Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049214.t1 | XP_013461622.1 | 91 | 586 | 40 | 2 | 1 | 586 | 1 | 573 | 2.80E-216 | 761.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049214.t1 | Q9M0R2 | 65.7 | 341 | 110 | 3 | 247 | 582 | 326 | 664 | 3.4e-130 | 466.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049214.t1 | A0A072V1D5 | 91.0 | 586 | 40 | 2 | 1 | 586 | 1 | 573 | 2.0e-216 | 761.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049214 | MS.gene06329 | 0.96932 | 5.99E-130 | -1.69E-46 |
| MS.gene049214 | MS.gene25226 | 0.814415 | 1.56E-51 | -1.69E-46 |
| MS.gene049214 | MS.gene40961 | 0.994714 | 1.44E-209 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049214.t1 | MTR_3g097350 | 91.186 | 590 | 31 | 7 | 1 | 586 | 1 | 573 | 0.0 | 1003 |
| MS.gene049214.t1 | MTR_8g095360 | 70.876 | 491 | 119 | 10 | 112 | 586 | 21 | 503 | 0.0 | 668 |
| MS.gene049214.t1 | MTR_4g033435 | 68.475 | 387 | 117 | 4 | 199 | 582 | 208 | 592 | 0.0 | 546 |
| MS.gene049214.t1 | MTR_2g031610 | 54.913 | 346 | 146 | 6 | 245 | 583 | 124 | 466 | 8.92e-134 | 399 |
| MS.gene049214.t1 | MTR_4g033435 | 69.380 | 258 | 76 | 3 | 199 | 455 | 208 | 463 | 7.96e-121 | 365 |
| MS.gene049214.t1 | MTR_4g013300 | 51.045 | 335 | 155 | 6 | 245 | 574 | 107 | 437 | 9.12e-114 | 347 |
| MS.gene049214.t1 | MTR_7g070480 | 48.555 | 346 | 167 | 8 | 247 | 586 | 84 | 424 | 2.66e-111 | 340 |
| MS.gene049214.t1 | MTR_1g069915 | 41.379 | 348 | 191 | 7 | 240 | 581 | 124 | 464 | 6.21e-91 | 288 |
| MS.gene049214.t1 | MTR_3g098530 | 30.476 | 210 | 132 | 4 | 260 | 469 | 67 | 262 | 1.45e-22 | 98.2 |
| MS.gene049214.t1 | MTR_8g096170 | 30.476 | 210 | 132 | 5 | 260 | 469 | 50 | 245 | 2.51e-18 | 85.5 |
| MS.gene049214.t1 | MTR_8g096180 | 30.000 | 210 | 133 | 5 | 260 | 469 | 47 | 242 | 3.37e-18 | 85.1 |
| MS.gene049214.t1 | MTR_8g096180 | 28.767 | 219 | 134 | 6 | 260 | 469 | 47 | 252 | 3.61e-15 | 76.3 |
| MS.gene049214.t1 | MTR_7g087500 | 28.112 | 249 | 150 | 9 | 235 | 474 | 16 | 244 | 5.32e-13 | 70.9 |
| MS.gene049214.t1 | MTR_3g117100 | 28.378 | 222 | 134 | 8 | 262 | 469 | 110 | 320 | 6.06e-12 | 68.9 |
| MS.gene049214.t1 | MTR_5g012460 | 27.948 | 229 | 140 | 8 | 263 | 477 | 116 | 333 | 2.46e-11 | 66.6 |
| MS.gene049214.t1 | MTR_4g070810 | 27.477 | 222 | 136 | 8 | 262 | 469 | 107 | 317 | 2.63e-11 | 67.0 |
| MS.gene049214.t1 | MTR_1g022480 | 27.727 | 220 | 138 | 8 | 262 | 469 | 112 | 322 | 5.82e-11 | 65.9 |
| MS.gene049214.t1 | MTR_1g022480 | 27.727 | 220 | 138 | 8 | 262 | 469 | 112 | 322 | 5.98e-11 | 65.9 |
| MS.gene049214.t1 | MTR_1g022480 | 27.727 | 220 | 138 | 8 | 262 | 469 | 112 | 322 | 7.60e-11 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049214.t1 | AT4G09160 | 64.571 | 350 | 117 | 3 | 238 | 582 | 317 | 664 | 1.41e-169 | 497 |
| MS.gene049214.t1 | AT4G09160 | 64.571 | 350 | 117 | 3 | 238 | 582 | 292 | 639 | 1.42e-169 | 496 |
| MS.gene049214.t1 | AT4G09160 | 64.571 | 350 | 117 | 3 | 238 | 582 | 292 | 639 | 1.75e-169 | 496 |
| MS.gene049214.t1 | AT1G72160 | 54.244 | 483 | 193 | 10 | 116 | 582 | 19 | 489 | 5.39e-168 | 487 |
| MS.gene049214.t1 | AT1G22530 | 43.570 | 661 | 256 | 14 | 14 | 581 | 12 | 648 | 1.28e-150 | 448 |
| MS.gene049214.t1 | AT1G72150 | 51.606 | 498 | 220 | 10 | 90 | 581 | 91 | 573 | 2.70e-149 | 442 |
| MS.gene049214.t1 | AT1G22530 | 54.780 | 387 | 157 | 5 | 196 | 581 | 313 | 682 | 4.05e-144 | 432 |
| MS.gene049214.t1 | AT1G30690 | 41.455 | 550 | 267 | 16 | 51 | 585 | 30 | 539 | 3.30e-123 | 374 |
| MS.gene049214.t1 | AT1G30690 | 41.455 | 550 | 267 | 16 | 51 | 585 | 30 | 539 | 3.30e-123 | 374 |
| MS.gene049214.t1 | AT3G51670 | 46.174 | 379 | 193 | 8 | 213 | 585 | 34 | 407 | 6.44e-113 | 343 |
| MS.gene049214.t1 | AT1G01630 | 30.000 | 210 | 133 | 5 | 260 | 469 | 50 | 245 | 2.18e-19 | 88.6 |
| MS.gene049214.t1 | AT4G08690 | 26.721 | 247 | 159 | 7 | 237 | 478 | 17 | 246 | 1.76e-14 | 75.1 |
| MS.gene049214.t1 | AT4G08690 | 26.721 | 247 | 159 | 7 | 237 | 478 | 17 | 246 | 1.76e-14 | 75.1 |
| MS.gene049214.t1 | AT4G08690 | 26.721 | 247 | 159 | 7 | 237 | 478 | 17 | 246 | 1.76e-14 | 75.1 |
| MS.gene049214.t1 | AT3G24840 | 25.574 | 305 | 199 | 10 | 191 | 477 | 27 | 321 | 1.20e-12 | 71.2 |
| MS.gene049214.t1 | AT3G24840 | 25.574 | 305 | 199 | 10 | 191 | 477 | 27 | 321 | 1.20e-12 | 71.2 |
