Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06286.t1 | XP_003602745.1 | 97.2 | 392 | 11 | 0 | 1 | 392 | 1 | 392 | 8.50E-185 | 656.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06286.t1 | O48559 | 93.4 | 395 | 23 | 1 | 1 | 392 | 1 | 395 | 1.1e-177 | 624.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06286.t1 | Q5BN33 | 97.2 | 392 | 11 | 0 | 1 | 392 | 1 | 392 | 6.1e-185 | 656.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene06286.t1 | TF | LFY |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049169 | MS.gene06286 | 0.897962 | 8.45E-77 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06286.t1 | MTR_3g098560 | 99.490 | 392 | 2 | 0 | 1 | 392 | 1 | 392 | 0.0 | 808 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06286.t1 | AT5G61850 | 65.594 | 404 | 115 | 7 | 1 | 386 | 1 | 398 | 5.26e-160 | 456 |
| MS.gene06286.t1 | AT5G61850 | 64.951 | 408 | 115 | 8 | 1 | 386 | 1 | 402 | 1.76e-157 | 450 |
Find 120 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAGCTGAGAAGAGGGTTTA+AGG | 0.220415 | 3.1:+78122617 | MS.gene06286:CDS |
| ATGTCGTGAGTTCTTGATTC+AGG | 0.260029 | 3.1:+78121866 | MS.gene06286:CDS |
| GGTAACCTTGCTGGGTAATA+AGG | 0.267462 | 3.1:-78120901 | None:intergenic |
| GAGGCGGTGGGAAGCGGAGG+AGG | 0.273663 | 3.1:+78121600 | MS.gene06286:CDS |
| AGTTCTCTTGGTAACCTTGC+TGG | 0.317522 | 3.1:-78120910 | None:intergenic |
| CACATCCTCGTCTTTCAATA+TGG | 0.331865 | 3.1:+78122739 | MS.gene06286:CDS |
| AGGTGACAAATCAGGTATTT+AGG | 0.336960 | 3.1:+78122496 | MS.gene06286:intron |
| CCATTCATTGTGACAGAGCC+TGG | 0.376080 | 3.1:+78121786 | MS.gene06286:CDS |
| ACGGCATCAAAGCTGCCATT+AGG | 0.383226 | 3.1:+78121109 | MS.gene06286:CDS |
| GAGAAGGAGGCGGTGGGAAG+CGG | 0.385452 | 3.1:+78121594 | MS.gene06286:CDS |
| GACTGCGTAGTCGAGAAGTT+GGG | 0.398890 | 3.1:-78120857 | None:intergenic |
| CGGCATCAAAGCTGCCATTA+GGG | 0.401490 | 3.1:+78121110 | MS.gene06286:CDS |
| GAAGCGGAGGAGGGAGTACT+TGG | 0.416484 | 3.1:+78121610 | MS.gene06286:CDS |
| TTAGTATAGTATACCTTGGT+AGG | 0.417534 | 3.1:-78121924 | None:intergenic |
| AAACGCCGGGGTCTTCTCTC+TGG | 0.419881 | 3.1:+78121165 | MS.gene06286:CDS |
| CCAGGCTCTGTCACAATGAA+TGG | 0.421125 | 3.1:-78121786 | None:intergenic |
| AAGGAGGCGGTGGGAAGCGG+AGG | 0.424426 | 3.1:+78121597 | MS.gene06286:CDS |
| GCGTCTCCGTTCAGCCCTAA+TGG | 0.426738 | 3.1:-78121124 | None:intergenic |
| TCCAACCCTCCAAGTTCTCT+TGG | 0.430987 | 3.1:-78120922 | None:intergenic |
| TATTCTTAATTAAGGTTTGT+CGG | 0.438516 | 3.1:+78121551 | MS.gene06286:intron |
| TTGCCACGTGCAACTTCCCC+AGG | 0.439306 | 3.1:-78121804 | None:intergenic |
| GATTGAAGTCTAACTTAGAA+AGG | 0.448211 | 3.1:-78122852 | None:intergenic |
| TTAAGGTTTGTCGGAGGAGC+CGG | 0.457376 | 3.1:+78121560 | MS.gene06286:intron |
| GCAAGGTTACCAAGAGAACT+TGG | 0.476055 | 3.1:+78120913 | MS.gene06286:CDS |
| AAGGAGAAGGATGAAGATGA+AGG | 0.477090 | 3.1:+78121677 | MS.gene06286:CDS |
| AGAAGAGGGTTTAAGGAAAG+AGG | 0.480856 | 3.1:+78122624 | MS.gene06286:CDS |
| TGACTGCGTAGTCGAGAAGT+TGG | 0.482736 | 3.1:-78120858 | None:intergenic |
| GCTTCAAGCTCCGTCTCTGT+TGG | 0.485056 | 3.1:+78122816 | MS.gene06286:CDS |
| CAATAGCTGCACGTCAAGGA+TGG | 0.486959 | 3.1:+78122694 | MS.gene06286:CDS |
| GAAAGAGGCAGCAAATAAGA+AGG | 0.487031 | 3.1:+78121658 | MS.gene06286:CDS |
