr3.3:81046706-81046725 | MS.gene049169:intron | 15.0% |
| !! | AAAGTAGTATCAAAATTTCA+TGG | - | chr3.3:81046822-81046841 | None:intergenic | 20.0% |
| !! | AATAAAACAAACAAAGTGTA+CGG | - | chr3.3:81046691-81046710 | None:intergenic | 20.0% |
| !! | AGTACATGATTAATAACTTT+AGG | + | chr3.3:81046901-81046920 | MS.gene049169:intron | 20.0% |
| !! | TATTCTTAATTAAGGTTTGT+CGG | + | chr3.3:81046011-81046030 | MS.gene049169:intron | 20.0% |
| !!! | TCATGGATATATTTTTGATT+GGG | - | chr3.3:81046805-81046824 | None:intergenic | 20.0% |
| !!! | TTCATGGATATATTTTTGAT+TGG | - | chr3.3:81046806-81046825 | None:intergenic | 20.0% |
| !!! | TTGATTATATTTGATAACTC+AGG | - | chr3.3:81045969-81045988 | None:intergenic | 20.0% |
| ! | TCATTAATTACTTTGAGTGT+AGG | + | chr3.3:81046936-81046955 | MS.gene049169:intron | 25.0% |
| ! | TTTGATACTACTTTGTGTAT+GGG | + | chr3.3:81046828-81046847 | MS.gene049169:intron | 25.0% |
| !! | TTTTGATACTACTTTGTGTA+TGG | + | chr3.3:81046827-81046846 | MS.gene049169:intron | 25.0% |
| ATTGCATTGTTTAGATGAAG+AGG | + | chr3.3:81047047-81047066 | MS.gene049169:CDS | 30.0% | |
| GTTGTTAGTATAGTATACCT+TGG | - | chr3.3:81046391-81046410 | None:intergenic | 30.0% | |
| TAGTATAGTATACCTTGGTA+GGG | - | chr3.3:81046386-81046405 | None:intergenic | 30.0% | |
| TTAGTATAGTATACCTTGGT+AGG | - | chr3.3:81046387-81046406 | None:intergenic | 30.0% | |
| TTTAGGTATGCAAAAAAAGC+TGG | + | chr3.3:81046973-81046992 | MS.gene049169:CDS | 30.0% | |
| ! | ATGCATGCATGATTTTGTTA+TGG | - | chr3.3:81046745-81046764 | None:intergenic | 30.0% |
| ! | CATGCATGCATTTTATTATC+CGG | + | chr3.3:81046754-81046773 | MS.gene049169:intron | 30.0% |
| ! | GTTTAATTTCCTCTTCATCA+AGG | - | chr3.3:81045606-81045625 | None:intergenic | 30.0% |
| !! | TTGATTGGGATTTGTTATGA+GGG | - | chr3.3:81046791-81046810 | None:intergenic | 30.0% |
| !! | TTTGATTGGGATTTGTTATG+AGG | - | chr3.3:81046792-81046811 | None:intergenic | 30.0% |
| AACACAACACAAAATCTGAC+TGG | - | chr3.3:81046529-81046548 | None:intergenic | 35.0% | |
| AAGAAGATAACATCAGTGGT+GGG | + | chr3.3:81046202-81046221 | MS.gene049169:CDS | 35.0% | |
| AGGTGACAAATCAGGTATTT+AGG | + | chr3.3:81046956-81046975 | MS.gene049169:intron | 35.0% | |
| AGTATCTGATTCCATAAGCT+TGG | - | chr3.3:81045414-81045433 | None:intergenic | 35.0% | |
| ATATGAAAATCCCAGTGGAA+TGG | - | chr3.3:81046658-81046677 | None:intergenic | 35.0% | |
| ATGAAGAGGAAATTAAACGC+CGG | + | chr3.3:81045608-81045627 | MS.gene049169:CDS | 35.0% | |
| CTTTGTGTATGGGATAGTAT+AGG | + | chr3.3:81046838-81046857 | MS.gene049169:intron | 35.0% | |
| TATCAAATGAGCTGAGAAGA+GGG | + | chr3.3:81047070-81047089 | MS.gene049169:CDS | 35.0% | |
| TATGAAAATCCCAGTGGAAT+GGG | - | chr3.3:81046657-81046676 | None:intergenic | 35.0% | |