| MS.gene049214.t1 | AT3G24840 | 25.574 | 305 | 199 | 10 | 191 | 477 | 27 | 321 | 1.20e-12 | 71.2 |
| MS.gene049214.t1 | AT3G24840 | 25.574 | 305 | 199 | 10 | 191 | 477 | 27 | 321 | 1.20e-12 | 71.2 |
| MS.gene049214.t1 | AT3G24840 | 25.574 | 305 | 199 | 10 | 191 | 477 | 27 | 321 | 1.31e-12 | 70.9 |
| MS.gene049214.t1 | AT3G24840 | 25.574 | 305 | 199 | 10 | 191 | 477 | 27 | 321 | 1.31e-12 | 70.9 |
| MS.gene049214.t1 | AT3G24840 | 25.574 | 305 | 199 | 10 | 191 | 477 | 27 | 321 | 1.31e-12 | 70.9 |
| MS.gene049214.t1 | AT4G34580 | 26.606 | 218 | 143 | 6 | 262 | 469 | 88 | 298 | 6.90e-12 | 68.6 |
| MS.gene049214.t1 | AT4G34580 | 26.606 | 218 | 143 | 6 | 262 | 469 | 88 | 298 | 6.90e-12 | 68.6 |
| MS.gene049214.t1 | AT1G19650 | 28.829 | 222 | 133 | 7 | 262 | 469 | 104 | 314 | 7.34e-12 | 68.6 |
| MS.gene049214.t1 | AT2G21540 | 28.511 | 235 | 137 | 11 | 251 | 469 | 86 | 305 | 1.16e-11 | 67.8 |
| MS.gene049214.t1 | AT2G21540 | 28.511 | 235 | 137 | 11 | 251 | 469 | 86 | 305 | 1.16e-11 | 67.8 |
| MS.gene049214.t1 | AT2G21540 | 28.511 | 235 | 137 | 11 | 251 | 469 | 86 | 305 | 1.16e-11 | 67.8 |
| MS.gene049214.t1 | AT2G21540 | 28.511 | 235 | 137 | 11 | 251 | 469 | 86 | 305 | 1.16e-11 | 67.8 |
| MS.gene049214.t1 | AT2G21540 | 28.571 | 224 | 131 | 10 | 262 | 469 | 95 | 305 | 1.31e-11 | 67.8 |
| MS.gene049214.t1 | AT2G21540 | 28.571 | 224 | 131 | 10 | 262 | 469 | 95 | 305 | 1.31e-11 | 67.8 |
| MS.gene049214.t1 | AT4G39170 | 29.148 | 223 | 131 | 9 | 262 | 469 | 108 | 318 | 1.87e-11 | 67.4 |
| MS.gene049214.t1 | AT2G18180 | 26.957 | 230 | 146 | 9 | 253 | 469 | 71 | 291 | 1.93e-11 | 67.4 |
| MS.gene049214.t1 | AT4G39170 | 29.148 | 223 | 131 | 9 | 262 | 469 | 108 | 318 | 1.97e-11 | 67.4 |
| MS.gene049214.t1 | AT4G39180 | 27.273 | 231 | 145 | 8 | 251 | 469 | 87 | 306 | 3.00e-11 | 66.6 |
| MS.gene049214.t1 | AT4G39180 | 27.273 | 231 | 145 | 8 | 251 | 469 | 87 | 306 | 3.00e-11 | 66.6 |
| MS.gene049214.t1 | AT2G18180 | 26.957 | 230 | 146 | 9 | 253 | 469 | 71 | 291 | 3.03e-11 | 66.6 |
| MS.gene049214.t1 | AT4G39180 | 26.866 | 268 | 168 | 10 | 215 | 469 | 54 | 306 | 3.09e-11 | 66.6 |
| MS.gene049214.t1 | AT1G22180 | 25.896 | 251 | 161 | 6 | 235 | 478 | 18 | 250 | 3.26e-11 | 65.1 |
| MS.gene049214.t1 | AT1G22180 | 25.896 | 251 | 161 | 6 | 235 | 478 | 18 | 250 | 3.26e-11 | 65.1 |
| MS.gene049214.t1 | AT1G75170 | 24.889 | 225 | 128 | 6 | 259 | 469 | 43 | 240 | 5.17e-11 | 64.3 |
| MS.gene049214.t1 | AT1G75170 | 24.889 | 225 | 128 | 6 | 259 | 469 | 43 | 240 | 5.17e-11 | 64.3 |
| MS.gene049214.t1 | AT1G19650 | 28.829 | 222 | 133 | 7 | 262 | 469 | 104 | 314 | 7.04e-11 | 65.1 |
Find 121 sgRNAs with CRISPR-Local
Find 184 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCGGGCTCTGGGTTGGGCT+TGG | 0.133515 | 3.3:-80562178 | None:intergenic |
| TCATGGGAGCTAAGAGTAAT+TGG | 0.180786 | 3.3:+80564529 | MS.gene049214:CDS |
| CCTGTTTGTTATAACATTTA+TGG | 0.191442 | 3.3:+80563017 | MS.gene049214:CDS |
| ACCTGTTTGGCTACAAATTC+AGG | 0.192401 | 3.3:-80563275 | None:intergenic |
| TGTGATTCTGCTTCTGCTTC+TGG | 0.205662 | 3.3:-80562447 | None:intergenic |
| CAAAATTGAAGAGTTATTAT+TGG | 0.213965 | 3.3:+80562926 | MS.gene049214:CDS |
| CTAAGCAAAGATGGTGAATT+TGG | 0.229951 | 3.3:+80563801 | MS.gene049214:CDS |
| TCTTGAGTTGTGGCTATCTT+TGG | 0.230004 | 3.3:-80562069 | None:intergenic |
| CTTTGCAACAACTACAAAAT+TGG | 0.236225 | 3.3:+80564655 | MS.gene049214:CDS |
| TCGGGCTCTGGGTTGGGCTT+GGG | 0.258053 | 3.3:-80562177 | None:intergenic |
| AAAAGCAAGTTTGTATTTGC+TGG | 0.284258 | 3.3:+80563607 | MS.gene049214:CDS |
| ACCAAATTCACCTCAGTAAC+TGG | 0.284996 | 3.3:-80563885 | None:intergenic |
| TTCTGCTTCTGGTGTGGGCT+CGG | 0.286758 | 3.3:-80562436 | None:intergenic |
| GTTCTTGAAATGGAGAATTC+TGG | 0.287184 | 3.3:+80563100 | MS.gene049214:CDS |
| GTTCTGTTCATCTTTCTTGT+TGG | 0.294746 | 3.3:-80562487 | None:intergenic |
| AGTGCTTTCTTCTCAGCTTC+AGG | 0.302927 | 3.3:-80562318 | None:intergenic |
| CCCCATATTGAAACCTCTTC+TGG | 0.316394 | 3.3:-80562780 | None:intergenic |
| TGGTCTTGGAGAAGAGTATT+AGG | 0.324429 | 3.3:+80563120 | MS.gene049214:CDS |
| AGAGAGAAAAGTTCTTGAAA+TGG | 0.327651 | 3.3:+80563090 | MS.gene049214:CDS |
| TCCACCACCTTTGGTTCCTC+TGG | 0.337500 | 3.3:-80562726 | None:intergenic |