| ACAGCGAGAGAAGGAGGCGG+TGG | 0.487501 | 3.1:+78121587 | MS.gene06286:CDS |
| TTTAGGTATGCAAAGAAAGC+TGG | 0.492979 | 3.1:+78122513 | MS.gene06286:CDS |
| TGCGTGGGTCCCACTTGAAT+AGG | 0.494961 | 3.1:-78120804 | None:intergenic |
| TCCTTCTCTCGCTGTACCAC+CGG | 0.501299 | 3.1:-78121579 | None:intergenic |
| TAAGGTGACGGAGCAGTTGA+AGG | 0.502859 | 3.1:-78120883 | None:intergenic |
| AGGAGAAGGATGAAGATGAA+GGG | 0.505804 | 3.1:+78121678 | MS.gene06286:CDS |
| GAGAGCGTCAAGAGCGTTGG+TGG | 0.506027 | 3.1:-78121193 | None:intergenic |
| TTGAGTGTAGGTGACAAATC+AGG | 0.506470 | 3.1:+78122488 | MS.gene06286:intron |
| AGGCTGGCGGTGAATGCGTC+GGG | 0.507213 | 3.1:-78120784 | None:intergenic |
| GTTCTCTTGGTAACCTTGCT+GGG | 0.507232 | 3.1:-78120909 | None:intergenic |
| TGAAGAGGAAATTAAACGCC+GGG | 0.509415 | 3.1:+78121152 | MS.gene06286:CDS |
| TTTCGTTGGGATCTTCTCGT+TGG | 0.511591 | 3.1:+78121078 | MS.gene06286:CDS |
| AGTATCTGATTCCATAAGCT+TGG | 0.513074 | 3.1:-78120954 | None:intergenic |
| ATTGCATTGTTTAGATGAAG+AGG | 0.515227 | 3.1:+78122587 | MS.gene06286:CDS |
| GAATGAAGAAGGAGATGAGG+AGG | 0.516159 | 3.1:+78121719 | MS.gene06286:CDS |
| GTTTAATTTCCTCTTCATCA+AGG | 0.516212 | 3.1:-78121146 | None:intergenic |
| CTCTCCGCGTTCCTTAGCAA+TGG | 0.516636 | 3.1:-78121895 | None:intergenic |
| TGGGTCCCACTTGAATAGGC+TGG | 0.516787 | 3.1:-78120800 | None:intergenic |
| GGAGAAGGATGAAGATGAAG+GGG | 0.519390 | 3.1:+78121679 | MS.gene06286:CDS |
| ACCAAGAGAACTTGGAGGGT+TGG | 0.520875 | 3.1:+78120921 | MS.gene06286:CDS |
| AGGCGGTGGGAAGCGGAGGA+GGG | 0.524644 | 3.1:+78121601 | MS.gene06286:CDS |
| TTGGGAGGTAGCCGTGGTAG+AGG | 0.525371 | 3.1:+78121629 | MS.gene06286:CDS |
| CATTCATTGTGACAGAGCCT+GGG | 0.529014 | 3.1:+78121787 | MS.gene06286:CDS |
| CTTCTCGTTGGAGAACGTTA+CGG | 0.539245 | 3.1:+78121090 | MS.gene06286:CDS |
| ATGAAGGGGACTGGTGATCA+TGG | 0.540345 | 3.1:+78121693 | MS.gene06286:CDS |
| TGAGAATGAAGAAGGAGATG+AGG | 0.540691 | 3.1:+78121716 | MS.gene06286:CDS |
| AGGATGAAGATGAAGGGGAC+TGG | 0.542061 | 3.1:+78121684 | MS.gene06286:CDS |
| AAGAGAACTTGGAGGGTTGG+AGG | 0.545242 | 3.1:+78120924 | MS.gene06286:CDS |
| AGAGAGAGCGTCAAGAGCGT+TGG | 0.546844 | 3.1:-78121196 | None:intergenic |
| GCCGGTGGTACAGCGAGAGA+AGG | 0.548302 | 3.1:+78121578 | MS.gene06286:CDS |
| GGACGGAGAGGTGGAGCTGT+TGG | 0.549389 | 3.1:-78120835 | None:intergenic |
| GAGGAGAGAACGTTGGTGCA+TGG | 0.550139 | 3.1:+78122643 | MS.gene06286:CDS |
| AGAAGTTGGGGACGGAGAGG+TGG | 0.556007 | 3.1:-78120844 | None:intergenic |
| AGGTGGAGCTGTTGGTAGGA+CGG | 0.556396 | 3.1:-78120827 | None:intergenic |
| ACGGAGACGCCTTGATGAAG+AGG | 0.562424 | 3.1:+78121137 | MS.gene06286:CDS |
| GAAGTCTAACTTAGAAAGGA+AGG | 0.570913 | 3.1:-78122848 | None:intergenic |
| GCTGTTGGTAGGACGGTGCG+TGG | 0.571008 | 3.1:-78120820 | None:intergenic |
| TAGTATAGTATACCTTGGTA+GGG | 0.575157 | 3.1:-78121923 | None:intergenic |
| TAGGCTGGCGGTGAATGCGT+CGG | 0.576957 | 3.1:-78120785 | None:intergenic |
| CGTGCAGCTATTGCTACAAG+TGG | 0.585606 | 3.1:-78122684 | None:intergenic |
| GGTGGTACAGCGAGAGAAGG+AGG | 0.587891 | 3.1:+78121581 | MS.gene06286:CDS |
| GCGGCGAAGATAGCAGAGCT+TGG | 0.589296 | 3.1:+78120982 | MS.gene06286:CDS |
| GAAGAAGATAACATCAGTGG+TGG | 0.589570 | 3.1:+78121741 | MS.gene06286:CDS |
| AATAGCTGCACGTCAAGGAT+GGG | 0.590285 | 3.1:+78122695 | MS.gene06286:CDS |
