Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06329.t1 | XP_013461622.1 | 89.7 | 584 | 49 | 2 | 1 | 584 | 1 | 573 | 2.00E-214 | 755.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06329.t1 | Q9M0R2 | 65.4 | 341 | 111 | 3 | 245 | 580 | 326 | 664 | 2.9e-129 | 463.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06329.t1 | A0A072V1D5 | 89.7 | 584 | 49 | 2 | 1 | 584 | 1 | 573 | 1.4e-214 | 755.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049214 | MS.gene06329 | 0.96932 | 5.99E-130 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06329.t1 | MTR_3g097350 | 90.986 | 588 | 34 | 7 | 1 | 584 | 1 | 573 | 0.0 | 998 |
| MS.gene06329.t1 | MTR_8g095360 | 70.325 | 492 | 117 | 10 | 115 | 584 | 19 | 503 | 0.0 | 665 |
| MS.gene06329.t1 | MTR_4g033435 | 68.217 | 387 | 118 | 4 | 197 | 580 | 208 | 592 | 0.0 | 545 |
| MS.gene06329.t1 | MTR_2g031610 | 54.913 | 346 | 146 | 6 | 243 | 581 | 124 | 466 | 1.03e-132 | 396 |
| MS.gene06329.t1 | MTR_4g033435 | 68.992 | 258 | 77 | 3 | 197 | 453 | 208 | 463 | 3.11e-120 | 363 |
| MS.gene06329.t1 | MTR_4g013300 | 51.045 | 335 | 155 | 6 | 243 | 572 | 107 | 437 | 8.98e-113 | 344 |
| MS.gene06329.t1 | MTR_7g070480 | 48.555 | 346 | 167 | 8 | 245 | 584 | 84 | 424 | 4.59e-110 | 337 |
| MS.gene06329.t1 | MTR_1g069915 | 34.310 | 478 | 289 | 10 | 111 | 579 | 3 | 464 | 1.44e-89 | 285 |
| MS.gene06329.t1 | MTR_3g098530 | 30.476 | 210 | 132 | 4 | 258 | 467 | 67 | 262 | 5.29e-22 | 96.7 |
| MS.gene06329.t1 | MTR_8g096170 | 30.476 | 210 | 132 | 5 | 258 | 467 | 50 | 245 | 2.13e-18 | 85.5 |
| MS.gene06329.t1 | MTR_8g096180 | 30.000 | 210 | 133 | 5 | 258 | 467 | 47 | 242 | 3.52e-18 | 85.1 |
| MS.gene06329.t1 | MTR_8g096180 | 28.767 | 219 | 134 | 6 | 258 | 467 | 47 | 252 | 3.46e-15 | 76.3 |
| MS.gene06329.t1 | MTR_7g087500 | 27.711 | 249 | 151 | 8 | 233 | 472 | 16 | 244 | 8.67e-14 | 73.2 |
| MS.gene06329.t1 | MTR_3g117100 | 28.326 | 233 | 140 | 9 | 249 | 467 | 101 | 320 | 3.93e-12 | 69.3 |
| MS.gene06329.t1 | MTR_4g070810 | 27.477 | 222 | 136 | 8 | 260 | 467 | 107 | 317 | 2.25e-11 | 67.0 |
| MS.gene06329.t1 | MTR_4g070790 | 25.664 | 226 | 135 | 6 | 260 | 467 | 84 | 294 | 7.77e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06329.t1 | AT4G09160 | 64.286 | 350 | 118 | 3 | 236 | 580 | 317 | 664 | 5.23e-168 | 493 |
| MS.gene06329.t1 | AT4G09160 | 64.286 | 350 | 118 | 3 | 236 | 580 | 292 | 639 | 7.66e-168 | 492 |
| MS.gene06329.t1 | AT4G09160 | 64.286 | 350 | 118 | 3 | 236 | 580 | 292 | 639 | 7.83e-168 | 492 |
| MS.gene06329.t1 | AT1G72160 | 63.687 | 358 | 123 | 3 | 228 | 580 | 134 | 489 | 9.28e-167 | 484 |
| MS.gene06329.t1 | AT1G72150 | 51.215 | 494 | 226 | 9 | 90 | 579 | 91 | 573 | 1.22e-149 | 443 |
| MS.gene06329.t1 | AT1G22530 | 54.780 | 387 | 157 | 5 | 194 | 579 | 313 | 682 | 1.44e-143 | 431 |
| MS.gene06329.t1 | AT1G22530 | 54.780 | 387 | 157 | 5 | 194 | 579 | 279 | 648 | 1.92e-143 | 430 |
| MS.gene06329.t1 | AT1G30690 | 41.273 | 550 | 266 | 16 | 51 | 583 | 30 | 539 | 1.43e-122 | 372 |
| MS.gene06329.t1 | AT1G30690 | 41.273 | 550 | 266 | 16 | 51 | 583 | 30 | 539 | 1.43e-122 | 372 |
| MS.gene06329.t1 | AT3G51670 | 46.174 | 379 | 193 | 8 | 211 | 583 | 34 | 407 | 7.40e-112 | 340 |
| MS.gene06329.t1 | AT1G01630 | 30.000 | 210 | 133 | 5 | 258 | 467 | 50 | 245 | 1.91e-19 | 88.6 |
| MS.gene06329.t1 | AT4G08690 | 26.721 | 247 | 159 | 7 | 235 | 476 | 17 | 246 | 9.40e-14 | 72.8 |
| MS.gene06329.t1 | AT4G08690 | 26.721 | 247 | 159 | 7 | 235 | 476 | 17 | 246 | 9.40e-14 | 72.8 |
| MS.gene06329.t1 | AT4G08690 | 26.721 | 247 | 159 | 7 | 235 | 476 | 17 | 246 | 9.40e-14 | 72.8 |
| MS.gene06329.t1 | AT3G24840 | 27.434 | 226 | 145 | 7 | 261 | 475 | 104 | 321 | 4.62e-12 | 69.3 |
| MS.gene06329.t1 | AT3G24840 | 27.434 | 226 | 145 | 7 | 261 | 475 | 104 | 321 | 4.62e-12 | 69.3 |
| MS.gene06329.t1 | AT3G24840 | 27.434 | 226 | 145 | 7 | 261 | 475 | 104 | 321 | 4.62e-12 | 69.3 |
| MS.gene06329.t1 | AT3G24840 | 27.434 | 226 | 145 | 7 | 261 | 475 | 104 | 321 | 4.86e-12 | 69.3 |
| MS.gene06329.t1 | AT3G24840 | 27.434 | 226 | 145 | 7 | 261 | 475 | 104 | 321 | 4.86e-12 | 69.3 |