| CCATAAATGTTATAACAAAC+AGG | 0.338368 | 3.3:-80563017 | None:intergenic |
| TAGAAGAGTCTCAGCTGATT+TGG | 0.338628 | 3.3:-80563635 | None:intergenic |
| TTCTTTCACTTTGAAGTCTC+TGG | 0.352608 | 3.3:-80562859 | None:intergenic |
| TTCTTGTTGGTCTCTTCAGC+AGG | 0.368545 | 3.3:-80562474 | None:intergenic |
| GGAGAAGAGTATTAGGAAGT+TGG | 0.378620 | 3.3:+80563127 | MS.gene049214:CDS |
| GAAGAAGCTTCCACCACCTT+TGG | 0.382704 | 3.3:-80562735 | None:intergenic |
| AACCAGAAGAGGTTTCAATA+TGG | 0.384526 | 3.3:+80562778 | MS.gene049214:CDS |
| GAGCAACTTTCAGTCAAATA+TGG | 0.386432 | 3.3:+80563774 | MS.gene049214:CDS |
| AAGCAATTGAAGGGCTTGTT+TGG | 0.391690 | 3.3:-80563240 | None:intergenic |
| TCAGCTTCAGTTGTTGTTGT+TGG | 0.393012 | 3.3:-80562579 | None:intergenic |
| AATCAGCTGAGACTCTTCTA+AGG | 0.396379 | 3.3:+80563638 | MS.gene049214:CDS |
| CTTTCTTAATCAGAAGTTGA+AGG | 0.397210 | 3.3:-80564757 | None:intergenic |
| TCCTGAATTTGTAGCCAAAC+AGG | 0.397889 | 3.3:+80563274 | MS.gene049214:CDS |
| TCTGCTTCTGCTTCTGGTGT+GGG | 0.403305 | 3.3:-80562441 | None:intergenic |
| TCTGCTTCTGGTGTGGGCTC+GGG | 0.406078 | 3.3:-80562435 | None:intergenic |
| AACTACAAAATTGGTGAACC+TGG | 0.412559 | 3.3:+80564664 | MS.gene049214:CDS |
| CTTAGAGCTTGAATTGTCAA+TGG | 0.418583 | 3.3:-80564701 | None:intergenic |
| GTAAAGTATTAGTACCTGTT+TGG | 0.422219 | 3.3:-80563288 | None:intergenic |
| TTTGTTCTTTGTGTAAGAAA+AGG | 0.424626 | 3.3:-80563586 | None:intergenic |
| ACTTGCTCCTCCTCAGCAAC+AGG | 0.426842 | 3.3:-80562099 | None:intergenic |
| TTAATCAGAAGTTGAAGGCT+TGG | 0.430333 | 3.3:-80564752 | None:intergenic |
| GAGAAAACTGTTTACATGCA+TGG | 0.439519 | 3.3:+80562975 | MS.gene049214:CDS |
| TCAGTTGTTGTTGTTGGTAG+TGG | 0.442852 | 3.3:-80562573 | None:intergenic |
| TTCTGCTTCTGCTTCTGGTG+TGG | 0.443749 | 3.3:-80562442 | None:intergenic |
| ACTGGGCTTGGAGTAGTTGA+AGG | 0.447024 | 3.3:-80562399 | None:intergenic |
| TTCTTTGTCAGCTGGAACAG+TGG | 0.452483 | 3.3:-80562145 | None:intergenic |
| TCCAGAGTCTGGTTCGTTCA+AGG | 0.461611 | 3.3:+80562269 | MS.gene049214:CDS |
| AGCTTGTCTAAGCTCCCATT+TGG | 0.463609 | 3.3:-80563216 | None:intergenic |
| ACCAGAAGAGGTTTCAATAT+GGG | 0.467828 | 3.3:+80562779 | MS.gene049214:CDS |
| CATGGGAGCTAAGAGTAATT+GGG | 0.468056 | 3.3:+80564530 | MS.gene049214:CDS |
| AATTATCTTGAAGCAATTGA+AGG | 0.470059 | 3.3:-80563250 | None:intergenic |
| GAAATGGAGAATTCTGGTCT+TGG | 0.470951 | 3.3:+80563106 | MS.gene049214:CDS |
| ATTCTCCTGGACCTACCAAA+TGG | 0.471318 | 3.3:+80563201 | MS.gene049214:CDS |
| AATGATCTTAAGAATTCTCC+TGG | 0.479288 | 3.3:+80563188 | MS.gene049214:CDS |
| GTGTAGCTTCCTTCTGAACT+TGG | 0.481631 | 3.3:-80564583 | None:intergenic |
| AGCTCCCATTTGGTAGGTCC+AGG | 0.482236 | 3.3:-80563206 | None:intergenic |
| TTGTAGTTGTTGCAAAGCAC+TGG | 0.484047 | 3.3:-80564649 | None:intergenic |
| GGCAGTGCCTGTTGCTGAGG+AGG | 0.486650 | 3.3:+80562092 | MS.gene049214:CDS |
| TCATCAGATTCTTTGTCAGC+TGG | 0.490379 | 3.3:-80562153 | None:intergenic |
| TTATTATTGGATGAAAACTT+AGG | 0.493600 | 3.3:+80562939 | MS.gene049214:CDS |
| AAGGAAGAGAGCACTATTGT+TGG | 0.493837 | 3.3:+80562288 | MS.gene049214:CDS |
| TGCAGAACTGTCTACTCTCA+TGG | 0.494143 | 3.3:+80564512 | MS.gene049214:intron |
| AGATGAACAGAACAATGAAC+AGG | 0.499148 | 3.3:+80562497 | MS.gene049214:CDS |
| TGTCTAAGCTCCCATTTGGT+AGG | 0.502674 | 3.3:-80563212 | None:intergenic |
| TTCTCCTGGACCTACCAAAT+GGG | 0.508042 | 3.3:+80563202 | MS.gene049214:CDS |
| ATCAAAATCAACTATGGCTG+AGG | 0.520145 | 3.3:+80562041 | None:intergenic |
| TATGGTGGACTAAGCAAAGA+TGG | 0.520271 | 3.3:+80563792 | MS.gene049214:CDS |
| GCTTCTTCTGTAGATGAAGA+TGG | 0.521848 | 3.3:+80562648 | MS.gene049214:CDS |
| GTTGTTGTTGTTGGTAGTGG+TGG | 0.522925 | 3.3:-80562570 | None:intergenic |
| TCCTTGAACGAACCAGACTC+TGG | 0.528848 | 3.3:-80562270 | None:intergenic |
| ATGGTGAGAACCACTTTCCC+AGG | 0.529543 | 3.3:-80564682 | None:intergenic |
| ATATTTGACTGAAAGTTGCT+CGG | 0.532049 | 3.3:-80563772 | None:intergenic |
| TTGTTGGTCTCTTCAGCAGG+TGG | 0.536894 | 3.3:-80562471 | None:intergenic |
| AATTGGTGAACCTGGGAAAG+TGG | 0.538369 | 3.3:+80564672 | MS.gene049214:CDS |
| TCCAGAGGAACCAAAGGTGG+TGG | 0.538723 | 3.3:+80562725 | MS.gene049214:CDS |
| CCAGAAGAGGTTTCAATATG+GGG | 0.547282 | 3.3:+80562780 | MS.gene049214:CDS |
| GAGTTTGTACCAAGTTCAGA+AGG | 0.553555 | 3.3:+80564574 | MS.gene049214:CDS |