| TCAGGTTCAAGCCATTGCTA+AGG | 0.593270 | 3.1:+78121884 | MS.gene06286:CDS |
| CTTTCTTCTCTCCTCTACCA+CGG | 0.594392 | 3.1:-78121640 | None:intergenic |
| ACTGCGTAGTCGAGAAGTTG+GGG | 0.596538 | 3.1:-78120856 | None:intergenic |
| GTATCAAATGAGCTGAGAAG+AGG | 0.605442 | 3.1:+78122609 | MS.gene06286:CDS |
| CAGCGAGAGAAGGAGGCGGT+GGG | 0.606592 | 3.1:+78121588 | MS.gene06286:CDS |
| TGGTAGAGGAGAGAAGAAAG+AGG | 0.608153 | 3.1:+78121643 | MS.gene06286:CDS |
| AGGTTTGTCGGAGGAGCCGG+TGG | 0.610012 | 3.1:+78121563 | MS.gene06286:intron |
| TCACCGCCAGCCTATTCAAG+TGG | 0.610527 | 3.1:+78120794 | MS.gene06286:CDS |
| GGAGAGGTGGAGCTGTTGGT+AGG | 0.611893 | 3.1:-78120831 | None:intergenic |
| GTCAGCTTTGTCATGCTGAG+AGG | 0.612831 | 3.1:+78122781 | MS.gene06286:CDS |
| GGCAGCAAATAAGAAGGAGA+AGG | 0.613195 | 3.1:+78121664 | MS.gene06286:CDS |
| TATCAAATGAGCTGAGAAGA+GGG | 0.613772 | 3.1:+78122610 | MS.gene06286:CDS |
| CGGAGGAGGGAGTACTTGGG+AGG | 0.615428 | 3.1:+78121614 | MS.gene06286:CDS |
| CTTGACGCTCTCTCTCAAGA+AGG | 0.618687 | 3.1:+78121204 | MS.gene06286:CDS |
| CTGTTGGTAGGACGGTGCGT+GGG | 0.619175 | 3.1:-78120819 | None:intergenic |
| CGTCACCTTATTACCCAGCA+AGG | 0.621883 | 3.1:+78120896 | MS.gene06286:CDS |
| GATCATGGTGAGAATGAAGA+AGG | 0.622763 | 3.1:+78121708 | MS.gene06286:CDS |
| AAGCGGAGGAGGGAGTACTT+GGG | 0.624155 | 3.1:+78121611 | MS.gene06286:CDS |
| GTAGCAATAGCTGCACGTCA+AGG | 0.625576 | 3.1:+78122690 | MS.gene06286:CDS |
| CTTGCTGGGTAATAAGGTGA+CGG | 0.634053 | 3.1:-78120895 | None:intergenic |
| GTCTAACTTAGAAAGGAAGG+TGG | 0.634743 | 3.1:-78122845 | None:intergenic |
| GTGGGCAGTTCCAACAGAGA+CGG | 0.635033 | 3.1:-78122826 | None:intergenic |
| GGTTACCAAGAGAACTTGGA+GGG | 0.636203 | 3.1:+78120917 | MS.gene06286:CDS |
| ATGAAGAGGAAATTAAACGC+CGG | 0.636563 | 3.1:+78121151 | MS.gene06286:CDS |
| AAGCTGCCATTAGGGCTGAA+CGG | 0.643172 | 3.1:+78121118 | MS.gene06286:CDS |
| CGGAGAGAAATGCCCTACCA+AGG | 0.646303 | 3.1:+78121911 | MS.gene06286:CDS |
| TCGAGAAGTTGGGGACGGAG+AGG | 0.648809 | 3.1:-78120847 | None:intergenic |
| CACCGCCAGCCTATTCAAGT+GGG | 0.649274 | 3.1:+78120795 | MS.gene06286:CDS |
| CAAGCCATTGCTAAGGAACG+CGG | 0.651128 | 3.1:+78121891 | MS.gene06286:CDS |
| GAGTACTTGGGAGGTAGCCG+TGG | 0.651576 | 3.1:+78121623 | MS.gene06286:CDS |
| TCTAACTTAGAAAGGAAGGT+GGG | 0.652391 | 3.1:-78122844 | None:intergenic |
| GAGCACGTTGGTGGACATGA+AGG | 0.653688 | 3.1:+78121014 | MS.gene06286:CDS |
| AAGAAGATAACATCAGTGGT+GGG | 0.654876 | 3.1:+78121742 | MS.gene06286:CDS |
| ATTCATTGTGACAGAGCCTG+GGG | 0.659933 | 3.1:+78121788 | MS.gene06286:CDS |
| GAGCCTGGGGAAGTTGCACG+TGG | 0.664392 | 3.1:+78121801 | MS.gene06286:CDS |
| AGGTTACCAAGAGAACTTGG+AGG | 0.664565 | 3.1:+78120916 | MS.gene06286:CDS |
| TCTTAATTAAGGTTTGTCGG+AGG | 0.666720 | 3.1:+78121554 | MS.gene06286:intron |
| AAGGAAAGAGGAGAGAACGT+TGG | 0.674755 | 3.1:+78122636 | MS.gene06286:CDS |
| GTCCCACTTGAATAGGCTGG+CGG | 0.674932 | 3.1:-78120797 | None:intergenic |
| CGTAGTCGAGAAGTTGGGGA+CGG | 0.679261 | 3.1:-78120852 | None:intergenic |
| GAGGAAGAAGATAACATCAG+TGG | 0.681977 | 3.1:+78121738 | MS.gene06286:CDS |
| GGTACAGCGAGAGAAGGAGG+CGG | 0.707868 | 3.1:+78121584 | MS.gene06286:CDS |
| ACGTACCATATTGAAAGACG+AGG | 0.718589 | 3.1:-78122744 | None:intergenic |
| GAAGAGGAAATTAAACGCCG+GGG | 0.750879 | 3.1:+78121153 | MS.gene06286:CDS |