| TCTTAATTAAGGTTTGTCGG+AGG | + | chr3.3:81046014-81046033 | MS.gene049169:intron | 35.0% | |
| TGATCATATGAAAATCCCAG+TGG | - | chr3.3:81046663-81046682 | None:intergenic | 35.0% | |
| TGTATGGGATAGTATAGGAT+AGG | + | chr3.3:81046843-81046862 | MS.gene049169:intron | 35.0% | |
| !! | GCAAGAAAGTACTGTTCAAA+CGG | - | chr3.3:81046575-81046594 | None:intergenic | 35.0% |
| !! | TTATGGTTCTAGTTTGTGAC+CGG | - | chr3.3:81046728-81046747 | None:intergenic | 35.0% |
| AAGGAGAAGGATGAAGATGA+AGG | + | chr3.3:81046137-81046156 | MS.gene049169:CDS | 40.0% | |
| ACGTACCATATTGAAAGACG+AGG | - | chr3.3:81047207-81047226 | None:intergenic | 40.0% | |
| AGAAGAGGGTTTAAGGAAAG+AGG | + | chr3.3:81047084-81047103 | MS.gene049169:CDS | 40.0% | |
| AGGAGAAGGATGAAGATGAA+GGG | + | chr3.3:81046138-81046157 | MS.gene049169:CDS | 40.0% | |
| ATGAAAATCCCAGTGGAATG+GGG | - | chr3.3:81046656-81046675 | None:intergenic | 40.0% | |
| ATGTCGTGAGTTCTTGATTC+AGG | + | chr3.3:81046326-81046345 | MS.gene049169:CDS | 40.0% | |
| CACATCCTCGTCTTTCAATA+TGG | + | chr3.3:81047199-81047218 | MS.gene049169:CDS | 40.0% | |
| GAAAGAGGCAGCAAATAAGA+AGG | + | chr3.3:81046118-81046137 | MS.gene049169:CDS | 40.0% | |
| GAAGAAGATAACATCAGTGG+TGG | + | chr3.3:81046201-81046220 | MS.gene049169:CDS | 40.0% | |
| GAGGAAGAAGATAACATCAG+TGG | + | chr3.3:81046198-81046217 | MS.gene049169:CDS | 40.0% | |
| GATCATGGTGAGAATGAAGA+AGG | + | chr3.3:81046168-81046187 | MS.gene049169:CDS | 40.0% | |
| GGATAGTATAGGATAGGATG+GGG | + | chr3.3:81046849-81046868 | MS.gene049169:intron | 40.0% | |
| GGGATAGTATAGGATAGGAT+GGG | + | chr3.3:81046848-81046867 | MS.gene049169:intron | 40.0% | |
| GTATCAAATGAGCTGAGAAG+AGG | + | chr3.3:81047069-81047088 | MS.gene049169:CDS | 40.0% | |
| TGAAGAGGAAATTAAACGCC+GGG | + | chr3.3:81045609-81045628 | MS.gene049169:CDS | 40.0% | |
| TGAGAATGAAGAAGGAGATG+AGG | + | chr3.3:81046176-81046195 | MS.gene049169:CDS | 40.0% | |
| TGGAATCAGATACTACACTG+CGG | + | chr3.3:81045420-81045439 | MS.gene049169:CDS | 40.0% | |
| TGGGATAGTATAGGATAGGA+TGG | + | chr3.3:81046847-81046866 | MS.gene049169:intron | 40.0% | |
| TTGAGTGTAGGTGACAAATC+AGG | + | chr3.3:81046948-81046967 | MS.gene049169:intron | 40.0% | |
| ! | GAGGAACTTTTCCAAGCTTA+TGG | + | chr3.3:81045400-81045419 | MS.gene049169:CDS | 40.0% |
| ! | TGCACGTAGTGTCTCATTTT+TGG | - | chr3.3:81047018-81047037 | None:intergenic | 40.0% |
| !! | CAAAGCTGACGAAGTTTTGT+TGG | - | chr3.3:81047231-81047250 | None:intergenic | 40.0% |
| AAGGAAAGAGGAGAGAACGT+TGG | + | chr3.3:81047096-81047115 | MS.gene049169:CDS | 45.0% | |
| AATAGCTGCACGTCAAGGAT+GGG | + | chr3.3:81047155-81047174 | MS.gene049169:CDS | 45.0% | |