| ATTATCTTGAAGCAATTGAA+GGG | 0.556517 | 3.3:-80563249 | None:intergenic |
| TATTTGACTGAAAGTTGCTC+GGG | 0.559062 | 3.3:-80563771 | None:intergenic |
| ACAACAACAACAACCAGAAG+AGG | 0.568417 | 3.3:+80562767 | MS.gene049214:CDS |
| TTATGGAGAGTTTGATAACA+AGG | 0.578141 | 3.3:+80563034 | MS.gene049214:CDS |
| ATGCATGGATATGACAAAGA+AGG | 0.578689 | 3.3:+80562990 | MS.gene049214:CDS |
| AGAGGCAGTGCCTGTTGCTG+AGG | 0.578794 | 3.3:+80562089 | MS.gene049214:CDS |
| CTCAGTAACTGGAAATTCCA+CGG | 0.580825 | 3.3:-80563874 | None:intergenic |
| GTTCTATCGTCTGCAAGAAG+TGG | 0.593136 | 3.3:-80562807 | None:intergenic |
| AAAGATAGCCACAACTCAAG+AGG | 0.593760 | 3.3:+80562071 | MS.gene049214:CDS |
| GGTGGTGGAAGCTTCTTCAC+CGG | 0.595988 | 3.3:+80562740 | MS.gene049214:CDS |
| ACTGGGCTTTGATACCTCCT+CGG | 0.596592 | 3.3:-80562232 | None:intergenic |
| AGGCACTGCCTCTTGAGTTG+TGG | 0.597680 | 3.3:-80562079 | None:intergenic |
| ACTACAAAATTGGTGAACCT+GGG | 0.600044 | 3.3:+80564665 | MS.gene049214:CDS |
| TGATCAAGAACACTATCCGT+TGG | 0.601471 | 3.3:+80562892 | MS.gene049214:CDS |
| GCAGAACTGTCTACTCTCAT+GGG | 0.603658 | 3.3:+80564513 | MS.gene049214:intron |
| TGTTGCTGAGGAGGAGCAAG+TGG | 0.604048 | 3.3:+80562101 | MS.gene049214:CDS |
| ATTGGGTGGGACATAAGCTA+TGG | 0.608625 | 3.3:+80564547 | MS.gene049214:CDS |
| AGCAGAAAAGAAAGAAACAG+AGG | 0.609236 | 3.3:+80562620 | MS.gene049214:CDS |
| CAACTTTCAGTCAAATATGG+TGG | 0.612687 | 3.3:+80563777 | MS.gene049214:CDS |
| ATCAGTTCCAGAGGAACCAA+AGG | 0.614270 | 3.3:+80562719 | MS.gene049214:CDS |
| ACAATAGTGCAAATACCACC+AGG | 0.619339 | 3.3:-80563158 | None:intergenic |
| AAACAACACTGCTGAGACCG+AGG | 0.619853 | 3.3:+80562215 | MS.gene049214:CDS |
| GGGAGCTAAGAGTAATTGGG+TGG | 0.623613 | 3.3:+80564533 | MS.gene049214:CDS |
| AGTTCCAGAGGAACCAAAGG+TGG | 0.628144 | 3.3:+80562722 | MS.gene049214:CDS |
| CATAAATGTTATAACAAACA+GGG | 0.628980 | 3.3:-80563016 | None:intergenic |
| AGAGTCTCAGCTGATTTGGA+AGG | 0.633487 | 3.3:-80563631 | None:intergenic |
| TTGAAGGCTTGGTCTTCAAG+CGG | 0.637531 | 3.3:-80564741 | None:intergenic |
| AGGTGTTTATCAATGTGCCA+TGG | 0.641137 | 3.3:+80563533 | MS.gene049214:intron |
| TGGAGAGTTTGATAACAAGG+AGG | 0.651054 | 3.3:+80563037 | MS.gene049214:CDS |
| TGTAGCTTCATCAGTTCCAG+AGG | 0.651074 | 3.3:+80562710 | MS.gene049214:CDS |
| CAGAAGAGGTTTCAATATGG+GGG | 0.653215 | 3.3:+80562781 | MS.gene049214:CDS |
| CGTGGAATTTCCAGTTACTG+AGG | 0.660408 | 3.3:+80563875 | MS.gene049214:CDS |
| AGAAATTACAGTGAGGCCTG+CGG | 0.663813 | 3.3:+80563842 | MS.gene049214:CDS |
| GGAGCTAAGAGTAATTGGGT+GGG | 0.668364 | 3.3:+80564534 | MS.gene049214:CDS |
| TGCTGAGGAGGAGCAAGTGG+TGG | 0.671033 | 3.3:+80562104 | MS.gene049214:CDS |
| AATAGTGCAAATACCACCAG+GGG | 0.702016 | 3.3:-80563156 | None:intergenic |
| CAATAGTGCAAATACCACCA+GGG | 0.705753 | 3.3:-80563157 | None:intergenic |
| TGTTTATCAATGTGCCATGG+TGG | 0.706720 | 3.3:+80563536 | MS.gene049214:CDS |
| GGGCTTGGAGTAGTTGAAGG+TGG | 0.709064 | 3.3:-80562396 | None:intergenic |
| TTCACAGCTAAGTACCACCA+TGG | 0.716803 | 3.3:-80563550 | None:intergenic |
| GCCTGCGGCAAAACACACCG+TGG | 0.718457 | 3.3:+80563857 | MS.gene049214:CDS |
| CAACACTGCTGAGACCGAGG+AGG | 0.737926 | 3.3:+80562218 | MS.gene049214:CDS |
| CTGTTACAGAAATTACAGTG+AGG | 0.780489 | 3.3:+80563835 | MS.gene049214:CDS |
| GAGGAGGTATCAAAGCCCAG+TGG | 0.800821 | 3.3:+80562234 | MS.gene049214:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAATAGTATTATCTATTT+CGG | - | chr3.3:80564441-80564460 | None:intergenic | 10.0% |
| !!! | ATGTTTCTTTGATATTTTAA+AGG | + | chr3.3:80564405-80564424 | MS.gene049214:intron | 15.0% |
| !!! | TGTTTCTTTGATATTTTAAA+GGG | + | chr3.3:80564406-80564425 | MS.gene049214:intron | 15.0% |
| !!! | TTTATTTGATTTTGTTTTGT+AGG | + | chr3.3:80563513-80563532 | MS.gene049214:intron | 15.0% |
| !! | AAATTTAAGAACAACAATTG+TGG | - | chr3.3:80563423-80563442 | None:intergenic | 20.0% |
| !! | AAGGAATCATAAAATAAACA+TGG | + | chr3.3:80564126-80564145 | MS.gene049214:intron | 20.0% |
| !! | ACAAATTGTTGCATAAAATA+AGG | - | chr3.3:80564063-80564082 | None:intergenic | 20.0% |
| !! | CAAAATTGAAGAGTTATTAT+TGG | + | chr3.3:80562926-80562945 | MS.gene049214:CDS | 20.0% |
| !! | CATAAATGTTATAACAAACA+GGG | - | chr3.3:80563019-80563038 | None:intergenic | 20.0% |