| TATCACCAGAGAGAAGACCC+CGG | 0.770792 | 3.1:-78121170 | None:intergenic |
| TGGAATCAGATACTACACTG+CGG | 0.816299 | 3.1:+78120963 | MS.gene06286:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATACTATATTCTTAATTA+AGG | + | chr3.1:78121543-78121562 | MS.gene06286:intron | 10.0% |
| !! | TATACAAATAAAAAATTGTT+AGG | - | chr3.1:78121359-78121378 | None:intergenic | 10.0% |
| !!! | TTTTTATTTGTATATGAAAA+TGG | + | chr3.1:78121365-78121384 | MS.gene06286:intron | 10.0% |
| !! | ATTATTAGTACAAATATAAG+TGG | - | chr3.1:78121235-78121254 | None:intergenic | 15.0% |
| !! | TTATTCATTCATTTATTATC+CGG | + | chr3.1:78122246-78122265 | MS.gene06286:intron | 15.0% |
| !! | AAAGTAGTATCAAAATTTCA+TGG | - | chr3.1:78122362-78122381 | None:intergenic | 20.0% |
| !! | AATAAAACAAACAAAGTGTA+CGG | - | chr3.1:78122231-78122250 | None:intergenic | 20.0% |
| !! | AGTACATGATTAATAACTTT+AGG | + | chr3.1:78122441-78122460 | MS.gene06286:intron | 20.0% |
| !! | TATTCTTAATTAAGGTTTGT+CGG | + | chr3.1:78121551-78121570 | MS.gene06286:intron | 20.0% |
| !!! | TCATGGATATATTTTTGATT+GGG | - | chr3.1:78122345-78122364 | None:intergenic | 20.0% |
| !!! | TTCATGGATATATTTTTGAT+TGG | - | chr3.1:78122346-78122365 | None:intergenic | 20.0% |
| !!! | TTGATTATATTTGATAACTC+AGG | - | chr3.1:78121509-78121528 | None:intergenic | 20.0% |
| ! | TCATTAATTACTTTGAGTGT+AGG | + | chr3.1:78122476-78122495 | MS.gene06286:intron | 25.0% |
| ! | TTTGATACTACTTTGTGTAT+GGG | + | chr3.1:78122368-78122387 | MS.gene06286:intron | 25.0% |
| !! | TTTTGATACTACTTTGTGTA+TGG | + | chr3.1:78122367-78122386 | MS.gene06286:intron | 25.0% |
| ATTGCATTGTTTAGATGAAG+AGG | + | chr3.1:78122587-78122606 | MS.gene06286:CDS | 30.0% | |
| GTTGTTAGTATAGTATACCT+TGG | - | chr3.1:78121931-78121950 | None:intergenic | 30.0% | |
| TAGTATAGTATACCTTGGTA+GGG | - | chr3.1:78121926-78121945 | None:intergenic | 30.0% | |
| TTAGTATAGTATACCTTGGT+AGG | - | chr3.1:78121927-78121946 | None:intergenic | 30.0% | |
| ! | ATGCATGCATGATTTTGTTA+TGG | - | chr3.1:78122285-78122304 | None:intergenic | 30.0% |
| ! | CATGCATGCATTTTATTATC+CGG | + | chr3.1:78122294-78122313 | MS.gene06286:intron | 30.0% |
| ! | GTTTAATTTCCTCTTCATCA+AGG | - | chr3.1:78121149-78121168 | None:intergenic | 30.0% |
| !! | TTGATTGGGATTTGTTATGA+GGG | - | chr3.1:78122331-78122350 | None:intergenic | 30.0% |
| !! | TTTGATTGGGATTTGTTATG+AGG | - | chr3.1:78122332-78122351 | None:intergenic | 30.0% |
| AACACAACACAAAATCTGAC+TGG | - | chr3.1:78122069-78122088 | None:intergenic | 35.0% | |
| AAGAAGATAACATCAGTGGT+GGG | + | chr3.1:78121742-78121761 | MS.gene06286:CDS | 35.0% | |
| AGGTGACAAATCAGGTATTT+AGG | + | chr3.1:78122496-78122515 | MS.gene06286:intron | 35.0% | |
| AGTATCTGATTCCATAAGCT+TGG | - | chr3.1:78120957-78120976 | None:intergenic | 35.0% | |
| ATATGAAAATCCCAGTGGAA+TGG | - | chr3.1:78122198-78122217 | None:intergenic | 35.0% | |
| ATGAAGAGGAAATTAAACGC+CGG | + | chr3.1:78121151-78121170 | MS.gene06286:CDS | 35.0% | |
| CTTTGTGTATGGGATAGTAT+AGG | + | chr3.1:78122378-78122397 | MS.gene06286:intron | 35.0% | |
| TATCAAATGAGCTGAGAAGA+GGG | + | chr3.1:78122610-78122629 | MS.gene06286:CDS | 35.0% | |
| TATGAAAATCCCAGTGGAAT+GGG | - | chr3.1:78122197-78122216 | None:intergenic | 35.0% | |
| TCTTAATTAAGGTTTGTCGG+AGG | + | chr3.1:78121554-78121573 | MS.gene06286:intron | 35.0% | |