| MS.gene06329.t1 | AT3G24840 | 27.434 | 226 | 145 | 7 | 261 | 475 | 104 | 321 | 4.86e-12 | 69.3 |
| MS.gene06329.t1 | AT3G24840 | 27.434 | 226 | 145 | 7 | 261 | 475 | 104 | 321 | 4.86e-12 | 69.3 |
| MS.gene06329.t1 | AT4G34580 | 26.638 | 229 | 149 | 7 | 249 | 467 | 79 | 298 | 5.01e-12 | 68.9 |
| MS.gene06329.t1 | AT4G34580 | 26.638 | 229 | 149 | 7 | 249 | 467 | 79 | 298 | 5.01e-12 | 68.9 |
| MS.gene06329.t1 | AT2G21540 | 28.571 | 224 | 131 | 10 | 260 | 467 | 95 | 305 | 1.27e-11 | 67.8 |
| MS.gene06329.t1 | AT2G21540 | 28.571 | 224 | 131 | 10 | 260 | 467 | 95 | 305 | 1.27e-11 | 67.8 |
| MS.gene06329.t1 | AT2G21540 | 28.571 | 224 | 131 | 10 | 260 | 467 | 95 | 305 | 1.27e-11 | 67.8 |
| MS.gene06329.t1 | AT2G21540 | 28.571 | 224 | 131 | 10 | 260 | 467 | 95 | 305 | 1.27e-11 | 67.8 |
| MS.gene06329.t1 | AT2G21540 | 28.571 | 224 | 131 | 10 | 260 | 467 | 95 | 305 | 1.36e-11 | 67.8 |
| MS.gene06329.t1 | AT2G21540 | 28.571 | 224 | 131 | 10 | 260 | 467 | 95 | 305 | 1.36e-11 | 67.8 |
| MS.gene06329.t1 | AT4G39170 | 29.148 | 223 | 131 | 9 | 260 | 467 | 108 | 318 | 2.04e-11 | 67.4 |
| MS.gene06329.t1 | AT4G39170 | 29.148 | 223 | 131 | 9 | 260 | 467 | 108 | 318 | 2.05e-11 | 67.4 |
| MS.gene06329.t1 | AT4G39180 | 27.273 | 220 | 139 | 7 | 260 | 467 | 96 | 306 | 2.62e-11 | 66.6 |
| MS.gene06329.t1 | AT4G39180 | 27.273 | 220 | 139 | 7 | 260 | 467 | 96 | 306 | 2.62e-11 | 66.6 |
| MS.gene06329.t1 | AT4G39180 | 27.273 | 220 | 139 | 7 | 260 | 467 | 96 | 306 | 3.07e-11 | 66.6 |
| MS.gene06329.t1 | AT1G22180 | 26.339 | 224 | 143 | 5 | 257 | 476 | 45 | 250 | 3.30e-11 | 65.1 |
| MS.gene06329.t1 | AT1G22180 | 26.339 | 224 | 143 | 5 | 257 | 476 | 45 | 250 | 3.30e-11 | 65.1 |
| MS.gene06329.t1 | AT2G18180 | 26.957 | 230 | 146 | 9 | 251 | 467 | 71 | 291 | 3.48e-11 | 66.2 |
| MS.gene06329.t1 | AT1G19650 | 28.378 | 222 | 134 | 7 | 260 | 467 | 104 | 314 | 3.87e-11 | 66.2 |
| MS.gene06329.t1 | AT2G18180 | 26.957 | 230 | 146 | 9 | 251 | 467 | 71 | 291 | 5.07e-11 | 65.9 |
Find 120 sgRNAs with CRISPR-Local
Find 183 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCGGGCTCTGGGTTGGGCT+TGG | 0.133515 | 3.1:-77642145 | None:intergenic |
| TCATGGGAGCTAAGAGTAAT+TGG | 0.180786 | 3.1:+77644489 | MS.gene06329:CDS |
| CCTGTTTGTTATAACATTTA+TGG | 0.191442 | 3.1:+77642978 | MS.gene06329:CDS |
| ACCTGTTTGGCTACAAATTC+AGG | 0.192401 | 3.1:-77643236 | None:intergenic |
| CAAAATTGAAGAGTTATTAT+TGG | 0.213965 | 3.1:+77642887 | MS.gene06329:CDS |
| CTAAGCAAAGATGGTGAATT+TGG | 0.229951 | 3.1:+77643762 | MS.gene06329:CDS |
| TCTTGAGTTGTGGCTATCTT+TGG | 0.230004 | 3.1:-77642036 | None:intergenic |
| CTTTGCAACAACTACAAAAT+TGG | 0.236225 | 3.1:+77644615 | MS.gene06329:CDS |
| TCGGGCTCTGGGTTGGGCTT+GGG | 0.258053 | 3.1:-77642144 | None:intergenic |
| TTCTGCTTCTGGTGTGGGCT+CGG | 0.273919 | 3.1:-77642403 | None:intergenic |
| GGTGGTTGTGATTCTGCTTC+TGG | 0.282279 | 3.1:-77642414 | None:intergenic |
| AAAAGCAAGTTTGTATTTGC+TGG | 0.284258 | 3.1:+77643568 | MS.gene06329:CDS |
| ACCAAATTCACCTCAGTAAC+TGG | 0.284996 | 3.1:-77643846 | None:intergenic |
| GTTCTGTTCATCTTTCTTGT+TGG | 0.294746 | 3.1:-77642448 | None:intergenic |
| AGTGCTTTCTTCTCAGCTTC+AGG | 0.302927 | 3.1:-77642285 | None:intergenic |
| GTTCTTGAAATGGAGAATTC+TGG | 0.303562 | 3.1:+77643061 | MS.gene06329:CDS |
| CCCCATATTGAAACCTCTTC+TGG | 0.316394 | 3.1:-77642741 | None:intergenic |
| TGGTCTTGGAGAAGAGTATT+AGG | 0.324429 | 3.1:+77643081 | MS.gene06329:CDS |
| AGAGAGTAAAGTTCTTGAAA+TGG | 0.332388 | 3.1:+77643051 | MS.gene06329:CDS |
| TCCACCACCTTTGGTTCCTC+TGG | 0.337500 | 3.1:-77642687 | None:intergenic |
| CCATAAATGTTATAACAAAC+AGG | 0.338368 | 3.1:-77642978 | None:intergenic |
| TAGAAGAGTCTCAGCTGATT+TGG | 0.338628 | 3.1:-77643596 | None:intergenic |
| TTCTTTCACTTTGAAGTCTC+TGG | 0.352608 | 3.1:-77642820 | None:intergenic |
| GAGCAACTTTCAGTCAAATA+TGG | 0.373495 | 3.1:+77643735 | MS.gene06329:CDS |
| GGAGAAGAGTATTAGGAAGT+TGG | 0.378620 | 3.1:+77643088 | MS.gene06329:CDS |
| GAAGAAGCTTCCACCACCTT+TGG | 0.382704 | 3.1:-77642696 | None:intergenic |
| AACCAGAAGAGGTTTCAATA+TGG | 0.384526 | 3.1:+77642739 | MS.gene06329:CDS |