| ACTGTTCAAACGGTTCGTGA+AGG | - | chr3.3:81046565-81046584 | None:intergenic | 45.0% | |
| AGGTTACCAAGAGAACTTGG+AGG | + | chr3.3:81045373-81045392 | MS.gene049169:CDS | 45.0% | |
| ATTCATTGTGACAGAGCCTG+GGG | + | chr3.3:81046248-81046267 | MS.gene049169:CDS | 45.0% | |
| CATTCATTGTGACAGAGCCT+GGG | + | chr3.3:81046247-81046266 | MS.gene049169:CDS | 45.0% | |
| CTTCTCGTTGGAGAACGTTA+CGG | + | chr3.3:81045547-81045566 | MS.gene049169:CDS | 45.0% | |
| CTTGCTGGGTAATAAGGTGA+CGG | - | chr3.3:81045355-81045374 | None:intergenic | 45.0% | |
| CTTTCTTCTCTCCTCTACCA+CGG | - | chr3.3:81046103-81046122 | None:intergenic | 45.0% | |
| GAAGAGGAAATTAAACGCCG+GGG | + | chr3.3:81045610-81045629 | MS.gene049169:CDS | 45.0% | |
| GAATGAAGAAGGAGATGAGG+AGG | + | chr3.3:81046179-81046198 | MS.gene049169:CDS | 45.0% | |
| GCAAGGTTACCAAGAGAACT+TGG | + | chr3.3:81045370-81045389 | MS.gene049169:CDS | 45.0% | |
| GGAGAAGGATGAAGATGAAG+GGG | + | chr3.3:81046139-81046158 | MS.gene049169:CDS | 45.0% | |
| GGCAGCAAATAAGAAGGAGA+AGG | + | chr3.3:81046124-81046143 | MS.gene049169:CDS | 45.0% | |
| GGTAACCTTGCTGGGTAATA+AGG | - | chr3.3:81045361-81045380 | None:intergenic | 45.0% | |
| GGTTACCAAGAGAACTTGGA+GGG | + | chr3.3:81045374-81045393 | MS.gene049169:CDS | 45.0% | |
| GTTGCACGTGGCAAAAAGAA+CGG | + | chr3.3:81046273-81046292 | MS.gene049169:CDS | 45.0% | |
| TATGAGGGCAAGCTAAGATC+CGG | - | chr3.3:81046776-81046795 | None:intergenic | 45.0% | |
| TCAGGTTCAAGCCATTGCTA+AGG | + | chr3.3:81046344-81046363 | MS.gene049169:CDS | 45.0% | |
| TGAGCTGAGAAGAGGGTTTA+AGG | + | chr3.3:81047077-81047096 | MS.gene049169:CDS | 45.0% | |
| TGGTAGAGGAGAGAAGAAAG+AGG | + | chr3.3:81046103-81046122 | MS.gene049169:CDS | 45.0% | |
| TTTCGTTGGGATCTTCTCGT+TGG | + | chr3.3:81045535-81045554 | MS.gene049169:CDS | 45.0% | |
| ! | AGTTCTCTTGGTAACCTTGC+TGG | - | chr3.3:81045370-81045389 | None:intergenic | 45.0% |
| ! | CCTCTCGCAGATTTTTCGTT+GGG | + | chr3.3:81045522-81045541 | MS.gene049169:CDS | 45.0% |
| ! | GTTCTCTTGGTAACCTTGCT+GGG | - | chr3.3:81045369-81045388 | None:intergenic | 45.0% |
| ! | TTTTACAGTGAGCACGTTGG+TGG | + | chr3.3:81045462-81045481 | MS.gene049169:CDS | 45.0% |
| !! | TGGTTTTACAGTGAGCACGT+TGG | + | chr3.3:81045459-81045478 | MS.gene049169:CDS | 45.0% |
| AAAATCCCAGTGGAATGGGG+AGG | - | chr3.3:81046653-81046672 | None:intergenic | 50.0% | |
| AACCCATTAGGAGAGTCCCT+GGG | - | chr3.3:81046627-81046646 | None:intergenic | 50.0% | |
| AAGAGAACTTGGAGGGTTGG+AGG | + | chr3.3:81045381-81045400 | MS.gene049169:CDS | 50.0% | |
| AAGCTGCCATTAGGGCTGAA+CGG | + | chr3.3:81045575-81045594 | MS.gene049169:CDS | 50.0% | |