| TGATCATATGAAAATCCCAG+TGG | - | chr3.1:78122203-78122222 | None:intergenic | 35.0% | |
| TGTATGGGATAGTATAGGAT+AGG | + | chr3.1:78122383-78122402 | MS.gene06286:intron | 35.0% | |
| TTTAGGTATGCAAAGAAAGC+TGG | + | chr3.1:78122513-78122532 | MS.gene06286:CDS | 35.0% | |
| !! | GCAAGAAAGTACTGTTCAAA+CGG | - | chr3.1:78122115-78122134 | None:intergenic | 35.0% |
| !! | TTATGGTTCTAGTTTGTGAC+CGG | - | chr3.1:78122268-78122287 | None:intergenic | 35.0% |
| AAGGAGAAGGATGAAGATGA+AGG | + | chr3.1:78121677-78121696 | MS.gene06286:CDS | 40.0% | |
| ACGTACCATATTGAAAGACG+AGG | - | chr3.1:78122747-78122766 | None:intergenic | 40.0% | |
| AGAAGAGGGTTTAAGGAAAG+AGG | + | chr3.1:78122624-78122643 | MS.gene06286:CDS | 40.0% | |
| AGGAGAAGGATGAAGATGAA+GGG | + | chr3.1:78121678-78121697 | MS.gene06286:CDS | 40.0% | |
| ATGAAAATCCCAGTGGAATG+GGG | - | chr3.1:78122196-78122215 | None:intergenic | 40.0% | |
| ATGTCGTGAGTTCTTGATTC+AGG | + | chr3.1:78121866-78121885 | MS.gene06286:CDS | 40.0% | |
| CACATCCTCGTCTTTCAATA+TGG | + | chr3.1:78122739-78122758 | MS.gene06286:CDS | 40.0% | |
| GAAAGAGGCAGCAAATAAGA+AGG | + | chr3.1:78121658-78121677 | MS.gene06286:CDS | 40.0% | |
| GAAGAAGATAACATCAGTGG+TGG | + | chr3.1:78121741-78121760 | MS.gene06286:CDS | 40.0% | |
| GAGGAAGAAGATAACATCAG+TGG | + | chr3.1:78121738-78121757 | MS.gene06286:CDS | 40.0% | |
| GATCATGGTGAGAATGAAGA+AGG | + | chr3.1:78121708-78121727 | MS.gene06286:CDS | 40.0% | |
| GGATAGTATAGGATAGGATG+GGG | + | chr3.1:78122389-78122408 | MS.gene06286:intron | 40.0% | |
| GGGATAGTATAGGATAGGAT+GGG | + | chr3.1:78122388-78122407 | MS.gene06286:intron | 40.0% | |
| GTATCAAATGAGCTGAGAAG+AGG | + | chr3.1:78122609-78122628 | MS.gene06286:CDS | 40.0% | |
| TGAAGAGGAAATTAAACGCC+GGG | + | chr3.1:78121152-78121171 | MS.gene06286:CDS | 40.0% | |
| TGAGAATGAAGAAGGAGATG+AGG | + | chr3.1:78121716-78121735 | MS.gene06286:CDS | 40.0% | |
| TGGAATCAGATACTACACTG+CGG | + | chr3.1:78120963-78120982 | MS.gene06286:CDS | 40.0% | |
| TGGGATAGTATAGGATAGGA+TGG | + | chr3.1:78122387-78122406 | MS.gene06286:intron | 40.0% | |
| TTGAGTGTAGGTGACAAATC+AGG | + | chr3.1:78122488-78122507 | MS.gene06286:intron | 40.0% | |
| ! | GAGGAACTTTTCCAAGCTTA+TGG | + | chr3.1:78120943-78120962 | MS.gene06286:CDS | 40.0% |
| ! | TGCACGTAGTGTCTCATTTT+TGG | - | chr3.1:78122558-78122577 | None:intergenic | 40.0% |
| !! | CAAAGCTGACGAAGTTTTGT+TGG | - | chr3.1:78122771-78122790 | None:intergenic | 40.0% |
| AAGGAAAGAGGAGAGAACGT+TGG | + | chr3.1:78122636-78122655 | MS.gene06286:CDS | 45.0% | |
| AATAGCTGCACGTCAAGGAT+GGG | + | chr3.1:78122695-78122714 | MS.gene06286:CDS | 45.0% | |
| ACTGTTCAAACGGTTCGTGA+AGG | - | chr3.1:78122105-78122124 | None:intergenic | 45.0% | |
| AGGTTACCAAGAGAACTTGG+AGG | + | chr3.1:78120916-78120935 | MS.gene06286:CDS | 45.0% | |
| ATTCATTGTGACAGAGCCTG+GGG | + | chr3.1:78121788-78121807 | MS.gene06286:CDS | 45.0% | |
| CATTCATTGTGACAGAGCCT+GGG | + | chr3.1:78121787-78121806 | MS.gene06286:CDS | 45.0% | |
| CTTCTCGTTGGAGAACGTTA+CGG | + | chr3.1:78121090-78121109 | MS.gene06286:CDS | 45.0% | |
| CTTGCTGGGTAATAAGGTGA+CGG | - | chr3.1:78120898-78120917 | None:intergenic | 45.0% | |
| CTTTCTTCTCTCCTCTACCA+CGG | - | chr3.1:78121643-78121662 | None:intergenic | 45.0% | |
| GAAGAGGAAATTAAACGCCG+GGG | + | chr3.1:78121153-78121172 | MS.gene06286:CDS | 45.0% | |