| AAGCAATTGAAGGGCTTGTT+TGG | 0.391690 | 3.1:-77643201 | None:intergenic |
| TCAGCTTCAGTTGTTGTTGT+TGG | 0.393012 | 3.1:-77642540 | None:intergenic |
| AATCAGCTGAGACTCTTCTA+AGG | 0.396379 | 3.1:+77643599 | MS.gene06329:CDS |
| CTTTCTTAATCAGAAGTTGA+AGG | 0.397210 | 3.1:-77644717 | None:intergenic |
| TCCTGAATTTGTAGCCAAAC+AGG | 0.397889 | 3.1:+77643235 | MS.gene06329:CDS |
| TGTGATTCTGCTTCTGGTGT+GGG | 0.405719 | 3.1:-77642408 | None:intergenic |
| AACTACAAAATTGGTGAACC+TGG | 0.412559 | 3.1:+77644624 | MS.gene06329:CDS |
| CTTAGAGCTTGAATTGTCAA+TGG | 0.418583 | 3.1:-77644661 | None:intergenic |
| GTAAAGTATTAGTACCTGTT+TGG | 0.422219 | 3.1:-77643249 | None:intergenic |
| TTTGTTCTTTGTGTAAGAAA+AGG | 0.424626 | 3.1:-77643547 | None:intergenic |
| ACTTGCTCCTCCTCAGCAAC+AGG | 0.426842 | 3.1:-77642066 | None:intergenic |
| TTAATCAGAAGTTGAAGGCT+TGG | 0.430333 | 3.1:-77644712 | None:intergenic |
| TCTGCTTCTGGTGTGGGCTC+GGG | 0.439236 | 3.1:-77642402 | None:intergenic |
| GAGAAAACTGTTTACATGCA+TGG | 0.439519 | 3.1:+77642936 | MS.gene06329:CDS |
| TCAGTTGTTGTTGTTGGTAG+TGG | 0.442852 | 3.1:-77642534 | None:intergenic |
| ACTGGGCTTGGAGTAGTTGA+AGG | 0.447024 | 3.1:-77642366 | None:intergenic |
| TTCTTTGTCAGCTGGAACAG+TGG | 0.452483 | 3.1:-77642112 | None:intergenic |
| TTCTTGTTGGTCTCTTCAGA+AGG | 0.458072 | 3.1:-77642435 | None:intergenic |
| TCCAGAGTCTGGTTCGTTCA+AGG | 0.461611 | 3.1:+77642236 | MS.gene06329:CDS |
| AGCTTGTCTAAGCTCCCATT+TGG | 0.463609 | 3.1:-77643177 | None:intergenic |
| ACCAGAAGAGGTTTCAATAT+GGG | 0.467828 | 3.1:+77642740 | MS.gene06329:CDS |
| CATGGGAGCTAAGAGTAATT+GGG | 0.468056 | 3.1:+77644490 | MS.gene06329:CDS |
| AATTATCTTGAAGCAATTGA+AGG | 0.470059 | 3.1:-77643211 | None:intergenic |
| GAAATGGAGAATTCTGGTCT+TGG | 0.470951 | 3.1:+77643067 | MS.gene06329:CDS |
| ATTCTCCTGGACCTACCAAA+TGG | 0.471318 | 3.1:+77643162 | MS.gene06329:CDS |
| TTGTGATTCTGCTTCTGGTG+TGG | 0.474830 | 3.1:-77642409 | None:intergenic |
| AATGATCTTAAGAATTCTCC+TGG | 0.479288 | 3.1:+77643149 | MS.gene06329:CDS |
| GTGTAGCTTCCTTCTGAACT+TGG | 0.481631 | 3.1:-77644543 | None:intergenic |
| AGCTCCCATTTGGTAGGTCC+AGG | 0.482236 | 3.1:-77643167 | None:intergenic |
| TTGTAGTTGTTGCAAAGCAC+TGG | 0.484047 | 3.1:-77644609 | None:intergenic |
| GGCAGTGCCTGTTGCTGAGG+AGG | 0.486650 | 3.1:+77642059 | MS.gene06329:CDS |
| TCATCAGATTCTTTGTCAGC+TGG | 0.490379 | 3.1:-77642120 | None:intergenic |
| TTATTATTGGATGAAAACTT+AGG | 0.493600 | 3.1:+77642900 | MS.gene06329:CDS |
| AAGGAAGAGAGCACTATTGT+TGG | 0.493837 | 3.1:+77642255 | MS.gene06329:CDS |
| TGCAGAACTGTCTACTCTCA+TGG | 0.494143 | 3.1:+77644472 | MS.gene06329:intron |
| GCTTCTTCTGTAGACGAAGA+TGG | 0.497188 | 3.1:+77642609 | MS.gene06329:CDS |
| AGATGAACAGAACAATGAAC+AGG | 0.499148 | 3.1:+77642458 | MS.gene06329:CDS |
| TGTCTAAGCTCCCATTTGGT+AGG | 0.502674 | 3.1:-77643173 | None:intergenic |
| TTCTCCTGGACCTACCAAAT+GGG | 0.508042 | 3.1:+77643163 | MS.gene06329:CDS |
| TATTTGACTGAAAGTTGCTC+AGG | 0.515624 | 3.1:-77643732 | None:intergenic |
| ATCAAAATCAACTATGGCTG+AGG | 0.520145 | 3.1:+77642008 | None:intergenic |
| TATGGTGGACTAAGCAAAGA+TGG | 0.520271 | 3.1:+77643753 | MS.gene06329:CDS |
| GTTGTTGTTGTTGGTAGTGG+TGG | 0.522925 | 3.1:-77642531 | None:intergenic |
| TCCTTGAACGAACCAGACTC+TGG | 0.528848 | 3.1:-77642237 | None:intergenic |
| ATGGTGAGAACCACTTTCCC+AGG | 0.529543 | 3.1:-77644642 | None:intergenic |
| TTGTTGGTCTCTTCAGAAGG+TGG | 0.531361 | 3.1:-77642432 | None:intergenic |
| AATTGGTGAACCTGGGAAAG+TGG | 0.538369 | 3.1:+77644632 | MS.gene06329:CDS |
| TCCAGAGGAACCAAAGGTGG+TGG | 0.538723 | 3.1:+77642686 | MS.gene06329:CDS |
| CCAGAAGAGGTTTCAATATG+GGG | 0.547282 | 3.1:+77642741 | MS.gene06329:CDS |
| GAGTTTGTACCAAGTTCAGA+AGG | 0.553555 | 3.1:+77644534 | MS.gene06329:CDS |
| ATTATCTTGAAGCAATTGAA+GGG | 0.556517 | 3.1:-77643210 | None:intergenic |
| GTTCTATCGTCTACAAGAAG+TGG | 0.556868 | 3.1:-77642768 | None:intergenic |
| ACAACAACAACAACCAGAAG+AGG | 0.568417 | 3.1:+77642728 | MS.gene06329:CDS |
| TTATGGAGAGTTTGATAACA+AGG | 0.578141 | 3.1:+77642995 | MS.gene06329:CDS |
| ATGCATGGATATGACAAAGA+AGG | 0.578689 | 3.1:+77642951 | MS.gene06329:CDS |