| !! | TTATTATTGGATGAAAACTT+AGG | + | chr3.3:80562939-80562958 | MS.gene049214:CDS | 20.0% |
| !!! | ATGACACATTAATTTTTTGA+GGG | + | chr3.3:80564257-80564276 | MS.gene049214:intron | 20.0% |
| !!! | TAGTGTCTTAATTTGTTTTA+TGG | + | chr3.3:80563729-80563748 | MS.gene049214:intron | 20.0% |
| ! | AATATAAATATGAAGACCAG+AGG | - | chr3.3:80564014-80564033 | None:intergenic | 25.0% |
| ! | AATTAAGACACTAACAAACT+AGG | - | chr3.3:80563722-80563741 | None:intergenic | 25.0% |
| ! | AATTATCTTGAAGCAATTGA+AGG | - | chr3.3:80563253-80563272 | None:intergenic | 25.0% |
| ! | ATAAGGTAAACAAACAAAAG+AGG | - | chr3.3:80564046-80564065 | None:intergenic | 25.0% |
| ! | ATTATCTTGAAGCAATTGAA+GGG | - | chr3.3:80563252-80563271 | None:intergenic | 25.0% |
| ! | CCATAAATGTTATAACAAAC+AGG | - | chr3.3:80563020-80563039 | None:intergenic | 25.0% |
| ! | CTCAAAAAATTAATGTGTCA+TGG | - | chr3.3:80564258-80564277 | None:intergenic | 25.0% |
| ! | GCAATTAATATAACTGAAAC+TGG | - | chr3.3:80563331-80563350 | None:intergenic | 25.0% |
| ! | TAAACAAACAAAAGAGGAAA+AGG | - | chr3.3:80564040-80564059 | None:intergenic | 25.0% |
| ! | TTTGTTCTTTGTGTAAGAAA+AGG | - | chr3.3:80563589-80563608 | None:intergenic | 25.0% |
| !! | TTTTTAGATTGAGTATCCAA+GGG | + | chr3.3:80563952-80563971 | MS.gene049214:intron | 25.0% |
| !!! | CATGACACATTAATTTTTTG+AGG | + | chr3.3:80564256-80564275 | MS.gene049214:intron | 25.0% |
| !!! | CCTGTTTGTTATAACATTTA+TGG | + | chr3.3:80563017-80563036 | MS.gene049214:CDS | 25.0% |
| !!! | GCATTGAAATTTTTGTTGTT+GGG | + | chr3.3:80564482-80564501 | MS.gene049214:intron | 25.0% |
| !!! | TGCATTGAAATTTTTGTTGT+TGG | + | chr3.3:80564481-80564500 | MS.gene049214:intron | 25.0% |
| !!! | TTAATTTTTTGAGGGTTCAA+AGG | + | chr3.3:80564265-80564284 | MS.gene049214:intron | 25.0% |
| !!! | TTTTTTAGATTGAGTATCCA+AGG | + | chr3.3:80563951-80563970 | MS.gene049214:intron | 25.0% |
| AAAAGCAAGTTTGTATTTGC+TGG | + | chr3.3:80563607-80563626 | MS.gene049214:CDS | 30.0% | |
| AATGATCTTAAGAATTCTCC+TGG | + | chr3.3:80563188-80563207 | MS.gene049214:CDS | 30.0% | |
| AGAGAGAAAAGTTCTTGAAA+TGG | + | chr3.3:80563090-80563109 | MS.gene049214:CDS | 30.0% | |
| AGATACTAGATGCTTTATCA+AGG | + | chr3.3:80564107-80564126 | MS.gene049214:intron | 30.0% | |
| ATATTTGACTGAAAGTTGCT+CGG | - | chr3.3:80563775-80563794 | None:intergenic | 30.0% | |
| CTTTGCAACAACTACAAAAT+TGG | + | chr3.3:80564655-80564674 | MS.gene049214:CDS | 30.0% | |
| ! | GTAAAGTATTAGTACCTGTT+TGG | - | chr3.3:80563291-80563310 | None:intergenic | 30.0% |
| ! | GTCTATGATTTTGCTAAACT+TGG | - | chr3.3:80564334-80564353 | None:intergenic | 30.0% |
| ! | TTATGGAGAGTTTGATAACA+AGG | + | chr3.3:80563034-80563053 | MS.gene049214:CDS | 30.0% |
| ! | TTCTTTTCTGCTTCTTCTTT+TGG | - | chr3.3:80562612-80562631 | None:intergenic | 30.0% |
| ! | TTTTGAACTCTTTTCTCCAA+CGG | - | chr3.3:80562911-80562930 | None:intergenic | 30.0% |
| !! | AAGCAATTTTTCTAGTCTTC+TGG | - | chr3.3:80564618-80564637 | None:intergenic | 30.0% |
| !! | ATGGTCATTTTGTTAAGTCA+TGG | - | chr3.3:80564239-80564258 | None:intergenic | 30.0% |
| AACCAGAAGAGGTTTCAATA+TGG | + | chr3.3:80562778-80562797 | MS.gene049214:CDS | 35.0% | |
| AACTACAAAATTGGTGAACC+TGG | + | chr3.3:80564664-80564683 | MS.gene049214:CDS | 35.0% | |
| AATCCTGACAAAACACAGAA+AGG | - | chr3.3:80563925-80563944 | None:intergenic | 35.0% | |
| ACCAGAAGAGGTTTCAATAT+GGG | + | chr3.3:80562779-80562798 | MS.gene049214:CDS | 35.0% | |
| ACTACAAAATTGGTGAACCT+GGG | + | chr3.3:80564665-80564684 | MS.gene049214:CDS | 35.0% | |
| AGATGAACAGAACAATGAAC+AGG | + | chr3.3:80562497-80562516 | MS.gene049214:CDS | 35.0% | |
| AGCAGAAAAGAAAGAAACAG+AGG | + | chr3.3:80562620-80562639 | MS.gene049214:CDS | 35.0% | |
| ATCTAGTATCTCTCAAGTCA+GGG | - | chr3.3:80564098-80564117 | None:intergenic | 35.0% | |
| ATGCATGGATATGACAAAGA+AGG | + | chr3.3:80562990-80563009 | MS.gene049214:CDS | 35.0% | |
| CAACTTTCAGTCAAATATGG+TGG | + | chr3.3:80563777-80563796 | MS.gene049214:CDS | 35.0% | |
| CTAAGCAAAGATGGTGAATT+TGG | + | chr3.3:80563801-80563820 | MS.gene049214:CDS | 35.0% | |
| CTGATACCACTAAATAGATG+CGG | + | chr3.3:80563397-80563416 | MS.gene049214:intron | 35.0% | |
| CTGTTACAGAAATTACAGTG+AGG | + | chr3.3:80563835-80563854 | MS.gene049214:CDS | 35.0% | |