| GAATGAAGAAGGAGATGAGG+AGG | + | chr3.1:78121719-78121738 | MS.gene06286:CDS | 45.0% | |
| GCAAGGTTACCAAGAGAACT+TGG | + | chr3.1:78120913-78120932 | MS.gene06286:CDS | 45.0% | |
| GGAGAAGGATGAAGATGAAG+GGG | + | chr3.1:78121679-78121698 | MS.gene06286:CDS | 45.0% | |
| GGCAGCAAATAAGAAGGAGA+AGG | + | chr3.1:78121664-78121683 | MS.gene06286:CDS | 45.0% | |
| GGTAACCTTGCTGGGTAATA+AGG | - | chr3.1:78120904-78120923 | None:intergenic | 45.0% | |
| GGTTACCAAGAGAACTTGGA+GGG | + | chr3.1:78120917-78120936 | MS.gene06286:CDS | 45.0% | |
| GTTGCACGTGGCAAAAAGAA+CGG | + | chr3.1:78121813-78121832 | MS.gene06286:CDS | 45.0% | |
| TATGAGGGCAAGCTAAGATC+CGG | - | chr3.1:78122316-78122335 | None:intergenic | 45.0% | |
| TCAGGTTCAAGCCATTGCTA+AGG | + | chr3.1:78121884-78121903 | MS.gene06286:CDS | 45.0% | |
| TGAGCTGAGAAGAGGGTTTA+AGG | + | chr3.1:78122617-78122636 | MS.gene06286:CDS | 45.0% | |
| TGGTAGAGGAGAGAAGAAAG+AGG | + | chr3.1:78121643-78121662 | MS.gene06286:CDS | 45.0% | |
| TTTCGTTGGGATCTTCTCGT+TGG | + | chr3.1:78121078-78121097 | MS.gene06286:CDS | 45.0% | |
| ! | AGTTCTCTTGGTAACCTTGC+TGG | - | chr3.1:78120913-78120932 | None:intergenic | 45.0% |
| ! | CCTCTCGCAGATTTTTCGTT+GGG | + | chr3.1:78121065-78121084 | MS.gene06286:CDS | 45.0% |
| ! | GTTCTCTTGGTAACCTTGCT+GGG | - | chr3.1:78120912-78120931 | None:intergenic | 45.0% |
| ! | TTTTACAGTGAGCACGTTGG+TGG | + | chr3.1:78121005-78121024 | MS.gene06286:CDS | 45.0% |
| !! | TGGTTTTACAGTGAGCACGT+TGG | + | chr3.1:78121002-78121021 | MS.gene06286:CDS | 45.0% |
| AAAATCCCAGTGGAATGGGG+AGG | - | chr3.1:78122193-78122212 | None:intergenic | 50.0% | |
| AACCCATTAGGAGAGTCCCT+GGG | - | chr3.1:78122167-78122186 | None:intergenic | 50.0% | |
| AAGAGAACTTGGAGGGTTGG+AGG | + | chr3.1:78120924-78120943 | MS.gene06286:CDS | 50.0% | |
| AAGCTGCCATTAGGGCTGAA+CGG | + | chr3.1:78121118-78121137 | MS.gene06286:CDS | 50.0% | |
| ACCAAGAGAACTTGGAGGGT+TGG | + | chr3.1:78120921-78120940 | MS.gene06286:CDS | 50.0% | |
| ACGGCATCAAAGCTGCCATT+AGG | + | chr3.1:78121109-78121128 | MS.gene06286:CDS | 50.0% | |
| ACGTGGCAAAAAGAACGGTC+TGG | + | chr3.1:78121818-78121837 | MS.gene06286:CDS | 50.0% | |
| ACTGCGTAGTCGAGAAGTTG+GGG | - | chr3.1:78120859-78120878 | None:intergenic | 50.0% | |
| AGGATGAAGATGAAGGGGAC+TGG | + | chr3.1:78121684-78121703 | MS.gene06286:CDS | 50.0% | |
| CAAGCCATTGCTAAGGAACG+CGG | + | chr3.1:78121891-78121910 | MS.gene06286:CDS | 50.0% | |
| CAATAGCTGCACGTCAAGGA+TGG | + | chr3.1:78122694-78122713 | MS.gene06286:CDS | 50.0% | |
| CCAGGCTCTGTCACAATGAA+TGG | - | chr3.1:78121789-78121808 | None:intergenic | 50.0% | |
| CCATTCATTGTGACAGAGCC+TGG | + | chr3.1:78121786-78121805 | MS.gene06286:CDS | 50.0% | |
| CCCAACGAAAAATCTGCGAG+AGG | - | chr3.1:78121068-78121087 | None:intergenic | 50.0% | |
| CGGCATCAAAGCTGCCATTA+GGG | + | chr3.1:78121110-78121129 | MS.gene06286:CDS | 50.0% | |
| CGTCACCTTATTACCCAGCA+AGG | + | chr3.1:78120896-78120915 | MS.gene06286:CDS | 50.0% | |
| CGTGCAGCTATTGCTACAAG+TGG | - | chr3.1:78122687-78122706 | None:intergenic | 50.0% | |
| CTTGACGCTCTCTCTCAAGA+AGG | + | chr3.1:78121204-78121223 | MS.gene06286:CDS | 50.0% | |
| GACTGCGTAGTCGAGAAGTT+GGG | - | chr3.1:78120860-78120879 | None:intergenic | 50.0% | |
| GTAGCAATAGCTGCACGTCA+AGG | + | chr3.1:78122690-78122709 | MS.gene06286:CDS | 50.0% | |