| AGAGGCAGTGCCTGTTGCTG+AGG | 0.578794 | 3.1:+77642056 | MS.gene06329:CDS |
| CTCAGTAACTGGAAATTCCA+CGG | 0.580825 | 3.1:-77643835 | None:intergenic |
| AAAGATAGCCACAACTCAAG+AGG | 0.593760 | 3.1:+77642038 | MS.gene06329:CDS |
| GGTGGTGGAAGCTTCTTCAC+CGG | 0.595988 | 3.1:+77642701 | MS.gene06329:CDS |
| ACTGGGCTTTGATACCTCCT+CGG | 0.596592 | 3.1:-77642199 | None:intergenic |
| AGGCACTGCCTCTTGAGTTG+TGG | 0.597680 | 3.1:-77642046 | None:intergenic |
| ACTACAAAATTGGTGAACCT+GGG | 0.600044 | 3.1:+77644625 | MS.gene06329:CDS |
| TGATCAAGAACACTATCCGT+TGG | 0.601471 | 3.1:+77642853 | MS.gene06329:CDS |
| GCAGAACTGTCTACTCTCAT+GGG | 0.603658 | 3.1:+77644473 | MS.gene06329:intron |
| TGTTGCTGAGGAGGAGCAAG+TGG | 0.604048 | 3.1:+77642068 | MS.gene06329:CDS |
| ATTGGGTGGGACATAAGCTA+TGG | 0.608625 | 3.1:+77644507 | MS.gene06329:CDS |
| AGCAGAAAAGAAAGAAACAG+AGG | 0.609236 | 3.1:+77642581 | MS.gene06329:CDS |
| CAACTTTCAGTCAAATATGG+TGG | 0.612687 | 3.1:+77643738 | MS.gene06329:CDS |
| ATCAGTTCCAGAGGAACCAA+AGG | 0.614270 | 3.1:+77642680 | MS.gene06329:CDS |
| ACAATAGTGCAAATACCACC+AGG | 0.619339 | 3.1:-77643119 | None:intergenic |
| AAACAACACTGCTGAGACCG+AGG | 0.619853 | 3.1:+77642182 | MS.gene06329:CDS |
| GGGAGCTAAGAGTAATTGGG+TGG | 0.623613 | 3.1:+77644493 | MS.gene06329:CDS |
| AGTTCCAGAGGAACCAAAGG+TGG | 0.628144 | 3.1:+77642683 | MS.gene06329:CDS |
| CATAAATGTTATAACAAACA+GGG | 0.628980 | 3.1:-77642977 | None:intergenic |
| AGAGTCTCAGCTGATTTGGA+AGG | 0.633487 | 3.1:-77643592 | None:intergenic |
| TTGAAGGCTTGGTCTTCAAG+CGG | 0.637531 | 3.1:-77644701 | None:intergenic |
| AGGTGTTTATCAATGTGCCA+TGG | 0.641137 | 3.1:+77643494 | MS.gene06329:intron |
| TGGAGAGTTTGATAACAAGG+AGG | 0.651054 | 3.1:+77642998 | MS.gene06329:CDS |
| TGTAGCTTCATCAGTTCCAG+AGG | 0.651074 | 3.1:+77642671 | MS.gene06329:CDS |
| CAGAAGAGGTTTCAATATGG+GGG | 0.653215 | 3.1:+77642742 | MS.gene06329:CDS |
| CGTGGAATTTCCAGTTACTG+AGG | 0.660408 | 3.1:+77643836 | MS.gene06329:CDS |
| AGAAATTACAGTGAGGCCTG+CGG | 0.663813 | 3.1:+77643803 | MS.gene06329:CDS |
| GGAGCTAAGAGTAATTGGGT+GGG | 0.668364 | 3.1:+77644494 | MS.gene06329:CDS |
| TGCTGAGGAGGAGCAAGTGG+TGG | 0.671033 | 3.1:+77642071 | MS.gene06329:CDS |
| AATAGTGCAAATACCACCAG+GGG | 0.702016 | 3.1:-77643117 | None:intergenic |
| CAATAGTGCAAATACCACCA+GGG | 0.705753 | 3.1:-77643118 | None:intergenic |
| TGTTTATCAATGTGCCATGG+TGG | 0.706720 | 3.1:+77643497 | MS.gene06329:CDS |
| GGGCTTGGAGTAGTTGAAGG+TGG | 0.709064 | 3.1:-77642363 | None:intergenic |
| TTCACAGCTAAGTACCACCA+TGG | 0.716803 | 3.1:-77643511 | None:intergenic |
| GCCTGCGGCAAAACACACCG+TGG | 0.718457 | 3.1:+77643818 | MS.gene06329:CDS |
| CAACACTGCTGAGACCGAGG+AGG | 0.737926 | 3.1:+77642185 | MS.gene06329:CDS |
| CTGTTACAGAAATTACAGTG+AGG | 0.780489 | 3.1:+77643796 | MS.gene06329:CDS |
| GAGGAGGTATCAAAGCCCAG+TGG | 0.800821 | 3.1:+77642201 | MS.gene06329:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAATAGTATTATCTATTT+CGG | - | chr3.1:77644402-77644421 | None:intergenic | 10.0% |
| !!! | ATGTTTCTTTGATATTTTAA+AGG | + | chr3.1:77644366-77644385 | MS.gene06329:intron | 15.0% |
| !!! | TGTTTCTTTGATATTTTAAA+GGG | + | chr3.1:77644367-77644386 | MS.gene06329:intron | 15.0% |
| !!! | TTTATTTGATTTTGTTTTGT+AGG | + | chr3.1:77643474-77643493 | MS.gene06329:intron | 15.0% |
| !! | AAATTTAAGAACAACAATTG+TGG | - | chr3.1:77643384-77643403 | None:intergenic | 20.0% |
| !! | AAGGAATCATAAAATAAACA+TGG | + | chr3.1:77644087-77644106 | MS.gene06329:intron | 20.0% |
| !! | ACAAATTGTTGCATAAAATA+AGG | - | chr3.1:77644024-77644043 | None:intergenic | 20.0% |
| !! | CAAAATTGAAGAGTTATTAT+TGG | + | chr3.1:77642887-77642906 | MS.gene06329:CDS | 20.0% |
| !! | CATAAATGTTATAACAAACA+GGG | - | chr3.1:77642980-77642999 | None:intergenic | 20.0% |
| !! | TTATTATTGGATGAAAACTT+AGG | + | chr3.1:77642900-77642919 | MS.gene06329:CDS | 20.0% |
| !!! | ATGACACATTAATTTTTTGA+GGG | + | chr3.1:77644218-77644237 | MS.gene06329:intron | 20.0% |
| !!! | TAGTGTCTTAATTTGTTTTA+TGG | + | chr3.1:77643690-77643709 | MS.gene06329:intron | 20.0% |
| ! | AATATAAATATGAAGACCAG+AGG | - | chr3.1:77643975-77643994 | None:intergenic | 25.0% |