| ACCAAGAGAACTTGGAGGGT+TGG | + | chr3.3:81045378-81045397 | MS.gene049169:CDS | 50.0% | |
| ACGGCATCAAAGCTGCCATT+AGG | + | chr3.3:81045566-81045585 | MS.gene049169:CDS | 50.0% | |
| ACGTGGCAAAAAGAACGGTC+TGG | + | chr3.3:81046278-81046297 | MS.gene049169:CDS | 50.0% | |
| ACTGCGTAGTCGAGAAGTTG+GGG | - | chr3.3:81045316-81045335 | None:intergenic | 50.0% | |
| AGGATGAAGATGAAGGGGAC+TGG | + | chr3.3:81046144-81046163 | MS.gene049169:CDS | 50.0% | |
| CAAGCCATTGCTAAGGAACG+CGG | + | chr3.3:81046351-81046370 | MS.gene049169:CDS | 50.0% | |
| CAATAGCTGCACGTCAAGGA+TGG | + | chr3.3:81047154-81047173 | MS.gene049169:CDS | 50.0% | |
| CCAGGCTCTGTCACAATGAA+TGG | - | chr3.3:81046249-81046268 | None:intergenic | 50.0% | |
| CCATTCATTGTGACAGAGCC+TGG | + | chr3.3:81046246-81046265 | MS.gene049169:CDS | 50.0% | |
| CCCAACGAAAAATCTGCGAG+AGG | - | chr3.3:81045525-81045544 | None:intergenic | 50.0% | |
| CGGCATCAAAGCTGCCATTA+GGG | + | chr3.3:81045567-81045586 | MS.gene049169:CDS | 50.0% | |
| CGTCACCTTATTACCCAGCA+AGG | + | chr3.3:81045353-81045372 | MS.gene049169:CDS | 50.0% | |
| CGTGCAGCTATTGCTACAAG+TGG | - | chr3.3:81047147-81047166 | None:intergenic | 50.0% | |
| CTTGACGCTCTCTCTCAAGA+AGG | + | chr3.3:81045661-81045680 | MS.gene049169:CDS | 50.0% | |
| GACTGCGTAGTCGAGAAGTT+GGG | - | chr3.3:81045317-81045336 | None:intergenic | 50.0% | |
| GTAGCAATAGCTGCACGTCA+AGG | + | chr3.3:81047150-81047169 | MS.gene049169:CDS | 50.0% | |
| GTGTTCGGATGAACGTGTCA+CGG | - | chr3.3:81046597-81046616 | None:intergenic | 50.0% | |
| TATCACCAGAGAGAAGACCC+CGG | - | chr3.3:81045630-81045649 | None:intergenic | 50.0% | |
| TCCAACCCTCCAAGTTCTCT+TGG | - | chr3.3:81045382-81045401 | None:intergenic | 50.0% | |
| TGACTGCGTAGTCGAGAAGT+TGG | - | chr3.3:81045318-81045337 | None:intergenic | 50.0% | |
| TTAAGGTTTGTCGGAGGAGC+CGG | + | chr3.3:81046020-81046039 | MS.gene049169:intron | 50.0% | |
| ! | ATGAAGGGGACTGGTGATCA+TGG | + | chr3.3:81046153-81046172 | MS.gene049169:CDS | 50.0% |
| ! | GCCTCTCGCAGATTTTTCGT+TGG | + | chr3.3:81045521-81045540 | MS.gene049169:CDS | 50.0% |
| ! | GTCAGCTTTGTCATGCTGAG+AGG | + | chr3.3:81047241-81047260 | MS.gene049169:CDS | 50.0% |
| !! | TAAGGTGACGGAGCAGTTGA+AGG | - | chr3.3:81045343-81045362 | None:intergenic | 50.0% |
| ACGGAGACGCCTTGATGAAG+AGG | + | chr3.3:81045594-81045613 | MS.gene049169:CDS | 55.0% | |
| ATGGGGAGGTGGAACCCATT+AGG | - | chr3.3:81046639-81046658 | None:intergenic | 55.0% | |
| CACCGCCAGCCTATTCAAGT+GGG | + | chr3.3:81045252-81045271 | MS.gene049169:CDS | 55.0% | |
| CGGAGAGAAATGCCCTACCA+AGG | + | chr3.3:81046371-81046390 | MS.gene049169:CDS | 55.0% | |
| CGTAGTCGAGAAGTTGGGGA+CGG | - | chr3.3:81045312-81045331 | None:intergenic | 55.0% | |