| GTGTTCGGATGAACGTGTCA+CGG | - | chr3.1:78122137-78122156 | None:intergenic | 50.0% | |
| TATCACCAGAGAGAAGACCC+CGG | - | chr3.1:78121173-78121192 | None:intergenic | 50.0% | |
| TCCAACCCTCCAAGTTCTCT+TGG | - | chr3.1:78120925-78120944 | None:intergenic | 50.0% | |
| TGACTGCGTAGTCGAGAAGT+TGG | - | chr3.1:78120861-78120880 | None:intergenic | 50.0% | |
| TTAAGGTTTGTCGGAGGAGC+CGG | + | chr3.1:78121560-78121579 | MS.gene06286:intron | 50.0% | |
| ! | ATGAAGGGGACTGGTGATCA+TGG | + | chr3.1:78121693-78121712 | MS.gene06286:CDS | 50.0% |
| ! | GCCTCTCGCAGATTTTTCGT+TGG | + | chr3.1:78121064-78121083 | MS.gene06286:CDS | 50.0% |
| ! | GTCAGCTTTGTCATGCTGAG+AGG | + | chr3.1:78122781-78122800 | MS.gene06286:CDS | 50.0% |
| !! | TAAGGTGACGGAGCAGTTGA+AGG | - | chr3.1:78120886-78120905 | None:intergenic | 50.0% |
| ACGGAGACGCCTTGATGAAG+AGG | + | chr3.1:78121137-78121156 | MS.gene06286:CDS | 55.0% | |
| ATGGGGAGGTGGAACCCATT+AGG | - | chr3.1:78122179-78122198 | None:intergenic | 55.0% | |
| CACCGCCAGCCTATTCAAGT+GGG | + | chr3.1:78120795-78120814 | MS.gene06286:CDS | 55.0% | |
| CGGAGAGAAATGCCCTACCA+AGG | + | chr3.1:78121911-78121930 | MS.gene06286:CDS | 55.0% | |
| CGTAGTCGAGAAGTTGGGGA+CGG | - | chr3.1:78120855-78120874 | None:intergenic | 55.0% | |
| CTCTCCGCGTTCCTTAGCAA+TGG | - | chr3.1:78121898-78121917 | None:intergenic | 55.0% | |
| GAACCCATTAGGAGAGTCCC+TGG | - | chr3.1:78122168-78122187 | None:intergenic | 55.0% | |
| GACCCAGGGACTCTCCTAAT+GGG | + | chr3.1:78122162-78122181 | MS.gene06286:intron | 55.0% | |
| GAGGAGAGAACGTTGGTGCA+TGG | + | chr3.1:78122643-78122662 | MS.gene06286:CDS | 55.0% | |
| GCTTCAAGCTCCGTCTCTGT+TGG | + | chr3.1:78122816-78122835 | MS.gene06286:CDS | 55.0% | |
| GTCCCACTTGAATAGGCTGG+CGG | - | chr3.1:78120800-78120819 | None:intergenic | 55.0% | |
| GTGGGCAGTTCCAACAGAGA+CGG | - | chr3.1:78122829-78122848 | None:intergenic | 55.0% | |
| TCACCGCCAGCCTATTCAAG+TGG | + | chr3.1:78120794-78120813 | MS.gene06286:CDS | 55.0% | |
| TCCTTCTCTCGCTGTACCAC+CGG | - | chr3.1:78121582-78121601 | None:intergenic | 55.0% | |
| TGCGTGGGTCCCACTTGAAT+AGG | - | chr3.1:78120807-78120826 | None:intergenic | 55.0% | |
| TGGGTCCCACTTGAATAGGC+TGG | - | chr3.1:78120803-78120822 | None:intergenic | 55.0% | |
| TTCCACCTCCCCATTCCACT+GGG | + | chr3.1:78122185-78122204 | MS.gene06286:intron | 55.0% | |
| ! | AGGTGGAGCTGTTGGTAGGA+CGG | - | chr3.1:78120830-78120849 | None:intergenic | 55.0% |
| ! | GAGCACGTTGGTGGACATGA+AGG | + | chr3.1:78121014-78121033 | MS.gene06286:CDS | 55.0% |
| !! | AAGCGGAGGAGGGAGTACTT+GGG | + | chr3.1:78121611-78121630 | MS.gene06286:CDS | 55.0% |
| !! | AGAGAGAGCGTCAAGAGCGT+TGG | - | chr3.1:78121199-78121218 | None:intergenic | 55.0% |
| AAACGCCGGGGTCTTCTCTC+TGG | + | chr3.1:78121165-78121184 | MS.gene06286:CDS | 60.0% | |
| AGAAGTTGGGGACGGAGAGG+TGG | - | chr3.1:78120847-78120866 | None:intergenic | 60.0% | |
| ATCCCAGTGGAATGGGGAGG+TGG | - | chr3.1:78122190-78122209 | None:intergenic | 60.0% | |
| ATCCGAACACGTGACGACCC+AGG | + | chr3.1:78122147-78122166 | MS.gene06286:intron | 60.0% | |
| CGACCCAGGGACTCTCCTAA+TGG | + | chr3.1:78122161-78122180 | MS.gene06286:intron | 60.0% | |
| GAGTACTTGGGAGGTAGCCG+TGG | + | chr3.1:78121623-78121642 | MS.gene06286:CDS | 60.0% | |