| CTTAGAGCTTGAATTGTCAA+TGG | - | chr3.3:80564704-80564723 | None:intergenic | 35.0% | |
| GAGAAAACTGTTTACATGCA+TGG | + | chr3.3:80562975-80562994 | MS.gene049214:CDS | 35.0% | |
| GAGCAACTTTCAGTCAAATA+TGG | + | chr3.3:80563774-80563793 | MS.gene049214:CDS | 35.0% | |
| GATGAAAAAATTCCAGAGTC+TGG | + | chr3.3:80562258-80562277 | MS.gene049214:CDS | 35.0% | |
| GGAAACAGACATACTTCAAT+TGG | + | chr3.3:80564147-80564166 | MS.gene049214:intron | 35.0% | |
| GTTCTGTTCATCTTTCTTGT+TGG | - | chr3.3:80562490-80562509 | None:intergenic | 35.0% | |
| GTTCTTGAAATGGAGAATTC+TGG | + | chr3.3:80563100-80563119 | MS.gene049214:CDS | 35.0% | |
| TATTTGACTGAAAGTTGCTC+GGG | - | chr3.3:80563774-80563793 | None:intergenic | 35.0% | |
| TGGATTGTGTAATCTTTCCT+AGG | + | chr3.3:80563985-80564004 | MS.gene049214:intron | 35.0% | |
| TTAATCAGAAGTTGAAGGCT+TGG | - | chr3.3:80564755-80564774 | None:intergenic | 35.0% | |
| ! | TGGCATTGTCATTGTGATTT+TGG | - | chr3.3:80564301-80564320 | None:intergenic | 35.0% |
| ! | TGTGTTTTGTCAGGATTGAT+TGG | + | chr3.3:80563928-80563947 | MS.gene049214:intron | 35.0% |
| ! | TTACCTTTCTGTGTTTTGTC+AGG | + | chr3.3:80563919-80563938 | MS.gene049214:intron | 35.0% |
| ! | TTTTGTTCTTTAACTGGGCT+TGG | - | chr3.3:80562414-80562433 | None:intergenic | 35.0% |
| !! | TTCTTTCACTTTGAAGTCTC+TGG | - | chr3.3:80562862-80562881 | None:intergenic | 35.0% |
| !!! | GGAATTTTTTCATCACCACT+GGG | - | chr3.3:80562252-80562271 | None:intergenic | 35.0% |
| !!! | TGGAATTTTTTCATCACCAC+TGG | - | chr3.3:80562253-80562272 | None:intergenic | 35.0% |
| AAAGATAGCCACAACTCAAG+AGG | + | chr3.3:80562071-80562090 | MS.gene049214:CDS | 40.0% | |
| AATAGTGCAAATACCACCAG+GGG | - | chr3.3:80563159-80563178 | None:intergenic | 40.0% | |
| AATCAGCTGAGACTCTTCTA+AGG | + | chr3.3:80563638-80563657 | MS.gene049214:CDS | 40.0% | |
| AATCTTTCCTAGGATTCCTC+TGG | + | chr3.3:80563995-80564014 | MS.gene049214:intron | 40.0% | |
| AATGACAATGCCACGTGATT+TGG | + | chr3.3:80564308-80564327 | MS.gene049214:intron | 40.0% | |
| ACAACAACAACAACCAGAAG+AGG | + | chr3.3:80562767-80562786 | MS.gene049214:CDS | 40.0% | |
| ACAATAGTGCAAATACCACC+AGG | - | chr3.3:80563161-80563180 | None:intergenic | 40.0% | |
| ACCAAATTCACCTCAGTAAC+TGG | - | chr3.3:80563888-80563907 | None:intergenic | 40.0% | |
| ACCTGTTTGGCTACAAATTC+AGG | - | chr3.3:80563278-80563297 | None:intergenic | 40.0% | |
| AGGTGTTTATCAATGTGCCA+TGG | + | chr3.3:80563533-80563552 | MS.gene049214:intron | 40.0% | |
| CAATAGTGCAAATACCACCA+GGG | - | chr3.3:80563160-80563179 | None:intergenic | 40.0% | |
| CAGAAGAGGTTTCAATATGG+GGG | + | chr3.3:80562781-80562800 | MS.gene049214:CDS | 40.0% | |
| CATCTAGTATCTCTCAAGTC+AGG | - | chr3.3:80564099-80564118 | None:intergenic | 40.0% | |
| CATGGGAGCTAAGAGTAATT+GGG | + | chr3.3:80564530-80564549 | MS.gene049214:CDS | 40.0% | |
| CCAGAAGAGGTTTCAATATG+GGG | + | chr3.3:80562780-80562799 | MS.gene049214:CDS | 40.0% | |
| CGCATCTATTTAGTGGTATC+AGG | - | chr3.3:80563399-80563418 | None:intergenic | 40.0% | |
| CTCAGTAACTGGAAATTCCA+CGG | - | chr3.3:80563877-80563896 | None:intergenic | 40.0% | |
| GAAATGGAGAATTCTGGTCT+TGG | + | chr3.3:80563106-80563125 | MS.gene049214:CDS | 40.0% | |
| GAGTTTGTACCAAGTTCAGA+AGG | + | chr3.3:80564574-80564593 | MS.gene049214:CDS | 40.0% | |
| GCTTCTTCTGTAGATGAAGA+TGG | + | chr3.3:80562648-80562667 | MS.gene049214:CDS | 40.0% | |
| TAGAAGAGTCTCAGCTGATT+TGG | - | chr3.3:80563638-80563657 | None:intergenic | 40.0% | |
| TCATCAGATTCTTTGTCAGC+TGG | - | chr3.3:80562156-80562175 | None:intergenic | 40.0% | |
| TCATGGGAGCTAAGAGTAAT+TGG | + | chr3.3:80564529-80564548 | MS.gene049214:CDS | 40.0% | |
| TCCAGTTACTGAGGTGAATT+TGG | + | chr3.3:80563884-80563903 | MS.gene049214:intron | 40.0% | |
| TCCTGAATTTGTAGCCAAAC+AGG | + | chr3.3:80563274-80563293 | MS.gene049214:CDS | 40.0% | |
| TGATCAAGAACACTATCCGT+TGG | + | chr3.3:80562892-80562911 | MS.gene049214:CDS | 40.0% | |
| TGTTTATCAATGTGCCATGG+TGG | + | chr3.3:80563536-80563555 | MS.gene049214:CDS | 40.0% | |
| TTGTAGTTGTTGCAAAGCAC+TGG | - | chr3.3:80564652-80564671 | None:intergenic | 40.0% | |
| ! | AAGCAATTGAAGGGCTTGTT+TGG | - | chr3.3:80563243-80563262 | None:intergenic | 40.0% |
| ! | CGGGCTTTTGTTCTTTAACT+GGG | - | chr3.3:80562419-80562438 | None:intergenic | 40.0% |