| CTCTCCGCGTTCCTTAGCAA+TGG | - | chr3.3:81046358-81046377 | None:intergenic | 55.0% | |
| GAACCCATTAGGAGAGTCCC+TGG | - | chr3.3:81046628-81046647 | None:intergenic | 55.0% | |
| GACCCAGGGACTCTCCTAAT+GGG | + | chr3.3:81046622-81046641 | MS.gene049169:intron | 55.0% | |
| GAGGAGAGAACGTTGGTGCA+TGG | + | chr3.3:81047103-81047122 | MS.gene049169:CDS | 55.0% | |
| GCTTCAAGCTCCGTCTCTGT+TGG | + | chr3.3:81047276-81047295 | MS.gene049169:CDS | 55.0% | |
| GTCCCACTTGAATAGGCTGG+CGG | - | chr3.3:81045257-81045276 | None:intergenic | 55.0% | |
| GTGGGCAGTTCCAACAGAGA+CGG | - | chr3.3:81047289-81047308 | None:intergenic | 55.0% | |
| TCACCGCCAGCCTATTCAAG+TGG | + | chr3.3:81045251-81045270 | MS.gene049169:CDS | 55.0% | |
| TCCTTCTCTCGCTGTACCAC+CGG | - | chr3.3:81046042-81046061 | None:intergenic | 55.0% | |
| TGCGTGGGTCCCACTTGAAT+AGG | - | chr3.3:81045264-81045283 | None:intergenic | 55.0% | |
| TGGGTCCCACTTGAATAGGC+TGG | - | chr3.3:81045260-81045279 | None:intergenic | 55.0% | |
| TTCCACCTCCCCATTCCACT+GGG | + | chr3.3:81046645-81046664 | MS.gene049169:intron | 55.0% | |
| ! | AGGTGGAGCTGTTGGTAGGA+CGG | - | chr3.3:81045287-81045306 | None:intergenic | 55.0% |
| ! | GAGCACGTTGGTGGACATGA+AGG | + | chr3.3:81045471-81045490 | MS.gene049169:CDS | 55.0% |
| !! | AAGCGGAGGAGGGAGTACTT+GGG | + | chr3.3:81046071-81046090 | MS.gene049169:CDS | 55.0% |
| !! | AGAGAGAGCGTCAAGAGCGT+TGG | - | chr3.3:81045656-81045675 | None:intergenic | 55.0% |
| AAACGCCGGGGTCTTCTCTC+TGG | + | chr3.3:81045622-81045641 | MS.gene049169:CDS | 60.0% | |
| AGAAGTTGGGGACGGAGAGG+TGG | - | chr3.3:81045304-81045323 | None:intergenic | 60.0% | |
| ATCCCAGTGGAATGGGGAGG+TGG | - | chr3.3:81046650-81046669 | None:intergenic | 60.0% | |
| ATCCGAACACGTGACGACCC+AGG | + | chr3.3:81046607-81046626 | MS.gene049169:intron | 60.0% | |
| CGACCCAGGGACTCTCCTAA+TGG | + | chr3.3:81046621-81046640 | MS.gene049169:intron | 60.0% | |
| GAGTACTTGGGAGGTAGCCG+TGG | + | chr3.3:81046083-81046102 | MS.gene049169:CDS | 60.0% | |
| GCGGCGAAGATAGCAGAGCT+TGG | + | chr3.3:81045439-81045458 | MS.gene049169:CDS | 60.0% | |
| GCGTCTCCGTTCAGCCCTAA+TGG | - | chr3.3:81045584-81045603 | None:intergenic | 60.0% | |
| GGAGAGGTGGAGCTGTTGGT+AGG | - | chr3.3:81045291-81045310 | None:intergenic | 60.0% | |
| GGTACAGCGAGAGAAGGAGG+CGG | + | chr3.3:81046044-81046063 | MS.gene049169:CDS | 60.0% | |
| GGTGGTACAGCGAGAGAAGG+AGG | + | chr3.3:81046041-81046060 | MS.gene049169:CDS | 60.0% | |
| GTTCCACCTCCCCATTCCAC+TGG | + | chr3.3:81046644-81046663 | MS.gene049169:intron | 60.0% | |
| TAGGCTGGCGGTGAATGCGT+CGG | - | chr3.3:81045245-81045264 | None:intergenic | 60.0% | |
| TCCCTGGGTCGTCACGTGTT+CGG | - | chr3.3:81046612-81046631 | None:intergenic | 60.0% | |