| GCGGCGAAGATAGCAGAGCT+TGG | + | chr3.1:78120982-78121001 | MS.gene06286:CDS | 60.0% | |
| GCGTCTCCGTTCAGCCCTAA+TGG | - | chr3.1:78121127-78121146 | None:intergenic | 60.0% | |
| GGAGAGGTGGAGCTGTTGGT+AGG | - | chr3.1:78120834-78120853 | None:intergenic | 60.0% | |
| GGTACAGCGAGAGAAGGAGG+CGG | + | chr3.1:78121584-78121603 | MS.gene06286:CDS | 60.0% | |
| GGTGGTACAGCGAGAGAAGG+AGG | + | chr3.1:78121581-78121600 | MS.gene06286:CDS | 60.0% | |
| GTTCCACCTCCCCATTCCAC+TGG | + | chr3.1:78122184-78122203 | MS.gene06286:intron | 60.0% | |
| TAGGCTGGCGGTGAATGCGT+CGG | - | chr3.1:78120788-78120807 | None:intergenic | 60.0% | |
| TCCCTGGGTCGTCACGTGTT+CGG | - | chr3.1:78122152-78122171 | None:intergenic | 60.0% | |
| TCCGAACACGTGACGACCCA+GGG | + | chr3.1:78122148-78122167 | MS.gene06286:intron | 60.0% | |
| TCGAGAAGTTGGGGACGGAG+AGG | - | chr3.1:78120850-78120869 | None:intergenic | 60.0% | |
| TTGCCACGTGCAACTTCCCC+AGG | - | chr3.1:78121807-78121826 | None:intergenic | 60.0% | |
| TTGGGAGGTAGCCGTGGTAG+AGG | + | chr3.1:78121629-78121648 | MS.gene06286:CDS | 60.0% | |
| ! | CTGTTGGTAGGACGGTGCGT+GGG | - | chr3.1:78120822-78120841 | None:intergenic | 60.0% |
| !! | GAAGCGGAGGAGGGAGTACT+TGG | + | chr3.1:78121610-78121629 | MS.gene06286:CDS | 60.0% |
| !! | GAGAGCGTCAAGAGCGTTGG+TGG | - | chr3.1:78121196-78121215 | None:intergenic | 60.0% |
| ACAGCGAGAGAAGGAGGCGG+TGG | + | chr3.1:78121587-78121606 | MS.gene06286:CDS | 65.0% | |
| AGGCTGGCGGTGAATGCGTC+GGG | - | chr3.1:78120787-78120806 | None:intergenic | 65.0% | |
| AGGTTTGTCGGAGGAGCCGG+TGG | + | chr3.1:78121563-78121582 | MS.gene06286:intron | 65.0% | |
| CAGCGAGAGAAGGAGGCGGT+GGG | + | chr3.1:78121588-78121607 | MS.gene06286:CDS | 65.0% | |
| GAGAAGGAGGCGGTGGGAAG+CGG | + | chr3.1:78121594-78121613 | MS.gene06286:CDS | 65.0% | |
| GAGCCTGGGGAAGTTGCACG+TGG | + | chr3.1:78121801-78121820 | MS.gene06286:CDS | 65.0% | |
| GCCGGTGGTACAGCGAGAGA+AGG | + | chr3.1:78121578-78121597 | MS.gene06286:CDS | 65.0% | |
| GGACGGAGAGGTGGAGCTGT+TGG | - | chr3.1:78120838-78120857 | None:intergenic | 65.0% | |
| ! | GCTGTTGGTAGGACGGTGCG+TGG | - | chr3.1:78120823-78120842 | None:intergenic | 65.0% |
| !! | CGGAGGAGGGAGTACTTGGG+AGG | + | chr3.1:78121614-78121633 | MS.gene06286:CDS | 65.0% |
| AAGGAGGCGGTGGGAAGCGG+AGG | + | chr3.1:78121597-78121616 | MS.gene06286:CDS | 70.0% | |
| AGGCGGTGGGAAGCGGAGGA+GGG | + | chr3.1:78121601-78121620 | MS.gene06286:CDS | 70.0% | |
| GAGGCGGTGGGAAGCGGAGG+AGG | + | chr3.1:78121600-78121619 | MS.gene06286:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 78120778 | 78122860 | 78120778 | ID=MS.gene06286 |
| chr3.1 | mRNA | 78120778 | 78122860 | 78120778 | ID=MS.gene06286.t1;Parent=MS.gene06286 |
| chr3.1 | exon | 78120778 | 78121225 | 78120778 | ID=MS.gene06286.t1.exon1;Parent=MS.gene06286.t1 |
| chr3.1 | CDS | 78120778 | 78121225 | 78120778 | ID=cds.MS.gene06286.t1;Parent=MS.gene06286.t1 |
| chr3.1 | exon | 78121565 | 78121932 | 78121565 | ID=MS.gene06286.t1.exon2;Parent=MS.gene06286.t1 |
| chr3.1 | CDS | 78121565 | 78121932 | 78121565 | ID=cds.MS.gene06286.t1;Parent=MS.gene06286.t1 |
| chr3.1 | exon | 78122498 | 78122860 | 78122498 | ID=MS.gene06286.t1.exon3;Parent=MS.gene06286.t1 |
| chr3.1 | CDS | 78122498 | 78122860 | 78122498 | ID=cds.MS.gene06286.t1;Parent=MS.gene06286.t1 |
| Gene Sequence |
| Protein sequence |