| ! | AATTAAGACACTAACAAACT+AGG | - | chr3.1:77643683-77643702 | None:intergenic | 25.0% |
| ! | AATTATCTTGAAGCAATTGA+AGG | - | chr3.1:77643214-77643233 | None:intergenic | 25.0% |
| ! | ATAAGGTAAACAAACAAAAG+AGG | - | chr3.1:77644007-77644026 | None:intergenic | 25.0% |
| ! | ATTATCTTGAAGCAATTGAA+GGG | - | chr3.1:77643213-77643232 | None:intergenic | 25.0% |
| ! | CCATAAATGTTATAACAAAC+AGG | - | chr3.1:77642981-77643000 | None:intergenic | 25.0% |
| ! | CTCAAAAAATTAATGTGTCA+TGG | - | chr3.1:77644219-77644238 | None:intergenic | 25.0% |
| ! | GCAATTAATATAACTGAAAC+TGG | - | chr3.1:77643292-77643311 | None:intergenic | 25.0% |
| ! | TAAACAAACAAAAGAGGAAA+AGG | - | chr3.1:77644001-77644020 | None:intergenic | 25.0% |
| ! | TTTGTTCTTTGTGTAAGAAA+AGG | - | chr3.1:77643550-77643569 | None:intergenic | 25.0% |
| !! | TTTTTAGATTGAGTATCCAA+GGG | + | chr3.1:77643913-77643932 | MS.gene06329:intron | 25.0% |
| !!! | ATGCATTGAAATTTTGTTGT+TGG | + | chr3.1:77644441-77644460 | MS.gene06329:intron | 25.0% |
| !!! | CATGACACATTAATTTTTTG+AGG | + | chr3.1:77644217-77644236 | MS.gene06329:intron | 25.0% |
| !!! | CCTGTTTGTTATAACATTTA+TGG | + | chr3.1:77642978-77642997 | MS.gene06329:CDS | 25.0% |
| !!! | TGCATTGAAATTTTGTTGTT+GGG | + | chr3.1:77644442-77644461 | MS.gene06329:intron | 25.0% |
| !!! | TTAATTTTTTGAGGGTTCAA+AGG | + | chr3.1:77644226-77644245 | MS.gene06329:intron | 25.0% |
| !!! | TTTTTTAGATTGAGTATCCA+AGG | + | chr3.1:77643912-77643931 | MS.gene06329:intron | 25.0% |
| AAAAGCAAGTTTGTATTTGC+TGG | + | chr3.1:77643568-77643587 | MS.gene06329:CDS | 30.0% | |
| AATGATCTTAAGAATTCTCC+TGG | + | chr3.1:77643149-77643168 | MS.gene06329:CDS | 30.0% | |
| AGAGAGTAAAGTTCTTGAAA+TGG | + | chr3.1:77643051-77643070 | MS.gene06329:CDS | 30.0% | |
| AGATACTAGATGCTTTATCA+AGG | + | chr3.1:77644068-77644087 | MS.gene06329:intron | 30.0% | |
| CTTTGCAACAACTACAAAAT+TGG | + | chr3.1:77644615-77644634 | MS.gene06329:CDS | 30.0% | |
| ! | GTAAAGTATTAGTACCTGTT+TGG | - | chr3.1:77643252-77643271 | None:intergenic | 30.0% |
| ! | GTCTATGATTTTGCTAAACT+TGG | - | chr3.1:77644295-77644314 | None:intergenic | 30.0% |
| ! | TTATGGAGAGTTTGATAACA+AGG | + | chr3.1:77642995-77643014 | MS.gene06329:CDS | 30.0% |
| ! | TTTTGAACTCTTTTCTCCAA+CGG | - | chr3.1:77642872-77642891 | None:intergenic | 30.0% |
| !! | AAGCAATTTTTCTAGTCTTC+TGG | - | chr3.1:77644578-77644597 | None:intergenic | 30.0% |
| !! | ATGGTCATTTTGTTAAGTCA+TGG | - | chr3.1:77644200-77644219 | None:intergenic | 30.0% |
| AACCAGAAGAGGTTTCAATA+TGG | + | chr3.1:77642739-77642758 | MS.gene06329:CDS | 35.0% | |
| AACTACAAAATTGGTGAACC+TGG | + | chr3.1:77644624-77644643 | MS.gene06329:CDS | 35.0% | |
| AATCCTGACAAAACACAGAA+AGG | - | chr3.1:77643886-77643905 | None:intergenic | 35.0% | |
| ACCAGAAGAGGTTTCAATAT+GGG | + | chr3.1:77642740-77642759 | MS.gene06329:CDS | 35.0% | |
| ACTACAAAATTGGTGAACCT+GGG | + | chr3.1:77644625-77644644 | MS.gene06329:CDS | 35.0% | |
| AGATGAACAGAACAATGAAC+AGG | + | chr3.1:77642458-77642477 | MS.gene06329:CDS | 35.0% | |
| AGCAGAAAAGAAAGAAACAG+AGG | + | chr3.1:77642581-77642600 | MS.gene06329:CDS | 35.0% | |
| ATCTAGTATCTCTCAAGTCA+GGG | - | chr3.1:77644059-77644078 | None:intergenic | 35.0% | |
| ATGCATGGATATGACAAAGA+AGG | + | chr3.1:77642951-77642970 | MS.gene06329:CDS | 35.0% | |
| CAACTTTCAGTCAAATATGG+TGG | + | chr3.1:77643738-77643757 | MS.gene06329:CDS | 35.0% | |
| CTAAGCAAAGATGGTGAATT+TGG | + | chr3.1:77643762-77643781 | MS.gene06329:CDS | 35.0% | |
| CTGATACCACTAAATAGATG+CGG | + | chr3.1:77643358-77643377 | MS.gene06329:intron | 35.0% | |
| CTGTTACAGAAATTACAGTG+AGG | + | chr3.1:77643796-77643815 | MS.gene06329:CDS | 35.0% | |
| CTTAGAGCTTGAATTGTCAA+TGG | - | chr3.1:77644664-77644683 | None:intergenic | 35.0% | |
| GAGAAAACTGTTTACATGCA+TGG | + | chr3.1:77642936-77642955 | MS.gene06329:CDS | 35.0% | |
| GAGCAACTTTCAGTCAAATA+TGG | + | chr3.1:77643735-77643754 | MS.gene06329:CDS | 35.0% | |
| GATGAAAAAATTCCAGAGTC+TGG | + | chr3.1:77642225-77642244 | MS.gene06329:CDS | 35.0% | |
| GGAAACAGACATACTTCAAT+TGG | + | chr3.1:77644108-77644127 | MS.gene06329:intron | 35.0% | |