| ! | GGTTGTTGTTGTTGTTGTTC+CGG | - | chr3.3:80562762-80562781 | None:intergenic | 40.0% |
| ! | TCAGCTTCAGTTGTTGTTGT+TGG | - | chr3.3:80562582-80562601 | None:intergenic | 40.0% |
| ! | TCAGTTGTTGTTGTTGGTAG+TGG | - | chr3.3:80562576-80562595 | None:intergenic | 40.0% |
| ! | TCGGGCTTTTGTTCTTTAAC+TGG | - | chr3.3:80562420-80562439 | None:intergenic | 40.0% |
| ! | TCTTGAGTTGTGGCTATCTT+TGG | - | chr3.3:80562072-80562091 | None:intergenic | 40.0% |
| ! | TGGAGAGTTTGATAACAAGG+AGG | + | chr3.3:80563037-80563056 | MS.gene049214:CDS | 40.0% |
| !! | AAGGAAGAGAGCACTATTGT+TGG | + | chr3.3:80562288-80562307 | MS.gene049214:CDS | 40.0% |
| !! | CTGAGACTCTTCTAAGGTAA+AGG | + | chr3.3:80563644-80563663 | MS.gene049214:intron | 40.0% |
| !! | GGAGAAGAGTATTAGGAAGT+TGG | + | chr3.3:80563127-80563146 | MS.gene049214:CDS | 40.0% |
| !! | GTTTTCAACGGGCTTTTTCT+CGG | - | chr3.3:80562199-80562218 | None:intergenic | 40.0% |
| !! | TATGGTGGACTAAGCAAAGA+TGG | + | chr3.3:80563792-80563811 | MS.gene049214:CDS | 40.0% |
| !! | TGGTCTTGGAGAAGAGTATT+AGG | + | chr3.3:80563120-80563139 | MS.gene049214:CDS | 40.0% |
| !! | TTTTCAACGGGCTTTTTCTC+GGG | - | chr3.3:80562198-80562217 | None:intergenic | 40.0% |
| !!! | CTCAGCAGTGTTGTTTTCAA+CGG | - | chr3.3:80562211-80562230 | None:intergenic | 40.0% |
| !!! | TCAGCAGTGTTGTTTTCAAC+GGG | - | chr3.3:80562210-80562229 | None:intergenic | 40.0% |
| AATCCAATGCAACGTTCCCT+TGG | - | chr3.3:80563971-80563990 | None:intergenic | 45.0% | |
| AATTGGTGAACCTGGGAAAG+TGG | + | chr3.3:80564672-80564691 | MS.gene049214:CDS | 45.0% | |
| AGAAATTACAGTGAGGCCTG+CGG | + | chr3.3:80563842-80563861 | MS.gene049214:CDS | 45.0% | |
| AGCTTGTCTAAGCTCCCATT+TGG | - | chr3.3:80563219-80563238 | None:intergenic | 45.0% | |
| AGTGCTTTCTTCTCAGCTTC+AGG | - | chr3.3:80562321-80562340 | None:intergenic | 45.0% | |
| ATCAGTTCCAGAGGAACCAA+AGG | + | chr3.3:80562719-80562738 | MS.gene049214:CDS | 45.0% | |
| ATGAAGACCAGAGGAATCCT+AGG | - | chr3.3:80564005-80564024 | None:intergenic | 45.0% | |
| ATTCTCCTGGACCTACCAAA+TGG | + | chr3.3:80563201-80563220 | MS.gene049214:CDS | 45.0% | |
| ATTGGGTGGGACATAAGCTA+TGG | + | chr3.3:80564547-80564566 | MS.gene049214:CDS | 45.0% | |
| CCCCATATTGAAACCTCTTC+TGG | - | chr3.3:80562783-80562802 | None:intergenic | 45.0% | |
| CGTGGAATTTCCAGTTACTG+AGG | + | chr3.3:80563875-80563894 | MS.gene049214:CDS | 45.0% | |
| CTAAACTTGGCCAAATCACG+TGG | - | chr3.3:80564321-80564340 | None:intergenic | 45.0% | |
| GCAGAACTGTCTACTCTCAT+GGG | + | chr3.3:80564513-80564532 | MS.gene049214:intron | 45.0% | |
| GGAGCTAAGAGTAATTGGGT+GGG | + | chr3.3:80564534-80564553 | MS.gene049214:CDS | 45.0% | |
| GTGTAGCTTCCTTCTGAACT+TGG | - | chr3.3:80564586-80564605 | None:intergenic | 45.0% | |
| GTTCTATCGTCTGCAAGAAG+TGG | - | chr3.3:80562810-80562829 | None:intergenic | 45.0% | |
| TATCCAAGGGAACGTTGCAT+TGG | + | chr3.3:80563965-80563984 | MS.gene049214:intron | 45.0% | |
| TATCTCTCAAGTCAGGGCAT+AGG | - | chr3.3:80564092-80564111 | None:intergenic | 45.0% | |
| TGCAGAACTGTCTACTCTCA+TGG | + | chr3.3:80564512-80564531 | MS.gene049214:intron | 45.0% | |
| TGTAGCTTCATCAGTTCCAG+AGG | + | chr3.3:80562710-80562729 | MS.gene049214:CDS | 45.0% | |
| TGTCTAAGCTCCCATTTGGT+AGG | - | chr3.3:80563215-80563234 | None:intergenic | 45.0% | |
| TGTGATTCTGCTTCTGCTTC+TGG | - | chr3.3:80562450-80562469 | None:intergenic | 45.0% | |
| TTCACAGCTAAGTACCACCA+TGG | - | chr3.3:80563553-80563572 | None:intergenic | 45.0% | |
| TTCTCCTGGACCTACCAAAT+GGG | + | chr3.3:80563202-80563221 | MS.gene049214:CDS | 45.0% | |
| TTCTTTGTCAGCTGGAACAG+TGG | - | chr3.3:80562148-80562167 | None:intergenic | 45.0% | |
| TTGTGGCCGCATCTATTTAG+TGG | - | chr3.3:80563406-80563425 | None:intergenic | 45.0% | |
| ! | AAGTTGGATTTTACCCCTGG+TGG | + | chr3.3:80563143-80563162 | MS.gene049214:CDS | 45.0% |
| ! | AGGAAGTTGGATTTTACCCC+TGG | + | chr3.3:80563140-80563159 | MS.gene049214:CDS | 45.0% |
| ! | TTCTTGTTGGTCTCTTCAGC+AGG | - | chr3.3:80562477-80562496 | None:intergenic | 45.0% |
| ! | TTGAAGGCTTGGTCTTCAAG+CGG | - | chr3.3:80564744-80564763 | None:intergenic | 45.0% |
| !! | AGAGTCTCAGCTGATTTGGA+AGG | - | chr3.3:80563634-80563653 | None:intergenic | 45.0% |