| TCCGAACACGTGACGACCCA+GGG | + | chr3.3:81046608-81046627 | MS.gene049169:intron | 60.0% | |
| TCGAGAAGTTGGGGACGGAG+AGG | - | chr3.3:81045307-81045326 | None:intergenic | 60.0% | |
| TTGCCACGTGCAACTTCCCC+AGG | - | chr3.3:81046267-81046286 | None:intergenic | 60.0% | |
| TTGGGAGGTAGCCGTGGTAG+AGG | + | chr3.3:81046089-81046108 | MS.gene049169:CDS | 60.0% | |
| ! | CTGTTGGTAGGACGGTGCGT+GGG | - | chr3.3:81045279-81045298 | None:intergenic | 60.0% |
| !! | GAAGCGGAGGAGGGAGTACT+TGG | + | chr3.3:81046070-81046089 | MS.gene049169:CDS | 60.0% |
| !! | GAGAGCGTCAAGAGCGTTGG+TGG | - | chr3.3:81045653-81045672 | None:intergenic | 60.0% |
| ACAGCGAGAGAAGGAGGCGG+TGG | + | chr3.3:81046047-81046066 | MS.gene049169:CDS | 65.0% | |
| AGGCTGGCGGTGAATGCGTC+GGG | - | chr3.3:81045244-81045263 | None:intergenic | 65.0% | |
| AGGTTTGTCGGAGGAGCCGG+TGG | + | chr3.3:81046023-81046042 | MS.gene049169:intron | 65.0% | |
| CAGCGAGAGAAGGAGGCGGT+GGG | + | chr3.3:81046048-81046067 | MS.gene049169:CDS | 65.0% | |
| GAGAAGGAGGCGGTGGGAAG+CGG | + | chr3.3:81046054-81046073 | MS.gene049169:CDS | 65.0% | |
| GAGCCTGGGGAAGTTGCACG+TGG | + | chr3.3:81046261-81046280 | MS.gene049169:CDS | 65.0% | |
| GCCGGTGGTACAGCGAGAGA+AGG | + | chr3.3:81046038-81046057 | MS.gene049169:CDS | 65.0% | |
| GGACGGAGAGGTGGAGCTGT+TGG | - | chr3.3:81045295-81045314 | None:intergenic | 65.0% | |
| ! | GCTGTTGGTAGGACGGTGCG+TGG | - | chr3.3:81045280-81045299 | None:intergenic | 65.0% |
| !! | CGGAGGAGGGAGTACTTGGG+AGG | + | chr3.3:81046074-81046093 | MS.gene049169:CDS | 65.0% |
| AAGGAGGCGGTGGGAAGCGG+AGG | + | chr3.3:81046057-81046076 | MS.gene049169:CDS | 70.0% | |
| AGGCGGTGGGAAGCGGAGGA+GGG | + | chr3.3:81046061-81046080 | MS.gene049169:CDS | 70.0% | |
| GAGGCGGTGGGAAGCGGAGG+AGG | + | chr3.3:81046060-81046079 | MS.gene049169:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 81045235 | 81047320 | 81045235 | ID=MS.gene049169 |
| chr3.3 | mRNA | 81045235 | 81047320 | 81045235 | ID=MS.gene049169.t1;Parent=MS.gene049169 |
| chr3.3 | exon | 81045235 | 81045682 | 81045235 | ID=MS.gene049169.t1.exon1;Parent=MS.gene049169.t1 |
| chr3.3 | CDS | 81045235 | 81045682 | 81045235 | ID=cds.MS.gene049169.t1;Parent=MS.gene049169.t1 |
| chr3.3 | exon | 81046025 | 81046392 | 81046025 | ID=MS.gene049169.t1.exon2;Parent=MS.gene049169.t1 |
| chr3.3 | CDS | 81046025 | 81046392 | 81046025 | ID=cds.MS.gene049169.t1;Parent=MS.gene049169.t1 |
| chr3.3 | exon | 81046958 | 81047320 | 81046958 | ID=MS.gene049169.t1.exon3;Parent=MS.gene049169.t1 |
| chr3.3 | CDS | 81046958 | 81047320 | 81046958 | ID=cds.MS.gene049169.t1;Parent=MS.gene049169.t1 |
| Gene Sequence |
| Protein sequence |