| GTTCTGTTCATCTTTCTTGT+TGG | - | chr3.1:77642451-77642470 | None:intergenic | 35.0% | |
| GTTCTTGAAATGGAGAATTC+TGG | + | chr3.1:77643061-77643080 | MS.gene06329:CDS | 35.0% | |
| TATTTGACTGAAAGTTGCTC+AGG | - | chr3.1:77643735-77643754 | None:intergenic | 35.0% | |
| TGGATTGTGTAATCTTTCCT+AGG | + | chr3.1:77643946-77643965 | MS.gene06329:intron | 35.0% | |
| TTAATCAGAAGTTGAAGGCT+TGG | - | chr3.1:77644715-77644734 | None:intergenic | 35.0% | |
| ! | TGGCATTGTCATTGTGATTT+TGG | - | chr3.1:77644262-77644281 | None:intergenic | 35.0% |
| ! | TGTGTTTTGTCAGGATTGAT+TGG | + | chr3.1:77643889-77643908 | MS.gene06329:intron | 35.0% |
| ! | TTACCTTTCTGTGTTTTGTC+AGG | + | chr3.1:77643880-77643899 | MS.gene06329:intron | 35.0% |
| ! | TTCTTTTCTGCTTCTTCTCT+TGG | - | chr3.1:77642573-77642592 | None:intergenic | 35.0% |
| ! | TTTTGTTCTTTAACTGGGCT+TGG | - | chr3.1:77642381-77642400 | None:intergenic | 35.0% |
| !! | TTCTTTCACTTTGAAGTCTC+TGG | - | chr3.1:77642823-77642842 | None:intergenic | 35.0% |
| !!! | GGAATTTTTTCATCACCACT+GGG | - | chr3.1:77642219-77642238 | None:intergenic | 35.0% |
| !!! | TGGAATTTTTTCATCACCAC+TGG | - | chr3.1:77642220-77642239 | None:intergenic | 35.0% |
| AAAGATAGCCACAACTCAAG+AGG | + | chr3.1:77642038-77642057 | MS.gene06329:CDS | 40.0% | |
| AATAGTGCAAATACCACCAG+GGG | - | chr3.1:77643120-77643139 | None:intergenic | 40.0% | |
| AATCAGCTGAGACTCTTCTA+AGG | + | chr3.1:77643599-77643618 | MS.gene06329:CDS | 40.0% | |
| AATCTTTCCTAGGATTCCTC+TGG | + | chr3.1:77643956-77643975 | MS.gene06329:intron | 40.0% | |
| AATGACAATGCCACGTGATT+TGG | + | chr3.1:77644269-77644288 | MS.gene06329:intron | 40.0% | |
| ACAACAACAACAACCAGAAG+AGG | + | chr3.1:77642728-77642747 | MS.gene06329:CDS | 40.0% | |
| ACAATAGTGCAAATACCACC+AGG | - | chr3.1:77643122-77643141 | None:intergenic | 40.0% | |
| ACCAAATTCACCTCAGTAAC+TGG | - | chr3.1:77643849-77643868 | None:intergenic | 40.0% | |
| ACCTGTTTGGCTACAAATTC+AGG | - | chr3.1:77643239-77643258 | None:intergenic | 40.0% | |
| AGGTGTTTATCAATGTGCCA+TGG | + | chr3.1:77643494-77643513 | MS.gene06329:intron | 40.0% | |
| CAATAGTGCAAATACCACCA+GGG | - | chr3.1:77643121-77643140 | None:intergenic | 40.0% | |
| CAGAAGAGGTTTCAATATGG+GGG | + | chr3.1:77642742-77642761 | MS.gene06329:CDS | 40.0% | |
| CATCTAGTATCTCTCAAGTC+AGG | - | chr3.1:77644060-77644079 | None:intergenic | 40.0% | |
| CATGGGAGCTAAGAGTAATT+GGG | + | chr3.1:77644490-77644509 | MS.gene06329:CDS | 40.0% | |
| CCAGAAGAGGTTTCAATATG+GGG | + | chr3.1:77642741-77642760 | MS.gene06329:CDS | 40.0% | |
| CGCATCTATTTAGTGGTATC+AGG | - | chr3.1:77643360-77643379 | None:intergenic | 40.0% | |
| CTCAGTAACTGGAAATTCCA+CGG | - | chr3.1:77643838-77643857 | None:intergenic | 40.0% | |
| GAAATGGAGAATTCTGGTCT+TGG | + | chr3.1:77643067-77643086 | MS.gene06329:CDS | 40.0% | |
| GAGTTTGTACCAAGTTCAGA+AGG | + | chr3.1:77644534-77644553 | MS.gene06329:CDS | 40.0% | |
| GTTCTATCGTCTACAAGAAG+TGG | - | chr3.1:77642771-77642790 | None:intergenic | 40.0% | |
| TAGAAGAGTCTCAGCTGATT+TGG | - | chr3.1:77643599-77643618 | None:intergenic | 40.0% | |
| TCATCAGATTCTTTGTCAGC+TGG | - | chr3.1:77642123-77642142 | None:intergenic | 40.0% | |
| TCATGGGAGCTAAGAGTAAT+TGG | + | chr3.1:77644489-77644508 | MS.gene06329:CDS | 40.0% | |
| TCCAGTTACTGAGGTGAATT+TGG | + | chr3.1:77643845-77643864 | MS.gene06329:intron | 40.0% | |
| TCCTGAATTTGTAGCCAAAC+AGG | + | chr3.1:77643235-77643254 | MS.gene06329:CDS | 40.0% | |
| TGATCAAGAACACTATCCGT+TGG | + | chr3.1:77642853-77642872 | MS.gene06329:CDS | 40.0% | |
| TGTTTATCAATGTGCCATGG+TGG | + | chr3.1:77643497-77643516 | MS.gene06329:CDS | 40.0% | |
| TTGTAGTTGTTGCAAAGCAC+TGG | - | chr3.1:77644612-77644631 | None:intergenic | 40.0% | |
| ! | AAGCAATTGAAGGGCTTGTT+TGG | - | chr3.1:77643204-77643223 | None:intergenic | 40.0% |
| ! | CGGGCTTTTGTTCTTTAACT+GGG | - | chr3.1:77642386-77642405 | None:intergenic | 40.0% |
| ! | GGTTGTTGTTGTTGTTGTTC+CGG | - | chr3.1:77642723-77642742 | None:intergenic | 40.0% |
| ! | TCAGCTTCAGTTGTTGTTGT+TGG | - | chr3.1:77642543-77642562 | None:intergenic | 40.0% |