| !! | GTTGTTGTTGTTGGTAGTGG+TGG | - | chr3.3:80562573-80562592 | None:intergenic | 45.0% |
| AAACAACACTGCTGAGACCG+AGG | + | chr3.3:80562215-80562234 | MS.gene049214:CDS | 50.0% | |
| ACTGGGCTTGGAGTAGTTGA+AGG | - | chr3.3:80562402-80562421 | None:intergenic | 50.0% | |
| AGTTCCAGAGGAACCAAAGG+TGG | + | chr3.3:80562722-80562741 | MS.gene049214:CDS | 50.0% | |
| ATGGTGAGAACCACTTTCCC+AGG | - | chr3.3:80564685-80564704 | None:intergenic | 50.0% | |
| GAAGAAGCTTCCACCACCTT+TGG | - | chr3.3:80562738-80562757 | None:intergenic | 50.0% | |
| GGGAGCTAAGAGTAATTGGG+TGG | + | chr3.3:80564533-80564552 | MS.gene049214:CDS | 50.0% | |
| TCCTTGAACGAACCAGACTC+TGG | - | chr3.3:80562273-80562292 | None:intergenic | 50.0% | |
| TCTGCTTCTGCTTCTGGTGT+GGG | - | chr3.3:80562444-80562463 | None:intergenic | 50.0% | |
| TTCTGCTTCTGCTTCTGGTG+TGG | - | chr3.3:80562445-80562464 | None:intergenic | 50.0% | |
| ! | ACTGGGCTTTGATACCTCCT+CGG | - | chr3.3:80562235-80562254 | None:intergenic | 50.0% |
| ! | TCCAGAGTCTGGTTCGTTCA+AGG | + | chr3.3:80562269-80562288 | MS.gene049214:CDS | 50.0% |
| ! | TTGTTGGTCTCTTCAGCAGG+TGG | - | chr3.3:80562474-80562493 | None:intergenic | 50.0% |
| !!! | TTTTTCTCGGGCTCTGGGTT+GGG | - | chr3.3:80562186-80562205 | None:intergenic | 50.0% |
| ACTTGCTCCTCCTCAGCAAC+AGG | - | chr3.3:80562102-80562121 | None:intergenic | 55.0% | |
| AGCTCCCATTTGGTAGGTCC+AGG | - | chr3.3:80563209-80563228 | None:intergenic | 55.0% | |
| GGGCTTGGAGTAGTTGAAGG+TGG | - | chr3.3:80562399-80562418 | None:intergenic | 55.0% | |
| TCCAGAGGAACCAAAGGTGG+TGG | + | chr3.3:80562725-80562744 | MS.gene049214:CDS | 55.0% | |
| TGTTGCTGAGGAGGAGCAAG+TGG | + | chr3.3:80562101-80562120 | MS.gene049214:CDS | 55.0% | |
| TTCTGCTTCTGGTGTGGGCT+CGG | - | chr3.3:80562439-80562458 | None:intergenic | 55.0% | |
| ! | AGGCACTGCCTCTTGAGTTG+TGG | - | chr3.3:80562082-80562101 | None:intergenic | 55.0% |
| ! | TCCACCACCTTTGGTTCCTC+TGG | - | chr3.3:80562729-80562748 | None:intergenic | 55.0% |
| !! | GAGGAGGTATCAAAGCCCAG+TGG | + | chr3.3:80562234-80562253 | MS.gene049214:CDS | 55.0% |
| !! | GGTGGTGGAAGCTTCTTCAC+CGG | + | chr3.3:80562740-80562759 | MS.gene049214:CDS | 55.0% |
| !!! | CTTTTTCTCGGGCTCTGGGT+TGG | - | chr3.3:80562187-80562206 | None:intergenic | 55.0% |
| AGAGGCAGTGCCTGTTGCTG+AGG | + | chr3.3:80562089-80562108 | MS.gene049214:CDS | 60.0% | |
| CAACACTGCTGAGACCGAGG+AGG | + | chr3.3:80562218-80562237 | MS.gene049214:CDS | 60.0% | |
| TCTGCTTCTGGTGTGGGCTC+GGG | - | chr3.3:80562438-80562457 | None:intergenic | 60.0% | |
| TGCTGAGGAGGAGCAAGTGG+TGG | + | chr3.3:80562104-80562123 | MS.gene049214:CDS | 60.0% | |
| ! | TCCACGGTGTGTTTTGCCGC+AGG | - | chr3.3:80563861-80563880 | None:intergenic | 60.0% |
| !! | ACGGGCTTTTTCTCGGGCTC+TGG | - | chr3.3:80562192-80562211 | None:intergenic | 60.0% |
| !! | CGGGCTTTTTCTCGGGCTCT+GGG | - | chr3.3:80562191-80562210 | None:intergenic | 60.0% |
| GCCTGCGGCAAAACACACCG+TGG | + | chr3.3:80563857-80563876 | MS.gene049214:CDS | 65.0% | |
| GGCAGTGCCTGTTGCTGAGG+AGG | + | chr3.3:80562092-80562111 | MS.gene049214:CDS | 65.0% | |
| !! | TCGGGCTCTGGGTTGGGCTT+GGG | - | chr3.3:80562180-80562199 | None:intergenic | 65.0% |
| !! | CTCGGGCTCTGGGTTGGGCT+TGG | - | chr3.3:80562181-80562200 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 80562054 | 80564774 | 80562054 | ID=MS.gene049214 |
| chr3.3 | mRNA | 80562054 | 80564774 | 80562054 | ID=MS.gene049214.t1;Parent=MS.gene049214 |
| chr3.3 | exon | 80562054 | 80563295 | 80562054 | ID=MS.gene049214.t1.exon1;Parent=MS.gene049214.t1 |
| chr3.3 | CDS | 80562054 | 80563295 | 80562054 | ID=cds.MS.gene049214.t1;Parent=MS.gene049214.t1 |
| chr3.3 | exon | 80563535 | 80563659 | 80563535 | ID=MS.gene049214.t1.exon2;Parent=MS.gene049214.t1 |
| chr3.3 | CDS | 80563535 | 80563659 | 80563535 | ID=cds.MS.gene049214.t1;Parent=MS.gene049214.t1 |
| chr3.3 | exon | 80563761 | 80563896 | 80563761 | ID=MS.gene049214.t1.exon3;Parent=MS.gene049214.t1 |
| chr3.3 | CDS | 80563761 | 80563896 | 80563761 | ID=cds.MS.gene049214.t1;Parent=MS.gene049214.t1 |
| chr3.3 | exon | 80564517 | 80564774 | 80564517 | ID=MS.gene049214.t1.exon4;Parent=MS.gene049214.t1 |
| chr3.3 | CDS | 80564517 | 80564774 | 80564517 | ID=cds.MS.gene049214.t1;Parent=MS.gene049214.t1 |
| Gene Sequence |
| Protein sequence |