| ! | TCAGTTGTTGTTGTTGGTAG+TGG | - | chr3.1:77642537-77642556 | None:intergenic | 40.0% |
| ! | TCGGGCTTTTGTTCTTTAAC+TGG | - | chr3.1:77642387-77642406 | None:intergenic | 40.0% |
| ! | TCTTGAGTTGTGGCTATCTT+TGG | - | chr3.1:77642039-77642058 | None:intergenic | 40.0% |
| ! | TGGAGAGTTTGATAACAAGG+AGG | + | chr3.1:77642998-77643017 | MS.gene06329:CDS | 40.0% |
| ! | TTCTTGTTGGTCTCTTCAGA+AGG | - | chr3.1:77642438-77642457 | None:intergenic | 40.0% |
| !! | AAGGAAGAGAGCACTATTGT+TGG | + | chr3.1:77642255-77642274 | MS.gene06329:CDS | 40.0% |
| !! | CTGAGACTCTTCTAAGGTAA+AGG | + | chr3.1:77643605-77643624 | MS.gene06329:intron | 40.0% |
| !! | GGAGAAGAGTATTAGGAAGT+TGG | + | chr3.1:77643088-77643107 | MS.gene06329:CDS | 40.0% |
| !! | GTTTTCAACGGGCTTTTTCT+CGG | - | chr3.1:77642166-77642185 | None:intergenic | 40.0% |
| !! | TATGGTGGACTAAGCAAAGA+TGG | + | chr3.1:77643753-77643772 | MS.gene06329:CDS | 40.0% |
| !! | TGGTCTTGGAGAAGAGTATT+AGG | + | chr3.1:77643081-77643100 | MS.gene06329:CDS | 40.0% |
| !! | TTTTCAACGGGCTTTTTCTC+GGG | - | chr3.1:77642165-77642184 | None:intergenic | 40.0% |
| !!! | CTCAGCAGTGTTGTTTTCAA+CGG | - | chr3.1:77642178-77642197 | None:intergenic | 40.0% |
| !!! | TCAGCAGTGTTGTTTTCAAC+GGG | - | chr3.1:77642177-77642196 | None:intergenic | 40.0% |
| AATCCAATGCAACGTTCCCT+TGG | - | chr3.1:77643932-77643951 | None:intergenic | 45.0% | |
| AATTGGTGAACCTGGGAAAG+TGG | + | chr3.1:77644632-77644651 | MS.gene06329:CDS | 45.0% | |
| AGAAATTACAGTGAGGCCTG+CGG | + | chr3.1:77643803-77643822 | MS.gene06329:CDS | 45.0% | |
| AGCTTGTCTAAGCTCCCATT+TGG | - | chr3.1:77643180-77643199 | None:intergenic | 45.0% | |
| AGTGCTTTCTTCTCAGCTTC+AGG | - | chr3.1:77642288-77642307 | None:intergenic | 45.0% | |
| ATCAGTTCCAGAGGAACCAA+AGG | + | chr3.1:77642680-77642699 | MS.gene06329:CDS | 45.0% | |
| ATGAAGACCAGAGGAATCCT+AGG | - | chr3.1:77643966-77643985 | None:intergenic | 45.0% | |
| ATTCTCCTGGACCTACCAAA+TGG | + | chr3.1:77643162-77643181 | MS.gene06329:CDS | 45.0% | |
| ATTGGGTGGGACATAAGCTA+TGG | + | chr3.1:77644507-77644526 | MS.gene06329:CDS | 45.0% | |
| CCCCATATTGAAACCTCTTC+TGG | - | chr3.1:77642744-77642763 | None:intergenic | 45.0% | |
| CGTGGAATTTCCAGTTACTG+AGG | + | chr3.1:77643836-77643855 | MS.gene06329:CDS | 45.0% | |
| CTAAACTTGGCCAAATCACG+TGG | - | chr3.1:77644282-77644301 | None:intergenic | 45.0% | |
| GCAGAACTGTCTACTCTCAT+GGG | + | chr3.1:77644473-77644492 | MS.gene06329:intron | 45.0% | |
| GCTTCTTCTGTAGACGAAGA+TGG | + | chr3.1:77642609-77642628 | MS.gene06329:CDS | 45.0% | |
| GGAGCTAAGAGTAATTGGGT+GGG | + | chr3.1:77644494-77644513 | MS.gene06329:CDS | 45.0% | |
| GTGTAGCTTCCTTCTGAACT+TGG | - | chr3.1:77644546-77644565 | None:intergenic | 45.0% | |
| TATCCAAGGGAACGTTGCAT+TGG | + | chr3.1:77643926-77643945 | MS.gene06329:intron | 45.0% | |
| TATCTCTCAAGTCAGGGCAT+AGG | - | chr3.1:77644053-77644072 | None:intergenic | 45.0% | |
| TGCAGAACTGTCTACTCTCA+TGG | + | chr3.1:77644472-77644491 | MS.gene06329:intron | 45.0% | |
| TGTAGCTTCATCAGTTCCAG+AGG | + | chr3.1:77642671-77642690 | MS.gene06329:CDS | 45.0% | |
| TGTCTAAGCTCCCATTTGGT+AGG | - | chr3.1:77643176-77643195 | None:intergenic | 45.0% | |
| TGTGATTCTGCTTCTGGTGT+GGG | - | chr3.1:77642411-77642430 | None:intergenic | 45.0% | |
| TTCACAGCTAAGTACCACCA+TGG | - | chr3.1:77643514-77643533 | None:intergenic | 45.0% | |
| TTCTCCTGGACCTACCAAAT+GGG | + | chr3.1:77643163-77643182 | MS.gene06329:CDS | 45.0% | |
| TTCTTTGTCAGCTGGAACAG+TGG | - | chr3.1:77642115-77642134 | None:intergenic | 45.0% | |
| TTGTGATTCTGCTTCTGGTG+TGG | - | chr3.1:77642412-77642431 | None:intergenic | 45.0% | |
| TTGTGGCCGCATCTATTTAG+TGG | - | chr3.1:77643367-77643386 | None:intergenic | 45.0% | |
| ! | AAGTTGGATTTTACCCCTGG+TGG | + | chr3.1:77643104-77643123 | MS.gene06329:CDS | 45.0% |
| ! | AGGAAGTTGGATTTTACCCC+TGG | + | chr3.1:77643101-77643120 | MS.gene06329:CDS | 45.0% |
| ! | TTGAAGGCTTGGTCTTCAAG+CGG | - | chr3.1:77644704-77644723 | None:intergenic | 45.0% |
| ! | TTGTTGGTCTCTTCAGAAGG+TGG | - | chr3.1:77642435-77642454 | None:intergenic | 45.0% |
| !! | AGAGTCTCAGCTGATTTGGA+AGG | - | chr3.1:77643595-77643614 | None:intergenic | 45.0% |
| !! | GTTGTTGTTGTTGGTAGTGG+TGG | - | chr3.1:77642534-77642553 | None:intergenic | 45.0% |
| AAACAACACTGCTGAGACCG+AGG | + | chr3.1:77642182-77642201 | MS.gene06329:CDS | 50.0% | |
| ACTGGGCTTGGAGTAGTTGA+AGG | - | chr3.1:77642369-77642388 | None:intergenic | 50.0% | |
| AGTTCCAGAGGAACCAAAGG+TGG | + | chr3.1:77642683-77642702 | MS.gene06329:CDS | 50.0% | |
| ATGGTGAGAACCACTTTCCC+AGG | - | chr3.1:77644645-77644664 | None:intergenic | 50.0% | |
| GAAGAAGCTTCCACCACCTT+TGG | - | chr3.1:77642699-77642718 | None:intergenic | 50.0% | |
| GGGAGCTAAGAGTAATTGGG+TGG | + | chr3.1:77644493-77644512 | MS.gene06329:CDS | 50.0% | |
| GGTGGTTGTGATTCTGCTTC+TGG | - | chr3.1:77642417-77642436 | None:intergenic | 50.0% | |
| TCCTTGAACGAACCAGACTC+TGG | - | chr3.1:77642240-77642259 | None:intergenic | 50.0% | |
| ! | ACTGGGCTTTGATACCTCCT+CGG | - | chr3.1:77642202-77642221 | None:intergenic | 50.0% |
| ! | TCCAGAGTCTGGTTCGTTCA+AGG | + | chr3.1:77642236-77642255 | MS.gene06329:CDS | 50.0% |
| !!! | TTTTTCTCGGGCTCTGGGTT+GGG | - | chr3.1:77642153-77642172 | None:intergenic | 50.0% |
| ACTTGCTCCTCCTCAGCAAC+AGG | - | chr3.1:77642069-77642088 | None:intergenic | 55.0% | |
| AGCTCCCATTTGGTAGGTCC+AGG | - | chr3.1:77643170-77643189 | None:intergenic | 55.0% | |
| GGGCTTGGAGTAGTTGAAGG+TGG | - | chr3.1:77642366-77642385 | None:intergenic | 55.0% | |
| TCCAGAGGAACCAAAGGTGG+TGG | + | chr3.1:77642686-77642705 | MS.gene06329:CDS | 55.0% | |
| TGTTGCTGAGGAGGAGCAAG+TGG | + | chr3.1:77642068-77642087 | MS.gene06329:CDS | 55.0% | |
| TTCTGCTTCTGGTGTGGGCT+CGG | - | chr3.1:77642406-77642425 | None:intergenic | 55.0% | |
| ! | AGGCACTGCCTCTTGAGTTG+TGG | - | chr3.1:77642049-77642068 | None:intergenic | 55.0% |
| ! | TCCACCACCTTTGGTTCCTC+TGG | - | chr3.1:77642690-77642709 | None:intergenic | 55.0% |
| !! | GAGGAGGTATCAAAGCCCAG+TGG | + | chr3.1:77642201-77642220 | MS.gene06329:CDS | 55.0% |
| !! | GGTGGTGGAAGCTTCTTCAC+CGG | + | chr3.1:77642701-77642720 | MS.gene06329:CDS | 55.0% |
| !!! | CTTTTTCTCGGGCTCTGGGT+TGG | - | chr3.1:77642154-77642173 | None:intergenic | 55.0% |
| AGAGGCAGTGCCTGTTGCTG+AGG | + | chr3.1:77642056-77642075 | MS.gene06329:CDS | 60.0% | |
| CAACACTGCTGAGACCGAGG+AGG | + | chr3.1:77642185-77642204 | MS.gene06329:CDS | 60.0% | |
| TCTGCTTCTGGTGTGGGCTC+GGG | - | chr3.1:77642405-77642424 | None:intergenic | 60.0% | |
| TGCTGAGGAGGAGCAAGTGG+TGG | + | chr3.1:77642071-77642090 | MS.gene06329:CDS | 60.0% | |
| ! | TCCACGGTGTGTTTTGCCGC+AGG | - | chr3.1:77643822-77643841 | None:intergenic | 60.0% |
| !! | ACGGGCTTTTTCTCGGGCTC+TGG | - | chr3.1:77642159-77642178 | None:intergenic | 60.0% |
| !! | CGGGCTTTTTCTCGGGCTCT+GGG | - | chr3.1:77642158-77642177 | None:intergenic | 60.0% |
| GCCTGCGGCAAAACACACCG+TGG | + | chr3.1:77643818-77643837 | MS.gene06329:CDS | 65.0% | |
| GGCAGTGCCTGTTGCTGAGG+AGG | + | chr3.1:77642059-77642078 | MS.gene06329:CDS | 65.0% | |
| !! | TCGGGCTCTGGGTTGGGCTT+GGG | - | chr3.1:77642147-77642166 | None:intergenic | 65.0% |
| !! | CTCGGGCTCTGGGTTGGGCT+TGG | - | chr3.1:77642148-77642167 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 77642021 | 77644734 | 77642021 | ID=MS.gene06329 |
| chr3.1 | mRNA | 77642021 | 77644734 | 77642021 | ID=MS.gene06329.t1;Parent=MS.gene06329 |
| chr3.1 | exon | 77642021 | 77643256 | 77642021 | ID=MS.gene06329.t1.exon1;Parent=MS.gene06329.t1 |
| chr3.1 | CDS | 77642021 | 77643256 | 77642021 | ID=cds.MS.gene06329.t1;Parent=MS.gene06329.t1 |
| chr3.1 | exon | 77643496 | 77643620 | 77643496 | ID=MS.gene06329.t1.exon2;Parent=MS.gene06329.t1 |
| chr3.1 | CDS | 77643496 | 77643620 | 77643496 | ID=cds.MS.gene06329.t1;Parent=MS.gene06329.t1 |
| chr3.1 | exon | 77643722 | 77643857 | 77643722 | ID=MS.gene06329.t1.exon3;Parent=MS.gene06329.t1 |
| chr3.1 | CDS | 77643722 | 77643857 | 77643722 | ID=cds.MS.gene06329.t1;Parent=MS.gene06329.t1 |
| chr3.1 | exon | 77644477 | 77644734 | 77644477 | ID=MS.gene06329.t1.exon4;Parent=MS.gene06329.t1 |
| chr3.1 | CDS | 77644477 | 77644734 | 77644477 | ID=cds.MS.gene06329.t1;Parent=MS.gene06329.t1 |
| Gene Sequence |
| Protein sequence |
